IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1574	 40.03	0	1910054..1911262	-	402	126641689	-	A1S_1644	-	hypothetical protein
1575	 34.05	-1	1911664..1911942	-	92	126641690	-	A1S_1645	-	hypothetical protein
1576	 37.20	0	1912286..1912621	+	111	126641691	-	A1S_1646	-	hypothetical protein
1577	 36.16	-1	1913226..1914779	+	517	126641692	-	A1S_1647	-	putative siderophore biosynthesis protein
1578	 37.39	0	1914898..1916205	+	435	126641693	-	A1S_1648	-	putative lysine/ornithine N-monooxygenase
1579	 40.20	0	1916298..1917665	+	455	126641694	-	A1S_1649	-	RND efflux transporter
1580	 34.23	-1	1917677..1918348	+	223	126641695	-	A1S_1650	-	hypothetical protein
1581	 38.96	0	1918560..1919519	+	319	126641696	-	A1S_1651	-	hypothetical protein
1582	 36.42	-1	1919757..1921439	+	560	126641697	-	A1S_1652	-	hypothetical protein
1583	 33.81	-1	1921593..1922222	+	209	126641698	-	A1S_1653	-	hypothetical protein
1584	 35.92	-1	1922401..1922826	+	141	126641699	-	A1S_1654	-	putative demethylmenaquinone methyltransferase
1585	 38.33	0	1922990..1925230	+	746	126641700	-	A1S_1655	-	putative ferric siderophore receptor protein
1586	 36.33	-1	1925864..1927132	+	422	126641701	-	A1S_1656	-	hypothetical protein
1587	 37.28	0	1927717..1928223	+	168	126641702	-	A1S_1657	-	putative siderophore biosynthesis protein; putative acetyltransferase
1588	 36.43	-1	1928698..1930701	+	667	126641703	-	A1S_1658	-	haloacid dehalogenase-like hydrolase
1589	 39.56	0	1931489..1931938	+	149	126641704	-	A1S_1659	-	cobalbumin biosynthesis enzyme
1590	 43.00	0	1932189..1932995	+	268	126641705	-	A1S_1660	-	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
1591	 38.18	0	1933093..1933587	+	164	126641706	-	A1S_1661	-	fructose-26-bisphosphatase
1592	 37.88	0	1933916..1935280	+	454	126641707	-	A1S_1662	-	hypothetical protein
1593	 38.31	0	1935609..1936130	+	173	126641708	-	A1S_1663	-	cobalamin-5-phosphate synthase CobS
1594	 38.93	0	1936207..1937349	-	380	126641709	-	A1S_1664	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1595	 39.30	0	1937413..1938216	-	267	126641710	-	A1S_1665	-	hypothetical protein
1596	 35.37	-1	1938732..1940201	-	489	126641711	-	A1S_1666	-	hypothetical protein
1597	 38.04	0	1940643..1942682	-	679	126641712	-	A1S_1667	-	putative ferric hydroxamate siderophore receptor
1598	 37.86	0	1943072..1944175	+	367	126641713	-	A1S_1668	-	lipid A-disaccharide synthase
1599	 33.99	-1	1944172..1944630	-	152	126641714	-	A1S_1669	-	TetR family transcriptional regulator
1600	 40.11	0	1945061..1945960	+	299	126641715	-	A1S_1670	-	secretion protein HlyD
1601	 38.58	0	1945995..1947710	+	571	126641716	-	A1S_1671	-	PltJ
1602	 38.68	0	1947817..1948845	+	342	126641717	-	A1S_1672	-	hypothetical protein
1603	 36.62	-1	1948964..1949968	+	334	126641718	-	A1S_1673	-	inner membrane permease protein
1604	 36.83	0	1950018..1950617	-	199	126641719	-	A1S_1674	-	hypothetical protein
1605	 35.06	-1	1950927..1951388	+	153	126641720	-	A1S_1675	-	hypothetical protein
1606	 42.48	0	1951602..1951907	+	101	126641721	-	A1S_1676	-	hypothetical protein
1607	 37.57	0	1952188..1953201	-	337	126641722	-	A1S_1677	-	putative porin precursor
