Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome NC_010336 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 167627348 Common - hydroxy/aromatic amino acid permease (HAAAP) family protein Fphi_1123 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 167627495 Common - glycosyl transferase, family 2 Fphi_1269 172 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 167626301 Common - hypothetical protein Fphi_0080 89 COG2308 COG2308, Uncharacterized conserved protein Function unknown 167626461 Common - hypothetical protein Fphi_0244 28 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 167627590 Common - intracellular growth locus protein A Fphi_1364 46 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 167627906 Common - hypothetical protein Fphi_1680 48 COG0354 COG0354, Predicted aminomethyltransferase related to GcvT General function prediction only 167627849 Common - ThiF family protein Fphi_1624 222 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 167626639 Common - Methenyltetrahydrofolate cyclohydrolase Fphi_0420 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 167627886 Common - glutaredoxin like protein Fphi_1660 24 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 167626455 Common - DNA-formamidopyrimidine glycosylase Fphi_0238 182 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 167627010 Pathogen - hypothetical protein Fphi_0788 1 COG1289 COG1289, Predicted membrane protein Function unknown 167626794 Common - 50S ribosomal protein L5 Fphi_0575 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 167626702 Pathogen - hypothetical protein Fphi_0483 1 None None None 167628063 Common - hypothetical protein Fphi_1835 6 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 167627294 Common - hypothetical protein Fphi_1070 12 COG2976 COG2976, Uncharacterized protein conserved in bacteria Function unknown 167626628 Common - hypothetical protein Fphi_0409 5 None None None 167626928 Common - rhodanese-related sulfurtransferase Fphi_0706 90 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 167627116 Common - GTP-binding protein Fphi_0892 228 COG0536 Obg, Predicted GTPase General function prediction only 167627761 Common - Endopeptidase La Fphi_1534 211 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 167627358 Common - DNA mismatch repair protein MutS Fphi_1133 203 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 167627363 Common - glucokinase regulatory protein Fphi_1138 87 COG2103 COG2103, Predicted sugar phosphate isomerase General function prediction only 167627764 Common - tRNA isopentenyltransferase Fphi_1537 213 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 167627872 Common - hypothetical protein Fphi_1646 27 COG5505 COG5505, Predicted integral membrane protein Function unknown 167627772 Common - ATP/GTP-binding protein Fphi_1545 176 COG0218 COG0218, Predicted GTPase General function prediction only 167626497 Common - Arginine--tRNA ligase Fphi_0280 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 167626764 Common - hypothetical protein Fphi_0545 14 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 167627707 Common - haloacid dehalogenase-like hydrolase Fphi_1481 48 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 167627337 Common - hypothetical protein Fphi_1112 41 COG0398 COG0398, Uncharacterized conserved protein Function unknown 167626589 Common - metallopeptidase, M50B family Fphi_0372 76 COG1994 SpoIVFB, Zn-dependent proteases General function prediction only 167627043 Common - high-affinity nickel-transporter Fphi_0820 40 COG3376 HoxN, High-affinity nickel permease Inorganic ion transport and metabolism 167627171 Common - transcription elongation factor Fphi_0947 216 COG0195 NusA, Transcription elongation factor Transcription 167627341 Pathogen - hypothetical protein Fphi_1116 1 None None None 167626356 Pathogen - hypothetical protein Fphi_0134 1 None None None 167627169 Common - Uroporphyrinogen decarboxylase Fphi_0945 181 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 167626261 Common - sodium-dicarboxylate symporter family protein Fphi_0040 163 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 167627008 Pathogen - hypothetical protein Fphi_0786 1 None None None 167626580 Common - putative cold-shock DNA-binding domain protein Fphi_0362 178 COG1278 CspC, Cold shock proteins Transcription 167628057 Common - putative transcriptional regulator, XRE family Fphi_1829 38 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 167626345 Common - hypothetical protein Fphi_0123 135 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 167626871 Common - DNA polymerase III, delta subunit Fphi_0651 66 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 167626367 Common - ribosomal protein L27 Fphi_0145 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 167627488 Common - glycosyl transferase, group 1 Fphi_1262 27 COG3754 RgpF, Lipopolysaccharide biosynthesis protein Cell envelope biogenesis, outer membrane 167627976 Common - integrase, catalytic region Fphi_1750 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626490 Common - acetyl-CoA carboxylase, biotin carboxylase subunit Fphi_0273 235 COG0439 AccC, Biotin carboxylase Lipid metabolism 167626280 Pathogen - hypothetical protein Fphi_0059 1 None None None 167626593 Common - transposase for IS1106 Fphi_0375 46 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 167628004 Common - DNA-(apurinic or apyrimidinic site) lyase Fphi_1776 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 167627017 Common - Signal transduction histidine kinase-like protein Fphi_0794 30 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 167627626 Common - protoporphyrinogen oxidase Fphi_1400 7 COG1232 HemY, Protoporphyrinogen oxidase Coenzyme metabolism 167626621 Common - hypothetical protein Fphi_0402 34 COG3240 COG3240, Phospholipase/lecithinase/hemolysin Lipid metabolism / General function prediction only 167627425 Common - beta-hydroxyacyl-ACP dehydratase Fphi_1199 185 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 167627436 Common - Signal peptidase I Fphi_1210 209 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 167626486 Common - biotin-(acetyl-CoA-carboxylase) ligase Fphi_0269 188 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 167626952 Common - hypothetical protein Fphi_0729 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 167626276 Common - oligoketide cyclase/lipid transport protein Fphi_0055 102 COG2867 COG2867, Oligoketide cyclase/lipid transport protein Lipid metabolism 167627682 Pathogen - hypothetical protein Fphi_1456 1 None None None 167627662 Pathogen - hypothetical protein Fphi_1436 1 None None None 167627779 Common - hypothetical protein Fphi_1552 76 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 167626890 Common - competence protein Fphi_0669 7 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 167627481 Common - ABC-type polysaccharide/polyol phosphate transport system ATPase component-like protein Fphi_1255 249 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 167626519 Common - hypothetical protein Fphi_0302 13 COG1289 COG1289, Predicted membrane protein Function unknown 167627724 Common - hydroxy/aromatic amino acid permease (HAAAP) family protein Fphi_1498 11 None None None 167627434 Common - Pyrroline-5-carboxylate reductase Fphi_1208 209 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 167627234 Common - disulfide bond formation protein Fphi_1009 12 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 167626362 Common - integrase, catalytic region Fphi_0140 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627737 Common - hypothetical protein Fphi_1511 3 None None None 167627397 Common - dehydrogenase Fphi_1172 12 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 167626651 Common - integrase, catalytic region Fphi_0432 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627804 Common - Ribose-phosphate diphosphokinase Fphi_1579 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 167626963 Pathogen - hypothetical protein Fphi_0742 1 None None None 167626981 Common - hypothetical protein Fphi_0759 185 COG0759 COG0759, Uncharacterized conserved protein Function unknown 167627307 Common - hypothetical protein Fphi_1083 2 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 167627911 Common - 30S ribosomal protein S18 Fphi_1685 215 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 167627006 Common - hypothetical protein Fphi_0784 26 None None None 167627231 Common - major facilitator superfamily (MFS) transport protein Fphi_1006 76 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 167626295 Common - Exodeoxyribonuclease VII Fphi_0074 202 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 167627827 Common - heat shock protein 15 (HSP15) Fphi_1602 96 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 167626823 Common - glutamyl-tRNA synthetase Fphi_0603 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 167626234 Pathogen - hypothetical protein Fphi_0013 1 None None None 167626936 Common - riboflavin synthase, alpha subunit Fphi_0714 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 167628135 Pathogen - hypothetical protein Fphi_1910 1 None None None 167626999 Common - D-tyrosyl-tRNA(Tyr) deacylase Fphi_0777 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 167626690 Common - group A colicin translocation; TolQ protein Fphi_0471 146 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 167626868 Common - IMP cyclohydrolase Fphi_0648 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 167627617 Common - hypothetical protein Fphi_1391 5 COG1846 MarR, Transcriptional regulators Transcription 167627107 Common - hexose phosphate transport protein Fphi_0883 45 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 167627533 Common - hypothetical protein Fphi_1307 84 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 167626529 Common - homoserine kinase Fphi_0312 93 COG0083 ThrB, Homoserine kinase Amino acid transport and metabolism 167627095 Pathogen - hypothetical protein Fphi_0871 1 None None None 167626509 Common - glycosyl transferase, group 2 family protein Fphi_0292 155 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 167626240 Common - GTP-binding protein Fphi_0019 98 COG1161 COG1161, Predicted GTPases General function prediction only 167627897 Common - hypothetical protein Fphi_1671 200 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 167626742 Pathogen - hypothetical protein Fphi_0523 1 None None None 167627797 Common - hypothetical protein Fphi_1570 5 None None None 167626502 Common - hypothetical protein Fphi_0285 102 COG1534 COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein Translation, ribosomal structure and biogenesis 167626959 Common - inorganic phosphate transporter (PiT) family protein Fphi_0737 169 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 167627946 Common - CBS domain pair protein Fphi_1720 13 None None None 167626643 Common - type IV pili, pilus assembly protein Fphi_0424 2 COG4969 PilA, Tfp pilus assembly protein, major pilin PilA Cell motility and secretion / Intracellular trafficking and secretion 167626259 Common - 2-alkenal reductase Fphi_0038 110 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 167627988 Common - SufS activator complex, SufD subunit Fphi_1761 165 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 167628013 Common - hypothetical protein Fphi_1785 70 COG1434 COG1434, Uncharacterized conserved protein Function unknown 167627302 Common - conserved hypothetical exporter Fphi_1078 50 COG4258 COG4258, Predicted exporter General function prediction only 167627373 Common - hypothetical protein Fphi_1148 2 None None None 167627260 Common - hypothetical protein Fphi_1037 86 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 167627877 Pathogen - hypothetical protein Fphi_1651 1 None None None 167628069 Pathogen - hypothetical protein Fphi_1840 1 None None None 167626538 Common - hypothetical protein Fphi_0321 2 None None None 167626818 Common - 30S ribosomal protein S2 Fphi_0598 226 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 167627292 Common - drug:H+ antiporter-1 (DHA1) family protein Fphi_1068 189 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167627075 Common - fkbp-type peptidyl-prolyl cis-trans isomerase family protein Fphi_0851 124 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 167628009 Common - hypothetical protein Fphi_1781 37 COG0393 COG0393, Uncharacterized conserved protein Function unknown 167626407 Common - integrase, catalytic region Fphi_0189 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627654 Common - hypothetical protein Fphi_1427 2 None None None 167626522 Common - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase Fphi_0305 211 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 167627242 Common - nucleoside permease NUP family protein Fphi_1017 68 COG1972 NupC, Nucleoside permease Nucleotide transport and metabolism 167628075 Pathogen - hypothetical protein Fphi_1846 3 COG1816 Add, Adenosine deaminase Nucleotide transport and metabolism 167628085 Pathogen - hypothetical protein Fphi_1858 1 None None None 167627786 Common - lipoprotein Fphi_1559 11 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 167627744 Pathogen - hypothetical protein Fphi_1518 1 None None None 167627224 Common - cytochrome bd-II terminal oxidase subunit II Fphi_0999 148 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 167626781 Common - 50S ribosomal protein L17 Fphi_0562 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 167626474 Common - transposase Fphi_0257 67 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 167627316 Common - 3-oxoacyl-(acyl-carrier-protein) reductase, putative Fphi_1092 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 167627094 Common - Cl-:H+ antiporter Fphi_0870 160 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 167628026 Common - adenosylmethionine-8-amino-7-oxononanoate aminotransferase Fphi_1798 236 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 167626684 Common - 2-alkenal reductase Fphi_0465 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 167627064 Common - putative Trp operon repressor Fphi_0840 6 COG2973 TrpR, Trp operon repressor Transcription 167626440 Common - nicotinamide mononucleotide transporter Fphi_0223 41 COG3201 PnuC, Nicotinamide mononucleotide transporter Coenzyme metabolism 167626675 Common - hypothetical protein Fphi_0456 9 None None None 167627154 Common - NADH dehydrogenase (quinone) Fphi_0930 191 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 167627022 Common - integrase, catalytic region Fphi_0799 62 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627415 Common - hypothetical protein Fphi_1189 27 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 167626550 Common - O-acetylhomoserine aminocarboxypropyltransferase Fphi_0333 207 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 167627361 Pathogen - pilus assembly protein Fphi_1136 1 COG4966 PilW, Tfp pilus assembly protein PilW Cell motility and secretion / Intracellular trafficking and secretion 167626762 Common - Glutamate--cysteine ligase Fphi_0543 58 COG2918 GshA, Gamma-glutamylcysteine synthetase Coenzyme metabolism 167626559 Common - Lysine decarboxylase Fphi_0341 88 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 167626560 Common - ABC transporter, ATPase component Fphi_0342 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 167627922 Common - peptidyl-prolyl cis-trans isomerase family protein Fphi_1696 76 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 167627215 Common - transcriptional regulator, LysR family Fphi_0990 11 COG0583 LysR, Transcriptional regulator Transcription 167628034 Common - Acetoacetate decarboxylase Fphi_1806 18 COG4689 Adc, Acetoacetate decarboxylase Secondary metabolites biosynthesis, transport, and catabolism 167626571 Common - hypothetical protein Fphi_0353 83 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626636 Common - phosphoribosylglycinamide formyltransferase Fphi_0417 224 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 167627713 Common - capsule biosynthesis protein CapC Fphi_1487 8 None None None 167627027 Pathogen - Acid phosphatase Fphi_0804 3 None None None 167626849 Pathogen - hypothetical protein Fphi_0629 1 None None None 167627853 Pathogen - hypothetical protein Fphi_1628 1 None None None 167627244 Common - dTMP kinase Fphi_1019 230 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 167626392 Common - cytidine deaminase Fphi_0170 114 COG0295 Cdd, Cytidine deaminase Nucleotide transport and metabolism 167628016 Common - aldo/keto reductase family protein Fphi_1788 196 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 167627356 Common - aromatic amino acid transporter of the HAAAP family Fphi_1131 31 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 167627806 Common - domain of unknown function protein Fphi_1581 219 COG4536 CorB, Putative Mg2+ and Co2+ transporter CorB Inorganic ion transport and metabolism 167627323 Common - co-chaperonin GroES (HSP10) Fphi_1098 216 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 167627903 Common - Leucyl aminopeptidase Fphi_1677 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 167627267 Common - 50S ribosomal protein L10 Fphi_1044 213 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 167626755 Pathogen - lipoprotein, putative Fphi_0536 1 None None None 167627938 Pathogen - hypothetical protein Fphi_1712 1 COG1934 COG1934, Uncharacterized protein conserved in bacteria Function unknown 167626902 Common - monovalent cation:proton antiporter Fphi_0681 86 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 167626771 Common - Argininosuccinate synthase Fphi_0552 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 167627465 Common - long chain fatty acid CoA ligase Fphi_1239 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 167627395 Common - acylneuraminate cytidylyltransferase Fphi_1170 78 COG1083 NeuA, CMP-N-acetylneuraminic acid synthetase Cell envelope biogenesis, outer membrane 167627749 Pathogen - hypothetical protein Fphi_1917 1 None None None 167627739 Common - preprotein translocase, subunit D, membrane protein Fphi_1513 216 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 167626447 Common - 3-deoxy-8-phosphooctulonate synthase Fphi_0230 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 167626855 Common - polar amino acid uptake transporter Fphi_0635 88 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 167626925 Common - regulatory protein RecX Fphi_0703 49 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 167628101 Pathogen - methylation protein-like protein Fphi_1874 1 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 167627278 Common - 50S ribosomal protein L19 Fphi_1055 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 167626805 Common - 50S ribosomal protein L4 Fphi_0585 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 167626456 Common - glutamine amidotransferase, SNO family Fphi_0239 85 COG0311 PDX2, Predicted glutamine amidotransferase involved in pyridoxine biosynthesis Coenzyme metabolism 167626841 Common - Pyroglutamyl-peptidase I Fphi_0621 55 COG2039 Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) Posttranslational modification, protein turnover, chaperones 167626462 Pathogen - outer membrane protein of unknown function Fphi_0245 1 None None None 167626744 Common - glycosyl transferase, group 2 Fphi_0525 63 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 167627403 Common - hypothetical protein Fphi_1177 2 None None None 167626995 Common - Alkaline phosphatase Fphi_0773 81 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 167627564 Common - DNA ligase (NAD(+)) Fphi_1338 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 167626438 Common - Phosphopyruvate hydratase Fphi_0221 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 167626600 Common - Glucokinase Fphi_0381 91 COG0837 Glk, Glucokinase Carbohydrate transport and metabolism 167627142 Common - GDSL-like lipolytic enzyme Fphi_0918 28 COG3240 COG3240, Phospholipase/lecithinase/hemolysin Lipid metabolism / General function prediction only 167627271 Pathogen - hypothetical protein Fphi_1048 1 COG5416 COG5416, Uncharacterized integral membrane protein Function unknown 167627799 Common - hypothetical protein Fphi_1572 12 COG4337 COG4337, Uncharacterized protein conserved in bacteria Function unknown 167626919 Common - major facilitator superfamily (MFS_1) transporter Fphi_0697 20 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 167626866 Common - Hypoxanthine phosphoribosyltransferase Fphi_0646 150 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 167627121 Pathogen - hypothetical protein Fphi_0897 1 None None None 167627352 Pathogen - hypothetical protein Fphi_1127 1 None None None 167626400 Pathogen - hypothetical protein Fphi_0178 1 None None None 167627181 Common - ATP synthase, F0 sector, subunit C Fphi_0957 68 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 167627056 Common - hypothetical protein Fphi_0832 2 None None None 167627647 Common - competence lipoprotein ComL Fphi_1421 118 COG4105 ComL, DNA uptake lipoprotein General function prediction only 167627178 Common - major facilitator superfamily (MFS) transport protein Fphi_0954 88 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 167626909 Common - hypothetical protein Fphi_0687 4 COG4391 COG4391, Uncharacterized protein conserved in bacteria Function unknown 167628114 Common - endonuclease Fphi_1887 39 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 167627829 Common - hypothetical protein Fphi_1604 44 COG1289 COG1289, Predicted membrane protein Function unknown 167626826 Common - 6,7-dihydropteridine reductase Fphi_0606 80 COG0778 NfnB, Nitroreductase Energy production and conversion 167626318 Common - transcriptional regulator, LysR family Fphi_0096 168 COG0583 LysR, Transcriptional regulator Transcription 167626664 Pathogen - hypothetical protein Fphi_0445 4 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 167628091 Common - acid phosphatase/phosphotransferase Fphi_1864 14 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 167627815 Common - proton-dependent oligopeptide transporter (POT) family protein, di-or tripeptide:H+ symporter Fphi_1590 75 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 167627524 Common - oxidoreductase, 2OG-Fe(II) oxygenase family Fphi_1297 30 COG3751 EGL-9, Predicted proline hydroxylase Posttranslational modification, protein turnover, chaperones 167627252 Common - peptide/opine/nickel uptake transporter (PepT) family protein Fphi_1029 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 167627982 Common - mutator protein Fphi_1755 132 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 167626623 Common - chromosome partition protein B Fphi_0404 183 COG1475 Spo0J, Predicted transcriptional regulators Transcription 167626731 Common - Chitinase Fphi_0512 19 COG3979 COG3979, Uncharacterized protein contain chitin-binding domain type 3 General function prediction only 167627966 Common - transposase X Fphi_1740 54 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 167627929 Common - DNA primase Fphi_1703 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 167627454 Common - hypothetical protein Fphi_1228 14 COG1462 CsgG, Uncharacterized protein involved in formation of curli polymers Cell envelope biogenesis, outer membrane 167628128 Common - Aldose 1-epimerase Fphi_1903 86 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 167627516 Common - acetyltransferase Fphi_1290 85 COG3153 COG3153, Predicted acetyltransferase General function prediction only 167627968 Common - hypothetical protein Fphi_1742 17 None None None 167626806 Common - 50S ribosomal protein L3 Fphi_0586 224 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 167626427 Common - hypothetical protein Fphi_0208 9 COG3469 COG3469, Chitinase Carbohydrate transport and metabolism 167627291 Common - DNA topoisomerase (ATP-hydrolyzing) Fphi_1067 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 167626787 Common - 50S ribosomal protein L15 Fphi_0568 217 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 167626512 Common - UDP-N-acetylmuramoylalanine--D-glutamate ligase Fphi_0295 211 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 167627733 Common - integrase, catalytic region Fphi_1506 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167628042 Common - methionyl-tRNA formyltransferase Fphi_1814 218 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 167626973 Common - hypothetical protein Fphi_0751 18 COG2179 COG2179, Predicted hydrolase of the HAD superfamily General function prediction only 167626374 Common - purine-nucleoside phosphorylase Fphi_0152 67 COG0813 DeoD, Purine-nucleoside phosphorylase Nucleotide transport and metabolism 167626885 Common - zinc-binding protein Fphi_0664 214 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 167626663 Common - heavy metal cation transport ATPase Fphi_0444 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 167628098 Common - DNA replication and repair protein RecF Fphi_1871 151 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 167627061 Common - Anthranilate phosphoribosyltransferase Fphi_0837 217 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 167627286 Common - dGTP pyrophosphohydrolase Fphi_1062 112 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 167627755 Common - integrase, catalytic region Fphi_1527 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627703 Pathogen - hypothetical protein Fphi_1477 1 None None None 167627860 Common - dehydrogenase Fphi_1635 30 COG1748 LYS9, Saccharopine dehydrogenase and related proteins Amino acid transport and metabolism 167627580 Pathogen - hypothetical protein Fphi_1354 1 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 167627164 Common - NADH dehydrogenase (quinone) Fphi_0940 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 167627699 Common - putative teichoic acid biosynthesis protein F Fphi_1473 27 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 167627045 Pathogen - hypothetical protein Fphi_0822 1 None None None 167627197 Common - Oxoglutarate dehydrogenase (succinyl-transferring) Fphi_0973 147 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 167627789 Common - ferric iron binding protein, ferritin-like protein Fphi_1562 86 COG1528 Ftn, Ferritin-like protein Inorganic ion transport and metabolism 167626832 Pathogen - hypothetical protein Fphi_0612 1 None None None 167628076 Common - L-aspartate oxidase Fphi_1847 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 167627635 Common - drug:H+ antiporter-1 (DHA2) family Fphi_1409 211 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626689 Common - group A colicin translocation; TolR protein Fphi_0470 140 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 167626582 Common - acetyltransferase Fphi_0364 35 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 167626388 Common - N6-adenine-specific methylase Fphi_0166 210 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 167627546 Common - methyltransferase type 11 Fphi_1320 88 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 167627505 Common - hypothetical protein Fphi_1279 33 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 167626292 Common - hypothetical protein Fphi_0071 