IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2343	 66.51	0	2593428..2594051	+	207	121594779	-	Ajs_2438	-	hypothetical protein
2344	 68.98	0	2594056..2594703	-	215	121594780	-	Ajs_2439	-	hypothetical protein
2345	 62.52	0	2594959..2595657	-	232	121594781	-	Ajs_2440	-	negative transcriptional regulator
2346	 63.40	0	2595829..2596410	-	193	121594782	-	Ajs_2441	-	TetR family transcriptional regulator
2347	 63.28	0	2596517..2597845	+	442	121594783	-	Ajs_2442	-	beta-ketoacyl synthase
2348	 65.98	0	2597939..2599534	+	531	121594784	-	Ajs_2443	-	integrase catalytic subunit
2349	 64.97	0	2599531..2600295	+	254	121594785	-	Ajs_2444	-	IstB ATP binding domain-containing protein
2350	 55.10	-2	2600249..2600689	-	146	121594786	-	Ajs_2445	-	hypothetical protein
2351	 53.03	-2	2600829..2601488	-	219	121594787	-	Ajs_2446	-	hypothetical protein
2352	 53.57	-2	2601481..2602572	-	363	121594788	-	Ajs_2447	-	hypothetical protein
2353	 54.03	-2	2602657..2603685	-	342	121594789	-	Ajs_2448	-	hypothetical protein
2354	 56.26	-2	2603815..2604804	-	329	121594790	-	Ajs_2449	-	hypothetical protein
2355	 57.41	-1	2604823..2605200	-	125	121594791	-	Ajs_2450	-	hypothetical protein
2356	 57.51	-1	2605665..2606975	+	436	121594792	-	Ajs_2451	-	hypothetical protein
2357	 56.34	-2	2607034..2608137	-	367	121594793	-	Ajs_2452	-	hypothetical protein
2358	 58.21	-1	2608143..2609372	-	409	121594794	-	Ajs_2453	-	helix-turn-helix domain-containing protein
2359	 54.25	-2	2609369..2609674	-	101	121594795	-	Ajs_2454	-	hypothetical protein
2360	 65.02	0	2609863..2611377	-	504	121594796	-	Ajs_2455	-	transposase IS66
2361	 66.03	0	2611458..2611769	-	103	121594797	-	Ajs_2456	-	IS66 Orf2 family protein
2362	 66.23	0	2611790..2612242	-	150	121594798	-	Ajs_2457	-	transposase IS3/IS911 family protein
2363	 62.86	0	2612889..2614649	-	586	121594799	-	Ajs_2458	-	UvrD/REP helicase
2364	 63.92	0	2614646..2616466	-	606	121594800	-	Ajs_2459	-	hypothetical protein
2365	 55.23	-2	2616693..2617934	-	413	121594801	-	Ajs_2460	-	phage integrase family protein
2366	 59.73	-1	2618531..2619208	-	225	121594802	-	Ajs_2461	-	phosphoglycolate phosphatase
2367	 61.76	0	2619205..2619918	-	237	121594803	-	Ajs_2462	-	3-demethylubiquinone-9 3-methyltransferase
2368	 60.27	-1	2619998..2620654	-	218	121594804	-	Ajs_2463	-	OmpA/MotB domain-containing protein
2369	 64.57	0	2620848..2623514	+	888	121594805	-	Ajs_2464	-	DNA gyrase subunit A
2370	 67.47	0	2623578..2624693	+	371	121594806	-	Ajs_2465	-	phosphoserine aminotransferase
2371	 69.09	0	2624810..2625925	+	371	121594807	-	Ajs_2466	-	chorismate mutase / prephenate dehydratase
2372	 68.93	0	2625935..2626819	+	294	121594808	-	Ajs_2467	-	prephenate dehydrogenase
2373	 68.79	0	2626819..2628840	+	673	121594809	-	Ajs_2468	-	bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase
2374	 62.99	0	2629014..2630699	+	561	121594810	rpsA	Ajs_2469	-	30S ribosomal protein S1
2375	 66.03	0	2630821..2631132	+	103	121594811	-	Ajs_2470	-	integration host factor, beta subunit
2376	 69.67	0	2631262..2631594	+	110	121594812	-	Ajs_2471	-	hypothetical protein
