IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2326	 42.07	0	2788697..2789554	-	285	126642441	-	A1S_2404	-	hypothetical protein
2327	 40.00	0	2789868..2790617	-	249	126642442	-	A1S_2405	-	LysR family transcriptional regulator
2328	 40.42	0	2791031..2791651	+	206	126642443	-	A1S_2406	-	hypothetical protein
2329	 36.62	-1	2791713..2792108	-	131	126642444	-	A1S_2407	-	hypothetical protein
2330	 39.80	0	2792194..2792487	-	97	126642445	-	A1S_2408	-	hypothetical protein
2331	 42.81	0	2792584..2793438	-	284	126642446	-	A1S_2409	-	hypothetical protein
2332	 40.46	0	2793576..2794361	-	261	126642447	-	A1S_2410	-	fatty acid desaturase
2333	 39.28	0	2794833..2795723	-	296	126642448	-	A1S_2411	-	short chain dehydrogenase/reductase family oxidoreductase
2334	 37.42	0	2795747..2796529	-	260	126642449	-	A1S_2412	-	hypothetical protein
2335	 39.20	0	2796847..2798175	-	442	126642450	-	A1S_2413	-	putative hemolysin-type calcium-binding region
2336	 40.28	0	2798186..2799970	-	594	126642451	-	A1S_2414	-	putative calcium binding hemolysin protein
2337	 45.38	+1	2800642..2800890	-	82	126642452	-	A1S_2416	-	hypothetical protein
2338	 42.49	0	2800947..2801372	-	141	126642453	-	A1S_2417	-	starvation-induced peptide utilization protein
2339	 44.44	+1	2801589..2802695	-	368	126642454	-	A1S_2418	-	starvation-induced peptide utilization protein
2340	 40.95	0	2803210..2803734	-	174	126642455	-	A1S_2419	-	elongation factor P
2341	 39.03	0	2804027..2804869	+	280	126642456	-	A1S_2420	-	putative aminomutase
2342	 37.55	0	2805005..2806498	+	497	126642457	-	A1S_2421	-	hypothetical protein
2343	 38.70	0	2806837..2808735	+	632	126642458	-	A1S_2422	-	hypothetical protein
2344	 39.56	0	2808798..2809022	-	74	126642459	-	A1S_2423	-	50S ribosomal protein L31
2345	 41.14	0	2809229..2809561	-	110	126642460	-	A1S_2424	-	putative Na+-dependent transporter
2346	 37.00	0	2809588..2810133	-	181	126642461	-	A1S_2425	-	putative Na+-dependent transporter
2347	 40.67	0	2810321..2810647	-	108	126642462	-	A1S_2426	-	lactoylglutathione lyase
2348	 38.98	0	2810725..2812830	-	701	126642463	-	A1S_2427	-	putative transporter
2349	 41.67	0	2813195..2813674	+	159	126642464	-	A1S_2428	-	putative ATP-dependent protease
2350	 41.64	0	2813839..2814765	+	308	126642465	-	A1S_2429	-	putative ATP-dependent protease
2351	 41.80	0	2814767..2815699	+	310	126642466	-	A1S_2430	-	putative ATP-dependent protease
2352	 39.97	0	2815756..2816553	-	265	126642467	-	A1S_2431	-	putative transcriptional regulator
2353	 43.32	0	2816787..2817557	-	256	126642468	-	A1S_2432	-	lipoprotein precursor
2354	 43.59	0	2817732..2818277	-	181	126642469	-	A1S_2433	-	survival protein (acid phosphatase)
2355	 37.33	0	2819169..2819543	+	124	126642470	-	A1S_2434	-	putative signal peptide
2356	 37.66	0	2819778..2820818	+	346	126642471	-	A1S_2435	-	D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor)
2357	 37.36	0	2820918..2821463	+	181	126642472	-	A1S_2436	-	putative transferase
2358	 42.56	0	2821682..2822071	+	129	126642473	-	A1S_2437	-	putative Nudix hydrolase
