IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.16   STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1955	 41.76	0	2353223..2353744	-	173	126642070	-	A1S_2025	-	hypothetical protein
1956	 37.28	0	2353927..2354154	-	75	126642071	-	A1S_2026	-	hypothetical protein
1957	 43.07	0	2354206..2354883	-	225	126642072	-	A1S_2027	-	hypothetical protein
1958	 40.75	0	2356274..2357257	-	327	126642073	-	A1S_2028	-	phage putative head morphogenesis protein
1959	 40.69	0	2357379..2358710	-	443	126642074	-	A1S_2029	-	hypothetical protein
1960	 43.53	0	2358827..2360179	-	450	126642075	-	A1S_2030	-	putative phage associated protein
1961	 38.35	0	2360244..2360642	-	132	126642076	-	A1S_2031	-	hypothetical protein
1962	 42.96	0	2360773..2361312	-	179	126642077	-	A1S_2032	-	hypothetical protein
1963	 37.22	0	2361383..2361742	-	119	126642078	-	A1S_2033	-	hypothetical protein
1964	 38.61	0	2364153..2364815	-	220	126642079	-	A1S_2034	-	hypothetical protein
1965	 42.95	0	2366469..2366780	-	103	126642080	-	A1S_2035	-	hypothetical protein
1966	 39.97	0	2368931..2370391	-	486	126642081	-	A1S_2036	-	DNA cytosine methyltransferase
1967	 36.77	0	2371894..2372358	+	154	126642082	-	A1S_2037	-	EsvI
1968	 41.16	0	2374436..2374831	+	131	126642083	-	A1S_2038	-	hypothetical protein
1969	 41.71	0	2375168..2376289	+	373	126642084	-	A1S_2039	-	hypothetical protein
1970	 35.24	-1	2378973..2380022	-	349	126642085	-	A1S_2040	-	putative phage integrase
1971	 36.42	-1	2380734..2381543	-	269	126642086	-	A1S_2041	-	hypothetical protein
1972	 28.60	-2	2382029..2382493	+	154	126642087	-	A1S_2042	-	TetR family transcriptional regulator
1973	 37.53	0	2383324..2384442	+	372	126642088	-	A1S_2043	-	putative iron-regulated membrane protein
1974	 37.52	0	2384679..2385275	+	198	126642089	-	A1S_2044	-	putative ferredoxin-dependent glutamate synthase
1975	 41.37	0	2385392..2385640	+	82	126642090	-	A1S_2045	-	putative ferredoxin-dependent glutamate synthase
1976	 38.79	0	2385637..2386278	+	213	126642091	-	A1S_2046	-	putative ferredoxin-dependent glutamate synthase
1977	 40.19	0	2386320..2387150	-	276	126642092	-	A1S_2047	-	putative lysophospholipase
1978	 41.16	0	2387348..2387692	-	114	126642093	-	A1S_2048	-	hypothetical protein
1979	 39.00	0	2387808..2388407	-	199	126642094	-	A1S_2049	-	hypothetical protein
1980	 37.24	0	2388484..2389353	-	289	126642095	-	A1S_2050	-	UDP-N-acetylenolpyruvoylglucosamine reductase FAD-binding
1981	 38.60	0	2389538..2389936	-	132	126642096	-	A1S_2051	-	putative phosphotyrosine protein phosphatase
1982	 39.71	0	2390342..2391376	-	344	126642097	-	A1S_2052	-	hypothetical protein
1983	 40.77	0	2391935..2392969	+	344	126642098	-	A1S_2053	-	putative iron-containing alcohol dehydrogenase
1984	 37.10	0	2393059..2393403	+	114	126642099	-	A1S_2054	-	putative thioesterase
1985	 43.85	+1	2393452..2395524	-	690	126642100	-	A1S_2055	-	phospholipase C
1986	 40.66	0	2396004..2397914	-	636	126642101	-	A1S_2056	-	DNA polymerase III tau and gamma subunits (DNA elongation factor III)
1987	 40.87	0	2398286..2399692	-	468	126642102	-	A1S_2057	-	major facilitator superfamily methyl viologen resistance protein