1608	 41.43	0	1953549..1953869	-	106	126641723	-	A1S_1678	-	putative histidine triad family protein
1609	 37.21	0	1953981..1954238	-	85	126641724	-	A1S_1679	-	putative signal peptide
1610	 38.31	0	1955071..1955271	+	66	126641725	-	A1S_1680	-	hypothetical protein
1611	 32.78	-2	1956945..1957487	+	180	126641726	-	A1S_1681	-	putative methyltransferase
1612	 36.52	-1	1957568..1958446	-	292	126641727	-	A1S_1682	-	putative poly(R)-hydroxyalkanoic acid synthase
1613	 40.65	0	1958991..1959974	+	327	126641728	-	A1S_1683	-	O-succinylhomoserine sulfhydrylase
1614	 39.46	0	1960690..1960983	+	97	126641729	-	A1S_1684	-	hypothetical protein
1615	 41.81	0	1961071..1961589	+	172	126641730	-	A1S_1685	-	recombination protein gap repair
1616	 34.90	-1	1962063..1963019	+	318	126641731	-	A1S_1686	-	ribonuclease D
1617	 41.82	0	1964331..1964495	-	54	126641732	-	A1S_1687	-	transcriptional regulator
1618	 41.95	0	1964977..1965243	+	88	126641733	-	A1S_1688	-	hypothetical protein
1619	 40.14	0	1965344..1965622	+	92	126641734	-	A1S_1689	-	hypothetical protein
1620	 39.46	0	1965802..1966503	+	233	126641735	-	A1S_1690	-	putative ATPase
1621	 41.69	0	1966702..1967706	+	334	126641736	-	A1S_1691	-	hypothetical protein
1622	 39.97	0	1967743..1968948	+	401	162286734	-	A1S_1692	-	tryptophan synthase subunit beta
1623	 37.70	0	1969434..1970189	+	251	126641738	-	A1S_1693	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1624	 43.59	0	1970202..1971293	+	363	162286733	-	A1S_1694	-	chorismate synthase
1625	 37.32	0	1971390..1972619	-	409	126641740	-	A1S_1695	-	putative two-component response regulator
1626	 43.22	0	1973066..1973692	+	208	126641741	-	A1S_1696	-	hypothetical protein
1627	 41.24	0	1973858..1974679	-	273	126641742	-	A1S_1697	-	putative transcriptional regulator
1628	 39.73	0	1975035..1975769	-	244	126641743	-	A1S_1698	-	lipoyl synthase
1629	 45.23	+1	1976626..1977348	+	240	126641744	-	A1S_1699	-	acetoin:26-dichlorophenolindophenol oxidoreductase alpha subunit
1630	 44.51	+1	1977335..1978381	+	348	126641745	-	A1S_1700	-	acetoin:26-dichlorophenolindophenol oxidoreductase beta subunit
1631	 44.27	+1	1978428..1979918	+	496	126641746	-	A1S_1701	-	dihydrolipoamide acetyltransferase
1632	 42.86	0	1980181..1981020	+	279	126641747	-	A1S_1702	-	dihydrolipoamide dehydrogenase
1633	 41.21	0	1981170..1981334	+	54	126641748	-	A1S_1703	-	dihydrolipoamide dehydrogenase
1634	 43.01	0	1981475..1982146	+	223	126641749	-	A1S_1704	-	acetoin dehydrogenase
1635	 41.32	0	1982308..1983234	+	308	126641750	-	A1S_1705	-	putative (RR)-butanediol dehydrogenase
1636	 37.83	0	1983437..1984081	-	214	126641751	-	A1S_1706	-	hypothetical protein
1637	 38.89	0	1984262..1985323	-	353	126641752	-	A1S_1707	-	putative transcriptional regulator protein
1638	 38.07	0	1985726..1986421	+	231	126641753	-	A1S_1708	-	beta-lactamase-like protein
1639	 44.40	+1	1986722..1988086	+	454	126641754	-	A1S_1709	-	hypothetical protein
1640	 42.74	0	1988352..1989053	+	233	126641755	-	A1S_1710	-	hypothetical protein
1641	 38.51	0	1989280..1990167	+	295	126641756	-	A1S_1711	-	homoserine dehydrogenase putative