15 COG1434 COG1434, Uncharacterized conserved protein Function unknown 167627997 Common - hypothetical protein Fphi_1930 2 None None None 167627423 Common - outer membrane protein OmpH Fphi_1197 12 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 167627052 Common - ribokinase, PfkB family Fphi_0829 222 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 167628021 Common - AMP-binding enzyme Fphi_1793 199 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 167626358 Common - HAD-superfamily hydrolase Fphi_0135 17 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 167626587 Common - Phosphatidylserine decarboxylase Fphi_0370 95 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 167627671 Common - Acid phosphatase Fphi_1445 27 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 167627678 Pathogen - hypothetical protein Fphi_1452 1 None None None 167627125 Common - outer membrane efflux protein, TolC precursor Fphi_0901 108 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 167626921 Common - succinate semialdehyde dehydrogenase (NAD(P)+ dependent) Fphi_0699 222 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 167627120 Common - drug:H+ antiporter-1 (DHA1) family protein Fphi_0896 195 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626757 Common - hypothetical protein Fphi_0538 180 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 167626471 Common - asparaginase Fphi_0254 80 COG1446 COG1446, Asparaginase Amino acid transport and metabolism 167626608 Common - UDP-N-acetylmuramate dehydrogenase Fphi_0389 203 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 167627535 Common - hypothetical protein Fphi_1309 117 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 167627432 Common - 3-deoxy-D-manno-octulosonic-acid transferase Fphi_1206 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 167626263 Pathogen - hypothetical protein Fphi_0042 1 None None None 167626338 Common - recombination protein RecR Fphi_0116 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 167626390 Common - tRNA-(ms(2)io(6)a)-hydroxylase Fphi_0168 40 COG4445 MiaE, Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 167626268 Common - hypothetical protein Fphi_0046 4 None None None 167626399 Pathogen - hypothetical protein Fphi_0177 1 None None None 167627879 Pathogen - hypothetical protein Fphi_1653 1 COG1468 COG1468, RecB family exonuclease DNA replication, recombination, and repair 167627978 Common - rare lipoprotein B family protein Fphi_1751 3 COG2980 RlpB, Rare lipoprotein B Cell envelope biogenesis, outer membrane 167626347 Common - cysteine desulfurase, SufS subfamily Fphi_0125 237 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 167627413 Common - pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase Fphi_1187 245 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 167626604 Common - histidine triad (HIT) family protein Fphi_0385 236 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 167626659 Pathogen - hypothetical protein Fphi_0441 1 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 167626954 Common - hydroxy/aromatic amino acid permease (HAAAP) family protein Fphi_0733 33 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 167627746 Common - L-asparaginase Fphi_1520 135 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 167627251 Common - peptide/opine/nickel uptake transporter (PepT) family protein Fphi_1026 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 167627916 Common - 16S rRNA pseudouridine synthase Fphi_1690 205 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 167627019 Pathogen - hypothetical protein Fphi_0796 1 None None None 167627579 Common - 50S ribosomal protein L32 Fphi_1353 52 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 167627576 Common - malonyl-CoA:ACP transacylase Fphi_1350 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 167626282 Common - integrase, catalytic region Fphi_0061 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627110 Common - potassium-transporting ATPase B chain Fphi_0886 232 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism 167627519 Common - putative transcriptional regulator, ArsR family Fphi_1293 100 COG0640 ArsR, Predicted transcriptional regulators Transcription 167627049 Common - sulfide-quinone reductase Fphi_0826 77 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 167628124 Pathogen - hypothetical protein Fphi_1899 1 None None None 167626815 Common - ribosome recycling factor Fphi_0595 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 167627709 Common - S51 family peptidase Fphi_1483 32 COG4242 CphB, Cyanophycinase and related exopeptidases Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism 167626270 Common - oxidoreductase, short chain dehydrogenase/reductase family Fphi_0049 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 167627592 Pathogen - intracellular growth locus, subunit C Fphi_1366 1 None None None 167626468 Common - hypothetical protein Fphi_0251 63 COG0628 PerM, Predicted permease General function prediction only 167627497 Common - transcription termination factor Rho Fphi_1271 211 COG1158 Rho, Transcription termination factor Transcription 167627173 Common - ribosome-binding factor A Fphi_0949 161 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 167626799 Common - 50S ribosomal protein L16 Fphi_0579 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 167627140 Common - Glu-tRNAGln amidotransferase B subunit Fphi_0916 213 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 167627467 Common - Isocitrate dehydrogenase (NADP(+)) Fphi_1241 65 COG2838 Icd, Monomeric isocitrate dehydrogenase Energy production and conversion 167627446 Common - NAD/FAD-binding protein Fphi_1220 67 COG2907 COG2907, Predicted NAD/FAD-binding protein General function prediction only 167627407 Pathogen - hypothetical protein Fphi_1181 1 None None None 167626303 Pathogen - hypothetical protein Fphi_0082 1 COG1471 RPS4A, Ribosomal protein S4E Translation, ribosomal structure and biogenesis 167627247 Common - signal recognition particle-docking protein FtsY Fphi_1022 246 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 167626792 Common - ribosomal protein S8 Fphi_0573 226 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 167627365 Common - monovalent cation:proton antiporter-1 Fphi_1140 144 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 167627664 Common - DedA family protein Fphi_1438 156 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 167626499 Common - Asparaginase Fphi_0282 143 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 167627300 Pathogen - membrane protein of unknown function Fphi_1076 3 None None None 167627118 Common - ATP-binding cassette (ABC) superfamily protein Fphi_0895 243 COG4178 COG4178, ABC-type uncharacterized transport system, permease and ATPase components General function prediction only 167626297 Common - Hippurate hydrolase Fphi_0076 170 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 167627619 Common - integrase, catalytic region Fphi_1392 62 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626696 Common - OmpA family protein Fphi_0477 85 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 167626766 Common - Dihydrofolate synthase Fphi_0547 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 167626340 Common - type IV pili polytopic inner membrane protein Fphi_0118 144 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 167626236 Common - aspartate aminotransferase Fphi_0015 238 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 167626532 Pathogen - hypothetical protein Fphi_0315 1 None None None 167627077 Pathogen - B-type cytochrome Fphi_0853 2 COG3038 CybB, Cytochrome B561 Energy production and conversion 167627156 Common - NADH dehydrogenase (ubiquinone) Fphi_0932 191 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 167627913 Common - replicative DNA helicase Fphi_1687 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 167626686 Pathogen - hypothetical protein Fphi_0467 1 None None None 167626409 Common - type I restriction-modification system methyltransferase subunit like protein Fphi_0190 161 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 167626733 Common - drug:H+ antiporter-1 (DHA1) family protein Fphi_0514 211 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626369 Common - DNA-3-methyladenine glycosylase I Fphi_0147 132 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 167627726 Common - hydroxy/aromatic amino acid permease (HAAAP) family protein Fphi_1499 7 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 167627070 Common - integrase, catalytic region Fphi_0846 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627269 Common - DNA-directed RNA polymerase, beta subunit Fphi_1046 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 167626305 Common - metabolite:H+ symporter (MHS) family protein Fphi_0084 132 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626250 Common - hypothetical protein Fphi_0029 15 None None None 167627656 Common - tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Fphi_1430 209 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 167626595 Common - sugar transporter, MFS superfamily Fphi_0377 192 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 167627332 Common - Glutamate dehydrogenase (NADP(+)) Fphi_1107 166 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 167627088 Common - chitinase Fphi_0864 6 None None None 167626472 Common - hypothetical protein Fphi_0255 13 None None None 167626520 Common - drug:H+ antiporter-1 (DHA1) family protein Fphi_0303 168 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167628067 Pathogen - hypothetical protein Fphi_1838 1 None None None 167627232 Common - RND efflux transporter, AcrB/AcrD/AcrF family Fphi_1007 182 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 167628059 Common - putative antirestriction protein Fphi_1831 20 COG4734 ArdA, Antirestriction protein General function prediction only 167626892 Common - competence-related protein Fphi_0671 122 COG0658 ComEC, Predicted membrane metal-binding protein General function prediction only 167626436 Common - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fphi_0219 191 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 167627603 Pathogen - hypothetical protein Fphi_1377 1 None None None 167627492 Common - glycosyltransferase family 2 Fphi_1266 169 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 167627784 Common - iron-sulfur cluster-binding protein Fphi_1557 115 COG2878 COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB Energy production and conversion 167627684 Pathogen - hypothetical protein Fphi_1458 1 None None None 167627102 Common - dihydrodipicolinate reductase Fphi_0878 183 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 167627490 Common - Glycosyltransferase involved in cell wall biogenesis-like protein Fphi_1264 128 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 167626965 Common - sulfatase Fphi_0743 61 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 167626279 Common - integrase, catalytic region Fphi_0058 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626988 Pathogen - hypothetical protein Fphi_0766 1 None None None 167626714 Common - septum formation inhibitor-activating ATPase Fphi_0495 147 COG2894 MinD, Septum formation inhibitor-activating ATPase Cell division and chromosome partitioning 167626653 Pathogen - hypothetical protein Fphi_0434 1 None None None 167628060 Pathogen - hypothetical protein Fphi_1832 2 None None None 167627399 Common - hypothetical protein Fphi_1174 2 None None None 167626721 Common - BolA family protein Fphi_0502 19 COG5007 COG5007, Predicted transcriptional regulator, BolA superfamily Transcription 167627979 Common - leucyl-tRNA synthetase Fphi_1752 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 167626825 Pathogen - hypothetical protein Fphi_0605 1 None None None 167627092 Common - tryptophan synthase beta chain Fphi_0868 224 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 167626654 Pathogen - hypothetical protein Fphi_0435 1 None None None 167627834 Common - hypothetical protein Fphi_1609 28 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 167626314 Common - membrane protein of unknown function Fphi_0092 4 None None None 167626242 Common - Thymidine kinase Fphi_0021 78 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 167626728 Common - amino acid transporter Fphi_0509 76 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 167626485 Common - single-stranded-DNA-specific exonuclease Fphi_0268 193 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 167627392 Common - N-acylneuraminate-9-phosphate synthase Fphi_1167 78 COG2089 SpsE, Sialic acid synthase Cell envelope biogenesis, outer membrane 167626641 Common - type IV pili fiber building block protein Fphi_0422 16 COG4969 PilA, Tfp pilus assembly protein, major pilin PilA Cell motility and secretion / Intracellular trafficking and secretion 167627472 Common - Mannose-1-phosphate guanylyltransferase (GDP) Fphi_1246 164 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 167627184 Common - H(+)-transporting two-sector ATPase Fphi_0960 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 167626527 Common - Arabinose efflux permease-like protein Fphi_0310 9 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626507 Common - hypothetical protein Fphi_0290 72 COG2924 COG2924, Uncharacterized protein conserved in bacteria Function unknown 167627950 Common - hypothetical protein Fphi_1724 8 None None None 167627895 Pathogen - hypothetical protein Fphi_1669 1 None None None 167626230 Common - type IV pili associated protein Fphi_0009 2 None None None 167627470 Common - galactosyl transferase Fphi_1244 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 167627651 Common - hypothetical protein Fphi_1425 59 COG3028 COG3028, Uncharacterized protein conserved in bacteria Function unknown 167627254 Pathogen - hypothetical protein Fphi_1031 1 None None None 167627550 Common - putative glutamate synthase Fphi_1324 202 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 167626699 Common - aspartate:alanine exchanger (AAE) family protein Fphi_0480 57 COG2985 COG2985, Predicted permease General function prediction only 167626542 Common - Starch synthase Fphi_0325 129 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 167627943 Common - GMP synthase (glutamine-hydrolyzing) Fphi_1717 240 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 167626904 Common - hypothetical protein Fphi_0682 11 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 167628095 Common - hypothetical protein Fphi_1867 42 COG3651 COG3651, Uncharacterized protein conserved in bacteria Function unknown 167626816 Common - uridylate kinase Fphi_0596 242 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 167627932 Common - lipoyltransferase Fphi_1706 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 167626510 Common - hypothetical protein Fphi_0293 63 COG3394 COG3394, Uncharacterized protein conserved in bacteria Function unknown 167627335 Common - glutamate:GabA antiporter (APC family) protein Fphi_1110 68 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 167627836 Pathogen - hypothetical protein Fphi_1611 1 None None None 167626803 Common - 50S ribosomal protein L2 Fphi_0583 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 167627276 Common - 16S rRNA processing protein RimM Fphi_1053 130 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 167626602 Common - hypothetical protein Fphi_0383 12 COG3165 COG3165, Uncharacterized protein conserved in bacteria Function unknown 167626856 Common - primosomal protein N' Fphi_0636 212 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 167627213 Common - integrase, catalytic region Fphi_0987 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627939 Common - ABC transporter, ATP-binding protein Fphi_1713 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 167626617 Pathogen - hypothetical protein Fphi_0397 1 None None None 167627405 Common - putative spore protein Fphi_1179 6 COG4641 COG4641, Uncharacterized protein conserved in bacteria Function unknown 167628108 Common - integrase, catalytic region Fphi_1881 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627673 Common - S-adenosylmethionine:tRNA ribosyltransferase-isomerase Fphi_1447 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 167627566 Common - acetyltransferase Fphi_1341 5 COG0456 RimI, Acetyltransferases General function prediction only 167627222 Common - NAD/FAD-dependent oxidoreductase Fphi_0997 38 COG3380 COG3380, Predicted NAD/FAD-dependent oxidoreductase General function prediction only 167626993 Common - 3-isopropylmalate dehydratase Fphi_0771 211 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 167626666 Common - LemA-like protein Fphi_0447 128 COG1704 LemA, Uncharacterized conserved protein Function unknown 167626873 Common - Glutaminase Fphi_0653 86 COG2066 GlsA, Glutaminase Amino acid transport and metabolism 167627514 Common - tRNA (guanine-N(7)-)-methyltransferase Fphi_1288 177 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 167626364 Common - ATP-binding cassette putrescine uptake system, membrane protein, subunit H Fphi_0142 200 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 167626376 Common - major facilitator superfamily transporter Fphi_0154 195 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167627038 Common - hydrogenase expression/formation protein HypE Fphi_0815 129 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 167627123 Pathogen - hypothetical protein Fphi_0899 1 None None None 167626773 Common - arginine repressor Fphi_0555 80 COG1438 ArgR, Arginine repressor Transcription 167627029 Common - carbamoyl-phosphate synthase large chain Fphi_0806 235 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 167627625 Common - 50S ribosomal protein L13 Fphi_1399 229 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 167627477 Common - dTDP-4-dehydrorhamnose 3,5-epimerase Fphi_1251 168 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 167627873 Common - enzyme of enolase superfamily Fphi_1647 136 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 167626746 Common - fructose 1,6-bisphosphatase II Fphi_0527 112 COG1494 GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins Carbohydrate transport and metabolism 167626245 Common - PhoH family protein, putative ATPase Fphi_0024 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 167627843 Common - glutaredoxin 1 Fphi_1618 66 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 167626610 Common - GTP-binding protein Fphi_0391 221 COG1160 COG1160, Predicted GTPases General function prediction only 167626554 Common - hypothetical protein Fphi_0336 12 None None None 167627531 Common - aspartate/tyrosine/aromatic aminotransferase Fphi_1305 241 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 167627773 Common - hypothetical protein Fphi_1546 218 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 167627390 Common - acetyl transferase Fphi_1165 62 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 167626830 Common - putative MutT/NUDIX hydrolase Fphi_0610 15 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 167627883 Common - hypothetical protein Fphi_1657 26 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 167626431 Common - uracil phosphoribosyltransferase Fphi_0214 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 167626847 Common - hypothetical protein Fphi_0627 90 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 167627104 Common - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase Fphi_0880 138 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 167626997 Common - major facilitator superfamily (MFS) transporter family protein Fphi_0776 16 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 167627131 Pathogen - hypothetical protein Fphi_0907 1 None None None 167628032 Common - ROK family protein Fphi_1804 141 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 167627782 Common - hypothetical protein Fphi_1555 23 None None None 167627658 Common - Thymidylate synthase Fphi_1432 139 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 167627557 Common - ATP-dependent exoDNAse (exonuclease V) beta subunit Fphi_1331 213 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 167626861 Common - major facilitator superfamily (MFS) transport protein Fphi_0641 59 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 167627715 Common - GTP diphosphokinase Fphi_1489 207 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 167626941 Common - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Fphi_0719 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 167628044 Pathogen - hypothetical protein Fphi_1816 1 None None None 167626328 Common - hypothetical protein Fphi_0106 6 COG0398 COG0398, Uncharacterized conserved protein Function unknown 167626415 Common - integrase, catalytic region Fphi_0196 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626883 Common - cell division protein FtsQ Fphi_0662 43 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 167627589 Pathogen - hypothetical protein Fphi_1363 3 None None None 167628018 Common - major facilitator superfamily (MFS) transport protein Fphi_1790 39 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167627382 Common - UDP-3-O-acyl-N-acetylglucosamine deacetylase Fphi_1157 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 167626285 Common - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamideisomerase Fphi_0064 215 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 167626839 Pathogen - hypothetical protein Fphi_0619 1 None None None 167627637 Common - long chain fatty acid CoA ligase Fphi_1411 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 167626673 Common - hypothetical protein Fphi_0454 19 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 167626923 Common - propionate kinase 2 / acetate kinase A Fphi_0701 162 COG0282 ackA, Acetate kinase Energy production and conversion 167627389 Common - DegT/DnrJ/EryC1/StrS aminotransferase Fphi_1164 191 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 167626569 Pathogen - hypothetical protein Fphi_0351 1 None None None 167627195 Common - Succinate dehydrogenase Fphi_0971 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 167627995 Common - translation initiation factor IF-1 Fphi_1768 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 167627166 Common - NADH dehydrogenase (quinone) Fphi_0942 210 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 167626562 Common - peptide deformylase Fphi_0344 202 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 167627757 Pathogen - hypothetical protein Fphi_1529 1 None None None 167627705 Common - Glycosyltransferase-like protein Fphi_1479 189 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 167627787 Common - integrase, catalytic region Fphi_1560 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627862 Common - hypothetical protein Fphi_1637 17 None None None 167627750 Common - integrase, catalytic region Fphi_1523 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627039 Common - cytochrome c3 hydrogenase alpha (or beta) chain Fphi_0816 31 COG1150 HdrC, Heterodisulfide reductase, subunit C Energy production and conversion 167627884 Common - radical SAM family protein Fphi_1658 168 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 167626789 Common - 30S ribosomal protein S5 Fphi_0570 216 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 167627071 Pathogen - hypothetical protein Fphi_0847 1 None None None 167627735 Common - isochorismatase hydrolase family protein Fphi_1509 98 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 167627908 Common - hypothetical protein Fphi_1682 44 COG2996 COG2996, Uncharacterized protein conserved in bacteria Function unknown 167627640 Common - conserved membrane protein of unknown function Fphi_1415 10 COG2733 COG2733, Predicted membrane protein Function unknown 167627206 Common - hypothetical protein Fphi_0981 16 COG4643 COG4643, Uncharacterized protein conserved in bacteria Function unknown 167626972 Common - hypothetical protein Fphi_0750 27 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 167626828 Common - Glutamate-5-semialdehyde dehydrogenase Fphi_0608 197 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 167626228 Common - type IV pili lipoprotein Fphi_0007 3 COG3168 PilP, Tfp pilus assembly protein PilP Cell motility and secretion / Intracellular trafficking and secretion 167626517 Common - (putative) drug resistance ATPase-1 (drug RA1) family protein Fphi_0300 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 167626578 Common - methionine aminopeptidase Fphi_0360 249 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 167627820 Common - tyrosyl-tRNA synthetase Fphi_1595 241 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 167627693 Common - Ribulose-phosphate 3-epimerase Fphi_1467 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 167626557 Common - glycine cleavage system H protein (lipoate-binding) Fphi_0339 186 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 167628112 Common - restriction endonuclease Fphi_1885 45 COG3587 COG3587, Restriction endonuclease Defense mechanisms 167627285 Common - non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related Fphi_1061 180 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 167628096 Common - Glycine--tRNA ligase Fphi_1869 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 167627577 Common - Beta-ketoacyl-acyl-carrier-protein synthase I Fphi_1351 225 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 167626316 Common - Exodeoxyribonuclease I Fphi_0094 53 COG2925 SbcB, Exonuclease I DNA replication, recombination, and repair 167627690 Pathogen - hypothetical protein Fphi_1464 2 COG3219 COG3219, Uncharacterized protein conserved in bacteria Function unknown 167627953 Common - Alkaline phosphatase Fphi_1727 81 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 167626634 Common - Phosphoribosylaminoimidazole carboxylase Fphi_0414 194 COG0026 PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) Nucleotide transport and metabolism 167628126 Common - Deoxyribodipyrimidine photo-lyase Fphi_1901 139 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 167627720 Common - cyanophycin synthetase Fphi_1494 201 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 167626930 Common - serine peptidase, S49 family Fphi_0708 174 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 167627792 Common - hypothetical protein Fphi_1565 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 167627452 Common - hypothetical protein Fphi_1226 27 COG3417 FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) General function prediction only 167627350 Common - GTP diphosphokinase Fphi_1125 205 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 167626597 Common - SUA5/YciO/YrdC family protein Fphi_0379 111 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 167627855 Pathogen - hypothetical protein Fphi_1630 1 None None None 167627058 Common - Indole-3-glycerol-phosphate synthase, Phosphoribosylanthranilate isomerase Fphi_0834 220 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 167627147 Common - L-lysine 6-monooxygenase (NADPH) Fphi_0923 52 COG3486 IucD, Lysine/ornithine N-monooxygenase Secondary metabolites