1988	 37.69	0	2399940..2400467	+	175	126642103	-	A1S_2058	-	putative transcriptional regulator
1989	 42.19	0	2400515..2401564	-	349	126642104	-	A1S_2059	-	putative esterase
1990	 39.32	0	2401846..2402463	-	205	126642105	-	A1S_2060	-	putative dehydratase
1991	 41.86	0	2402775..2404052	-	425	126642106	fabG	A1S_2061	-	3-ketoacyl-(acyl-carrier-protein) reductase
1992	 43.10	0	2404681..2405970	+	429	126642107	-	A1S_2062	-	acetyl-CoA acetyltransferase
1993	 34.18	-1	2406038..2406508	-	156	126642108	-	A1S_2063	-	hypothetical protein
1994	 40.81	0	2406668..2407456	+	262	126642109	-	A1S_2064	-	LysR family transcriptional regulator
1995	 39.60	0	2407587..2408576	+	329	126642110	-	A1S_2065	-	transaldolase B
1996	 35.27	-1	2408733..2409299	+	188	126642111	-	A1S_2066	-	leucine export protein LeuE
1997	 41.03	0	2409336..2409764	-	142	126642112	-	A1S_2067	-	transcriptional regulatory protein
1998	 40.80	0	2410245..2411168	+	307	126642113	-	A1S_2068	-	putative benzoate membrane transport protein
1999	 40.28	0	2411242..2411874	-	210	126642114	-	A1S_2069	-	putative magesium transporter transmembrane protein
2000	 38.80	0	2411977..2414682	-	901	126642115	-	A1S_2070	-	magnesium-transporting ATPase MgtA
2001	 34.85	-1	2415297..2415692	-	131	126642116	-	A1S_2071	-	hypothetical protein
2002	 37.38	0	2416999..2417319	+	106	126642117	-	A1S_2072	-	universal stress family protein
2003	 37.35	0	2417720..2419162	+	480	126642118	-	A1S_2073	-	ABC transporter ATPase
2004	 29.23	-2	2419236..2419625	-	129	126642119	-	A1S_2074	-	hypothetical protein
2005	 39.14	0	2420396..2421394	-	332	126642120	-	A1S_2075	-	putative outer membrane protein
2006	 37.11	0	2421814..2422872	-	352	126642121	-	A1S_2076	-	putative outer membrane porin receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid uptake (fhuE)
2007	 42.92	0	2423196..2423915	-	239	126642122	-	A1S_2077	-	putative outer membrane porin receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid uptake (fhuE)
2008	 37.09	0	2424216..2424668	+	150	126642123	-	A1S_2078	-	acetyltransferase
2009	 38.02	0	2427162..2428334	-	390	126642124	-	A1S_2079	-	putative mechanosensitive ion channel
2010	 39.96	0	2429068..2430576	+	502	126642125	-	A1S_2080	-	putative siderophore receptor
2011	 39.35	0	2430687..2431118	+	143	126642126	-	A1S_2081	-	TonB-dependent siderophore receptor
2012	 34.64	-1	2431181..2431564	-	127	126642127	-	A1S_2082	-	putative transcriptional regulator
2013	 40.96	0	2433610..2434107	+	165	126642128	-	A1S_2083	-	AsnC family transcriptional regulator
2014	 40.36	0	2434136..2434633	-	165	126642129	-	A1S_2084	-	chorismate mutase
2015	 41.19	0	2434771..2435241	-	156	126642130	-	A1S_2085	-	oxidoreductase
2016	 41.47	0	2435464..2436225	-	253	126642131	-	A1S_2086	-	putative short chain dehydrogenase
2017	 40.11	0	2436233..2436778	-	181	126642132	-	A1S_2087	-	putative glutathione S-transferase
2018	 41.60	0	2437146..2437907	-	253	126642133	-	A1S_2088	-	hypothetical protein
2019	 40.62	0	2438156..2440474	-	772	126642134	-	A1S_2089	-	fimbrial usher protein
2020	 33.50	-1	2440625..2441239	-	204	126642135	-	A1S_2090	-	hypothetical protein
2021	 43.92	+1	2441402..2441845	-	147	126642136	-	A1S_2091	-	hypothetical protein
2022	 41.90	0	2442484..2444946	-	820	126642137	-	A1S_2092	-	aminopeptidase N
2023	 39.15	0	2445409..2445666	+	85	126642138	-	A1S_2093	-	hypothetical protein
2024	 37.64	0	2445884..2446975	+	363	126642139	-	A1S_2094	-	hypothetical protein
2025	 40.09	0	2447156..2447836	+	226	126642140	-	A1S_2095	-	hydoxyethylthiazole kinase
2026	 36.56	-1	2447958..2448236	-	92	126642141	-	A1S_2096	-	putative 5-carboxymethyl-2-hydroxymuconate delta isomerase
2027	 38.96	0	2448361..2449905	-	514	126642142	-	A1S_2097	-	putative helicase
2028	 44.83	+1	2450433..2451476	+	347	126642143	-	A1S_2098	-	putative alcohol dehydrogenase
2029	 38.20	0	2451672..2452226	+	184	126642144	-	A1S_2099	-	hypothetical protein
2030	 42.11	0	2452414..2452641	+	75	126642145	-	A1S_2100	-	hypothetical protein
2031	 41.91	0	2452638..2453570	-	310	126642146	-	A1S_2101	-	putative transcriptional regulator
2032	 43.87	+1	2454260..2455483	+	407	126642147	-	A1S_2102	-	aldehyde dehydrogenase 1
2033	 42.09	0	2455897..2457141	+	414	126642148	-	A1S_2103	-	putative transport protein
2034	 42.11	0	2457302..2458543	+	413	126642149	-	A1S_2104	-	ethanolamine ammonia-lyase heavy chain
2035	 41.67	0	2458554..2458877	+	107	126642150	-	A1S_2105	-	ethanolamine ammonia-lyase
2036	 40.04	0	2458922..2459368	+	148	126642151	-	A1S_2106	-	ethanolamine ammonia-lyase light chain
2037	 37.19	0	2459659..2460255	+	198	126642152	-	A1S_2107	-	glutamine amidotransferase
2038	 41.78	0	2460657..2462384	-	575	126642153	-	A1S_2108	-	glutaminyl-tRNA synthetase
2039	 40.68	0	2462709..2463062	+	117	126642154	-	A1S_2109	-	peptidyl-prolyl cis-trans isomerase precursor
2040	 37.20	0	2463306..2463797	+	163	126642155	-	A1S_2110	-	UDP-23-diacylglucosamine hydrolase
2041	 38.20	0	2464283..2464816	+	177	126642156	-	A1S_2111	-	dihydropteridine reductase
2042	 35.05	-1	2464986..2465627	-	213	126642157	-	A1S_2112	-	putative integral membrane protein
2043	 38.62	0	2466444..2467256	-	270	126642158	-	A1S_2113	-	delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
2044	 38.92	0	2467394..2468503	-	369	126642159	-	A1S_2114	-	methyl-directed mismatch repair enzyme
2045	 41.82	0	2468785..2469267	-	160	126642160	-	A1S_2115	-	methyl-directed mismatch repair enzyme
2046	 39.25	0	2469338..2469793	-	151	126642161	-	A1S_2116	-	hypothetical protein
2047	 35.91	-1	2470102..2470839	+	245	126642162	-	A1S_2117	-	putative pseudouridylate synthase
2048	 33.76	-1	2471026..2471259	+	77	126642163	-	A1S_2118	-	hypothetical protein
2049	 35.59	-1	2471357..2471800	+	147	126642164	-	A1S_2119	-	putative acetyltransferase
2050	 38.94	0	2471793..2472398	-	201	126642165	-	A1S_2120	-	16S rRNA pseudouridylate 516 synthase
2051	 40.08	0	2473049..2473522	+	157	126642166	-	A1S_2121	-	hypothetical protein
2052	 39.87	0	2473573..2474352	-	259	126642167	-	A1S_2122	-	transcriptional regulator
2053	 34.84	-1	2474719..2475513	-	264	126642168	-	A1S_2123	-	putative signal peptide
2054	 43.34	0	2476439..2477527	+	362	126642169	-	A1S_2124	-	major facilitator superfamily permease
40.16	MEAN

3.49	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.