1642	 36.65	-1	1990200..1990922	-	240	126641757	-	A1S_1712	-	DMT family permease
1643	 40.13	0	1991359..1992138	+	259	126641758	-	A1S_1713	-	AraC family transcriptional regulator
1644	 42.09	0	1992135..1992431	-	98	126641759	-	A1S_1714	-	transcriptional regulatory protein
1645	 43.94	+1	1992773..1993234	+	153	126641760	-	A1S_1715	-	(Acyl-carrier protein) phosphodiesterase
1646	 41.26	0	1993318..1994541	-	407	126641761	-	A1S_1716	-	chromate transporter
1647	 42.46	0	1995115..1995651	+	178	126641762	-	A1S_1717	-	GntR family transcriptional regulator
1648	 41.64	0	1995680..1997413	+	577	126641763	-	A1S_1718	-	putative oxidoreductase
1649	 36.99	0	1997434..1997679	+	81	126641764	-	A1S_1719	-	4Fe-4S ferredoxin iron-sulfur binding
1650	 40.59	0	1997972..1999129	+	385	126641765	-	A1S_1720	-	hypothetical protein
1651	 41.30	0	1999341..2000018	+	225	126641766	-	A1S_1721	-	ABC-type nitrate/sulfonate/bicarbonate transport system permease component
1652	 37.76	0	2000272..2000859	+	195	126641767	-	A1S_1722	-	putative ATP-binding component of ABC transporter
1653	 40.36	0	2000958..2001854	+	298	126641768	-	A1S_1723	-	phycobiliprotein putative
1654	 40.58	0	2002159..2003304	-	381	126641769	-	A1S_1724	-	major facilitator superfamily alpha-ketoglutarate permease
1655	 37.42	0	2004120..2006174	+	684	126641770	-	A1S_1725	-	putative ferric siderophore receptor protein
1656	 36.44	-1	2006231..2007646	-	471	162286732	aspA	A1S_1726	-	aspartate ammonia-lyase
1657	 33.33	-1	2009465..2010232	+	255	126641772	-	A1S_1727	-	LysR family transcriptional regulator
1658	 37.18	0	2010536..2011366	+	276	126641773	-	A1S_1728	-	LysR family transcriptional regulator
1659	 41.61	0	2011427..2012392	-	321	126641774	-	A1S_1729	-	putative acetyl-CoA acetyltransferase
1660	 38.06	0	2012665..2013870	-	401	126641775	-	A1S_1730	-	short-chain fatty acid transporter
1661	 40.81	0	2014191..2014832	-	213	126641776	-	A1S_1731	-	acetoacetyl-CoA transferase beta subunit
1662	 38.07	0	2014834..2015319	-	161	126641777	-	A1S_1732	-	acetoacetyl-CoA transferase alpha subunit
1663	 33.64	-1	2015784..2016434	-	216	126641778	-	A1S_1733	-	LysR family transcriptional regulator
1664	 33.63	-1	2017552..2018226	+	224	126641779	-	A1S_1734	-	hypothetical protein
1665	 30.98	-2	2018575..2018829	-	84	126641780	-	A1S_1735	-	hypothetical protein
1666	 41.00	0	2020616..2021959	+	447	126641781	-	A1S_1736	-	hypothetical protein
1667	 40.62	0	2022107..2022778	+	223	126641782	-	A1S_1737	-	3-hydroxybutyrate dehydrogenase
1668	 35.95	-1	2023178..2024095	+	305	126641783	-	A1S_1738	-	putative transcriptional regulator
1669	 38.72	0	2024163..2024738	-	191	126641784	-	A1S_1739	-	major facilitator transporter
1670	 39.43	0	2024923..2025447	-	174	126641785	-	A1S_1740	-	benzoate transport
1671	 43.14	0	2025966..2027087	+	373	126641786	-	A1S_1741	-	putative dienelactone hydrolase
1672	 45.51	+1	2027262..2027885	+	207	126641787	-	A1S_1742	-	oxidoreductase
1673	 44.16	+1	2028013..2029167	+	384	126641788	-	A1S_1743	-	putative oxygenase subunit protein
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.