2377	 70.38	0	2631584..2632741	+	385	121594813	-	Ajs_2472	-	hypothetical protein
2378	 73.62	+1	2632750..2633094	+	114	121594814	-	Ajs_2473	-	hypothetical protein
2379	 68.09	0	2633206..2636160	+	984	121594815	-	Ajs_2474	-	putative monovalent cation/H+ antiporter subunit A
2380	 65.57	0	2636160..2636525	+	121	121594816	-	Ajs_2475	-	putative monovalent cation/H+ antiporter subunit C
2381	 69.37	0	2636522..2638258	+	578	121594817	-	Ajs_2476	-	putative monovalent cation/H+ antiporter subunit D
2382	 64.63	0	2638255..2638746	+	163	121594818	-	Ajs_2477	-	putative monovalent cation/H+ antiporter subunit E
2383	 64.18	0	2638743..2639024	+	93	121594819	-	Ajs_2478	-	multiple resistance and pH regulation protein F
2384	 67.75	0	2639021..2639389	+	122	121594820	-	Ajs_2479	-	Na+/H+ antiporter subunit
2385	 68.88	0	2639460..2643212	-	1250	121594821	-	Ajs_2480	-	5-oxoprolinase (ATP-hydrolyzing)
2386	 70.07	0	2643299..2645122	+	607	121594822	-	Ajs_2481	-	hypothetical protein
2387	 68.39	0	2645168..2645746	-	192	121594823	-	Ajs_2482	-	putative transcriptional regulator
2388	 66.16	0	2645950..2646927	+	325	121594824	-	Ajs_2483	-	TRAP dicarboxylate transporter- DctP subunit
2389	 69.02	0	2646965..2647474	+	169	121594825	-	Ajs_2484	-	tripartite ATP-independent periplasmic transporter DctQ
2390	 67.20	0	2647490..2648794	+	434	121594826	-	Ajs_2485	-	TRAP dicarboxylate transporter, DctM subunit
2391	 71.46	+1	2648837..2649232	+	131	121594827	-	Ajs_2486	-	camphor resistance protein CrcB
2392	 65.62	0	2649364..2650227	+	287	121594828	-	Ajs_2487	-	hypothetical protein
2393	 72.39	+1	2650282..2651469	-	395	121594829	-	Ajs_2488	-	major facilitator superfamily transporter
2394	 68.61	0	2651471..2653171	-	566	121594830	-	Ajs_2489	-	hypothetical protein
2395	 68.60	0	2653235..2654215	-	326	121594831	-	Ajs_2490	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2396	 66.24	0	2654295..2655710	-	471	121594832	-	Ajs_2491	-	putative transmembrane protein
2397	 64.91	0	2655775..2656971	-	398	121594833	-	Ajs_2492	-	nicotinate phosphoribosyltransferase
2398	 66.46	0	2657151..2657639	-	162	121594834	-	Ajs_2493	-	thioesterase superfamily protein
2399	 65.07	0	2657909..2658472	+	187	121594835	-	Ajs_2494	-	phasin family protein
2400	 72.50	+1	2660419..2661309	+	296	121594836	-	Ajs_2496	-	peptidase M23B
2401	 73.89	+1	2661306..2661956	+	216	121594837	-	Ajs_2497	-	ribosomal large subunit pseudouridine synthase E
2402	 75.12	+1	2662059..2663099	+	346	121594838	-	Ajs_2498	-	Sel1 domain-containing protein
2403	 72.74	+1	2663161..2663835	-	224	121594839	-	Ajs_2499	-	hypothetical protein
2404	 71.10	0	2663924..2664826	-	300	121594840	-	Ajs_2500	-	transporter DMT superfamily protein
2405	 74.60	+1	2665191..2665808	+	205	121594841	-	Ajs_2501	-	nuclease
2406	 70.46	0	2665849..2666796	-	315	121594842	-	Ajs_2502	-	phosphoesterase, DHHA1
2407	 70.37	0	2666935..2667204	+	89	121594843	-	Ajs_2503	-	hypothetical protein
2408	 68.40	0	2667313..2667600	+	95	121594844	-	Ajs_2504	-	hypothetical protein
2409	 71.87	+1	2667597..2668403	+	268	121594845	-	Ajs_2505	-	tRNA pseudouridine synthase C