2359	 46.15	+1	2822076..2822270	+	64	126642474	-	A1S_2438	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2360	 41.85	0	2822413..2823210	+	265	126642475	-	A1S_2439	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2361	 39.18	0	2823224..2823958	+	244	126642476	-	A1S_2440	-	hypothetical protein
2362	 39.11	0	2824121..2825401	+	426	126642477	-	A1S_2441	-	adenylosuccinate lyase
2363	 37.43	0	2825613..2826125	+	170	126642478	-	A1S_2442	-	hypothetical protein
2364	 36.92	0	2826173..2828236	-	687	126642479	-	A1S_2443	-	surface adhesion protein putative
2365	 40.23	0	2828638..2829318	-	226	126642480	-	A1S_2444	-	putative periplasmic protease
2366	 40.09	0	2829747..2830649	-	300	126642481	-	A1S_2445	-	high-affinity phosphate transport protein
2367	 42.29	0	2830663..2831823	-	386	126642482	-	A1S_2446	-	high-affinity phosphate transport protein
2368	 43.30	0	2832057..2833190	-	377	126642483	-	A1S_2447	-	EsvD
2369	 39.45	0	2833537..2834583	-	348	126642484	-	A1S_2448	-	putative phosphate transporter
2370	 40.13	0	2835024..2836142	-	372	126642485	-	A1S_2449	-	aromatic amino acid APC transporter
2371	 39.79	0	2836543..2838060	-	505	126642486	-	A1S_2450	-	putative pyruvate decarboxylase
2372	 35.90	-1	2838534..2838884	+	116	126642487	-	A1S_2451	-	AsnC family transcriptional regulator
2373	 43.73	+1	2838956..2840128	-	390	126642488	-	A1S_2452	-	NAD-dependent aldehyde dehydrogenases
2374	 42.25	0	2840663..2842120	-	485	126642489	-	A1S_2453	-	L-24-diaminobutyrate decarboxylase
2375	 42.53	0	2842198..2843502	-	434	126642490	-	A1S_2454	-	diaminobutyrate--2-oxoglutarate aminotransferase
2376	 38.40	0	2844090..2844740	+	216	126642491	-	A1S_2455	-	putative signal peptide
2377	 39.41	0	2844859..2845533	-	224	126642492	-	A1S_2456	-	LysR family transcriptional regulator
2378	 37.01	0	2846016..2846450	+	144	126642493	-	A1S_2457	-	NAD(P)H oxidoreductase
2379	 38.99	0	2846517..2847347	-	276	126642494	-	A1S_2458	-	putative fatty acid desaturase
2380	 38.81	0	2847624..2848628	-	334	126642495	-	A1S_2459	-	putative oxidoreductase
2381	 39.43	0	2848826..2849530	+	234	126642496	-	A1S_2460	-	TetR family transcriptional regulator
2382	 32.91	-2	2849775..2850713	+	312	126642497	-	A1S_2461	-	hypothetical protein
2383	 42.15	0	2850769..2853342	-	857	126642498	-	A1S_2462	-	ATP-dependent helicase HepA
2384	 43.65	+1	2853751..2854341	-	196	126642499	-	A1S_2463	-	putative ribosomal large subunit pseudouridine synthase A(RluA-like)
2385	 41.55	0	2855288..2856394	-	368	126642500	-	A1S_2464	-	glutamate-1-semialdehyde aminotransferase
2386	 41.83	0	2856629..2857240	-	203	126642501	-	A1S_2465	-	putative thiamin-phosphate pyrophosphorylase
2387	 38.89	0	2857356..2857625	-	89	126642502	-	A1S_2466	-	hypothetical protein
2388	 40.15	0	2858048..2859367	+	439	126642503	-	A1S_2467	-	hypothetical protein
2389	 38.78	0	2859403..2859843	-	146	126642504	-	A1S_2468	-	hypothetical protein
2390	 39.32	0	2860139..2860522	+	127	126642505	-	A1S_2469	-	hypothetical protein
2391	 37.90	0	2860580..2863207	-	875	126642506	-	A1S_2470	-	putative protease
2392	 37.64	0	2863465..2864184	-	239	126642507	-	A1S_2471	-	putative epimerase
