Dinoroseobacter shibae DFL 12 plasmid pDSHI01, complete sequence NC_009955 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 159046222 Common - Resolvase domain Dshi_3680 137 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 159046324 Common - multicopper oxidase type 3 Dshi_3785 135 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 159046204 Common - putative transposase Dshi_3662 31 None None None 159046168 Common - cation diffusion facilitator family transporter Dshi_3626 215 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 159046297 Common - transposase IS4 family protein Dshi_3758 54 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 159046201 Nonpathogen - hypothetical protein Dshi_3659 1 None None None 159046277 Common - transposase IS116/IS110/IS902 family protein Dshi_3738 27 None None None 159046275 Common - Integrase catalytic region Dshi_3736 141 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 159046213 Common - pentapeptide repeat protein Dshi_3671 51 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 159046313 Nonpathogen - hypothetical protein Dshi_3774 9 COG3462 COG3462, Predicted membrane protein Function unknown 159046265 Common - inner-membrane translocator Dshi_3725 147 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 159046149 Common - ErfK/YbiS/YcfS/YnhG family protein Dshi_3607 57 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 159046306 Common - cation diffusion facilitator family transporter Dshi_3767 203 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 159046249 Common - TRAP dicarboxylate transporter, DctM subunit Dshi_3709 134 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 159046218 Common - transposase Tn3 family protein Dshi_3676 56 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 159046196 Common - hypothetical protein Dshi_3654 15 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 159046184 Nonpathogen - hypothetical protein Dshi_3642 2 None None None 159046136 Common - protein of unknown function DUF305 Dshi_3594 19 COG3544 COG3544, Uncharacterized protein conserved in bacteria Function unknown 159046232 Nonpathogen - ParB-like nuclease Dshi_3690 5 COG5489 COG5489, Uncharacterized conserved protein Function unknown 159046156 Common - lipoprotein signal peptidase Dshi_3614 154 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 159046151 Common - heavy metal translocating P-type ATPase Dshi_3609 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 159046198 Common - Relaxase/mobilization nuclease family protein Dshi_3656 17 None None None 159046252 Common - short-chain dehydrogenase/reductase SDR Dshi_3712 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159046263 Common - Enoyl-CoA hydratase/isomerase Dshi_3723 179 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 159046302 Nonpathogen - hypothetical protein Dshi_3763 3 None None None 159046224 Common - transposase IS4 family protein Dshi_3682 57 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 159046326 Common - DSBA oxidoreductase Dshi_3787 103 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 159046290 Common - integrase family protein Dshi_3751 74 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 159046329 Common - transcriptional regulator, MerR family Dshi_3790 142 COG0789 SoxR, Predicted transcriptional regulators Transcription 159046161 Common - protein of unknown function DUF461 Dshi_3619 82 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 159046279 Nonpathogen - hypothetical protein Dshi_3740 1 None None None 159046186 Common - hypothetical protein Dshi_3644 13 None None None 159046227 Common - BioY protein Dshi_3685 34 COG1268 BioY, Uncharacterized conserved protein General function prediction only 159046163 Common - Disulphide bond formation protein DsbB Dshi_3621 21 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 159046220 Common - ATP-binding protein Dshi_3678 8 COG2842 COG2842, Uncharacterized ATPase, putative transposase General function prediction only 159046287 Common - Resolvase domain Dshi_3748 137 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 159046280 Common - domain of unknown function DUF1738 Dshi_3741 48 COG4227 COG4227, Antirestriction protein DNA replication, recombination, and repair 159046304 Common - protein of unknown function DUF411 Dshi_3765 64 COG3019 COG3019, Predicted metal-binding protein General function prediction only 159046299 Nonpathogen - hypothetical protein Dshi_3760 3 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 159046270 Common - transcriptional regulator, AbrB family Dshi_3730 10 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 159046238 Common - integrase family protein Dshi_3696 218 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 159046282 Common - replication protein C Dshi_3743 17 None None None 159046140 Common - ErfK/YbiS/YcfS/YnhG family protein Dshi_3598 64 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 159046178 Nonpathogen - hypothetical protein Dshi_3636 2 None None None 159046202 Common - hypothetical protein Dshi_3660 19 None None None 159046318 Common - thiol:disulfide interchange protein DsbD 1 precursor Dshi_3779 144 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 159046240 Common - integrase family protein Dshi_3698 158 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 159046138 Common - multicopper oxidase type 3 Dshi_3596 131 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 159046158 Common - protein of unknown function DUF411 Dshi_3616 64 COG3019 COG3019, Predicted metal-binding protein General function prediction only 159046289 Common - plasmid stabilization system Dshi_3750 16 COG3668 ParE, Plasmid stabilization system protein General function