2410	 71.75	+1	2668628..2669197	+	189	121594846	-	Ajs_2506	-	MgtC/SapB transporter
2411	 64.29	0	2669252..2669461	+	69	121594847	-	Ajs_2507	-	hypothetical protein
2412	 73.43	+1	2669620..2671614	+	664	121594848	-	Ajs_2508	-	hypothetical protein
2413	 68.78	0	2671700..2672173	+	157	121594849	-	Ajs_2509	-	OsmC family protein
2414	 68.85	0	2672217..2673176	-	319	121594850	-	Ajs_2510	-	GTP-binding protein, HSR1-related
2415	 67.12	0	2673233..2673454	+	73	121594851	-	Ajs_2511	-	hypothetical protein
2416	 75.24	+1	2673470..2673679	+	69	121594852	-	Ajs_2512	-	hypothetical protein
2417	 64.45	0	2673752..2675512	-	586	121594853	-	Ajs_2513	-	arsenite-activated ATPase ArsA
2418	 59.11	-1	2675566..2675949	+	127	121594854	-	Ajs_2514	-	ArsR family transcriptional regulator
2419	 65.02	0	2675972..2676457	+	161	121594855	-	Ajs_2515	-	glyoxalase/bleomycin resistance protein/dioxygenase
2420	 65.86	0	2676475..2676972	+	165	121594856	-	Ajs_2516	-	protein tyrosine phosphatase
2421	 66.02	0	2676974..2678056	+	360	121594857	-	Ajs_2517	-	arsenical-resistance protein
2422	 71.27	+1	2678046..2679239	+	397	121594858	-	Ajs_2518	-	major facilitator superfamily transporter
2423	 71.02	0	2679286..2680203	-	305	121594859	-	Ajs_2519	-	LysR family transcriptional regulator
2424	 71.38	+1	2680417..2682114	+	565	121594860	-	Ajs_2520	-	acetolactate synthase 2 catalytic subunit
2425	 68.69	0	2682284..2683816	-	510	121594861	-	Ajs_2521	-	glutamate-cysteine ligase
2426	 68.75	0	2683989..2684900	-	303	121594862	-	Ajs_2522	-	short-chain dehydrogenase/reductase SDR
2427	 67.34	0	2685104..2687617	-	837	121594863	ligD	Ajs_2523	-	ATP-dependent DNA ligase
2428	 65.04	0	2687648..2688691	-	347	121594864	-	Ajs_2524	-	Ku domain-containing protein
2429	 60.10	-1	2689273..2689470	-	65	121594865	-	Ajs_2525	-	hypothetical protein
2430	 61.65	-1	2689533..2690708	-	391	121594866	-	Ajs_2526	-	putative transcriptional regulator
2431	 58.28	-1	2690690..2693359	-	889	121594867	-	Ajs_2527	-	hypothetical protein
2432	 63.78	0	2693356..2694567	-	403	121594868	-	Ajs_2528	-	hypothetical protein
2433	 62.38	0	2694560..2696614	-	684	121594869	-	Ajs_2529	-	hypothetical protein
2434	 59.06	-1	2696611..2699397	-	928	121594870	-	Ajs_2530	-	putative DNA methylase
2435	 57.71	-1	2699456..2699656	-	66	121594871	-	Ajs_2531	-	phage transcriptional regulator, AlpA
2436	 67.10	0	2700955..2701185	-	76	121594872	-	Ajs_2534	-	hypothetical protein
2437	 66.67	0	2701248..2701526	-	92	121594873	-	Ajs_2535	-	hypothetical protein
2438	 64.73	0	2701523..2703121	-	532	121594874	-	Ajs_2536	-	TrbL/VirB6 plasmid conjugal transfer protein
2439	 62.96	0	2703118..2703387	-	89	121594875	-	Ajs_2537	-	putative entry/exclusion protein TrbK
2440	 63.74	0	2703403..2704188	-	261	121594876	-	Ajs_2538	-	mating pair formation protein TrbJ
2441	 61.83	0	2704430..2704801	-	123	121594877	-	Ajs_2539	-	OriT-binding protein, TraJ
2442	 62.01	0	2705121..2705399	-	92	121594878	-	Ajs_2540	-	putative OriT-binding protein, TraK
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.