2393	 43.04	0	2864429..2865592	-	387	126642508	-	A1S_2472	-	putative transport protein
2394	 40.00	0	2866021..2866830	-	269	126642509	-	A1S_2473	-	LysR family transcriptional regulator
2395	 40.74	0	2867017..2868177	+	386	126642510	-	A1S_2474	-	major facilitator family transporter
2396	 41.55	0	2869529..2870647	-	372	126642511	-	A1S_2475	-	isocitrate dehydrogenase
2397	 44.54	+1	2871052..2871774	+	240	126642512	-	A1S_2476	-	putative pseudouridine synthase
2398	 42.99	0	2871892..2873982	-	696	126642513	-	A1S_2477	-	isocitrate dehydrogenase
2399	 36.55	-1	2874531..2876054	-	507	126642514	-	A1S_2478	-	putative trypsin-like serine protease
2400	 38.64	0	2876596..2877726	+	376	126642515	-	A1S_2479	-	putative D-ala-D-ala-carboxypeptidase penicillin-binding protein
2401	 39.81	0	2878063..2879112	+	349	126642516	-	A1S_2480	-	NADH dehydrogenase II
2402	 42.27	0	2879272..2879730	+	152	126642517	-	A1S_2481	-	FKBP-type peptidyl-prolyl cis-trans isomerase
2403	 35.95	-1	2880131..2881276	+	381	126642518	-	A1S_2482	-	deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
2404	 35.39	-1	2881530..2882210	+	226	126642519	-	A1S_2483	-	hypothetical protein
2405	 37.48	0	2882360..2883106	+	248	126642520	-	A1S_2484	-	hypothetical protein
2406	 39.17	0	2883282..2884343	+	353	126642521	-	A1S_2485	-	putative glycosyltransferase
2407	 39.67	0	2884413..2885249	+	278	126642522	-	A1S_2486	-	hypothetical protein
2408	 36.61	-1	2885639..2886187	+	182	126642523	-	A1S_2487	-	hypothetical protein
2409	 38.75	0	2886240..2887070	+	276	126642524	-	A1S_2488	-	hypothetical protein
2410	 39.33	0	2887078..2887878	-	266	126642525	-	A1S_2489	-	UDP-N-acetyl glucosamine-2-epimerase
2411	 34.04	-1	2888022..2888162	-	46	126642526	-	A1S_2490	-	UDP-N-acetyl glucosamine-2-epimerase
2412	 37.35	0	2888219..2889364	-	381	126642527	-	A1S_2491	-	putative signal peptide
2413	 39.06	0	2889800..2890393	+	197	126642528	-	A1S_2492	-	putative nodulin 21-related protein
2414	 41.48	0	2890496..2891551	+	351	126642529	-	A1S_2493	-	putative 2-nitropropane dioxygenase
2415	 39.74	0	2891595..2892500	-	301	126642530	-	A1S_2494	-	NifR3 family protein
2416	 38.30	0	2892704..2893912	+	402	126642531	-	A1S_2495	-	hypothetical protein
2417	 38.96	0	2894074..2894535	+	153	126642532	-	A1S_2496	-	putative phosphoserine phosphatase
2418	 43.65	+1	2894562..2895695	-	377	162286725	-	A1S_2497	-	gamma-glutamyl kinase
2419	 42.75	0	2895711..2896676	-	321	126642534	-	A1S_2498	-	putative GTP-binding protein (Obg)
2420	 32.81	-2	2897148..2897723	-	191	126642535	-	A1S_2499	-	hypothetical protein
2421	 34.86	-1	2897834..2898487	-	217	126642536	-	A1S_2500	-	hypothetical protein
2422	 39.06	0	2898718..2900097	-	459	126642537	-	A1S_2501	-	glyceraldehyde-3-phosphate dehydrogenase
2423	 37.83	0	2900392..2901192	-	266	126642538	-	A1S_2502	-	chloramphenicol-sensitive protein
2424	 36.83	0	2901448..2901876	-	142	126642539	-	A1S_2503	-	putative outer membrane lipoprotein
2425	 41.77	0	2902129..2904000	-	623	126642540	-	A1S_2504	-	excinuclease ABC subunit B
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.