biosynthesis, transport, and catabolism 167627526 Common - hypothetical protein Fphi_1300 2 None None None 167626956 Common - nitroreductase Fphi_0734 79 COG0778 NfnB, Nitroreductase Energy production and conversion 167628052 Common - hypothetical protein Fphi_1824 50 COG1002 COG1002, Type II restriction enzyme, methylase subunits Defense mechanisms 167626656 Common - hypothetical protein Fphi_0437 116 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 167627893 Common - drug:H+ antiporter-1 (DHA1) family protein Fphi_1667 191 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167627001 Pathogen - hypothetical protein Fphi_0778 1 None None None 167626668 Pathogen - type IV pili, pilus assembly protein Fphi_0449 3 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 167626422 Common - peroxidase/catalase Fphi_0203 98 COG0376 KatG, Catalase (peroxidase I) Inorganic ion transport and metabolism 167626801 Common - 50S ribosomal protein L22 Fphi_0581 217 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 167627175 Common - major facilitator superfamily (MFS) transport protein Fphi_0951 75 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 167627485 Common - hypothetical protein Fphi_1259 10 None None None 167627469 Common - dTDP-glucose 4,6-dehydratase Fphi_1243 169 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 167626506 Common - dissimilatory sulfite reductase subunit gamma Fphi_0289 59 COG2920 DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit Inorganic ion transport and metabolism 167626403 Common - integrase, catalytic region Fphi_0182 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627306 Common - glycosyltransferase Fphi_1082 132 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 167626244 Common - 2-alkenal reductase Fphi_0023 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 167627127 Common - glutamate decarboxylase Fphi_0903 68 COG0076 GadB, Glutamate decarboxylase and related PLP-dependent proteins Amino acid transport and metabolism 167626715 Common - cell division topological specificity factor protein Fphi_0496 59 COG0851 MinE, Septum formation topological specificity factor Cell division and chromosome partitioning 167627151 Common - Aspartate kinase Fphi_0927 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 167626694 Common - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Fphi_0475 185 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 167626413 Common - sulfate permease family protein Fphi_0194 161 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 167628088 Common - 3-deoxy-D-manno-octulosonate cytidyltransferase Fphi_1861 148 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 167626646 Common - Zn-dependent alcohol dehydrogenase Fphi_0427 197 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 167627228 Pathogen - hypothetical protein Fphi_1003 1 None None None 167627256 Common - glycerol kinase Fphi_1033 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 167628119 Common - putative antirestriction protein Fphi_1894 20 COG4734 ArdA, Antirestriction protein General function prediction only 167626680 Common - deoxyribodipyrimidine photolyase-related protein Fphi_0461 59 COG3046 COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase General function prediction only 167627420 Common - DNA topoisomerase (ATP-hydrolyzing) Fphi_1194 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 167627959 Common - zinc (Zn2+)-iron (Fe2+) permease (ZIP) family protein Fphi_1733 6 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 167628000 Common - Bor lipoprotein Fphi_1772 6 None None None 167628082 Common - 2-alkenal reductase Fphi_1855 169 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626255 Common - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Fphi_0034 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 167626526 Common - Beta-galactosidase Fphi_0309 39 COG1874 LacA, Beta-galactosidase Carbohydrate transport and metabolism 167627781 Pathogen - hypothetical protein Fphi_1554 1 None None None 167627060 Common - peptide methionine sulfoxide reductase Fphi_0836 204 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 167627220 Common - aconitate hydratase Fphi_0995 222 COG1048 AcnA, Aconitase A Energy production and conversion 167627239 Common - regulatory factor, Bvg accessory factor family Fphi_1014 119 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 167627072 Common - hydrogenase accessory protein HypB Fphi_0848 137 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 167627851 Common - haloacid dehalogenase-like hydrolase Fphi_1626 108 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 167628078 Common - Methylated-DNA--(protein)-cysteine S-methyltransferase Fphi_1849 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 167627751 Pathogen - hypothetical protein Fphi_1524 1 None None None 167627502 Common - DNA-directed RNA polymerase, alpha subunit/40 kD subunit Fphi_1276 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 167627491 Common - Glycosyltransferase involved in cell wall biogenesis-like protein Fphi_1265 108 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 167627283 Common - LicB-like transmembrane protein Fphi_1058 11 COG2510 COG2510, Predicted membrane protein Function unknown 167627411 Common - Pyruvate dehydrogenase (acetyl-transferring) Fphi_1185 135 COG2609 AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component Energy production and conversion 167628005 Common - hypothetical protein Fphi_1777 32 None None None 167627311 Common - putative acyl carrier protein Fphi_1087 49 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 167628081 Common - parvulin-like peptidyl-prolyl isomerase domain Fphi_1852 142 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 167627081 Common - Na+:H+ antiporter Fphi_0857 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 167627460 Common - sugar porter (SP) family protein Fphi_1235 186 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626985 Pathogen - type IV pili, pilus assembly protein Fphi_0763 1 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 167627090 Common - nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein Fphi_0867 49 COG3201 PnuC, Nicotinamide mononucleotide transporter Coenzyme metabolism 167626679 Common - hypothetical protein Fphi_0460 38 COG4338 COG4338, Uncharacterized protein conserved in bacteria Function unknown 167627748 Common - type I restriction-modification system, subunit R (restriction) Fphi_1522 144 COG4096 HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 167626478 Common - DNA mismatch repair enzyme with ATPase activity Fphi_0261 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 167626922 Common - Phosphate acetyltransferase Fphi_0700 166 COG0280 Pta, Phosphotransacetylase Energy production and conversion 167627587 Common - Fucose permease-like protein Fphi_1361 19 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 167628131 Common - amino acid-polyamine-organocation (APC) superfamily Fphi_1906 34 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 167626700 Common - L-aspartate-beta-decarboxylase Fphi_0481 185 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 167627336 Common - Methylated-DNA--(protein)-cysteine S-methyltransferase Fphi_1111 194 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 167627313 Common - hypothetical protein Fphi_1089 34 None None None 167627367 Common - Tryptophan--tRNA ligase Fphi_1142 246 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 167627378 Common - short-chain dehydrogenase/reductase SDR Fphi_1153 235 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 167627623 Common - macrophage growth locus, protein A Fphi_1397 62 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 167627765 Common - host factor I for bacteriophage Q beta replication Fphi_1538 127 COG1923 Hfq, Uncharacterized host factor I protein General function prediction only 167626786 Common - preprotein translocase, subunit Y, membrane protein Fphi_0567 230 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 167627299 Common - hypothetical protein Fphi_1075 85 COG3022 COG3022, Uncharacterized protein conserved in bacteria Function unknown 167626459 Common - hypothetical protein Fphi_0242 11 None None None 167627528 Common - transcription termination factor Fphi_1303 110 COG0781 NusB, Transcription termination factor Transcription 167627648 Common - FAD binding family protein Fphi_1422 31 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 167626624 Common - chromosome partition protein A, ATPase Fphi_0405 188 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 167627328 Pathogen - hypothetical protein Fphi_1103 1 None None None 167627249 Common - 4-phytase Fphi_1024 207 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 167627263 Pathogen - preprotein translocase, subunit E, membrane protein Fphi_1040 1 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 167627158 Common - NADH dehydrogenase (quinone) Fphi_0934 166 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 167626384 Common - conserved membrane protein of unknown function Fphi_0162 53 COG0795 COG0795, Predicted permeases General function prediction only 167628017 Common - aldo/keto reductase family protein Fphi_1789 193 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 167626286 Common - imidazole glycerol phosphate synthase subunit HisH Fphi_0065 215 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 167626881 Common - cell division protein FtsZ Fphi_0660 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 167627768 Common - oxidoreductase Fphi_1541 55 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 167626370 Common - hypothetical protein Fphi_0148 12 COG2128 COG2128, Uncharacterized conserved protein Function unknown 167626341 Common - integrase, catalytic region Fphi_0119 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627109 Common - Potassium-transporting ATPase Fphi_0885 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 167627167 Common - hypothetical protein Fphi_0943 19 COG2960 COG2960, Uncharacterized protein conserved in bacteria Function unknown 167627972 Common - arsenate reductase Fphi_1746 97 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 167627394 Common - nucleotidyl transferase Fphi_1169 234 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 167627203 Common - integrase, catalytic region Fphi_0979 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626265 Common - hypothetical protein Fphi_0044 20 COG2515 Acd, 1-aminocyclopropane-1-carboxylate deaminase Amino acid transport and metabolism 167628107 Common - Co/Zn/Cd cation transporter Fphi_1880 213 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 167627371 Common - Polyketide synthase modules Fphi_1146 214 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 167626768 Common - Nucleoside-diphosphate kinase Fphi_0549 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 167627011 Common - integrase, catalytic region Fphi_0789 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626336 Common - Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Fphi_0114 207 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 167627354 Common - hypothetical protein Fphi_1129 53 None None None 167626307 Common - UBA/ThiF-type NAD/FAD binding fold Fphi_0086 222 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 167628036 Common - glycosyl hydrolase family 3 Fphi_1808 173 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 167626615 Common - isoleucyl-tRNA synthetase Fphi_0396 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 167627918 Common - ribosomal-protein-alanine acetyltransferase Fphi_1692 100 COG0456 RimI, Acetyltransferases General function prediction only 167626300 Common - hypothetical protein Fphi_0079 82 COG2307 COG2307, Uncharacterized protein conserved in bacteria Function unknown 167626494 Common - dimethyladenosine transferase Fphi_0277 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 167626323 Pathogen - hypothetical protein Fphi_0101 1 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 167626725 Common - amino acid-polyamine-organocation family protein Fphi_0506 172 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 167626948 Common - hypothetical protein Fphi_0726 11 None None None 167627669 Common - 2-octaprenyl-6-methoxyphenyl hydroxylase Fphi_1443 118 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 167626272 Common - VacJ like lipoprotein Fphi_0051 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 167627429 Common - hypothetical protein Fphi_1203 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 167627343 Pathogen - hypothetical protein Fphi_1118 1 None None None 167627736 Common - Fucose permease-like protein Fphi_1510 28 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 167627200 Common - phosphoglucosamine mutase Fphi_0976 242 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 167626709 Common - ATP-dependent DNA helicase Fphi_0490 225 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 167626239 Common - N-acetylglucosamine-6-phosphate deacetylase Fphi_0018 119 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 167627340 Common - hypothetical protein Fphi_1115 4 None None None 167626875 Pathogen - hypothetical protein Fphi_1926 1 None None None 167627198 Common - 2-oxoglutarate dehydrogenase complex, E2 component, dihydrolipoyltranssuccinase Fphi_0974 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 167626397 Common - multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) transporter Fphi_0175 19 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 167626549 Common - Homoserine O-succinyltransferase Fphi_0332 64 COG1897 MetA, Homoserine trans-succinylase Amino acid transport and metabolism 167626931 Common - integrase, catalytic region Fphi_0709 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626758 Pathogen - hypothetical protein Fphi_0539 1 None None None 167627471 Common - UDP-glucose 4-epimerase Fphi_1245 109 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 167627695 Common - UDP-glucose 4-epimerase Fphi_1469 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 167626515 Common - glutaminyl-tRNA synthetase Fphi_0298 248 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 167627606 Common - choloylglycine hydrolase family protein Fphi_1380 54 COG3049 COG3049, Penicillin V acylase and related amidases Cell envelope biogenesis, outer membrane 167627986 Common - thioredoxin Fphi_1759 233 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 167627187 Common - ATP synthase, F1 sector, subunit epsilon Fphi_0963 134 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 167627962 Common - cardiolipin synthase Fphi_1736 152 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 167627458 Common - Nicotinamide phosphoribosyltransferase Fphi_1232 23 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 167627790 Common - lipoic acid synthetase Fphi_1563 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 167627536 Common - prolyl-tRNA synthetase Fphi_1310 235 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 167626359 Common - Lignostilbene-alpha beta-dioxygenase-like protein Fphi_0137 28 COG3670 COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 167627633 Common - outer membrane efflux protein Fphi_1407 107 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 167627712 Common - putative capsule biosynthesis protein Fphi_1486 12 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 167626943 Common - ribosomal protein S20 Fphi_0721 205 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 167627613 Common - Ribonuclease H Fphi_1387 239 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 167626483 Common - amino acid-polyamine-organocation (APC) superfamily protein Fphi_0266 93 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 167627321 Pathogen - hypothetical protein Fphi_1928 1 COG1918 FeoA, Fe2+ transport system protein A Inorganic ion transport and metabolism 167627881 Common - hypothetical protein Fphi_1655 4 COG1343 COG1343, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 167627653 Common - Mannosyltransferase OCH1-like protein Fphi_1428 12 COG3774 OCH1, Mannosyltransferase OCH1 and related enzymes Cell envelope biogenesis, outer membrane 167627193 Common - succinate dehydrogenase, cytochrome b556 Fphi_0969 75 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 167627993 Common - amino acid antiporter Fphi_1766 72 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 167627830 Common - membrane fusion protein Fphi_1605 141 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 167626633 Common - hypothetical protein Fphi_0415 140 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 167627575 Common - beta-ketoacyl-ACP reductase Fphi_1349 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 167627036 Common - hydrogenase expression/formation protein (HUPF/HYPC) Fphi_0813 97 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 167627459 Common - hypothetical protein Fphi_1233 9 COG2841 COG2841, Uncharacterized protein conserved in bacteria Function unknown 167627839 Pathogen - DJ-1/PfpI family protein Fphi_1614 1 None None None 167626735 Common - Cysteine--tRNA ligase Fphi_0516 244 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 167628058 Common - hypothetical protein Fphi_1830 38 COG4679 COG4679, Phage-related protein Function unknown 167627066 Common - chromosomal replication initiator protein DnaA Fphi_0842 214 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 167626837 Common - valyl-tRNA synthetase Fphi_0617 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 167626706 Common - glyoxalase family protein Fphi_0487 19 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 167627643 Common - ATP-binding cassette (ABC) superfamily protein Fphi_1417 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 167627041 Common - hypothetical protein Fphi_0818 36 COG1941 FrhG, Coenzyme F420-reducing hydrogenase, gamma subunit Energy production and conversion 167627605 Common - putative cystathionine beta-synthase Fphi_1379 221 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 167628038 Common - putative transcriptional regulator Fphi_1810 96 COG1959 COG1959, Predicted transcriptional regulator Transcription 167627926 Common - Serine-type D-Ala-D-Ala carboxypeptidase Fphi_1700 107 COG2027 DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) Cell envelope biogenesis, outer membrane 167628070 Common - rhodanese sulfurtransferase Fphi_1841 109 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 167626408 Common - hypothetical protein Fphi_0188 35 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 167628031 Common - biotin-(acetyl-CoA-carboxylase) ligase Fphi_1802 215 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 167627112 Common - two component sensor protein KdpD Fphi_0888 222 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 167627160 Common - NADH dehydrogenase (quinone) Fphi_0936 186 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 167627559 Common - regulatory factor, Bvg accessory factor family Fphi_1333 126 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 167627864 Common - hypothetical protein Fphi_1639 23 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 167627051 Common - drug/metabolite transporter (DMT) superfamily protein Fphi_0828 5 COG4975 GlcU, Putative glucose uptake permease Carbohydrate transport and metabolism 167628072 Common - Phosphoserine transaminase Fphi_1843 113 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 167627812 Common - type IV pili leader peptidase and methylase Fphi_1587 135 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 167626418 Common - glycerophosphoryl diester phosphodiesterase Fphi_0199 133 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 167628011 Common - ATP-dependent RNA helicase Fphi_1783 236 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 167626253 Common - peptidase, M24 family Fphi_0032 185 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 167627033 Pathogen - hypothetical protein Fphi_0810 1 None None None 167627507 Common - hypothetical protein Fphi_1281 136 COG0730 COG0730, Predicted permeases General function prediction only 167627444 Common - Cyclopropane-fatty-acyl-phospholipid synthase Fphi_1218 124 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 167627958 Common - hypothetical protein Fphi_1732 125 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 167626555 Common - Glycine dehydrogenase (decarboxylating) Fphi_0337 173 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 167627106 Common - aspartate aminotransferase Fphi_0882 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 167626798 Common - 50S ribosomal protein L29 Fphi_1925 94 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 167627840 Common - hypothetical protein Fphi_1615 6 None None None 167627639 Common - hypothetical protein Fphi_1413 204 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 167626958 Common - cytochrome b561 family protein Fphi_0736 54 COG3038 CybB, Cytochrome B561 Energy production and conversion 167626970 Common - universal stress protein Fphi_0748 152 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 167627802 Common - major facilitator superfamily (MFS) transport protein Fphi_1577 161 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 167626821 Common - Serine O-acetyltransferase Fphi_0601 191 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 167626812 Common - dUTP diphosphatase Fphi_0592 173 COG0756 Dut, dUTPase Nucleotide transport and metabolism 167626467 Common - short-chain dehydrogenase/reductase SDR Fphi_0250 201 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 167627940 Common - fumarylacetoacetate hydrolase Fphi_1714 167 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 167627218 Common - GtrA-like protein Fphi_0993 13 COG2246 COG2246, Predicted membrane protein Function unknown 167626453 Common - S-adenosylmethionine-dependent methyltransferase Fphi_0236 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 167627024 Common - hydrolase, alpha/beta fold family Fphi_0801 77 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 167628051 Pathogen - hypothetical protein Fphi_1823 2 None None None 167626540 Common - Phosphorylase Fphi_0323 145 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 167626443 Common - RNA methyltransferase, TrmA family Fphi_0226 201 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 167627858 Common - D-alanyl-D-alanine carboxypeptidase Fphi_1633 53 COG1876 VanY, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 167626605 Common - purine/pyrimidine phosphoribosyl transferase family protein Fphi_0386 82 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 167626572 Common - soluble lytic murein transglycosylase Fphi_0354 160 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 167626845 Common - IMP dehydrogenase/GMP reductase:von Willebrand factor, type A Fphi_0625 81 COG1240 ChlD, Mg-chelatase subunit ChlD Coenzyme metabolism 167627552 Common - exodeoxyribonuclease V, gamma subunit Fphi_1326 65 COG1330 RecC, Exonuclease V gamma subunit DNA replication, recombination, and repair 167627568 Common - Inositol-phosphate phosphatase Fphi_1342 214 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 167626979 Common - 50S ribosomal protein L34 Fphi_0757 197 None None None 167627136 Common - putative ABC type bacteriocin/antibiotic exporter Fphi_0912 11 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 167626379 Pathogen - type IV pili, pilus assembly protein Fphi_0157 1 COG4970 FimT, Tfp pilus assembly protein FimT Cell motility and secretion / Intracellular trafficking and secretion 167628093 Common - ribonuclease D Fphi_1866 127 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 167627934 Common - Serine-type D-Ala-D-Ala carboxypeptidase Fphi_1708 155 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 167628121 Common - tRNA-dihydrouridine synthase Fphi_1896 207 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 167626897 Common - YggT family protein Fphi_0675 89 None None None 167626546 Common - pullulonase, type I Fphi_0329 144 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 167626747 Common - hypothetical protein Fphi_0528 75 COG2945 COG2945, Predicted hydrolase of the alpha/beta superfamily General function prediction only 167626859 Common - trp repressor binding protein Fphi_0639 110 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 167627500 Common - AAA family-ATPase Fphi_1274 236 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 167627679 Pathogen - hypothetical protein Fphi_1453 1 None None None 167626262 Common - hypothetical protein Fphi_0041 110 COG0397 COG0397, Uncharacterized conserved protein Function unknown 167626584 Common - UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase Fphi_0366 238 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 167626776 Common - Amino-acid N-acetyltransferase Fphi_0557 167 COG1364 ArgJ, N-acetylglutamate synthase (N-acetylornithine aminotransferase) Amino acid transport and metabolism 167627685 Common - hypothetical protein Fphi_1459 138 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 167626915 Common - ribonuclease II family protein Fphi_0693 185 COG0557 VacB, Exoribonuclease R Transcription 167627386 Common - KpsD protein Fphi_1161 58 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 167626862 Common - manganese/zinc/iron chelate uptake transporter family protein Fphi_0642 117 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 167626590 Common - integrase, catalytic region Fphi_0371 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627512 Common - inorganic phosphate/ATP-NAD kinase Fphi_1287 240 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 167627304 Common - conserved hypothetical 4-hydroxybenzoyl-CoA thioesterase Fphi_1080 59 COG0824 FcbC, Predicted thioesterase General function prediction only 167627594 Pathogen - hypothetical protein Fphi_1368 1 None None None 167627334 Common - diaminopimelate decarboxylase Fphi_1109 217 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 167626564 Common - Amino acid permease-like protein Fphi_0346 27 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 167627097 Pathogen - hypothetical protein Fphi_0873 1 None None None 167628100 Pathogen - hypothetical protein Fphi_1873 1 None None None 167626405 Common - hypothetical protein Fphi_0186 3 None None None 167627822 Common - L-lactate dehydrogenase Fphi_1597 114 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 167628022 Pathogen - dihydroneopterin aldolase Fphi_1794 3 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 167626257 Common - N-acetyl-beta-hexosaminidase-like protein Fphi_0036 20 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 167626644 Common - DNA repair protein RecN Fphi_0425 207 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 167627504 Common - hydrolase, TatD family Fphi_1278 237 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 167626661 Common - hypothetical protein Fphi_0442 2 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 167627062 Common - anthranilate synthase component II Fphi_0838 237 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 167627074 Common - metabolite:H+ symporter (MHS) family protein Fphi_0850 165 