prediction only 159046254 Common - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Dshi_3714 151 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 159046269 Common - hypothetical protein Dshi_3729 21 None None None 159046311 Common - two component transcriptional regulator, winged helix family Dshi_3772 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 159046188 Common - Conjugal transfer protein TrbG/VirB9/CagX Dshi_3646 53 COG3504 VirB9, Type IV secretory pathway, VirB9 components Intracellular trafficking and secretion 159046180 Common - Lytic transglycosylase catalytic Dshi_3638 140 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 159046211 Common - Exopolysaccharide synthesis ExoD Dshi_3669 13 COG3932 COG3932, Uncharacterized ABC-type transport system, permease components General function prediction only 159046294 Common - filamentation induced by cAMP protein Fic Dshi_3755 105 COG3177 COG3177, Uncharacterized conserved protein Function unknown 159046317 Common - TPR repeat-containing protein Dshi_3778 43 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 159046300 Common - ISSpo6, transposase orf A Dshi_3761 6 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 159046320 Common - ErfK/YbiS/YcfS/YnhG family protein Dshi_3781 79 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 159046272 Nonpathogen - hypothetical protein Dshi_3732 1 None None None 159046242 Common - integrase family protein Dshi_3700 223 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 159046292 Common - chromosome segregation and condensation protein ScpB Dshi_3753 94 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 159046217 Nonpathogen - hypothetical protein Dshi_3675 1 None None None 159046281 Nonpathogen - hypothetical protein Dshi_3742 1 None None None 159046229 Common - cobalt transport protein Dshi_3687 74 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 159046165 Common - transcriptional regulator, MerR family Dshi_3623 143 COG0789 SoxR, Predicted transcriptional regulators Transcription 159046244 Common - fatty acid hydroxylase Dshi_3702 11 None None None 159046330 Common - glutaredoxin Dshi_3791 21 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 159046260 Common - molybdopterin dehydrogenase FAD-binding Dshi_3720 90 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 159046152 Nonpathogen - hypothetical protein Dshi_3610 1 None None None 159046215 Common - hypothetical protein Dshi_3673 7 None None None 159046190 Common - type II secretion system protein E Dshi_3648 187 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 159046145 Common - heavy metal translocating P-type ATPase Dshi_3603 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 159046256 Common - UbiD family decarboxylase Dshi_3716 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 159046239 Common - integrase family protein Dshi_3697 84 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 159046173 Common - transcriptional regulator, AraC family Dshi_3631 94 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 159046274 Common - transposase IS116/IS110/IS902 family protein Dshi_3734 15 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 159046219 Common - hypothetical protein Dshi_3677 41 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 159046296 Common - transposase orfA IS5 family element Dshi_3757 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 159046182 Common - type IV secretory pathway VirB3 family protein Dshi_3640 9 COG3702 VirB3, Type IV secretory pathway, VirB3 components Intracellular trafficking and secretion 159046137 Common - ErfK/YbiS/YcfS/YnhG family protein Dshi_3595 79 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 159046283 Nonpathogen - RC101 Dshi_3744 6 COG1475 Spo0J, Predicted transcriptional regulators Transcription 159046307 Common - SNARE associated Golgi protein Dshi_3768 20 COG0398 COG0398, Uncharacterized conserved protein Function unknown 159046322 Nonpathogen - putative cytochrome c-like protein Dshi_3783 7 COG3909 COG3909, Cytochrome c556 Energy production and conversion 159046171 Common - integrase family protein Dshi_3629 227 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 159046147 Nonpathogen - hypothetical protein Dshi_3605 1 None None None 159046251 Common - TRAP dicarboxylate transporter- DctP subunit Dshi_3711 98 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 159046167 Common - hypothetical protein Dshi_3625 9 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 159046192 Nonpathogen - hypothetical protein Dshi_3650 2 None None None 159046315 Common - periplasmic protein thiol--disulphide oxidoreductase DsbE Dshi_3776 121 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 159046154 Nonpathogen - hypothetical protein Dshi_3612 3 None None None 159046246 Common - transposase IS3/IS911 family protein Dshi_3706 42 None None None 159046285 Nonpathogen - hypothetical protein Dshi_3746 1 None None None 159046258 Common - transcriptional regulator, AraC family Dshi_3718 108 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 159046309 Nonpathogen - ion transport 2 domain protein Dshi_3770 1 None None None 159046237 Common - type III restriction protein res subunit Dshi_3695 76 COG4951 COG4951, Uncharacterized protein conserved in bacteria Function unknown 159046234 Common - hypothetical protein Dshi_3692 9 None None None 159046194 Nonpathogen - hypothetical protein Dshi_3652 2 None None None 159046209 Common - hypothetical protein Dshi_3667 36 COG3809 COG3809, Uncharacterized protein conserved in bacteria Function unknown 159046267 Common - ABC transporter related Dshi_3727 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 159046235 Common - hypothetical protein Dshi_3693 6 None None None 159046248 Common - transcriptional regulator, AraC family Dshi_3708 61 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 159046241 Common - putative methylase/helicase Dshi_3699 18 COG2263 COG2263, Predicted RNA methylase Translation, ribosomal structure and biogenesis 159046250 Common - Tripartite ATP-independent periplasmic transporter DctQ component Dshi_3710 25 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 159046157 Common - zinc/iron permease Dshi_3615 105 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 159046205 Common - putative membrane protein of unknown function Dshi_3663 42 COG3174 COG3174, Predicted membrane protein Function unknown 159046139 Common - disulphide bond formation protein DsbB Dshi_3597 30 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 159046253 Common - hypothetical protein Dshi_3713 18 COG5589 COG5589, Uncharacterized conserved protein Function unknown 159046310 Common - hypothetical protein Dshi_3771 9 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 159046325 Common - cytochrome c class I Dshi_3786 21 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 159046223 Common - thiamine biosynthesis protein ThiC Dshi_3681 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 159046169 Nonpathogen - hypothetical protein Dshi_3627 3 None None None 159046207 Common - transcriptional modulator of MazE/toxin, MazF Dshi_3665 29 COG2337 MazF, Growth inhibitor Signal transduction mechanisms 159046183 Common - CagE TrbE VirB component of type IV transporter system Dshi_3641 64 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 159046200 Nonpathogen - hypothetical protein Dshi_3658 2 None None None 159046160 Common - electron transport protein SCO1/SenC Dshi_3618 104 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 159046278 Common - Integrase catalytic region Dshi_3739 145 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 159046288 Common - putative addiction module antidote protein, CopG/Arc/MetJ family Dshi_3749 6 COG3609 COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain Transcription 159046312 Common - integral membrane sensor signal transduction histidine kinase Dshi_3773 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 159046276 Common - transposase IS3/IS911 family protein Dshi_3737 42 None None None 159046148 Common - cytochrome c biogenesis protein transmembrane region Dshi_3606 132 COG0785 CcdA, Cytochrome c biogenesis protein Posttranslational modification, protein turnover, chaperones 159046233 Nonpathogen - hypothetical protein Dshi_3691 1 None None None 159046170 Nonpathogen - hypothetical protein Dshi_3628 3 None None None 159046230 Common - BioY protein Dshi_3688 78 COG1268 BioY, Uncharacterized conserved protein General function prediction only 159046177 Common - transcriptional regulator, XRE family Dshi_3635 17 COG1813 COG1813, Predicted transcription factor, homolog of eukaryotic MBF1 Transcription 159046141 Nonpathogen - lipoprotein, putative Dshi_3599 6 None None None 159046319 Nonpathogen - hypothetical protein Dshi_3780 1 None None None 159046255 Common - transcriptional regulator, LysR family Dshi_3715 189 COG0583 LysR, Transcriptional regulator Transcription 159046262 Common - AMP-dependent synthetase and ligase Dshi_3722 222 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 159046203 Common - integrase family protein Dshi_3661 227 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 159046199 Nonpathogen - transposase IS3/IS911 family protein Dshi_3657 2 None None None 159046150 Nonpathogen - hypothetical protein Dshi_3608 3 None None None 159046159 Common - peptidase M23B Dshi_3617 190 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 159046197 Common - TRAG family protein Dshi_3655 70 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 159046327 Common - Heavy metal transport/detoxification protein Dshi_3788 27 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 159046143 Common - protein of unknown function DUF302 Dshi_3601 44 COG3439 COG3439, Uncharacterized conserved protein Function unknown 159046264 Common - Extracellular ligand-binding receptor Dshi_3724 147 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 159046225 Common - Resolvase domain Dshi_3683 123 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 159046303 Nonpathogen - cyclic nucleotide-binding protein Dshi_3764 10 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 159046271 Nonpathogen - hypothetical protein Dshi_3731 3 None None None 159046298 Common - transposase IS116/IS110/IS902 family protein Dshi_3759 90 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 159046212 Common - Na+/Ca+ antiporter, CaCA family Dshi_3670 117 COG0530 ECM27, Ca2+/Na+ antiporter Inorganic ion transport and metabolism 159046162 Common - DSBA oxidoreductase Dshi_3620 79 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 159046221 Common - Integrase catalytic region Dshi_3679 79 None None None 159046175 Common - hypothetical protein Dshi_3633 20 None None None 159046185 Common - Lytic transglycosylase catalytic Dshi_3643 148 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 159046153 Common - iron (metal) dependent repressor, DtxR family Dshi_3611 98 COG1321 TroR, Mn-dependent transcriptional regulator Transcription 159046164 Common - electron transport protein SCO1/SenC Dshi_3622 105 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 159046243 Common - putative transposase Dshi_3701 34 None None None 159046305 Common - fatty acid hydroxylase Dshi_3766 78 COG3000 ERG3, Sterol desaturase Lipid metabolism 159046268 Common - ABC transporter related Dshi_3728 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 159046245 Common - