IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1602	 38.68	0	1947817..1948845	+	342	126641717	-	A1S_1672	-	hypothetical protein
1603	 36.62	-1	1948964..1949968	+	334	126641718	-	A1S_1673	-	inner membrane permease protein
1604	 36.83	0	1950018..1950617	-	199	126641719	-	A1S_1674	-	hypothetical protein
1605	 35.06	-1	1950927..1951388	+	153	126641720	-	A1S_1675	-	hypothetical protein
1606	 42.48	0	1951602..1951907	+	101	126641721	-	A1S_1676	-	hypothetical protein
1607	 37.57	0	1952188..1953201	-	337	126641722	-	A1S_1677	-	putative porin precursor
1608	 41.43	0	1953549..1953869	-	106	126641723	-	A1S_1678	-	putative histidine triad family protein
1609	 37.21	0	1953981..1954238	-	85	126641724	-	A1S_1679	-	putative signal peptide
1610	 38.31	0	1955071..1955271	+	66	126641725	-	A1S_1680	-	hypothetical protein
1611	 32.78	-2	1956945..1957487	+	180	126641726	-	A1S_1681	-	putative methyltransferase
1612	 36.52	-1	1957568..1958446	-	292	126641727	-	A1S_1682	-	putative poly(R)-hydroxyalkanoic acid synthase
1613	 40.65	0	1958991..1959974	+	327	126641728	-	A1S_1683	-	O-succinylhomoserine sulfhydrylase
1614	 39.46	0	1960690..1960983	+	97	126641729	-	A1S_1684	-	hypothetical protein
1615	 41.81	0	1961071..1961589	+	172	126641730	-	A1S_1685	-	recombination protein gap repair
1616	 34.90	-1	1962063..1963019	+	318	126641731	-	A1S_1686	-	ribonuclease D
1617	 41.82	0	1964331..1964495	-	54	126641732	-	A1S_1687	-	transcriptional regulator
1618	 41.95	0	1964977..1965243	+	88	126641733	-	A1S_1688	-	hypothetical protein
1619	 40.14	0	1965344..1965622	+	92	126641734	-	A1S_1689	-	hypothetical protein
1620	 39.46	0	1965802..1966503	+	233	126641735	-	A1S_1690	-	putative ATPase
1621	 41.69	0	1966702..1967706	+	334	126641736	-	A1S_1691	-	hypothetical protein
1622	 39.97	0	1967743..1968948	+	401	162286734	-	A1S_1692	-	tryptophan synthase subunit beta
1623	 37.70	0	1969434..1970189	+	251	126641738	-	A1S_1693	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1624	 43.59	0	1970202..1971293	+	363	162286733	-	A1S_1694	-	chorismate synthase
1625	 37.32	0	1971390..1972619	-	409	126641740	-	A1S_1695	-	putative two-component response regulator
1626	 43.22	0	1973066..1973692	+	208	126641741	-	A1S_1696	-	hypothetical protein
1627	 41.24	0	1973858..1974679	-	273	126641742	-	A1S_1697	-	putative transcriptional regulator
1628	 39.73	0	1975035..1975769	-	244	126641743	-	A1S_1698	-	lipoyl synthase
1629	 45.23	+1	1976626..1977348	+	240	126641744	-	A1S_1699	-	acetoin:26-dichlorophenolindophenol oxidoreductase alpha subunit
1630	 44.51	+1	1977335..1978381	+	348	126641745	-	A1S_1700	-	acetoin:26-dichlorophenolindophenol oxidoreductase beta subunit
1631	 44.27	+1	1978428..1979918	+	496	126641746	-	A1S_1701	-	dihydrolipoamide acetyltransferase
1632	 42.86	0	1980181..1981020	+	279	126641747	-	A1S_1702	-	dihydrolipoamide dehydrogenase
1633	 41.21	0	1981170..1981334	+	54	126641748	-	A1S_1703	-	dihydrolipoamide dehydrogenase
1634	 43.01	0	1981475..1982146	+	223	126641749	-	A1S_1704	-	acetoin dehydrogenase
1635	 41.32	0	1982308..1983234	+	308	126641750	-	A1S_1705	-	putative (RR)-butanediol dehydrogenase
1636	 37.83	0	1983437..1984081	-	214	126641751	-	A1S_1706	-	hypothetical protein
1637	 38.89	0	1984262..1985323	-	353	126641752	-	A1S_1707	-	putative transcriptional regulator protein
1638	 38.07	0	1985726..1986421	+	231	126641753	-	A1S_1708	-	beta-lactamase-like protein
1639	 44.40	+1	1986722..1988086	+	454	126641754	-	A1S_1709	-	hypothetical protein
1640	 42.74	0	1988352..1989053	+	233	126641755	-	A1S_1710	-	hypothetical protein
1641	 38.51	0	1989280..1990167	+	295	126641756	-	A1S_1711	-	homoserine dehydrogenase putative
1642	 36.65	-1	1990200..1990922	-	240	126641757	-	A1S_1712	-	DMT family permease
1643	 40.13	0	1991359..1992138	+	259	126641758	-	A1S_1713	-	AraC family transcriptional regulator
1644	 42.09	0	1992135..1992431	-	98	126641759	-	A1S_1714	-	transcriptional regulatory protein
1645	 43.94	+1	1992773..1993234	+	153	126641760	-	A1S_1715	-	(Acyl-carrier protein) phosphodiesterase
1646	 41.26	0	1993318..1994541	-	407	126641761	-	A1S_1716	-	chromate transporter
1647	 42.46	0	1995115..1995651	+	178	126641762	-	A1S_1717	-	GntR family transcriptional regulator
1648	 41.64	0	1995680..1997413	+	577	126641763	-	A1S_1718	-	putative oxidoreductase
1649	 36.99	0	1997434..1997679	+	81	126641764	-	A1S_1719	-	4Fe-4S ferredoxin iron-sulfur binding
1650	 40.59	0	1997972..1999129	+	385	126641765	-	A1S_1720	-	hypothetical protein
1651	 41.30	0	1999341..2000018	+	225	126641766	-	A1S_1721	-	ABC-type nitrate/sulfonate/bicarbonate transport system permease component
1652	 37.76	0	2000272..2000859	+	195	126641767	-	A1S_1722	-	putative ATP-binding component of ABC transporter
1653	 40.36	0	2000958..2001854	+	298	126641768	-	A1S_1723	-	phycobiliprotein putative
1654	 40.58	0	2002159..2003304	-	381	126641769	-	A1S_1724	-	major facilitator superfamily alpha-ketoglutarate permease
1655	 37.42	0	2004120..2006174	+	684	126641770	-	A1S_1725	-	putative ferric siderophore receptor protein
1656	 36.44	-1	2006231..2007646	-	471	162286732	aspA	A1S_1726	-	aspartate ammonia-lyase
1657	 33.33	-1	2009465..2010232	+	255	126641772	-	A1S_1727	-	LysR family transcriptional regulator
1658	 37.18	0	2010536..2011366	+	276	126641773	-	A1S_1728	-	LysR family transcriptional regulator
1659	 41.61	0	2011427..2012392	-	321	126641774	-	A1S_1729	-	putative acetyl-CoA acetyltransferase
1660	 38.06	0	2012665..2013870	-	401	126641775	-	A1S_1730	-	short-chain fatty acid transporter
1661	 40.81	0	2014191..2014832	-	213	126641776	-	A1S_1731	-	acetoacetyl-CoA transferase beta subunit
1662	 38.07	0	2014834..2015319	-	161	126641777	-	A1S_1732	-	acetoacetyl-CoA transferase alpha subunit
1663	 33.64	-1	2015784..2016434	-	216	126641778	-	A1S_1733	-	LysR family transcriptional regulator
1664	 33.63	-1	2017552..2018226	+	224	126641779	-	A1S_1734	-	hypothetical protein
1665	 30.98	-2	2018575..2018829	-	84	126641780	-	A1S_1735	-	hypothetical protein
1666	 41.00	0	2020616..2021959	+	447	126641781	-	A1S_1736	-	hypothetical protein
1667	 40.62	0	2022107..2022778	+	223	126641782	-	A1S_1737	-	3-hydroxybutyrate dehydrogenase
1668	 35.95	-1	2023178..2024095	+	305	126641783	-	A1S_1738	-	putative transcriptional regulator
1669	 38.72	0	2024163..2024738	-	191	126641784	-	A1S_1739	-	major facilitator transporter
1670	 39.43	0	2024923..2025447	-	174	126641785	-	A1S_1740	-	benzoate transport
1671	 43.14	0	2025966..2027087	+	373	126641786	-	A1S_1741	-	putative dienelactone hydrolase
1672	 45.51	+1	2027262..2027885	+	207	126641787	-	A1S_1742	-	oxidoreductase
1673	 44.16	+1	2028013..2029167	+	384	126641788	-	A1S_1743	-	putative oxygenase subunit protein
1674	 43.18	0	2029331..2029726	+	131	126641789	-	A1S_1744	-	putative electron transfer flavoprotein
1675	 40.16	0	2029879..2030727	+	282	126641790	-	A1S_1745	-	putative signal peptide
1676	 37.43	0	2030784..2031662	-	292	126641791	-	A1S_1746	-	putative transcriptional regulator
1677	 39.86	0	2032292..2032567	-	91	126641792	-	A1S_1747	-	anthranilate dioxygenase reductase
1678	 37.04	0	2032830..2033261	+	143	126641793	-	A1S_1748	-	replication protein
1679	 34.03	-1	2034290..2036299	+	669	126641794	-	A1S_1749	-	ABC transporter-like protein
1680	 40.78	0	2036447..2039428	-	993	126641795	-	A1S_1750	-	AdeB
1681	 43.29	0	2039554..2039985	-	143	126641796	-	A1S_1751	-	AdeA membrane fusion protein
1682	 41.27	0	2040251..2040754	-	167	126641797	-	A1S_1752	-	AdeA membrane fusion protein
1683	 37.74	0	2040999..2041634	+	211	126641798	-	A1S_1753	-	AdeR
1684	 38.16	0	2041903..2042751	+	282	126641799	-	A1S_1754	-	AdeS
1685	 38.25	0	2043503..2044417	+	304	126641800	-	A1S_1755	-	AdeT
1686	 39.09	0	2044493..2045551	-	352	126641801	-	A1S_1756	-	AraC family transcriptional regulator
1687	 46.34	+1	2045710..2046624	+	304	126641802	-	A1S_1757	-	Alpha/beta hydrolase
1688	 46.42	+1	2046769..2047509	+	246	126641803	-	A1S_1758	-	Short-chain dehydrogenase/reductase SDR
1689	 39.61	0	2047777..2048397	+	206	126641804	-	A1S_1759	-	Short-chain dehydrogenase/reductase SDR
1690	 40.83	0	2049638..2050384	+	248	126641805	-	A1S_1760	-	hypothetical protein
1691	 37.94	0	2051254..2051709	-	151	126641806	-	A1S_1761	-	acetyltransferase
1692	 37.03	0	2052477..2053559	-	360	126641807	-	A1S_1762	-	hypothetical protein
1693	 39.25	0	2054413..2054784	-	123	126641808	-	A1S_1763	-	putative transcriptional regulator
1694	 37.80	0	2055690..2055935	-	81	126641809	-	A1S_1764	-	putative transcriptional regulator
1695	 38.67	0	2055995..2057062	-	355	126641810	-	A1S_1765	-	hypothetical protein
1696	 39.30	0	2058097..2058582	-	161	126641811	-	A1S_1766	-	hypothetical protein
1697	 43.84	+1	2058753..2059523	-	256	126641812	-	A1S_1767	-	putative acid phosphatase
1698	 40.47	0	2059851..2060915	-	354	126641813	-	A1S_1768	-	hypothetical protein
1699	 43.02	0	2061004..2062242	-	412	126641814	-	A1S_1769	-	RND efflux transporter
1700	 42.13	0	2062329..2063795	-	488	126641815	-	A1S_1770	-	hypothetical protein
1701	 37.38	0	2063912..2064628	-	238	126641816	-	A1S_1771	-	hypothetical protein
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.