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 167626682 Common - hypothetical protein Fphi_0463 23 None None None 167626899 Common - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Fphi_0678 187 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 167626524 Common - Orotate phosphoribosyltransferase Fphi_0307 140 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 167626365 Common - Ornithine carbamoyltransferase Fphi_0143 200 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 167627237 Common - Tetraacyldisaccharide 4'-kinase Fphi_1012 130 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 167628105 Common - acyl-coenzyme A synthetase/AMP-(fatty) acid ligase Fphi_1878 213 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 167627462 Common - Acetyl-CoA C-acyltransferase Fphi_1236 182 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 167626351 Common - Prephenate dehydratase Fphi_0129 213 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 167626867 Common - Adenylosuccinate synthase Fphi_0647 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 167627274 Common - Methionine adenosyltransferase Fphi_1051 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 167627660 Common - ribonuclease E Fphi_1434 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 167626976 Common - UDP-N-acetylmuramate-alanine ligase Fphi_0754 211 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 167627722 Common - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Fphi_1496 189 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 167627289 Common - hypothetical protein Fphi_1065 35 COG3681 COG3681, Uncharacterized conserved protein Function unknown 167626707 Pathogen - hypothetical protein Fphi_0488 1 None None None 167626599 Pathogen - hypothetical protein Fphi_1924 1 None None None 167628007 Common - hypothetical protein Fphi_1779 2 None None None 167627067 Common - DNA-directed DNA polymerase Fphi_0843 216 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 167627753 Common - hypothetical protein Fphi_1526 17 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 167627130 Common - integrase, catalytic region Fphi_0906 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627983 Pathogen - hypothetical protein Fphi_1756 1 None None None 167627570 Common - major facilitator superfamily (MFS) transport protein Fphi_1344 20 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167627318 Common - excinuclease ATPase subunit Fphi_1094 13 None None None 167627728 Common - D-methionine transport protein, ABC transporter, ATP-binding subunit Fphi_1502 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 167628043 Pathogen - hypothetical protein Fphi_1815 1 None None None 167626808 Common - elongation factor G (EF-G) Fphi_0588 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 167627777 Common - Ketol-acid reductoisomerase Fphi_1550 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 167627898 Pathogen - hypothetical protein Fphi_1672 1 None None None 167626310 Pathogen - hypothetical protein Fphi_1923 2 COG2104 ThiS, Sulfur transfer protein involved in thiamine biosynthesis Coenzyme metabolism 167627003 Common - orotidine-5'-phosphate decarboxylase Fphi_0781 156 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 167627493 Common - Glycosyltransferase-like protein Fphi_1267 180 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 167626711 Common - 50S ribosomal protein L28 Fphi_0492 163 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 167627369 Common - Dephospho-CoA kinase Fphi_1144 197 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 167626938 Common - Riboflavin synthase Fphi_0716 230 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 167626906 Common - membrane protein of unknown function Fphi_0684 2 None None None 167627718 Common - glycerophosphoryl diester phosphodiesterase Fphi_1493 96 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 167627891 Common - tryptophan-rich sensory protein Fphi_1664 62 COG3476 COG3476, Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) Signal transduction mechanisms 167626476 Common - thioredoxin reductase Fphi_0259 246 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 167627854 Common - phosphonoacetate hydrolase Fphi_1629 105 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 167627265 Common - ribosomal protein L11 Fphi_1042 246 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 167626718 Common - hypothetical protein Fphi_0499 100 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 167627396 Common - dehydrogenase Fphi_1171 7 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 167626650 Common - superoxide dismutase (Cu-Zn) precusor Fphi_0431 85 COG2032 SodC, Cu/Zn superoxide dismutase Inorganic ion transport and metabolism 167626648 Common - amino acid transporter (AAT) family protein Fphi_0430 106 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 167627226 Common - hypothetical protein Fphi_1002 111 COG1090 COG1090, Predicted nucleoside-diphosphate sugar epimerase General function prediction only 167626544 Common - phosphoglucomutase Fphi_0327 230 COG0033 Pgm, Phosphoglucomutase Carbohydrate transport and metabolism 167627681 Common - Lactoylglutathione lyase Fphi_1455 133 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 167626386 Common - metallopeptidase, M16 family Fphi_0164 201 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 167626934 Common - Na+/H+ antiporter Fphi_0712 140 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 167626504 Common - peptidase, S49 (protease IV) family protein Fphi_0287 189 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 167627741 Pathogen - hypothetical protein Fphi_1515 1 None None None 167626246 Common - hypothetical protein Fphi_0025 135 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 167626977 Common - shikimate 5-dehydrogenase Fphi_0755 151 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 167626961 Common - phospholipase C Fphi_0739 26 COG3511 PlcC, Phospholipase C Cell envelope biogenesis, outer membrane 167628086 Common - integrase, catalytic region Fphi_1859 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627484 Common - hypothetical protein Fphi_1258 18 COG2152 COG2152, Predicted glycosylase Carbohydrate transport and metabolism 167628054 Common - hypothetical protein Fphi_1826 62 COG3943 COG3943, Virulence protein General function prediction only 167627974 Pathogen - hypothetical protein Fphi_1748 1 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 167626267 Common - integrase, catalytic region Fphi_0047 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627013 Pathogen - hypothetical protein Fphi_1914 1 None None None 167627675 Pathogen - hypothetical protein Fphi_1449 1 None None None 167626395 Common - Serine--tRNA ligase Fphi_0173 244 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 167627475 Common - GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase Fphi_1249 167 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 167626531 Common - Aspartate-semialdehyde dehydrogenase Fphi_0314 200 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 167626339 Common - type IV pili ATPase Fphi_0117 214 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 167628028 Common - 8-amino-7-oxononanoate synthase Fphi_1800 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 167626613 Common - Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) Fphi_0394 198 COG0281 SfcA, Malic enzyme Energy production and conversion 167628047 Common - putative membrane transporter of cations and cationic drugs, multidrug resistance protein Fphi_1819 65 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 167626926 Common - Calcium-transporting ATPase Fphi_0704 241 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 167627177 Common - Lysozyme Fphi_0953 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 167626334 Pathogen - hypothetical protein Fphi_0112 1 None None None 167628065 Common - phage transcriptional regulator, AlpA Fphi_1931 40 COG3311 AlpA, Predicted transcriptional regulator Transcription 167627342 Common - chaperone protein Dna J Fphi_1117 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 167627427 Common - Lipid-A-disaccharide synthase Fphi_1201 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 167626723 Common - 3-demethylubiquinone-9 3-O-methyltransferase Fphi_0504 110 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 167626346 Common - hypothetical protein Fphi_0124 144 COG0316 IscA, Uncharacterized conserved protein Function unknown 167627122 Common - peptidase, U32 family Fphi_0898 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 167626275 Common - hypothetical protein Fphi_0054 64 COG2914 COG2914, Uncharacterized protein conserved in bacteria Function unknown 167627345 Common - integrase, catalytic region Fphi_1120 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627875 Common - YjeF-related protein Fphi_1649 222 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 167626317 Common - oxidoreductase, short-chain dehydrogenase family protein Fphi_0095 237 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 167627015 Common - hypothetical protein Fphi_0792 2 None None None 167626457 Common - pyridoxine/pyridoxal 5-phosphate biosynthesis protein Fphi_0240 87 COG0214 SNZ1, Pyridoxine biosynthesis enzyme Coenzyme metabolism 167626360 Common - integrase, catalytic region Fphi_0139 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627114 Common - hypothetical protein Fphi_0889 3 None None None 167626888 Common - membrane protein of unknown function Fphi_0667 2 None None None 167627730 Common - Queuine tRNA-ribosyltransferase Fphi_1504 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 167626321 Common - glucose inhibited division protein A Fphi_0099 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 167627339 Common - CDP-alcohol phosphatidyltransferase family protein Fphi_1114 14 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 167627438 Common - tRNA pseudouridine synthase B Fphi_1212 245 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 167627941 Common - S-methyl-5-thioadenosine phosphorylase Fphi_1715 183 COG0657 Aes, Esterase/lipase Lipid metabolism 167626249 Pathogen - hypothetical protein Fphi_0028 1 None None None 167626293 Common - hypothetical protein Fphi_0073 15 COG1434 COG1434, Uncharacterized conserved protein Function unknown 167627326 Common - oxidoreductase, short-chain dehydrogenase/reductase family Fphi_1101 233 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 167626450 Common - 30S ribosomal protein S15 Fphi_0233 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 167627297 Common - modification methylase, HemK family Fphi_1074 229 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 167626232 Common - Nucleoside-triphosphate--adenylate kinase Fphi_0011 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 167626704 Common - multiple antibiotic resistance (MarC)-related protein Fphi_0485 141 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 167626626 Common - hypothetical protein Fphi_0407 2 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 167626309 Common - ThiG protein thiamine biosynthesis Fphi_0088 166 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 167626761 Common - ribosomal protein L31 Fphi_0542 208 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 167627418 Common - integrase, catalytic region Fphi_1192 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627615 Common - hypothetical protein Fphi_1388 20 COG1289 COG1289, Predicted membrane protein Function unknown 167627770 Common - HflK-HflC membrane protein complex, HflC Fphi_1543 212 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 167626435 Common - serine permease Fphi_0218 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 167627456 Common - Ornithine cyclodeaminase Fphi_1230 86 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 167627149 Common - diaminobutyrate decarboxylase Fphi_0925 115 COG0076 GadB, Glutamate decarboxylase and related PLP-dependent proteins Amino acid transport and metabolism 167627360 Pathogen - pilus assembly protein Fphi_1135 1 None None None 167626784 Common - 30S ribosomal protein S11 Fphi_0565 247 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 167628133 Common - hypothetical protein Fphi_1908 17 COG2938 COG2938, Uncharacterized conserved protein Function unknown 167626911 Pathogen - hypothetical protein Fphi_0689 1 None None None 167627631 Pathogen - lipoprotein, putative Fphi_1405 1 None None None 167627763 Common - hypothetical protein Fphi_1536 97 None None None 167626343 Common - 4Fe-4S ferredoxin Fphi_0121 113 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 167626737 Pathogen - hypothetical protein Fphi_0518 1 COG4966 PilW, Tfp pilus assembly protein PilW Cell motility and secretion / Intracellular trafficking and secretion 167627153 Common - NADH dehydrogenase I, A subunit Fphi_0929 155 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 167626291 Common - metabolite:H+ symporter (MHS) family protein Fphi_0070 157 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167628130 Common - MFS family major facilitator transporter Fphi_1905 43 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626449 Common - Polyribonucleotide nucleotidyltransferase Fphi_0232 233 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 167627866 Common - Transcriptional regulator-like protein Fphi_1640 191 COG0583 LysR, Transcriptional regulator Transcription 167627084 Common - acyltransferase Fphi_0860 156 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 167626811 Common - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Fphi_0591 204 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 167627191 Common - peptide-acetyl-coenzyme A transporter (PAT) family protein Fphi_0967 110 None None None 167626677 Common - hypothetical protein Fphi_0458 40 COG2964 COG2964, Uncharacterized protein conserved in bacteria Function unknown 167626312 Common - thiamin biosynthesis protein Fphi_0090 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 167626536 Common - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase Fphi_0319 212 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 167626411 Common - putative ribosomal protein L11 Fphi_0192 6 None None None 167627708 Common - ribokinase, PfkB family Fphi_1482 156 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 167626835 Pathogen - hypothetical protein Fphi_0615 1 None None None 167627991 Common - transcriptional regulator Fphi_1764 136 COG1959 COG1959, Predicted transcriptional regulator Transcription 167627585 Common - Fructose-bisphosphate aldolase Fphi_1359 176 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 167628040 Common - glutamate-1-semialdehyde-2,1-aminomutase Fphi_1812 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 167626420 Pathogen - hypothetical protein Fphi_0201 1 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 167626751 Common - lipoprotein releasing system, subunit A Fphi_0532 78 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 167627732 Common - hypothetical protein Fphi_1507 3 None None None 167627701 Common - glycosyl transferase, group 1 Fphi_1475 171 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 167627596 Pathogen - hypothetical protein Fphi_1370 1 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 167627189 Common - glutaredoxin-related protein Fphi_0965 126 COG0278 COG0278, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 167628074 Common - anti-ECFsigma factor, ChrR Fphi_1844 16 COG3806 ChrR, Transcriptional activator Transcription 167627162 Pathogen - NADH dehydrogenase I, J subunit Fphi_0938 1 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 167627878 Pathogen - hypothetical protein Fphi_1652 1 None None None 167627561 Common - Pantoate--beta-alanine ligase Fphi_1335 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 167627888 Common - hypothetical protein Fphi_1662 16 None None None 167627538 Common - sulfur acceptor protein SufE Fphi_1312 95 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 167626298 Pathogen - hypothetical protein Fphi_0077 1 COG3153 COG3153, Predicted acetyltransferase General function prediction only 167627810 Common - Beta-lactamase Fphi_1585 46 COG2367 PenP, Beta-lactamase class A Defense mechanisms 167626289 Common - Histidinol dehydrogenase Fphi_0068 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 167627523 Common - hypothetical protein Fphi_1298 100 COG0730 COG0730, Predicted permeases General function prediction only 167626864 Common - permease of ABC transporter Fphi_0644 185 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 167627689 Common - hypothetical protein Fphi_1463 63 COG3220 COG3220, Uncharacterized protein conserved in bacteria Function unknown 167627947 Common - Holliday junction DNA helicase, subunit B Fphi_1721 221 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 167627376 Common - hypothetical protein Fphi_1151 5 None None None 167627119 Common - Na+:H+ antiporter Fphi_0894 38 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 167626513 Common - Phospho-N-acetylmuramoyl-pentapeptide-transferase Fphi_0296 221 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 167627211 Common - phage terminase, small subunit Fphi_0986 5 COG3728 XtmA, Phage terminase, small subunit DNA replication, recombination, and repair 167627723 Common - rhodanese-like family protein Fphi_1497 151 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 167627824 Common - hypothetical protein Fphi_1599 3 None None None 167626638 Common - Phosphoribosylformylglycinamidine cyclo-ligase Fphi_0419 232 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 167626464 Common - succinyl-CoA synthetase, alpha subunit Fphi_0247 214 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 167628117 Pathogen - hypothetical protein Fphi_1889 1 None None None 167627964 Common - nucleotide-binding protein Fphi_1738 233 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 167628103 Pathogen - hypothetical protein Fphi_1876 1 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 167627696 Common - ATP-binding cassette (ABC) superfamily protein Fphi_1470 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 167626489 Pathogen - hypothetical protein Fphi_0272 1 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 167627205 Common - regulatory protein, AlpA family Fphi_1927 39 COG3311 AlpA, Predicted transcriptional regulator Transcription 167627901 Common - Alanine--tRNA ligase Fphi_1675 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 167626429 Common - integrase, catalytic region Fphi_0210 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626319 Pathogen - hypothetical protein Fphi_0097 1 COG1289 COG1289, Predicted membrane protein Function unknown 167627960 Common - conserved hypothetical lipoprotein Fphi_1734 2 None None None 167627258 Common - major intrinsic protein (MIP) family permease Fphi_1035 134 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 167627053 Pathogen - hypothetical protein Fphi_0830 1 None None None 167628024 Common - lipase/esterase Fphi_1796 136 COG0657 Aes, Esterase/lipase Lipid metabolism 167627243 Common - nucleoside permease NUP family protein Fphi_1018 68 COG1972 NupC, Nucleoside permease Nucleotide transport and metabolism 167627869 Common - Catalase Fphi_1643 126 COG0753 KatE, Catalase Inorganic ion transport and metabolism 167626843 Common - TPR repeat protein Fphi_0623 38 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 167627541 Pathogen - hypothetical protein Fphi_1315 1 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 167626227 Common - type IV pili secretin component Fphi_0006 143 COG4796 HofQ, Type II secretory pathway, component HofQ Intracellular trafficking and secretion 167626877 Common - endonuclease Fphi_0656 35 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 167626908 Common - ABC-type anion transport system, duplicated permease component Fphi_0686 133 COG4986 COG4986, ABC-type anion transport system, duplicated permease component Inorganic ion transport and metabolism 167627553 Common - hypothetical protein Fphi_1327 4 COG4129 COG4129, Predicted membrane protein Function unknown 167627655 Common - glycosyl transferase group 1 family protein Fphi_1429 224 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 167627990 Common - SufS activator complex, SufB subunit Fphi_1763 184 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 167626749 Common - phosphatidic acid phosphatase, PAP2 superfamily Fphi_0530 17 COG3907 COG3907, PAP2 (acid phosphatase) superfamily protein General function prediction only 167627521 Common - uncharacterized NAD(FAD)-dependent dehydrogenase Fphi_1295 244 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 167626576 Common - hypothetical protein Fphi_0358 9 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 167627384 Common - putative capsule polysaccharide export transport system ATP-binding protein Fphi_1159 249 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 167626850 Common - pyridoxal kinase Fphi_0630 73 COG2240 PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase Coenzyme metabolism 167626917 Common - aspartyl-tRNA synthetase Fphi_0695 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 167626475 Common - phosphoglycolate phosphatase Fphi_0258 206 COG0546 Gph, Predicted phosphatases General function prediction only 167626574 Common - Adenosylhomocysteine nucleosidase Fphi_0356 89 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 167627573 Common - beta-ketoacyl-ACP synthase II Fphi_1347 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 167626753 Pathogen - hypothetical protein Fphi_0534 1 None None None 167626741 Pathogen - pilus assembly protein Fphi_0522 1 COG4966 PilW, Tfp pilus assembly protein PilW Cell motility and secretion / Intracellular trafficking and secretion 167626372 Common - hypothetical protein Fphi_0150 4 None None None 167626853 Common - cytochrome d ubiquinol oxidase subunit I Fphi_0633 165 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 167627272 Common - O-sialoglycoprotein endopeptidase Fphi_1049 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 167627608 Common - GTPase of unknown function Fphi_1382 230 COG0486 ThdF, Predicted GTPase General function prediction only 167627138 Common - Glu-tRNAGln amidotransferase C subunit Fphi_0914 31 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 167627544 Pathogen - hypothetical protein Fphi_1318 1 None None None 167627400 Common - Transposase-like protein Fphi_1175 60 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 167627795 Common - Holliday junction DNA helicase, subunit A Fphi_1568 212 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 167626235 Common - GTP-binding protein Fphi_0014 237 COG1159 Era, GTPase General function prediction only 167626416 Common - ABC transporter, ATP-binding protein Fphi_0197 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 167627510 Common - ATP-binding cassette (ABC) superfamily protein Fphi_1284 158 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 167626778 Common - ornithine carbamoyltransferase Fphi_0559 240 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 167627144 Common - putative transmembrane transport protein Fphi_0920 111 None None None 167627912 Common - ribosomal protein L9 Fphi_1686 215 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 167626607 Pathogen - hypothetical protein Fphi_0388 1 None None None 167627919 Pathogen - hypothetical protein Fphi_1693 1 None None None 167627677 Pathogen - hypothetical protein Fphi_1451 1 None None None 167627442 Common - hypothetical protein Fphi_1216 36 None None None 167626796 Common - 50S ribosomal protein L14 Fphi_0577 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 167627473 Common - GDP-D-mannose dehydratase Fphi_1247 222 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 167626553 Common - hypothetical protein Fphi_0335 33 COG4889 COG4889, Predicted helicase General function prediction only 167627449 Pathogen - hypothetical protein Fphi_1223 1 None None None 167627108 Common - acyl carrier protein phosphodiesterase Fphi_0884 97 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 167627509 Common - ATP-binding cassette (ABC) superfamily protein Fphi_1283 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 167627809 Common - Aminoacyl-tRNA hydrolase Fphi_1584 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 167626566 Pathogen - hypothetical protein Fphi_0348 1 None None None 167627842 Common - Ribonucleoside-diphosphate reductase Fphi_1617 146 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 167627216 Common - hypothetical protein Fphi_0992 4 COG3212 COG3212, Predicted membrane protein Function unknown 167627031 Common - serine permease Fphi_0808 38 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 167627629 Common - 2-alkenal reductase Fphi_1403 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 167627956 Common - Phenylalanine--tRNA ligase Fphi_1730 247 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 167627817 Common - ATP-dependent protease HslVU, peptidase subunit Fphi_1592 154 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 167627928 Common - hypothetical protein Fphi_1702 151 COG1610 COG1610, Uncharacterized conserved protein Function unknown 167627409 Common - integrase, catalytic region Fphi_1184 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627819 Common - lipoate-protein ligase A Fphi_1594 61 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 167627048 Pathogen - hypothetical protein Fphi_0825 1 None None None 167627645 Common - hypothetical protein Fphi_1419 37 COG2992 Bax, Uncharacterized FlgJ-related protein General function prediction only 167627301 Common - hypothetical protein Fphi_1077 3 None None None 167627517 Common - guanine deaminase Fphi_1291 166 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 167627020 Common - response regulator receiver protein Fphi_0797 8 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 167627572 Common - hypothetical protein Fphi_1345 25 COG2350 COG2350, Uncharacterized protein conserved in bacteria Function unknown 167626945 Pathogen - hypothetical protein Fphi_0723 3 None None None 167627832 Common - Lysine 2,3-aminomutase Fphi_1607 126 COG1509 KamA, Lysine 2,3-aminomutase Amino acid transport and metabolism 167627800 Common - monovalent cation:proton antiporter family protein Fphi_1574 209 COG4651 RosB, Kef-type K+ transport system, predicted NAD-binding component Inorganic ion transport and metabolism 167626822 Pathogen - hypothetical protein Fphi_0602 1 None None None 167627026 Common - Thiopurine S-methyltransferase Fphi_0803 28 None None None 167627847 Common - hypothetical protein Fphi_1623 48 COG2941 CAT5, Ubiquinone biosynthesis protein COQ7 Coenzyme metabolism 167627644 Common - ABC-type transport system permease protein Fphi_1418 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 167626561 Common - ABC transporter, involved in lipoprotein release, permease component Fphi_0343 175 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 167626840 Common - hypothetical protein Fphi_0620 5 None None None 167628027 Common - Biotin synthase Fphi_1799 177 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 167627954 Common - drug/metabolite transporter