IslandPathversion 1.0

IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.16 STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1483	 39.45	0	1806065..1806571	+	168	126641598	-	A1S_1553	-	MotA/TolQ/ExbB proton channel
1484	 39.15	0	1806638..1807015	+	125	126641599	-	A1S_1554	-	putative biopolymer transport protein ExbD/TolR
1485	 38.77	0	1807102..1808739	+	545	126641600	-	A1S_1555	-	lipid transport protein flippase
1486	 37.66	0	1809036..1809752	+	238	126641601	-	A1S_1556	-	tetraacyldisaccharide 4'-kinase
1487	 40.16	0	1809762..1810523	+	253	162286735	-	A1S_1557	-	3-deoxy-manno-octulosonate cytidylyltransferase
1488	 34.45	-1	1810535..1811515	+	326	126641603	-	A1S_1558	-	DNA polymerase III delta prime subunit
1489	 37.36	0	1811596..1811868	+	90	126641604	-	A1S_1559	-	type 4 fimbrial biogenesis protein
1490	 38.74	0	1811994..1812659	+	221	126641605	-	A1S_1560	-	putative deoxyribonuclease
1491	 38.31	0	1812784..1813305	+	173	126641606	-	A1S_1561	-	putative transcriptional regulator
1492	 33.73	-1	1813369..1813869	+	166	126641607	-	A1S_1562	-	putative general secretion pathway protein G precursor
1493	 37.36	0	1813892..1814239	+	115	126641608	-	A1S_1563	-	general secretion pathway protein I precursor
1494	 34.94	-1	1814443..1814940	+	165	126641609	-	A1S_1564	-	general secretion pathway protein J precursor
1495	 35.34	-1	1815051..1815899	+	282	126641610	-	A1S_1565	-	general secretion pathway protein K
1496	 36.18	-1	1816270..1816725	+	151	126641611	-	A1S_1566	-	putative 6-pyruvoyl-tetrahydropterin synthase
1497	 37.54	0	1816872..1817489	+	205	126641612	-	A1S_1567	-	uracil-DNA glycosylase
1498	 41.48	0	1817567..1818610	+	347	126641613	-	A1S_1568	-	putative enoyl-CoA hydratase/isomerase
1499	 36.27	-1	1818713..1819120	+	135	126641614	-	A1S_1569	-	putative deaminase
1500	 38.44	0	1819301..1819633	+	110	126641615	-	A1S_1570	-	hypothetical protein
1501	 40.88	0	1819758..1820327	+	189	126641616	-	A1S_1571	-	cytidylate kinase
1502	 41.67	0	1820666..1822105	+	479	126641617	rpsA	A1S_1572	-	30S ribosomal protein S1
1503	 41.76	0	1822292..1822564	+	90	126641618	-	A1S_1573	-	integration host factor beta subunit
1504	 35.71	-1	1822703..1822954	+	83	126641619	-	A1S_1574	-	hypothetical protein
1505	 37.61	0	1823117..1823818	+	233	126641620	-	A1S_1575	-	orotidine-5'-phosphate decarboxylase
1506	 34.54	-1	1823815..1824726	-	303	126641621	-	A1S_1576	-	hypothetical protein
1507	 35.43	-1	1824776..1826209	-	477	126641622	-	A1S_1577	-	putative flavin-binding monooxygenase
1508	 34.74	-1	1826682..1827464	+	260	126641623	-	A1S_1578	-	putative transcriptional regulator
1509	 36.48	-1	1827769..1828689	+	306	126641624	-	A1S_1579	-	putative ATPase
1510	 39.12	0	1829393..1829824	+	143	126641625	-	A1S_1580	-	integrase
1511	 40.99	0	1830300..1830743	-	147	126641626	-	A1S_1581	-	methyltransferase putative
1512	 39.17	0	1833406..1834005	-	199	126641627	-	A1S_1582	-	Cro/CI family transcriptional regulator
1513	 39.06	0	1834443..1834739	+	98	126641628	-	A1S_1583	-	hypothetical protein
1514	 39.60	0	1834826..1835623	+	265	126641629	-	A1S_1584	-	hypothetical protein
1515	 40.41	0	1835683..1836954	+	423	126641630	-	A1S_1585	-	putative replicative DNA helicase
1516	 48.33	+2	1842309..1842668	+	119	126641631	-	A1S_1586	-	EsvK1
1517	 37.78	0	1843587..1844036	+	149	126641632	-	A1S_1587	-	EsvK2
1518	 43.16	0	1844308..1845213	+	301	126641633	-	A1S_1588	-	Phage terminase-like protein large subunit
1519	 41.32	0	1845498..1846436	+	312	126641634	-	A1S_1589	-	hypothetical protein
1520	 44.52	+1	1846645..1847091	+	148	126641635	-	A1S_1590	-	peptidase U35 phage prohead HK97
1521	 44.02	+1	1847237..1848256	+	339	126641636	-	A1S_1591	-	phage major capsid protein HK97
1522	 43.14	0	1848766..1849122	+	118	126641637	-	A1S_1592	-	putative Phage head-tail adaptor
1523	 43.24	0	1849168..1849611	+	147	126641638	-	A1S_1593	-	hypothetical protein
1524	 43.00	0	1849686..1849985	+	99	126641639	-	A1S_1594	-	hypothetical protein
1525	 41.90	0	1850115..1850534	+	139	126641640	-	A1S_1595	-	hypothetical protein
1526	 42.81	0	1851946..1852779	+	277	126641641	-	A1S_1596	-	hypothetical protein
1527	 39.89	0	1853088..1855268	+	726	126641642	-	A1S_1597	-	lambda family phage tail tape measure protein
1528	 38.43	0	1856802..1859429	+	875	126641643	-	A1S_1598	-	hypothetical protein
1529	 39.19	0	1859604..1861346	+	580	126641644	-	A1S_1599	-	hypothetical protein
1530	 42.17	0	1862455..1862952	+	165	126641645	-	A1S_1600	-	lysozyme
1531	 38.22	0	1864364..1866370	+	668	126641646	-	A1S_1601	-	malate synthase G
1532	 33.01	-2	1866614..1866922	+	102	126641647	-	A1S_1602	-	hypothetical protein
1533	 38.65	0	1866989..1867402	-	137	126641648	-	A1S_1603	-	biopolymer transport protein ExbD/TolR
1534	 39.02	0	1867422..1867808	-	128	126641649	-	A1S_1604	-	biopolymer transport protein ExbD/TolR
1535	 41.38	0	1867860..1868468	-	202	126641650	-	A1S_1605	-	biopolymer transport proteins
1536	 37.55	0	1869607..1870104	-	165	126641651	-	A1S_1606	-	hypothetical protein
1537	 40.07	0	1870353..1872221	-	622	126641652	-	A1S_1607	-	TonB-dependent receptor
1538	 37.65	0	1873228..1874871	+	547	126641653	-	A1S_1608	-	heme-binding protein A precursor
1539	 40.32	0	1875166..1876710	+	514	126641654	-	A1S_1609	-	heme-binding protein A precursor
1540	 39.23	0	1876711..1878744	+	677	126641655	-	A1S_1610	-	Zn-dependent oligopeptidase
1541	 37.99	0	1878880..1879695	+	271	126641656	-	A1S_1611	-	ABC-type dipeptide/oligopeptide/nickel transport systems permease components
1542	 39.61	0	1879778..1880845	+	355	126641657	-	A1S_1612	-	ABC-type dipeptide/oligopeptide/nickel transport systems permease components
1543	 40.50	0	1881041..1882588	+	515	126641658	-	A1S_1613	-	putative ABC transporter ATP-binding protein
1544	 39.55	0	1882696..1883355	+	219	126641659	-	A1S_1614	-	hypothetical protein
1545	 35.57	-1	1884363..1884944	+	193	126641660	-	A1S_1615	-	PAPS (adenosine 3'-phosphate 5'-phosphosulfate) x
1546	 40.61	0	1885050..1885736	+	228	126641661	-	A1S_1616	-	hypothetical protein
1547	 42.32	0	1885792..1886058	-	88	126641662	-	A1S_1617	-	30S ribosomal protein S20
1548	 33.33	-1	1886469..1886936	+	155	126641663	-	A1S_1618	-	hypothetical protein
1549	 39.86	0	1887027..1887455	+	142	126641664	-	A1S_1619	-	ribonuclease activity regulator protein RraA
1550	 36.38	-1	1887639..1888262	+	207	126641665	-	A1S_1620	-	hypothetical protein
1551	 37.70	0	1888540..1889340	+	266	126641666	-	A1S_1621	-	putative iron-dependent peroxidase
1552	 29.91	-2	1889544..1889777	+	77	126641667	-	A1S_1622	-	hypothetical protein
1553	 39.94	0	1890209..1893373	+	1054	126641668	-	A1S_1623	-	transcription-repair coupling protein
1554	 42.78	0	1893649..1894008	+	119	126641669	-	A1S_1624	-	hypothetical protein
1555	 34.68	-1	1894121..1894939	+	272	126641670	-	A1S_1625	-	putative adenylate or guanylate cyclase
1556	 36.05	-1	1895019..1895534	+	171	126641671	-	A1S_1626	-	putative adenylate or guanylate cyclase
1557	 38.15	0	1895581..1895829	-	82	126641672	-	A1S_1627	-	hypothetical protein
1558	 41.10	0	1895938..1897533	-	531	126641673	hscA	A1S_1628	-	chaperone protein HscA
1559	 35.38	-1	1897836..1898324	-	162	126641674	-	A1S_1629	-	co-chaperone protein (Hsc20)
1560	 35.02	-1	1898440..1898676	-	78	126641675	-	A1S_1630	-	hypothetical protein
1561	 39.39	0	1898791..1899087	-	98	126641676	-	A1S_1631	-	iron-binding protein
1562	 40.94	0	1899244..1899519	-	91	126641677	-	A1S_1632	-	cysteine desulfurase
1563	 40.42	0	1899591..1900394	-	267	126641678	-	A1S_1633	-	cysteine desulfurase
1564	 42.34	0	1900462..1900905	-	147	126641679	-	A1S_1634	-	iscRSUA operon repressor
1565	 35.93	-1	1901046..1901507	-	153	126641680	-	A1S_1635	-	hypothetical protein
1566	 34.43	-1	1901904..1902359	+	151	126641681	-	A1S_1636	-	putative poly(hydroxyalcanoate) granule associated protein
1567	 38.46	0	1902529..1902801	+	90	126641682	-	A1S_1637	-	DNA-binding protein HU-beta
1568	 37.51	0	1903201..1904061	+	286	126641683	-	A1S_1638	-	peptidyl-prolyl cis-trans isomerase precursor
1569	 39.59	0	1904257..1904799	+	180	126641684	-	A1S_1639	-	peptidyl-prolyl cis-trans isomerase precursor
1570	 36.62	-1	1904838..1905629	-	263	126641685	-	A1S_1640	-	transcriptional regulator
1571	 37.11	0	1906059..1907198	+	379	126641686	-	A1S_1641	-	alkane 1-monooxygenase
1572	 43.55	0	1907314..1908390	-	358	126641687	-	A1S_1642	-	putative acyl-CoA dehydrogenase
1573	 39.94	0	1908541..1909584	-	347	126641688	-	A1S_1643	-	putative acyl-CoA dehydrogenase
1574	 40.03	0	1910054..1911262	-	402	126641689	-	A1S_1644	-	hypothetical protein
1575	 34.05	-1	1911664..1911942	-	92	126641690	-	A1S_1645	-	hypothetical protein
1576	 37.20	0	1912286..1912621	+	111	126641691	-	A1S_1646	-	hypothetical protein
1577	 36.16	-1	1913226..1914779	+	517	126641692	-	A1S_1647	-	putative siderophore biosynthesis protein
1578	 37.39	0	1914898..1916205	+	435	126641693	-	A1S_1648	-	putative lysine/ornithine N-monooxygenase
1579	 40.20	0	1916298..1917665	+	455	126641694	-	A1S_1649	-	RND efflux transporter
1580	 34.23	-1	1917677..1918348	+	223	126641695	-	A1S_1650	-	hypothetical protein
1581	 38.96	0	1918560..1919519	+	319	126641696	-	A1S_1651	-	hypothetical protein
1582	 36.42	-1	1919757..1921439	+	560	126641697	-	A1S_1652	-	hypothetical protein
40.16	MEAN

3.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.