superfamily protein Fphi_1728 154 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 167626848 Common - MoxR-like ATPase Fphi_0628 174 COG0714 COG0714, MoxR-like ATPases General function prediction only 167627816 Common - ATP-dependent protease HslVU, ATPase subunit Fphi_1591 211 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 167627021 Common - integrase, catalytic region Fphi_0798 14 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626441 Common - ROK family protein Fphi_0224 150 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 167626872 Common - Glutamate--ammonia ligase Fphi_0652 74 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 167627506 Common - hypothetical protein Fphi_1280 11 COG5418 COG5418, Predicted secreted protein Function unknown 167626391 Common - uridine phosphorylase Fphi_0169 102 COG2820 Udp, Uridine phosphorylase Nucleotide transport and metabolism 167627037 Common - hydrogenase expression/formation protein HypD Fphi_0814 109 COG0409 HypD, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 167627214 Pathogen - transcriptional regulator, LysR family Fphi_0989 1 None None None 167627807 Pathogen - lipoprotein, putative Fphi_1582 1 None None None 167627324 Common - chaperonin GroEL (HSP60 family) Fphi_1099 246 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 167627856 Pathogen - hypothetical protein Fphi_1631 1 None None None 167627362 Pathogen - hypothetical protein Fphi_1137 1 None None None 167626739 Pathogen - pilus assembly protein Fphi_0520 1 None None None 167627416 Pathogen - hypothetical protein Fphi_1190 1 None None None 167628123 Common - hypothetical protein Fphi_1898 49 COG3216 COG3216, Uncharacterized protein conserved in bacteria Function unknown 167626730 Common - transposase, mutator family Fphi_0511 87 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 167626551 Common - GDSL-like lipolytic enzyme Fphi_0334 27 COG3240 COG3240, Phospholipase/lecithinase/hemolysin Lipid metabolism / General function prediction only 167626618 Common - ribosomal RNA large subunit methyltransferase J Fphi_0399 138 COG0293 FtsJ, 23S rRNA methylase Translation, ribosomal structure and biogenesis 167627835 Common - putative cold-shock DNA-binding domain protein Fphi_1610 180 COG1278 CspC, Cold shock proteins Transcription 167626819 Common - Dihydrofolate reductase Fphi_0600 149 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 167627844 Common - Ribonucleoside-diphosphate reductase Fphi_1619 220 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 167627921 Common - polyprenyl synthetase family protein Fphi_1695 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 167627129 Common - Phosphoribosylformylglycinamidine synthase Fphi_0905 232 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 167627404 Common - putative desulfatase Fphi_1178 19 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 167626913 Common - Hydroxymethylbilane synthase Fphi_0691 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 167628049 Common - phage integrase Fphi_1821 99 COG0582 XerC, Integrase DNA replication, recombination, and repair 167627672 Common - ATP-dependent RNA helicase, DEAD/DEAH box family Fphi_1446 242 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 167626433 Common - Glycine C-acetyltransferase Fphi_0216 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 167626996 Common - beta-fructofuranosidase Fphi_0774 53 COG1621 SacC, Beta-fructosidases (levanase/invertase) Carbohydrate transport and metabolism 167627253 Common - major facilitator superfamily (MFS) transport protein Fphi_1030 106 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626743 Common - transporter-associated protein, HlyC/CorC family Fphi_0524 215 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 167626940 Pathogen - hypothetical protein Fphi_0718 1 None None None 167627563 Common - hypothetical protein Fphi_1337 13 COG5495 COG5495, Uncharacterized conserved protein Function unknown 167627657 Common - D-3-phosphoglycerate dehydrogenase Fphi_1431 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 167627279 Common - site-specific recombinase Fphi_1056 229 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 167626918 Common - nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Fphi_0696 187 COG0388 COG0388, Predicted amidohydrolase General function prediction only 167626473 Common - copper homeostasis protein CutC family protein Fphi_0256 57 COG3142 CutC, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 167627132 Common - galactose mutarotase Fphi_0908 43 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 167626375 Common - Microtubule-severing ATPase Fphi_0153 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 167627558 Common - Exodeoxyribonuclease V Fphi_1332 144 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 167627758 Common - trigger factor (TF) protein (peptidyl-prolyl cis/trans isomerase) Fphi_1531 219 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 167627515 Pathogen - hypothetical protein Fphi_1289 1 None None None 167627141 Pathogen - hypothetical protein Fphi_0917 1 None None None 167627798 Common - hypothetical protein Fphi_1571 10 None None None 167627207 Common - hypothetical protein Fphi_0982 14 None None None 167626611 Pathogen - hypothetical protein Fphi_0392 1 COG3883 COG3883, Uncharacterized protein conserved in bacteria Function unknown 167627555 Pathogen - hypothetical protein Fphi_1329 1 COG2351 COG2351, Transthyretin-like protein General function prediction only 167626774 Common - ornithine aminotransferase Fphi_0554 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 167627163 Common - NADH dehydrogenase I, K subunit Fphi_0939 26 COG0713 NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) Energy production and conversion 167626266 Pathogen - hypothetical protein Fphi_0045 1 None None None 167627124 Common - protein-L-isoaspartate O-methyltransferase Fphi_0900 125 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 167626401 Common - ABC-type transport ATP-binding protein CydD Fphi_0179 249 COG4988 CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 167627935 Common - Inorganic diphosphatase Fphi_1709 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 167626421 Common - oxidoreductase, short chain dehydrogenase/reductase family Fphi_0202 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 167626901 Common - carbonic anhydrase/acetyltransferase, isoleucine patch superfamily Fphi_0680 186 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 167626869 Common - serine permease Fphi_0649 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 167627466 Common - arsenate reductase Fphi_1240 80 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 167626854 Common - Alkaline phosphatase Fphi_0634 156 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 167626756 Common - activator of osmoprotectant transporter ProP Fphi_0537 20 COG3109 ProQ, Activator of osmoprotectant transporter ProP Signal transduction mechanisms 167626857 Common - nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein Fphi_0637 49 COG3201 PnuC, Nicotinamide mononucleotide transporter Coenzyme metabolism 167627280 Pathogen - hypothetical protein Fphi_1916 1 None None None 167626665 Common - transcriptional regulator, LysR family Fphi_0446 183 COG0583 LysR, Transcriptional regulator Transcription 167627005 Pathogen - hypothetical protein Fphi_0783 2 COG1605 PheA, Chorismate mutase Amino acid transport and metabolism 167626810 Common - 30S ribosomal protein S12 Fphi_0590 241 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 167627914 Common - radical SAM superfamily protein Fphi_1688 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 167627530 Pathogen - hypothetical protein Fphi_1304 1 None None None 167626804 Common - 50S ribosomal protein L23 Fphi_0584 219 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 167628099 Pathogen - hypothetical protein Fphi_1872 1 COG3755 COG3755, Uncharacterized protein conserved in bacteria Function unknown 167627453 Common - hypothetical protein Fphi_1227 6 None None None 167627691 Common - hypothetical protein Fphi_1465 9 COG2259 COG2259, Predicted membrane protein Function unknown 167627965 Common - dCTP deaminase Fphi_1739 149 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 167626491 Common - acetyl-CoA carboxylase, biotin carboxy carrier protein subunit Fphi_0274 188 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 167627981 Common - hypothetical protein Fphi_1754 122 COG1678 COG1678, Putative transcriptional regulator Transcription 167626622 Common - glutamine amidotransferase, class I Fphi_0403 140 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 167627170 Common - hypothetical protein Fphi_0946 161 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 167628045 Common - putative transcriptional regulator, ArsR family Fphi_1817 107 COG0640 ArsR, Predicted transcriptional regulators Transcription 167626498 Common - Alkaline phosphatase Fphi_0281 80 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 167627998 Common - signal recognition particle protein Fphi_1770 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 167627180 Common - ATP synthase, F0 sector, subunit A Fphi_0956 207 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 167627351 Pathogen - thymosin beta-4 family Fphi_1126 1 None None None 167626631 Common - hypothetical protein Fphi_0412 22 COG3737 COG3737, Uncharacterized conserved protein Function unknown 167627179 Pathogen - hypothetical protein Fphi_0955 1 None None None 167626900 Common - lipoprotein releasing system, subunit B, outer membrane lipoprotein Fphi_0679 51 COG3017 LolB, Outer membrane lipoprotein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 167627241 Common - Deoxyribose-phosphate aldolase Fphi_1016 135 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 167626588 Pathogen - hypothetical protein Fphi_0369 1 None None None 167626404 Common - hypothetical protein Fphi_0184 28 None None None 167627196 Common - Succinate dehydrogenase (ubiquinone) Fphi_0972 199 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 167627046 Common - (putative) drug resistance ATPase-1 (drug RA1) family protein Fphi_0823 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 167627698 Common - putative glycerol-3-phosphate cytidyltransferase Fphi_1472 114 COG0615 TagD, Cytidylyltransferase Cell envelope biogenesis, outer membrane / Lipid metabolism 167626387 Common - metallopeptidase M16 family Fphi_0165 115 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 167627581 Common - transketolase I Fphi_1355 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 167627861 Common - NAD-dependent aldehyde dehydrogenase Fphi_1636 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 167627543 Common - hypothetical protein Fphi_1317 4 None None None 167626583 Common - glucosamine--fructose-6-phosphate aminotransferase, isomerizing Fphi_0365 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 167627086 Pathogen - hypothetical protein Fphi_0862 1 None None None 167627079 Common - integrase, catalytic region Fphi_0856 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627887 Common - thioesterase superfamily protein Fphi_1661 27 COG0824 FcbC, Predicted thioesterase General function prediction only 167627287 Common - phosphatidic acid phosphatase (PAP2) family protein, membrane associated Fphi_1063 9 None None None 167626353 Common - Alanine racemase Fphi_0131 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 167627704 Common - glycosyl transferase, family 2 Fphi_1478 180 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 167626688 Pathogen - group A colicin translocation; TolA protein Fphi_0469 1 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 167626460 Common - tRNA-dihydrouridine synthase Fphi_0243 205 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 167627424 Common - UDP-3-O-(3-hydroxy-fatty acid)-glucosamine N-acyltransferase Fphi_1198 177 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 167627069 Common - aspartate/glutamate transporter Fphi_0845 173 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 167627868 Common - short chain dehydrogenase Fphi_1642 39 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 167626414 Common - ABC -2 type transporter Fphi_0195 170 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 167626426 Common - MATE efflux family protein Fphi_0207 69 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 167627217 Common - Coproporphyrinogen dehydrogenase Fphi_0991 205 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 167626884 Common - D-alanine--D-alanine ligase Fphi_0663 224 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 167626788 Common - 50S ribosomal protein L30 Fphi_0569 99 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 167627905 Pathogen - hypothetical protein Fphi_1679 1 None None None 167627967 Common - integrase, catalytic region Fphi_1741 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626672 Common - 4-hydroxybenzoate octaprenyltransferase Fphi_0453 164 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 167627588 Common - hypothetical protein Fphi_1362 120 COG2377 COG2377, Predicted molecular chaperone distantly related to HSP70-fold metalloproteases Posttranslational modification, protein turnover, chaperones 167628113 Pathogen - hypothetical protein Fphi_1886 1 None None None 167626974 Pathogen - hypothetical protein Fphi_0752 1 None None None 167627055 Common - hypothetical protein Fphi_1915 2 COG5304 COG5304, Uncharacterized protein conserved in bacteria Function unknown 167627818 Pathogen - hypothetical protein Fphi_1593 1 None None None 167626556 Common - Glycine dehydrogenase (decarboxylating) Fphi_0338 172 COG0403 GcvP, Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain Amino acid transport and metabolism 167626315 Common - excinuclease ABC, B subunit Fphi_0093 232 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 167627920 Pathogen - hypothetical protein Fphi_1694 1 None None None 167626256 Common - hypothetical protein Fphi_0035 105 COG0327 COG0327, Uncharacterized conserved protein Function unknown 167627762 Common - DNA-binding protein HU-beta Fphi_1535 213 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 167627357 Common - protein-export chaperone SecB Fphi_1132 108 COG1952 SecB, Preprotein translocase subunit SecB Intracellular trafficking and secretion 167626385 Common - conserved membrane protein of unknown function Fphi_0163 71 COG0795 COG0795, Predicted permeases General function prediction only 167626693 Common - chorismate mutase Fphi_0474 39 COG4401 AroH, Chorismate mutase Amino acid transport and metabolism 167626886 Common - 30S ribosomal protein S1 Fphi_0665 241 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 167626373 Pathogen - hypothetical protein Fphi_0151 1 None None None 167627374 Common - oligoketide cyclase/lipid transport protein Fphi_1149 7 COG2867 COG2867, Oligoketide cyclase/lipid transport protein Lipid metabolism 167627627 Common - membrane-bound lytic murein transglycosylase Fphi_1401 93 COG2821 MltA, Membrane-bound lytic murein transglycosylase Cell envelope biogenesis, outer membrane 167627871 Common - Glutathione peroxidase Fphi_1645 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 167626951 Pathogen - hypothetical protein Fphi_0730 1 None None None 167626237 Common - hypothetical protein Fphi_0016 55 COG0121 COG0121, Predicted glutamine amidotransferase General function prediction only 167627636 Common - transcriptional regulator AraC family protein Fphi_1410 84 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 167628023 Common - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, Dihydropteroate synthase Fphi_1795 206 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 167626243 Common - O-methyltransferase family protein Fphi_0022 80 COG4122 COG4122, Predicted O-methyltransferase General function prediction only 167627663 Common - DNA repair protein RecO Fphi_1437 60 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 167627771 Common - low molecular weight phosphotyrosine protein phosphatase Fphi_1544 135 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 167628125 Common - Ferrochelatase Fphi_1900 159 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 167627440 Common - delta 9 acyl-lipid fatty acid desaturase Fphi_1214 70 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 167627000 Common - Prephenate dehydrogenase Fphi_0779 96 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 167626763 Common - multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) transporter Fphi_0544 188 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 167626302 Pathogen - hypothetical protein Fphi_0081 1 None None None 167626579 Common - pyrophosphatase Fphi_0361 3 None None None 167627498 Common - thioredoxin Fphi_1272 234 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 167626701 Common - xanthine/uracil permease family/inorganic anion transporter, sulfate permease (SulP) family protein Fphi_0482 134 COG2252 COG2252, Permeases General function prediction only 167627050 Common - hypothetical protein Fphi_0827 101 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 167626685 Common - peptidoglycan-associated lipoprotein, OmpA family Fphi_0466 145 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 167627769 Common - HflK-HflC membrane protein complex, HflK Fphi_1542 207 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 167626824 Common - fumarate hydratase, class II Fphi_0604 231 COG0114 FumC, Fumarase Energy production and conversion 167626487 Common - tRNA synthetase, class II (D, K and N) Fphi_0270 203 COG2269 COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 167627591 Common - intracellular growth locus, subunit B Fphi_1365 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 167626920 Common - betaine-homocysteine methyltransferase Fphi_0698 159 COG0646 MetH, Methionine synthase I (cobalamin-dependent), methyltransferase domain Amino acid transport and metabolism 167627447 Common - two-component regulator, sensor histidine kinase Fphi_1221 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 167626629 Pathogen - hypothetical protein Fphi_0410 1 None None None 167627487 Common - Glycosyltransferase involved in cell wall biogenesis-like protein Fphi_1261 193 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 167628097 Common - TatD family hydrolase Fphi_1870 223 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 167627478 Common - dTDP-4-dehydrorhamnose reductase Fphi_1252 181 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 167626480 Pathogen - hypothetical protein Fphi_0263 1 None None None 167627433 Common - HAM1 protein Fphi_1207 237 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 167627018 Pathogen - hypothetical protein Fphi_0795 1 None None None 167626893 Common - glutathione synthase/ribosomal protein S6 modification enzyme Fphi_0672 77 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 167626332 Common - threonyl-tRNA synthetase Fphi_0110 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 167626496 Common - organic solvent tolerance protein, OstA Fphi_0279 110 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 167626879 Common - DNA-directed DNA polymerase Fphi_0659 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 167627414 Common - uracil-DNA glycosylase Fphi_1188 129 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 167627308 Common - aconitate hydratase Fphi_1084 42 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 167627616 Common - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor Fphi_1390 17 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 167627435 Common - response regulator receiver protein Fphi_1209 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 167627598 Common - hypothetical protein Fphi_1372 4 None None None 167627996 Common - hypothetical protein Fphi_1769 46 COG0730 COG0730, Predicted permeases General function prediction only 167627482 Common - WblP protein Fphi_1256 24 None None None 167627426 Common - Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase Fphi_1200 147 COG1043 LpxA, Acyl- acyl carrier protein 167626277 Common - SsrA (tmRNA)-binding protein Fphi_0056 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 167626281 Common - hypothetical protein Fphi_0060 11 COG3719 Rna, Ribonuclease I Translation, ribosomal structure and biogenesis 167626533 Common - D-alanyl-D-alanine-adding enzyme Fphi_0316 213 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 167627402 Common - transposase for IS1106 Fphi_1176 53 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 167627630 Common - chaperone protein DnaJ (heat shock protein 70 family cofactor) Fphi_1404 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 167627347 Common - 10 TMS drug/metabolite exporter protein Fphi_1121 119 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 167627168 Common - magnesium chelatase Fphi_0944 197 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 167626348 Common - L-serine ammonia-lyase Fphi_0126 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 167627007 Common - transcriptional regulator, LysR family Fphi_0785 162 COG0583 LysR, Transcriptional regulator Transcription 167628062 Pathogen - hypothetical protein Fphi_1834 5 None None None 167627087 Common - Phosphoribosylaminoimidazole carboxylase Fphi_0863 209 COG0027 PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Nucleotide transport and metabolism 167626337 Common - hypothetical protein Fphi_0115 133 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 167627137 Common - membrane fusion protein Fphi_0913 72 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 167626592 Common - hypothetical protein Fphi_0374 3 None None None 167626640 Common - lipid A 1-phosphatase Fphi_0421 59 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 167628001 Common - Iss Fphi_1773 6 None None None 167626361 Common - hypothetical protein Fphi_0138 7 COG3670 COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 167626439 Common - major facilitator superfamily Fphi_0222 65 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167628110 Common - integrase, catalytic region Fphi_1884 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627793 Common - Crossover junction endodeoxyribonuclease Fphi_1566 197 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 167627945 Common - GDSL-like lipolytic enzyme Fphi_1719 108 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 167626503 Common - DNA polymerase III, delta prime subunit Fphi_0286 21 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 167626935 Common - pyrimidine reductase/pyrimidine deaminase Fphi_0713 229 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 167627826 Common - 4Fe-4S ferredoxin, FAD dependent Fphi_1601 200 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 167627338 Common - dihydrolipoamide dehydrogenase Fphi_1113 240 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 167628115 Pathogen - hypothetical protein Fphi_1888 1 None None None 167627398 Common - capsule polysaccharide export protein KpsC Fphi_1173 30 COG3563 KpsC, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 167626652 Common - peptide methionine sulfoxide reductase-related protein Fphi_0433 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 167627896 Common - 4Fe-4S ferredoxin Fphi_1670 131 COG1600 COG1600, Uncharacterized Fe-S protein Energy production and conversion 167626983 Common - acyltransferase Fphi_0761 100 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 167626601 Common - ubiquinone/menaquinone biosynthesis methyltransferase Fphi_0382 220 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 167627716 Common - transposase and inactivated derivative Fphi_1490 75 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 167626278 Common - hypothetical protein Fphi_0057 159 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 167626982 Common - conserved membrane protein of unknown function Fphi_0760 213 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 167627230 Common - protein of unknown function DUF1722 Fphi_1005 63 COG1683 COG1683, Uncharacterized conserved protein Function unknown 167626939 Common - Peptide deformylase Fphi_0717 213 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 167626870 Common - outer membrane lipoprotein Fphi_0650 66 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 167626791 Common - 50S ribosomal protein L6 Fphi_0572 237 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 167627464 Common - acyl-CoA dehydrogenase Fphi_1238 150 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 167627611 Common - PEP-dependent sugar phosphotransferase system (PTS), enzyme IIA Fphi_1385 53 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 167627980 Common - hypothetical protein Fphi_1753 91 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 167627975 Common - mechanosensitive ion channel family protein Fphi_1749 85 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 167626393 Common - D-lactate dehydrogenase (cytochrome) Fphi_0171 199 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 167627317 Common - beta-ketoacyl-ACP synthase Fphi_1093 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 167628035 Common - short chain dehydrogenase Fphi_1807 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 167628136 Common - 3-dehydroquinate synthase Fphi_1911 203 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 167627233 Common - membrane fusion protein Fphi_1008 167 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 167628029 Common - biotin synthesis protein BioC Fphi_1801 17 None None None 167627245 Common - peptide chain release factor 3 Fphi_1020 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 167627155 Common - NADH dehydrogenase Fphi_0931 170 COG0852 NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit Energy production and conversion 167627266 Common - 50S ribosomal protein L1 Fphi_1043 236 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 167627785 Common - putative glutaredoxin 2 Fphi_1558 19 COG2999 GrxB, Glutaredoxin 2 Posttranslational modification, protein turnover, chaperones 167627225 Common - cytochrome bd-II terminal oxidase subunit I Fphi_1000 166 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 167626713 Common - septum formation inhibitor Fphi_0494 98 COG0850 MinC, Septum formation inhibitor Cell division and chromosome partitioning 167627583 Common - Phosphoglycerate kinase Fphi_1357 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 167627093 Common - Carboxypeptidase Taq Fphi_0869 83 COG2317 COG2317, Zn-dependent carboxypeptidase Amino acid transport and metabolism 167627738 Common - preprotein translocase family protein Fphi_1512 180 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 167627076 Common - integrase, catalytic region Fphi_0852 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627601 Pathogen - hypothetical protein Fphi_1375 1 None None None 167628102 Pathogen - hypothetical protein Fphi_1875 1 None None None 167626927 Common - preprotein translocase, subunit B Fphi_0705 107 COG1952 SecB, Preprotein translocase subunit SecB Intracellular trafficking and secretion 167627725 Common - integrase, catalytic region Fphi_1500 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627115 Common - tyrosine permease Fphi_0891 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 167627687 Common - metallo-beta-lactamase superfamily protein Fphi_1461 42 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 167627139 Common - glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Fphi_0915 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 167626377 Common - excinuclease ABC, subunit A Fphi_0155 245 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 167627565 Common - hypothetical protein Fphi_1339 4 COG3863 COG3863, Uncharacterized distant relative of cell wall-associated hydrolases Function unknown 167626998 Common - hypothetical protein Fphi_0775 20 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 167626570 Common - Small-conductance mechanosensitive channel-like protein Fphi_0352 181 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 167627930 Common - RNA polymerase sigma-70 factor Fphi_1704 218 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 167626521 Common - tRNA/rRNA methyltransferase Fphi_0304 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 167626802 Common - 30S ribosomal protein S19 Fphi_0582 247 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 167628033 Common - fucose: H+ symporter (FHS) family protein Fphi_1805 65 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 167626667 Common - Zn-dependent protease with chaperone function Fphi_0448 187 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 167626698 Common - DNA processing protein DprA Fphi_0479 211 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 167626942 Common - GTP-binding protein LepA Fphi_0720 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 167627513 Common - homoserine/threonine efflux family protein Fphi_1286 88 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 167627659 Common - prolipoprotein diacylglyceryl transferase Fphi_1433 209 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 167626398 Pathogen - hypothetical protein Fphi_0176 1 None None None 167627406 Common - capsule polysaccharide export protein KpsC Fphi_1180 30 COG3563 KpsC, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 167627937 Pathogen - hypothetical protein Fphi_1711 1 None None None 167627971 Common - ArsB arsenite/antimonite exporter Fphi_1745 6 None None None 167627604 Common - hypothetical protein Fphi_1378 14 None None None 167626543 Common - Glucose-1-phosphate adenylyltransferase Fphi_0326 178 COG0448 GlgC, ADP-glucose pyrophosphorylase Carbohydrate transport and metabolism 167626968 Common - allophanate hydrolase subunit 1 Fphi_0746 96 COG2049 DUR1, Allophanate hydrolase subunit 1 Amino acid transport and metabolism 167627255 Common - sugar transporter, MFS superfamily Fphi_1032 132 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 167627381 Pathogen - hypothetical protein Fphi_1156 1 None None None 167626603 Common - 2-octaprenylphenol hydroxylase Fphi_0384 184 COG0661 AarF, Predicted unusual protein kinase General function prediction only 167627270 Common - DNA-directed RNA polymerase, beta' subunit/160 kD subunit Fphi_1047 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 167628061 Common - Na+/H+ antiporter NhaA Fphi_1833 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 167627277 Common - tRNA (guanine-N(1)-)-methyltransferase Fphi_1054 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 167626745 Common - proline:Na+ symporter Fphi_0526 177 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 167627388 Common - UDP-N-acetylglucosamine 4,6-dehydratase Fphi_1163 137 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 167628120 Common - hypothetical protein Fphi_1895 9 None None None 167626446 Common - Uridine kinase Fphi_0229 90 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 167626924 Common - single-strand DNA binding protein Fphi_0702 202 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 167628068 Common - recombination associated protein Fphi_1839 53 COG2974 RdgC, DNA recombination-dependent growth factor C DNA replication, recombination, and repair 167626231 Pathogen - type IV pili, pilus assembly protein Fphi_0010 1 None None None 167627837 Common - ribosomal protein S21 Fphi_1612 79 None None None 167627212 Common - transcriptional regulator, LysR family Fphi_0988 5 COG0583 LysR, Transcriptional regulator Transcription 167626430 Common - formyltetrahydrofolate deformylase Fphi_0213 219 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 167626563 Common - hypothetical protein Fphi_0345 108 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 167626817 Common - protein chain elongation factor EF-Ts Fphi_0597 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 167627952 Common - sugar:cation symporter family protein Fphi_1726 29 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 167626903 Common - hypothetical protein Fphi_1913 3 COG1738 COG1738, Uncharacterized conserved protein Function unknown 167627621 Common - amidohydrolase Fphi_1395 75 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 167627331 Common - drug resistance transporter, Bcr/CflA family Fphi_1106 159 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626846 Common - hypothetical protein Fphi_0626 11 None None None 167627030 Common - Aspartate carbamoyltransferase Fphi_0807 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 167627157 Common - NADH dehydrogenase I, E subunit Fphi_0933 155 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 167627805 Common - 50S ribosomal protein L25 Fphi_1580 90 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 167627874 Common - hypothetical protein Fphi_1648 21 COG2267 PldB, Lysophospholipase Lipid metabolism 167626991 Common - 2-isopropylmalate synthase Fphi_0769 211 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 167626994 Common - 3-isopropylmalate dehydrogenase Fphi_0772 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 167627846 Pathogen - hypothetical protein Fphi_1621 1 None None None 167628090 Common - hypothetical protein Fphi_1863 100 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 167627774 Common - Dihydroxy-acid dehydratase Fphi_1547 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 167627194 Common - succinate dehydrogenase hydrophobic membrane anchor protein Fphi_0970 50 COG2142 SdhD, Succinate dehydrogenase, hydrophobic anchor subunit Energy production and conversion 167627667 Common - 5-formyltetrahydrofolate cycloligase Fphi_1441 69 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 167627706 Common - putative teichuronic acid biosynthesis glycosyl transferase Fphi_1480 214 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 167627209 Common - integrase, catalytic region Fphi_0984 62 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626882 Common - cell division protein FtsA Fphi_0661 176 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 167627788 Common - Alkaline phosphatase Fphi_1561 75 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 167627044 Common - hypothetical protein Fphi_0821 6 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 167626389 Common - hypothetical protein Fphi_0167 106 COG2860 COG2860, Predicted membrane protein Function unknown 167627907 Common - UvrD/REP superfamily I DNA and RNA helicase Fphi_1681 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 167627885 Common - Penicillin V acylase-like protein Fphi_1659 53 COG3049 COG3049, Penicillin V acylase and related amidases Cell envelope biogenesis, outer membrane 167627595 Pathogen - hypothetical protein Fphi_1369 1 None None None 167627863 Common - hypothetical protein Fphi_1638 81 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 167627525 Common - hypothetical protein Fphi_1299 74 COG2983 COG2983, Uncharacterized conserved protein Function unknown 167627586 Common - Alpha,alpha-trehalase Fphi_1360 30 COG1626 TreA, Neutral trehalase Carbohydrate transport and metabolism 167626511 Common - cell division protein FtsW Fphi_0294 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 167626327 Pathogen - hypothetical protein Fphi_0105 1 None None None 167626581 Common - 30S ribosomal protein S21 Fphi_0363 88 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 167626670 Common - tRNA nucleotidyltransferase Fphi_0451 187 COG0689 Rph, RNase PH Translation, ribosomal structure and biogenesis 167627850 Common - hypothetical protein Fphi_1625 6 None None None 167627349 Pathogen - hypothetical protein Fphi_1124 1 None None None 167626697 Common - integrase, catalytic region Fphi_0478 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627923 Common - putative ATPase of the PP-loop superfamily Fphi_1697 155 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 167627035 Common - hydrogenase maturation protein HypF Fphi_0812 111 COG0068 HypF, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 167628030 Common - Dethiobiotin synthase Fphi_1803 151 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 167627422 Common - conserved outer membrane protein of unknown function Fphi_1196 159 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 167626838 Pathogen - DNA polymerase III (CHI subunit) protein Fphi_0618 1 COG2927 HolC, DNA polymerase III, chi subunit DNA replication, recombination, and repair 167626492 Common - 3-dehydroquinate dehydratase Fphi_0275 169 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 167626320 Pathogen - hypothetical protein Fphi_0098 1 None None None 167627290 Common - serine permease Fphi_1066 34 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 167628010 Common - Alkaline phosphatase Fphi_1782 82 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 167627126 Common - 4'-phosphopantetheinyl transferase family protein Fphi_0902 37 COG2091 Sfp, Phosphopantetheinyl transferase Coenzyme metabolism 167626355 Common - hypothetical protein Fphi_0133 12 None None None 167627791 Common - hypothetical protein Fphi_1564 39 COG3155 ElbB, Uncharacterized protein involved in an early stage of isoprenoid biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 167626953 Common - methyltransferase GidB Fphi_0731 135 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 167627814 Common - potassium channel protein Fphi_1589 120 COG2898 COG2898, Uncharacterized conserved protein Function unknown 167628077 Common - Nicotinate-nucleotide diphosphorylase (carboxylating) Fphi_1848 204 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 167627638 Common - Alkaline phosphatase Fphi_1412 80 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 167627734 Pathogen - hypothetical protein Fphi_1508 3 None None None 167626833 Common - Phosphoenolpyruvate carboxylase Fphi_0613 116 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 167626863 Common - ABC transporter, ATP-binding protein Fphi_0643 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 167627146 Common - IucA/IucC Fphi_0922 61 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 167627182 Common - ATP synthase, F0 sector, subunit B Fphi_0958 135 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 167627451 Common - SAM-dependent methyltransferase Fphi_1225 12 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 167626382 Common - Malate dehydrogenase Fphi_0160 237 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 167626637 Common - Phosphoribosylaminoimidazolesuccinocarboxamide synthase, Phosphoribosylamine--glycine ligase Fphi_0418 234 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 167628015 Common - hydrolase, carbon-nitrogen family Fphi_1787 79 COG0388 COG0388, Predicted amidohydrolase General function prediction only 167626284 Common - imidazole glycerol phosphate synthase subunit HisF Fphi_0063 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 167626732 Common - acetyltransferase, GNAT family Fphi_0513 24 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 167626548 Common - hypothetical protein Fphi_0331 3 None None None 167627545 Common - hypothetical protein Fphi_1319 6 COG1403 McrA, Restriction endonuclease Defense mechanisms 167626518 Common - drug:H+ antiporter-1 (DHA1) family protein Fphi_0301 168 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167627900 Pathogen - BNR/Asp-box repeat domain Fphi_1674 1 None None None 167627828 Common - hypothetical protein Fphi_1603 19 None None None 167627692 Common - Arabinose-5-phosphate isomerase Fphi_1466 189 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 167627646 Common - Lysozyme Fphi_1420 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 167627134 Pathogen - hypothetical protein Fphi_0910 1 None None None 167627489 Common - hypothetical protein Fphi_1263 3 None None None 167627578 Common - fatty acid/phospholipid biosynthesis enzyme Fphi_1352 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 167626350 Common - 2', 3'-cyclic nucleotide 2'-phosphodiesterase Fphi_0128 116 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 167627431 Common - geranyltranstransferase Fphi_1205 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 167626380 Common - Glucose-6-phosphate isomerase Fphi_0158 195 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 167626535 Common - hypothetical protein Fphi_0318 39 COG1896 COG1896, Predicted hydrolases of HD superfamily General function prediction only 167626325 Common - pirin-related protein Fphi_0103 137 COG1741 COG1741, Pirin-related protein General function prediction only 167626782 Common - DNA-directed RNA polymerase, alpha subunit Fphi_0563 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 167627250 Common - peptide/opine/nickel uptake transporter (PepT) family protein Fphi_1025 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 167626283 Common - phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase Fphi_0062 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 167626330 Common - 50S ribosomal protein L35 Fphi_0108 7 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 167627894 Common - protein-disulfide isomerase Fphi_1668 54 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 167627480 Common - ABC-2 type transporter Fphi_1254 128 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 167627969 Common - hypothetical protein Fphi_1743 5 None None None 167626528 Common - Threonine synthase Fphi_0311 204 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 167627821 Common - oxidative stress transcriptional regulator Fphi_1596 190 COG0583 LysR, Transcriptional regulator Transcription 167626335 Common - glycine cleavage system protein H Fphi_0113 187 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 167627057 Common - aminopeptidase N Fphi_0833 160 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 167626271 Common - Gamma-glutamyltransferase Fphi_0050 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 167627002 Common - dihydroorotate oxidase Fphi_0780 2 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 167626586 Pathogen - hypothetical protein Fphi_0368 1 None None None 167627670 Common - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase Fphi_1444 139 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 167627344 Pathogen - hypothetical protein Fphi_1119 1 None None None 167627009 Common - membrane fusion protein, HlyD family Fphi_0787 130 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 167627172 Common - translation initiation factor IF-2 Fphi_0948 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 167627089 Common - chaperone ClpB Fphi_0865 216 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 167626349 Common - hypothetical protein Fphi_0127 141 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 167627165 Common - NADH dehydrogenase (quinone) Fphi_0941 210 COG1008 NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) Energy production and conversion 167627148 Common - IucA/IucC Fphi_0924 44 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 167627305 Common - putative acyltransferase Fphi_1081 41 COG4261 COG4261, Predicted acyltransferase General function prediction only 167627117 Common - amino acid-polyamine-organocation (APC) superfamily protein Fphi_0893 50 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 167627364 Pathogen - hypothetical protein Fphi_1139 1 None None None 167626306 Common - integrase, catalytic region Fphi_0085 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627486 Common - DegT/DnrJ/EryC1/StrS aminotransferase Fphi_1260 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 167628003 Common - hypothetical protein Fphi_1775 23 COG3608 COG3608, Predicted deacylase General function prediction only 167627548 Pathogen - hypothetical protein Fphi_1322 1 None None None 167627915 Common - type IV pili, pilus assembly protein Fphi_1689 28 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 167626765 Common - hypothetical protein Fphi_0546 209 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 167627246 Pathogen - type IV pili, pilus assembly protein Fphi_1021 1 None None None 167626342 Common - outer membrane associated protein Fphi_0120 54 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 167627359 Common - tRNA adenylyltransferase Fphi_1134 215 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 167626260 Common - Glutamine--fructose-6-phosphate transaminase (isomerizing) Fphi_0039 234 COG2222 AgaS, Predicted phosphosugar isomerases Cell envelope biogenesis, outer membrane 167627641 Pathogen - hypothetical protein Fphi_1414 1 None None None 167626469 Common - hypothetical protein Fphi_0252 64 COG3791 COG3791, Uncharacterized conserved protein Function unknown 167627760 Common - ATP-dependent Clp protease subunit X Fphi_1533 220 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 167627150 Common - diaminobutyrate--2-oxoglutarate transaminase Fphi_0926 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 167627618 Pathogen - hypothetical protein Fphi_1393 1 None None None 167626357 Common - hypothetical protein Fphi_0136 39 COG2899 COG2899, Uncharacterized protein conserved in bacteria Function unknown 167627593 Pathogen - intracellular growth locus protein D Fphi_1367 1 None None None 167626814 Common - Di-trans,poly-cis-decaprenylcistransferase Fphi_0594 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 167626454 Common - AMP-binding protein Fphi_0237 219 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 167626479 Common - hypothetical protein Fphi_0262 3 COG4731 COG4731, Uncharacterized protein conserved in bacteria Function unknown 167627977 Pathogen - lipoprotein, putative Fphi_1919 1 None None None 167626658 Common - Methylated-DNA--(protein)-cysteine S-methyltransferase Fphi_0439 225 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 167626304 Common - major facilitator superfamily (MFS) transport protein Fphi_0083 163 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 167626729 Common - Alanine racemase Fphi_0510 178 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 167627534 Common - hypothetical protein Fphi_1308 103 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 167626827 Common - L-lactate dehydrogenase Fphi_0607 110 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 167626470 Common - Alkaline phosphatase Fphi_0253 82 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 167627665 Common - DedA family protein Fphi_1439 162 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 167627783 Common - DNA-(apurinic or apyrimidinic site) lyase Fphi_1556 238 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 167626445 Common - DNA-directed RNA polymerase, subunit K/omega Fphi_0228 107 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 167626424 Common - metabolite:H+ symporter (MHS) family protein Fphi_0204 124 None None None 167627080 Common - Rieske (2Fe-2S) domain protein Fphi_0855 87 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 167628084 Common - galactokinase Fphi_1857 86 COG0153 GalK, Galactokinase Carbohydrate transport and metabolism 167627268 Common - 50S ribosomal protein L7/L12 Fphi_1045 211 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 167627743 Common - 3-phosphoshikimate 1-carboxyvinyltransferase Fphi_1517 230 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 167627063 Common - Anthranilate synthase Fphi_0839 220 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 167626258 Common - Beta-N-acetylhexosaminidase Fphi_0037 48 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 167627776 Common - acetolactate synthase small subunit Fphi_1549 19 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 167627602 Pathogen - hypothetical protein Fphi_1376 2 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 167627767 Common - oxidoreductase Fphi_1540 15 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 167627532 Common - integrase, catalytic region Fphi_1306 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627078 Common - Rieske (2Fe-2S) domain protein Fphi_0854 6 None None None 167627987 Pathogen - lipoprotein, putative Fphi_1760 3 None None None 167627683 Common - S-adenosylmethionine (SAM)-dependent methyltransferase Fphi_1457 151 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 167628056 Common - hypothetical protein Fphi_1828 16 None None None 167626966 Common - allophanate hydrolase subunit 2 Fphi_0744 95 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 167628066 Common - hypothetical protein Fphi_1837 15 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 167626895 Common - ABC-type anion transport system, duplicated permease component Fphi_0674 76 COG4986 COG4986, ABC-type anion transport system, duplicated permease component Inorganic ion transport and metabolism 167627315 Common - putative beta-hydroxydecanoyl-ACP dehydrase Fphi_1091 21 COG4706 COG4706, Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase Lipid metabolism 167626251 Common - Beta-lactamase Fphi_0031 65 COG2367 PenP, Beta-lactamase class A Defense mechanisms 167626860 Common - outer membrane protein Fphi_0640 2 COG3133 SlyB, Outer membrane lipoprotein Cell envelope biogenesis, outer membrane 167626734 Common - modification methylase, HemK family Fphi_0515 221 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 167626294 Pathogen - hypothetical protein Fphi_0072 1 None None None 167626779 Common - chaperone HSP90, heat shock protein HtpG Fphi_0560 150 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 167626406 Pathogen - hypothetical protein Fphi_1922 1 None None None 167626929 Common - conserved outer membrane protein of unknown function Fphi_0707 4 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 167627261 Common - DNA helicase Fphi_1038 127 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 167627223 Common - hypothetical protein Fphi_0998 3 None None None 167626269 Common - GTP binding translational elongation factor Tu and G family protein Fphi_0048 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 167626508 Common - dolichyl-phosphate-mannose-protein mannosyltransferase family protein Fphi_0291 102 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 167626437 Common - cell division protein, septum formation initiator Fphi_0220 9 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 167628020 Common - chorismate binding family protein Fphi_1792 222 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 167626691 Pathogen - hypothetical protein Fphi_0472 1 None None None 167626363 Common - ATP-binding cassette putrescine uptake system, ATP-binding protein Fphi_0141 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 167627944 Common - 1-deoxyxylulose-5-phosphate synthase Fphi_1718 219 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 167626655 Common - Chorismate synthase Fphi_0436 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 167626989 Common - Pyruvate, phosphate dikinase Fphi_0767 232 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 167627185 Common - H(+)-transporting two-sector ATPase Fphi_0961 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 167628109 Common - hypothetical protein Fphi_1882 2 None None None 167627101 Common - Aspartate kinase Fphi_0877 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 167626687 Common - group A colicin translocation; TolB protein Fphi_0468 144 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 167626501 Common - Porphobilinogen synthase Fphi_0284 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 167627961 Common - cardiolipin synthetase Fphi_1735 153 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 167626313 Common - Glutamate racemase Fphi_0091 189 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 167626722 Common - VacJ like lipoprotein Fphi_0503 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 167626980 Common - ribonuclease P protein component Fphi_0758 11 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 167627091 Common - Tryptophan synthase Fphi_0866 215 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 167627710 Common - asparaginase Fphi_1484 84 COG1446 COG1446, Asparaginase Amino acid transport and metabolism 167626594 Common - Methionine--tRNA ligase Fphi_0376 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 167627059 Common - hypothetical protein Fphi_0835 16 COG3708 COG3708, Uncharacterized protein conserved in bacteria Function unknown 167628118 Pathogen - hypothetical protein Fphi_1893 1 None None None 167626632 Common - Oligopeptidase A Fphi_0413 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 167627202 Common - preprotein translocase, subunit G, membrane protein Fphi_0978 55 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 167626748 Common - lysine:H+ symporter Fphi_0529 164 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 167627322 Common - hypothetical protein Fphi_1097 41 COG4125 COG4125, Predicted membrane protein Function unknown 167627711 Common - major facilitator superfamily (MFS) transport protein Fphi_1485 149 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167628012 Common - GTP cyclohydrolase I Fphi_1784 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 167626419 Common - glycerol-3-phosphate transporter Fphi_0200 73 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 167626932 Common - ferredoxin Fphi_0710 67 COG3411 COG3411, Ferredoxin Energy production and conversion 167626759 Pathogen - hypothetical protein Fphi_0540 1 None None None 167626238 Common - glycoprotease family protein Fphi_0017 161 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 167626534 Pathogen - hypothetical protein Fphi_0317 1 None None None 167627838 Common - DNA-directed DNA polymerase Fphi_1613 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 167627103 Common - dihydrodipicolinate synthase Fphi_0879 232 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 167627697 Common - Asparagine synthase (glutamine-hydrolyzing) Fphi_1471 150 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 167627865 Common - hypothetical protein Fphi_1641 110 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 167626516 Common - Alkaline phosphatase Fphi_0299 79 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 167626311 Common - thiamine biosynthesis protein ThiO Fphi_0089 45 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 167627694 Common - sugar transferase involved in lipopolysaccharide synthesis Fphi_1468 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 167627931 Pathogen - hypothetical protein Fphi_1705 1 None None None 167627183 Common - ATP synthase, F1 sector, subunit delta Fphi_0959 168 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 167626616 Common - lipoprotein signal peptidase II Fphi_0398 185 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 167627192 Common - Citrate (Si)-synthase Fphi_0968 194 COG0372 GltA, Citrate synthase Energy production and conversion 167627584 Common - Pyruvate kinase Fphi_1358 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 167627924 Common - thioesterase family protein Fphi_1698 76 COG0824 FcbC, Predicted thioesterase General function prediction only 167627329 Pathogen - hypothetical protein Fphi_1104 1 None None None 167626880 Common - UDP-3-0-acyl N-acetylglucosamine deacetylase Fphi_0658 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 167627700 Common - glycosyl transferase, family 2 Fphi_1474 217 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 167627065 Common - ribonuclease G Fphi_0841 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 167627925 Common - hypothetical protein Fphi_1699 38 COG4764 COG4764, Uncharacterized protein conserved in bacteria Function unknown 167628039 Common - 4-amino-4-deoxy-L-arabinose transferase-like protein Fphi_1811 83 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 167626326 Common - Threonine aldolase Fphi_0104 92 COG2008 GLY1, Threonine aldolase Amino acid transport and metabolism 167626252 Common - DNA/RNA endonuclease G Fphi_0030 45 COG1864 NUC1, DNA/RNA endonuclease G, NUC1 Nucleotide transport and metabolism 167627813 Common - soluble pyridine nucleotide transhydrogenase Fphi_1588 241 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 167627042 Common - hypothetical protein Fphi_0819 71 COG3259 FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit Energy production and conversion 167627457 Common - hypothetical protein Fphi_1231 115 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 167627560 Common - Aspartate 1-decarboxylase Fphi_1334 130 COG0853 PanD, Aspartate 1-decarboxylase Coenzyme metabolism 167626676 Common - hypothetical protein Fphi_0457 117 COG0730 COG0730, Predicted permeases General function prediction only 167628094 Common - drug:H+ antiporter-1 (DHA1) family protein Fphi_1868 140 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167627547 Common - prophage repressor protein Fphi_1321 17 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 167627370 Common - hypothetical protein Fphi_1145 92 COG1565 COG1565, Uncharacterized conserved protein Function unknown 167627650 Common - Glycine hydroxymethyltransferase Fphi_1424 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 167626785 Common - 30S ribosomal protein S13 Fphi_0566 243 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 167626568 Common - Small-conductance mechanosensitive channel-like protein Fphi_0350 138 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 167627994 Common - hypothetical protein Fphi_1767 49 COG2431 COG2431, Predicted membrane protein Function unknown 167627377 Common - Phosphoglycerol transferase-like protein Fphi_1152 35 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 167626444 Pathogen - hypothetical protein Fphi_0227 1 None None None 167627574 Common - acyl carrier protein Fphi_1348 211 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 167626813 Common - phosphatidate cytidylyltransferase Fphi_0593 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 167628041 Common - Glutathione synthase Fphi_1813 120 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 167626410 Common - C4-dicarboxylate transport protein Fphi_0191 159 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 167627909 Common - peroxiredoxin, putative Fphi_1683 201 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 167626836 Pathogen - hypothetical protein Fphi_0616 1 None None None 167627649 Pathogen - hypothetical protein Fphi_1423 1 None None None 167626750 Common - putative cell division protein with DNA segregation ATPase, FtsK/SpoIIIE domain Fphi_0531 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 167627366 Pathogen - hypothetical protein Fphi_1141 1 None None None 167627284 Common - non-ribosomal peptide synthetase/alpha-aminoadipate reductase-like protein Fphi_1060 236 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 167627999 Common - 3-deoxy-7-phosphoheptulonate synthase Fphi_1771 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 167627803 Common - hypothetical protein Fphi_1578 50 COG3608 COG3608, Predicted deacylase General function prediction only 167628129 Common - P-pantothenate cysteine ligase/P-pantothenoylcysteine decarboxylase Fphi_1904 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 167626992 Common - 3-isopropylmalate dehydratase Fphi_0770 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 167626831 Common - hypothetical protein Fphi_0611 27 None None None 167627882 Pathogen - hypothetical protein Fphi_1656 1 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 167626820 Common - cysteine synthase A Fphi_0599 219 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 167626247 Common - transporter-associated protein, HlyC/CorC family Fphi_0026 218 COG4535 CorC, Putative Mg2+ and Co2+ transporter CorC Inorganic ion transport and metabolism 167627831 Common - putative transcriptional regulator, IclR family Fphi_1606 101 COG1414 IclR, Transcriptional regulator Transcription 167626565 Pathogen - hypothetical protein Fphi_0347 1 None None None 167626894 Common - acetyltransferase GNAT family protein Fphi_0673 99 COG0456 RimI, Acetyltransferases General function prediction only 167627902 Common - hypothetical protein Fphi_1676 63 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 167626790 Common - 50S ribosomal protein L18 Fphi_0571 215 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 167626452 Pathogen - hypothetical protein Fphi_0235 1 COG3116 FtsL, Cell division protein Cell division and chromosome partitioning 167627474 Common - hypothetical protein Fphi_1248 15 None None None 167626635 Common - Phosphoribosylaminoimidazole carboxylase Fphi_0416 233 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 167627848 Common - hypothetical protein Fphi_1622 38 COG4764 COG4764, Uncharacterized protein conserved in bacteria Function unknown 167628050 Pathogen - hypothetical protein Fphi_1822 1 None None None 167627520 Common - rhodanese-related sulfurtransferase Fphi_1294 49 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 167626606 Common - hypothetical protein Fphi_0387 22 None None None 167626955 Common - hypothetical protein Fphi_0732 15 COG3619 COG3619, Predicted membrane protein Function unknown 167627857 Common - DNA-directed DNA polymerase Fphi_1632 171 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 167627023 Pathogen - hypothetical protein Fphi_0800 1 None None None 167626865 Common - dienelactone hydrolase family protein Fphi_0645 73 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 167627443 Common - hypothetical protein Fphi_1217 17 None None None 167626229 Pathogen - type IV pili glycosylation protein Fphi_0008 1 COG3167 PilO, Tfp pilus assembly protein PilO Cell motility and secretion / Intracellular trafficking and secretion 167626552 Pathogen - hypothetical protein Fphi_1921 1 None None None 167627034 Common - bacterioferritin comigratory protein Fphi_0811 211 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 167626681 Common - Deoxyribodipyrimidine photo-lyase Fphi_0462 132 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 167626971 Common - DNA/RNA helicase Fphi_0749 174 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 167627688 Common - hypothetical protein Fphi_1462 2 None None None 167626829 Common - Glutamate 5-kinase Fphi_0609 189 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 167627508 Pathogen - hypothetical protein Fphi_1282 1 None None None 167627054 Common - hypothetical protein Fphi_0831 6 COG2929 COG2929, Uncharacterized protein conserved in bacteria Function unknown 167626905 Common - short chain dehydrogenase Fphi_0683 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 167627221 Common - type IV pili nucleotide-binding protein Fphi_0996 218 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 167626914 Common - Carboxylesterase Fphi_0692 92 COG0400 COG0400, Predicted esterase General function prediction only 167627957 Common - regulatory protein Fphi_1731 100 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 167627412 Common - Dihydrolipoyllysine-residue succinyltransferase Fphi_1186 198 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 167627408 Common - capsule polysaccharide export protein Fphi_1182 30 COG3563 KpsC, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 167626465 Pathogen - hypothetical protein Fphi_0248 2 None None None 167627275 Common - 30S ribosomal protein S16 Fphi_1052 213 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 167627186 Common - ATP synthase F1, beta subunit Fphi_0962 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 167627597 Pathogen - hypothetical protein Fphi_1371 1 None None None 167627607 Common - transcriptional regulator, LysR family protein Fphi_1381 150 COG0583 LysR, Transcriptional regulator Transcription 167627518 Common - hypothetical protein Fphi_1292 32 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167627527 Common - hypothetical protein Fphi_1301 2 None None None 167626371 Common - preprotein translocase, subunit A (ATPase, RNA helicase) Fphi_0149 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 167627676 Common - haloacid dehalogenase-like hydrolase Fphi_1450 96 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 167627047 Common - metabolite:H+ symporter (MHS) family protein Fphi_0824 130 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626775 Common - N-acetyl-gamma-glutamyl-phosphate reductase Fphi_0556 194 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 167626547 Common - shikimate 5-dehydrogenase Fphi_0330 125 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 167626944 Common - hypothetical protein Fphi_0722 3 COG3232 HpaF, 5-carboxymethyl-2-hydroxymuconate isomerase Amino acid transport and metabolism 167626669 Pathogen - hypothetical protein Fphi_0450 1 None None None 167626585 Common - bifunctional NMN adenylyltransferase/NUDIX hydrolase Fphi_0367 107 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 167627333 Common - hypothetical protein Fphi_1108 16 COG3786 COG3786, Uncharacterized protein conserved in bacteria Function unknown 167628008 Common - glutathione-disulfide reductase Fphi_1780 238 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 167626770 Common - C4-dicarboxylate anaerobic carrier Fphi_0551 43 COG1288 COG1288, Predicted membrane protein Function unknown 167627257 Common - glycerol-3-phosphate dehydrogenase Fphi_1034 147 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 167628053 Common - hypothetical protein Fphi_1825 5 None None None 167626573 Common - soluble lytic murein transglycosylase Fphi_0355 157 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 167626844 Common - conserved hypothetical membrane protein with von Willebrand factor type A domain Fphi_0624 65 None None None 167626425 Pathogen - hypothetical protein Fphi_0206 1 COG3232 HpaF, 5-carboxymethyl-2-hydroxymuconate isomerase Amino acid transport and metabolism 167627775 Common - acetolactate synthase large subunit Fphi_1548 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 167627551 Common - hypothetical protein Fphi_1325 4 COG2850 COG2850, Uncharacterized conserved protein Function unknown 167626876 Common - lysyl-tRNA synthetase Fphi_0655 249 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 167627554 Common - choloylglycine hydrolase family protein Fphi_1328 53 COG3049 COG3049, Penicillin V acylase and related amidases Cell envelope biogenesis, outer membrane 167626541 Common - integrase, catalytic region Fphi_0324 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627540 Common - hypothetical protein Fphi_1314 7 None None None 167627135 Common - Adenylosuccinate lyase Fphi_0911 239 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 167626797 Common - 30S ribosomal protein S17 Fphi_0578 225 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 167628122 Common - ribosomal protein L11 methyltransferase Fphi_1897 178 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 167626851 Common - hypothetical protein Fphi_0631 3 COG1244 COG1244, Predicted Fe-S oxidoreductase General function prediction only 167626858 Common - tRNA processing ribonuclease BN Fphi_0638 95 COG1295 Rbn, Predicted membrane protein Function unknown 167626800 Common - 30S ribosomal protein S3 Fphi_0580 247 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 167627330 Common - hypothetical protein Fphi_1105 135 COG2081 COG2081, Predicted flavoproteins General function prediction only 167627128 Common - amidophosphoribosyltransferase Fphi_0904 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 167626716 Common - ABC transporter, ATP-binding protein Fphi_0497 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 167627910 Common - 30S ribosomal protein S6 Fphi_1684 192 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 167627721 Common - Mur ligase family protein Fphi_1495 145 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 167628006 Common - kinase-like protein Fphi_1778 12 COG0645 COG0645, Predicted kinase General function prediction only 167626500 Common - RNA methyltransferase, SpoU family Fphi_0283 157 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 167626727 Common - hypothetical protein Fphi_0508 9 None None None 167626647 Common - mannose-6-phosphate isomerase Fphi_0428 124 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 167626596 Common - hypothetical protein Fphi_0378 133 COG1739 COG1739, Uncharacterized conserved protein Function unknown 167626960 Common - hypothetical protein Fphi_0738 11 COG1392 COG1392, Phosphate transport regulator (distant homolog of PhoU) Inorganic ion transport and metabolism 167627752 Common - type I restriction-modification system, subunit S Fphi_1525 115 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 167626296 Pathogen - hypothetical protein Fphi_0075 1 None None None 167626412 Common - endoribonuclease L-PSP, putative Fphi_0193 192 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 167626591 Common - metallopeptidase, M50B family Fphi_0373 43 None None None 167627740 Common - preprotein translocase, subunit F, membrane protein Fphi_1514 217 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 167627133 Pathogen - hypothetical protein Fphi_0909 1 None None None 167627303 Common - hypothetical protein Fphi_1079 21 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 167627152 Common - ferric uptake regulation protein Fphi_0928 198 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 167626657 Pathogen - hypothetical protein Fphi_0438 1 None None None 167626910 Pathogen - hypothetical protein Fphi_0688 1 COG5038 COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain General function prediction only 167627511 Common - glycosyl transferase Fphi_1285 167 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 167627567 Common - tRNA and rRNA cytosine-C5-methylase, sun protein Fphi_1340 206 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 167628089 Common - hypothetical protein Fphi_1862 98 COG2835 COG2835, Uncharacterized conserved protein Function unknown 167627780 Common - integrase, catalytic region Fphi_1553 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626273 Common - conserved hypothetical lipoprotein Fphi_0052 57 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 167626352 Common - amino acid-polyamine-organocation (APC) superfamily protein Fphi_0130 171 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 167626986 Common - elongation factor P Fphi_0764 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 167627445 Common - hypothetical protein Fphi_1219 61 COG3496 COG3496, Uncharacterized conserved protein Function unknown 167626720 Pathogen - hypothetical protein Fphi_0501 1 COG3113 COG3113, Predicted NTP binding protein (contains STAS domain) General function prediction only 167627099 Common - Mg-dependent DNase Fphi_0875 203 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 167628111 Pathogen - hypothetical protein Fphi_1883 1 None None None 167626896 Common - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Fphi_0676 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 167627468 Common - HrpA-like helicase Fphi_1242 133 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 167627951 Pathogen - hypothetical protein Fphi_1725 1 None None None 167626710 Pathogen - hypothetical protein Fphi_0491 1 None None None 167627479 Common - dTDP-glucose 4,6-dehydratase Fphi_1253 231 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 167626795 Common - 50S ribosomal protein L24 Fphi_0576 209 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 167626987 Common - oligoribonuclease (3'->5' exoribonuclease) Fphi_0765 88 COG1949 Orn, Oligoribonuclease (3'->5' exoribonuclease) RNA processing and modification 167627262 Common - elongation factor Tu Fphi_1039 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 167627387 Common - hypothetical protein Fphi_1162 2 COG3563 KpsC, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 167627312 Common - putative phospholipid biosynthesis acyltransferase Fphi_1088 51 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 167628132 Common - bifunctional proline dehydrogenase, pyrroline-5-carboxylate dehydrogenase Fphi_1907 220 COG4230 COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase Energy production and conversion 167626678 Common - bile acid symporter family protein Fphi_0459 61 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 167627314 Common - 3-oxoacyl-(acyl carrier protein) synthase Fphi_1090 209 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 167627727 Common - methionine uptake transporter (MUT) family protein, membrane and periplasmic protein Fphi_1501 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 167627004 Common - hypothetical protein Fphi_0782 89 COG4196 COG4196, Uncharacterized protein conserved in bacteria Function unknown 167626378 Common - GreA/GreB family elongation factor Fphi_0156 204 COG0782 GreA, Transcription elongation factor Transcription 167628106 Common - UTP--glucose-1-phosphate uridylyltransferase Fphi_1879 234 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 167627823 Common - pyruvate decarboxylase Fphi_1598 220 COG3961 COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only 167626366 Common - putative threonine efflux protein Fphi_0144 99 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 167628083 Common - UDP-glucose--hexose-1-phosphate uridylyltransferase Fphi_1856 79 COG1085 GalT, Galactose-1-phosphate uridylyltransferase Energy production and conversion 167626780 Common - ion transport protein Fphi_0561 110 None None None 167627098 Common - nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein Fphi_0874 57 COG3201 PnuC, Nicotinamide mononucleotide transporter Coenzyme metabolism 167627238 Common - DNA polymerase I Fphi_1013 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 167627229 Common - hypothetical protein Fphi_1004 3 COG2232 COG2232, Predicted ATP-dependent carboligase related to biotin carboxylase General function prediction only 167626777 Common - acetylglutamate kinase Fphi_0558 218 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 167627082 Common - endonuclease/exonuclease/phosphatase family Fphi_0858 32 COG3021 COG3021, Uncharacterized protein conserved in bacteria Function unknown 167627892 Common - peptide methionine sulfoxide reductase Fphi_1666 206 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 167627073 Common - hydrogenase nickel insertion protein HypA Fphi_0849 74 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 167627501 Pathogen - hypothetical protein Fphi_1275 1 None None None 167626916 Common - glycosyltransferase sugar-binding region containing DXD motif Fphi_0694 9 COG3774 OCH1, Mannosyltransferase OCH1 and related enzymes Cell envelope biogenesis, outer membrane 167626609 Common - UDP-N-acetylglucosamine 1-carboxyvinyltransferase Fphi_0390 208 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 167627852 Common - peroxiredoxin of the AhpC/TSA family Fphi_1627 217 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 167626717 Common - ABC-type transport system permease protein Fphi_0498 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 167627494 Common - glycosyl transferase, group 1 Fphi_1268 103 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 167627620 Common - integrase, catalytic region Fphi_1394 14 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626525 Common - UDP-2,3-diacylglucosamine hydrolase Fphi_0308 81 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 167626671 Common - chorismate lyase Fphi_0452 2 COG3161 UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) Coenzyme metabolism 167628079 Common - Guanylate kinase Fphi_1850 212 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 167627759 Common - Endopeptidase Clp Fphi_1532 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 167627159 Common - NADH-quinone oxidoreductase, chain G Fphi_0935 195 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 167626333 Common - chitin-binding protein Fphi_0111 30 COG3397 COG3397, Uncharacterized protein conserved in bacteria Function unknown 167627391 Common - general stress protein 14 (GSP14) Fphi_1166 55 COG2089 SpsE, Sialic acid synthase Cell envelope biogenesis, outer membrane 167627845 Common - malate dehydrogenase Fphi_1620 194 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 167626705 Common - MutT/NUDIX family protein Fphi_0486 50 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 167627380 Common - KpsD protein Fphi_1155 58 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 167626308 Common - thiamine-phosphate pyrophosphorylase/thiamine-phosphate pyrophosphorylase Fphi_0087 225 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 167627201 Common - Triose-phosphate isomerase Fphi_0977 217 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 167627111 Common - Potassium-transporting ATPase Fphi_0887 94 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 167626484 Common - PerM family protein Fphi_0267 122 COG0628 PerM, Predicted permease General function prediction only 167627942 Common - tRNA-pseudouridine synthase I Fphi_1716 236 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 167627483 Common - hypothetical protein Fphi_1257 62 COG1043 LpxA, Acyl- acyl carrier protein 167626625 Common - DNA topoisomerase Fphi_0406 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 167627298 Common - hypothetical protein Fphi_1073 166 COG1576 COG1576, Uncharacterized conserved protein Function unknown 167627624 Common - 30S ribosomoal protein S9 Fphi_1398 225 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 167627549 Common - drug/metabolite exporter Fphi_1323 58 COG2962 RarD, Predicted permeases General function prediction only 167626767 Common - acetyl-CoA carboxylase, carboxytransferase subunit beta Fphi_0548 219 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 167627379 Common - capsule polysaccharide biosynthesis protein Fphi_1154 30 COG3562 KpsS, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 167627529 Common - carbon-nitrogen hydrolase Fphi_1302 189 COG0388 COG0388, Predicted amidohydrolase General function prediction only 167627353 Pathogen - hypothetical protein Fphi_1128 1 None None None 167627327 Common - serine protease, subtilase family Fphi_1102 100 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 167626477 Common - major facilitator superfamily (MFS) transport protein Fphi_0260 113 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167627145 Pathogen - hypothetical protein Fphi_0921 1 None None None 167627248 Common - DNA helicase II Fphi_1023 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 167627499 Common - Guanosine-5'-triphosphate,3'-diphosphate diphosphatase Fphi_1273 179 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 167626708 Common - fumarate hydratase, class I Fphi_0489 146 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 167626726 Pathogen - hypothetical protein Fphi_0507 1 None None None 167626493 Common - Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) Fphi_0276 103 COG0639 ApaH, Diadenosine tetraphosphatase and related serine/threonine protein phosphatases Signal transduction mechanisms 167627745 Common - Ribonuclease H Fphi_1519 178 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 167626434 Common - L-threonine 3-dehydrogenase Fphi_0217 209 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 167626274 Common - transposase Fphi_0053 15 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 167627346 Pathogen - hypothetical protein Fphi_1122 1 None None None 167627421 Common - 1-deoxy-D-xylulose-5-phosphate reductoisomerase Fphi_1195 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 167626947 Common - phosphoheptose isomerase Fphi_0725 123 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 167627537 Common - disulfide bond formation protein, DsbB family Fphi_1311 16 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 167626874 Common - hypothetical protein Fphi_0654 53 COG2862 COG2862, Predicted membrane protein Function unknown 167627430 Common - (CDP-alcohol) phosphatidyltransferase Fphi_1204 25 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 167627410 Pathogen - hypothetical protein Fphi_1183 1 None None None 167627634 Common - membrane fusion protein Fphi_1408 164 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 167627876 Pathogen - hypothetical protein Fphi_1650 2 None None None 167626324 Common - Ribose-5-phosphate isomerase Fphi_0102 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 167627612 Common - rRNA methylase, SpoU family Fphi_1386 155 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 167627199 Common - Adenine phosphoribosyltransferase Fphi_0975 177 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 167626299 Common - transglutaminase-like superfamily protein Fphi_0078 132 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 167626233 Common - D-lactate dehydrogenase (cytochrome) Fphi_0012 199 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 167627778 Common - transcription-repair coupling factor Fphi_1551 231 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 167627208 Pathogen - hypothetical protein Fphi_0983 1 None None None 167627666 Common - hypothetical protein Fphi_1440 3 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 167626466 Common - putative cytochrome P450 Fphi_0249 73 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 167627012 Common - GDSL-like lipolytic enzyme Fphi_0790 23 COG3240 COG3240, Phospholipase/lecithinase/hemolysin Lipid metabolism / General function prediction only 167627372 Common - 8-amino-7-oxononanoate synthase Fphi_1147 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 167626381 Common - thiamine pyrophosphokinase Fphi_0159 16 COG1564 THI80, Thiamine pyrophosphokinase Coenzyme metabolism 167627190 Common - Superoxide dismutase Fphi_0966 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 167627174 Common - Histidine--tRNA ligase Fphi_0950 247 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 167626344 Common - Pantetheine-phosphate adenylyltransferase Fphi_0122 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 167627917 Pathogen - hypothetical protein Fphi_1691 1 None None None 167626967 Common - lactam utilization protein Fphi_0745 99 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 167627766 Common - protease, GTP-binding subunit Fphi_1539 221 COG2262 HflX, GTPases General function prediction only 167627867 Common - peroxiredoxin, AhpC-TSA family protein Fphi_1918 81 COG0678 AHP1, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 167626537 Common - Glycine--tRNA ligase Fphi_0320 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 167627985 Common - hypothetical protein Fphi_1757 3 None None None 167628046 Common - ArsB arsenite/antimonite exporter Fphi_1818 130 COG0798 ACR3, Arsenite efflux pump ACR3 and related permeases Inorganic ion transport and metabolism 167626614 Common - riboflavin kinase/FMN adenylyltransferase Fphi_0395 211 COG0196 RibF, FAD synthase Coenzyme metabolism 167627439 Common - Exoribonuclease II Fphi_1213 192 COG0557 VacB, Exoribonuclease R Transcription 167627040 Common - hydrogenase/sulfur reductase gamma subunit Fphi_0817 102 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 167628071 Common - Coproporphyrinogen oxidase Fphi_1842 113 COG0408 HemF, Coproporphyrinogen III oxidase Coenzyme metabolism 167627811 Common - hypothetical protein Fphi_1586 19 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 167627702 Common - glycosyl transferase Fphi_1476 183 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 167626740 Pathogen - pilus assembly protein Fphi_0521 1 None None None 167627188 Common - hypothetical protein Fphi_0964 11 COG3469 COG3469, Chitinase Carbohydrate transport and metabolism 167626428 Common - glycosyl hydrolase, family 18 protein Fphi_0209 20 COG3325 ChiA, Chitinase Carbohydrate transport and metabolism 167628073 Common - Cytidylate kinase Fphi_1845 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 167626290 Common - ATP phosphoribosyltransferase Fphi_0069 205 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 167626674 Common - hypothetical protein Fphi_0455 65 COG2363 COG2363, Uncharacterized small membrane protein Function unknown 167628092 Common - excinuclease ABC, C subunit Fphi_1865 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 167626417 Common - hypothetical protein Fphi_0198 108 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 167627731 Common - transcriptional regulator, LysR family Fphi_1505 143 COG0583 LysR, Transcriptional regulator Transcription 167627375 Common - putative cytochrome P450 Fphi_1150 76 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 167627083 Common - acyltransferase Fphi_0859 157 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 167626558 Common - glycine cleavage system T protein Fphi_0340 179 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 167627927 Common - 30S ribosomal protein S21 Fphi_1701 94 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 167628037 Common - flavohemoprotein Fphi_1809 152 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 167627652 Pathogen - hypothetical protein Fphi_1426 2 None None None 167627582 Common - Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) Fphi_1356 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 167627293 Common - hypothetical protein Fphi_1069 113 COG1520 COG1520, FOG: WD40-like repeat Function unknown 167626834 Common - mobilization/cell filamentation protein-like protein Fphi_0614 35 COG2184 Fic, Protein involved in cell division Cell division and chromosome partitioning 167627320 Common - ferrous iron transport protein B Fphi_1096 173 COG0370 FeoB, Fe2+ transport system protein B Inorganic ion transport and metabolism 167628116 Common - integrase, catalytic region Fphi_1890 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627825 Common - hypothetical protein Fphi_1600 3 None None None 167628019 Common - para-aminobenzoate synthase component II Fphi_1791 238 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 167626463 Common - Succinate--CoA ligase (ADP-forming) Fphi_0246 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 167627880 Common - hypothetical protein Fphi_1654 85 COG1518 COG1518, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 167626481 Common - GTPase Fphi_0264 163 COG1162 COG1162, Predicted GTPases General function prediction only 167627455 Common - hypothetical protein Fphi_1229 21 COG3014 COG3014, Uncharacterized protein conserved in bacteria Function unknown 167627642 Common - cell entry related family protein Fphi_1416 53 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 167627714 Common - hypothetical protein Fphi_1488 6 None None None 167626577 Pathogen - hypothetical protein Fphi_0359 1 None None None 167627963 Common - metabolite:H+ symporter (MHS) family Fphi_1737 134 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167627219 Common - hypothetical protein Fphi_0994 45 COG2837 COG2837, Predicted iron-dependent peroxidase Inorganic ion transport and metabolism 167626736 Common - hypothetical protein Fphi_0517 6 None None None 167627448 Common - response regulator receiver protein Fphi_1222 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 167627259 Pathogen - hypothetical protein Fphi_1036 1 None None None 167627161 Common - NADH dehydrogenase Fphi_0937 187 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 167626887 Common - putative SUA5/YciO/YrdC family protein Fphi_0666 117 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 167626630 Pathogen - lipoprotein of unknown function Fphi_0411 1 None None None 167627904 Common - Transaldolase Fphi_1678 167 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 167627610 Common - sigma54 modulation protein Fphi_1384 148 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 167626288 Common - histidinol-phosphate aminotransferase Fphi_0067 231 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 167626964 Common - diacylglycerol kinase Fphi_0741 110 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 167628014 Pathogen - hypothetical protein Fphi_1786 1 COG1359 COG1359, Uncharacterized conserved protein Function unknown 167627476 Common - putative glucose-1-phosphate thymidyl transferase Fphi_1250 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 167627105 Common - pyridoxal-dependent decarboxylase Fphi_0881 205 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 167626287 Common - Histidinol-phosphatase Fphi_0066 219 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 167627204 Pathogen - hypothetical protein Fphi_0980 1 None None None 167627599 Pathogen - hypothetical protein Fphi_1373 2 None None None 167627948 Common - hypothetical protein Fphi_1722 35 COG2992 Bax, Uncharacterized FlgJ-related protein General function prediction only 167626957 Common - transcriptional regulator, LysR family Fphi_0735 18 COG0583 LysR, Transcriptional regulator Transcription 167627970 Common - invertase/recombinase like protein Fphi_1744 141 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 167627210 Common - putative transposase Fphi_0985 7 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627600 Pathogen - hypothetical protein Fphi_1374 1 None None None 167627609 Pathogen - hypothetical protein Fphi_1383 1 None None None 167627463 Common - bifunctional protein: 3-hydroxacyl-CoA dehydrogenase/acyl-CoA-binding protein Fphi_1237 163 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 167627273 Common - Stearoyl-CoA 9-desaturase Fphi_1050 54 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 167627401 Pathogen - hypothetical protein Fphi_1929 2 None None None 167627756 Common - N-6 DNA methylase family Fphi_1530 159 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 167626772 Common - argininosuccinate lyase Fphi_0553 217 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 167627282 Common - acid phosphatase, HAD superfamily protein Fphi_1059 14 COG2503 COG2503, Predicted secreted acid phosphatase General function prediction only 167627143 Pathogen - hypothetical protein Fphi_0919 1 None None None 167627794 Common - sugar transporter, MFS superfamily Fphi_1567 132 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 167627419 Common - hypothetical protein Fphi_1193 20 COG3397 COG3397, Uncharacterized protein conserved in bacteria Function unknown 167626978 Pathogen - hypothetical protein Fphi_0756 2 None None None 167626950 Common - transcriptional regulator, LysR family Fphi_0728 151 COG0583 LysR, Transcriptional regulator Transcription 167626754 Common - K+ transporter (trk) family protein Fphi_0535 120 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 167626807 Common - ribosomal protein S10 Fphi_0587 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 167628002 Common - NADPH-quinone reductase (modulator of drug activity B) Fphi_1774 46 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 167627542 Common - Hydroxyacylglutathione hydrolase Fphi_1316 211 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 167626442 Common - ROK family protein Fphi_0225 124 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 167626878 Common - peptide chain release factor 2 Fphi_0657 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 167626946 Common - outer membrane lipoprotein Fphi_0724 26 COG2913 SmpA, Small protein A (tmRNA-binding) Translation, ribosomal structure and biogenesis 167626852 Common - UDP-3-O-(3-fatty acid) glucosamine N-acyltransferase Fphi_0632 164 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 167627556 Common - benzaldehyde lyase, putative Fphi_1330 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 167626545 Common - 1,4-alpha-glucan branching enzyme Fphi_0328 144 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 167628025 Common - hypothetical protein Fphi_1797 18 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 167626575 Common - DNA topoisomerase (ATP-hydrolyzing) Fphi_0357 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 167626226 Common - Shikimate kinase Fphi_0005 203 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 167627368 Common - hypothetical protein Fphi_1143 11 COG3469 COG3469, Chitinase Carbohydrate transport and metabolism 167627955 Common - phenylalanyl-tRNA synthetase, alpha subunit Fphi_1729 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 167626488 Common - mechanosensitive ion channel protein Fphi_0271 80 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 167626842 Common - hypothetical protein Fphi_0622 31 None None None 167627936 Common - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase Fphi_1710 102 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 167627833 Common - integrase, catalytic region Fphi_1608 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627719 Common - hypothetical protein Fphi_1492 146 COG1058 CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA General function prediction only 167628127 Common - Phosphopyruvate hydratase Fphi_1902 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 167627992 Common - trk system potassium uptake protein TrkA Fphi_1765 132 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 167627025 Common - Dihydroorotase Fphi_0802 211 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 167626990 Common - branched-chain amino acid aminotransferase protein (class IV) Fphi_0768 216 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 167627686 Common - enoyl-ACP reductase I Fphi_1460 230 COG0623 FabI, Enoyl- acyl-carrier-protein 167627028 Common - carbamoyl-phosphate synthase small chain Fphi_0805 236 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 167626567 Common - DNA-directed DNA polymerase Fphi_0349 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 167627309 Common - hypothetical protein Fphi_1085 26 COG4648 COG4648, Predicted membrane protein Function unknown 167626423 Common - dGTP triphosphohydrolase Fphi_0205 160 COG0232 Dgt, dGTP triphosphohydrolase Nucleotide transport and metabolism 167627383 Common - capsular polysaccharide ABC transporter Fphi_1158 45 COG3524 KpsE, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 167627801 Common - small conductance mechanosensitive ion channel family protein Fphi_1573 3 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 167626907 Common - ABC transporter, ATP-binding protein Fphi_0685 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 167627562 Common - 3-methyl-2-oxobutanoate hydroxymethyltransferase Fphi_1336 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 167627569 Common - hypothetical protein Fphi_1343 116 COG2855 COG2855, Predicted membrane protein Function unknown 167626692 Common - CDP-alcohol phosphatidyltransferase Fphi_0473 150 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 167627841 Common - ABC transporter, ATP-binding protein Fphi_1616 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 167627808 Common - GTP-binding protein Fphi_1583 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 167627628 Common - co-chaperone GrpE Fphi_1402 231 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 167627032 Common - integrase, catalytic region Fphi_0809 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626394 Common - Phosphoglycerate mutase Fphi_0172 125 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 167626662 Common - putative transcriptional regulator, ArsR family Fphi_0443 86 COG0640 ArsR, Predicted transcriptional regulators Transcription 167627933 Common - hypothetical protein Fphi_1707 46 COG2921 COG2921, Uncharacterized conserved protein Function unknown 167627100 Common - Prolyl aminopeptidase Fphi_0876 114 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 167627870 Pathogen - hypothetical protein Fphi_1644 1 None None None 167627441 Common - short chain dehydrogenase Fphi_1215 209 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 167626495 Common - peptidyl-prolyl cis-trans isomerase (PPIase) Fphi_0278 87 None None None 167626975 Common - SAM-dependent methyltransferase Fphi_0753 211 COG0313 COG0313, Predicted methyltransferases General function prediction only 167627319 Common - putative enzyme Fphi_1095 121 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 167627385 Common - polysialic acid transport protein KpsM Fphi_1160 126 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 167627310 Common - putative acyl carrier protein Fphi_1086 69 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 167627068 Pathogen - hypothetical protein Fphi_0844 2 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 167627899 Common - DNA and RNA helicase superfamily I protein Fphi_1673 229 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 167627668 Common - hypothetical protein Fphi_1442 40 COG3079 COG3079, Uncharacterized protein conserved in bacteria Function unknown 167628080 Common - DEAD-box subfamily ATP-dependent helicase Fphi_1851 237 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 167627571 Common - hypothetical protein Fphi_1346 74 COG4121 COG4121, Uncharacterized conserved protein Function unknown 167626712 Common - 50S ribosomal protein L33 Fphi_0493 132 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 167626809 Common - 30S ribosomal protein S7 Fphi_0589 238 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 167626793 Common - 30S ribosomal protein S14 Fphi_0574 210 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 167626891 Common - integrase, catalytic region Fphi_0670 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167626402 Common - ABC-type transport ATP-binding protein CydC Fphi_0180 249 COG4987 CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 167628055 Common - DEAD/DEAH box helicase-like protein Fphi_1827 16 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 167627747 Common - Carbonate dehydratase Fphi_1521 145 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 167628134 Pathogen - hypothetical protein Fphi_1909 1 None None None 167626254 Common - hypothetical protein Fphi_0033 180 COG1496 COG1496, Uncharacterized conserved protein Function unknown 167627496 Common - phosphomannomutase Fphi_1270 241 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 167627393 Common - UDP-N-acetylglucosamine 2-epimerase Fphi_1168 78 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 167626660 Common - Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) Fphi_0440 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 167627236 Common - lipid A transport protein, ABC type transporter, ATP-binding and permease protein Fphi_1011 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 167626523 Common - integrase, catalytic region Fphi_0306 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 167627295 Common - Glutamyl-tRNA reductase Fphi_1071 180 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 167627264 Common - transcription antitermination protein NusG Fphi_1041 215 COG0250 NusG, Transcription antiterminator Transcription 167627288 Common - N-acetylmuramoyl-L-alanine amidase Fphi_1064 106 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 167627754 Common - type I restriction-modification system, subunit M (methyltransferase) Fphi_1528 34 None None None 167627503 Common - major facilitator superfamily (MFS) transport protein Fphi_1277 154 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626432 Common - chitinase, glycosyl hydrolase family 18 Fphi_0215 42 COG3325 ChiA, Chitinase Carbohydrate transport and metabolism 167628064 Common - hypothetical protein Fphi_1836 11 None None None 167626505 Common - stringent starvation protein A Fphi_0288 79 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 167626598 Common - intracellular septation protein A family protein Fphi_0380 80 COG2917 COG2917, Intracellular septation protein A Cell division and chromosome partitioning 167626383 Common - Leucyl aminopeptidase Fphi_0161 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 167626962 Pathogen - hypothetical protein Fphi_0740 1 None None None 167627742 Common - RNA polymerase sigma-32 factor Fphi_1516 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 167626719 Common - hypothetical protein Fphi_0500 42 COG2854 Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component Secondary metabolites biosynthesis, transport, and catabolism 167626984 Common - LPS fatty acid acyltransferase Fphi_0762 106 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 167626642 Pathogen - type IV pili, pilus assembly protein Fphi_0423 1 COG4969 PilA, Tfp pilus assembly protein, major pilin PilA Cell motility and secretion / Intracellular trafficking and secretion 167627281 Common - oxidoreductase iron/ascorbate family protein Fphi_1057 52 COG3491 PcbC, Isopenicillin N synthase and related dioxygenases General function prediction only 167626933 Common - indolepyruvate decarboxylase Fphi_0711 196 COG3961 COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only 167627680 Common - hypothetical protein Fphi_1454 61 COG1738 COG1738, Uncharacterized conserved protein Function unknown 167626695 Common - FKBP-type peptidyl-prolyl cis-trans isomerase Fphi_0476 135 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 167626912 Pathogen - CrcB family protein Fphi_0690 1 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 167626620 Common - transcriptional regulator, AraC family Fphi_0400 71 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 167628087 Common - histidine triad family protein Fphi_1860 56 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 167627859 Common - hypothetical protein Fphi_1634 10 COG3014 COG3014, Uncharacterized protein conserved in bacteria Function unknown 167626645 Common - aspartate/tyrosine/aromatic aminotransferase Fphi_0426 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 167627989 Common - SufS activator complex, SufC subunit Fphi_1762 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 167627717 Pathogen - putative transposase, IS1016 family Fphi_1491 3 COG3676 COG3676, Transposase and inactivated derivatives DNA replication, recombination, and repair 167627522 Common - Zn-dependent hydrolase Fphi_1296 204 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 167627984 Common - amino acid transporter (AAT) family protein Fphi_1758 89 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 167626683 Common - hypothetical protein Fphi_0464 75 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 167626937 Common - GTP cyclohydrolase II Fphi_0715 232 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 167627796 Common - RmuC family protein Fphi_1569 137 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 167626619 Common - major facilitator superfamily MFS_1 Fphi_0401 72 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 167626898 Common - hypothetical protein Fphi_0677 11 COG3608 COG3608, Predicted deacylase General function prediction only 167627890 Common - betaine/carnitine/choline transporter (BCCT) family protein Fphi_1665 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 167627176 Common - hypothetical protein Fphi_0952 101 COG1485 COG1485, Predicted ATPase General function prediction only 167627235 Common - tRNA nucleotidyl transferase Fphi_1010 194 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 167627614 Common - solute:sodium symporter Fphi_1389 82 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 167626329 Common - ribosomal protein L20 Fphi_0107 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 167626514 Common - Phosphoenolpyruvate carboxykinase (ATP) Fphi_0297 97 COG1866 PckA, Phosphoenolpyruvate carboxykinase (ATP) Energy production and conversion 167626354 Common - Alkaline phosphatase Fphi_0132 78 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 167626451 Common - Peptidoglycan glycosyltransferase Fphi_0234 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 167627016 Pathogen - hypothetical protein Fphi_0793 1 None None None 167627539 Common - uroporphyrinogen-III synthase Fphi_1313 13 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 167626458 Common - DNA topoisomerase (ATP-hydrolyzing) Fphi_0241 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 167626889 Common - 1-acylglycerol-3-phosphate acyltransferase Fphi_0668 29 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 167626649 Common - sterol desaturase Fphi_0429 78 COG3000 ERG3, Sterol desaturase Lipid metabolism 167627437 Common - Ribonuclease III Fphi_1211 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 167626322 Pathogen - conserved hypothetical lipoprotein Fphi_0100 1 None None None 167627729 Common - conserved membrane protein of unknown function Fphi_1503 170 COG0344 COG0344, Predicted membrane protein Function unknown 167627096 Pathogen - hypothetical protein Fphi_0872 1 None None None 167626724 Pathogen - hypothetical protein Fphi_0505 1 None None None 167627632 Common - NAD(+) synthase (glutamine-hydrolyzing) Fphi_1406 225 COG0171 NadE, NAD synthase Coenzyme metabolism 167627428 Pathogen - hypothetical protein Fphi_1202 1 None None None 167626264 Common - rubredoxin Fphi_0043 115 COG1773 COG1773, Rubredoxin Energy production and conversion 167627674 Pathogen - hypothetical protein Fphi_1448 1 None None None 167626331 Common - translation initiation factor IF-3 Fphi_0109 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 167626539 Common - 4-alpha-glucanotransferase Fphi_0322 116 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 167626530 Common - Aspartate kinase, Homoserine dehydrogenase Fphi_0313 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 167626783 Common - 30S ribosomal protein S4 Fphi_0564 218 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 167626949 Common - drug:H+ antiporter-1 (DHA1) family protein Fphi_0727 196 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 167626368 Common - ribosomal protein L21 Fphi_0146 160 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 167628104 Common - hypothetical protein Fphi_1877 139 COG2510 COG2510, Predicted membrane protein Function unknown 167627227 Common - two-component regulator, sensor histidine kinase Fphi_1001 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 167628048 Common - hypothetical protein Fphi_1820 160 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 167626969 Common - metabolite:H+ symporter (MHS) family protein Fphi_0747 123 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 167627085 Common - 4Fe-4S ferredoxin Fphi_0861 150 COG1146 COG1146, Ferredoxin Energy production and conversion 167626248 Common - apolipoprotein N-acyltransferase Fphi_0027 165 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 167626612 Pathogen - membrane protein of unknown function Fphi_0393 1 None None None 167626448 Common - hypothetical protein Fphi_0231 166 COG0316 IscA, Uncharacterized conserved protein Function unknown 167626752 Pathogen - membrane protein of unknown function Fphi_0533 2 None None None 167626760 Common - phenol 2-monooxygenase Fphi_0541 158 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 167627661 Common - cysteine desulfurase Fphi_1435 236 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 167627949 Common - putative transcriptional regulator, XRE family Fphi_1723 53 COG3655 COG3655, Predicted transcriptional regulator Transcription 167626396 Common - ROK family protein Fphi_0174 121 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 167627355 Common - phage integrase family protein Fphi_1130 227 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 167627014 Pathogen - hypothetical protein Fphi_0791 1 None None None 167626738 Pathogen - pilus assembly protein Fphi_0519 1 None None None 167627417 Pathogen - chitin-binding protein Fphi_1191 1 None None None 167626241 Common - hypothetical protein Fphi_0020 36 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 167627240 Common - Phosphopentomutase Fphi_1015 70 COG1015 DeoB, Phosphopentomutase Carbohydrate transport and metabolism 167627113 Common - response regulator receiver protein Fphi_0890 218 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 167626482 Common - ATP-binding cassette putrescine uptake system, periplasmic protein Fphi_0265 125 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 167627889 Common - rRNA methyltransferase Fphi_1663 196 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 167626769 Common - CTP synthase Fphi_0550 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 167627296 Common - peptide chain release factor 1 Fphi_1072 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 167626627 Pathogen - hypothetical protein Fphi_0408 1 None None None 167627450 Pathogen - hypothetical protein Fphi_1224 1 None None None 167627622 Common - macrophage growth locus, subunit B Fphi_1396 64 COG2969 SspB, Stringent starvation protein B General function prediction only 167627973 Common - sulphate transporter Fphi_1747 160 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 167627325 Common - amino acid-polyamine-organocation (APC) superfamily protein Fphi_1100 157 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 167626703 Common - arsenate reductase Fphi_0484 43 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 167627461 Common - hypothetical protein Fphi_1234 11 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism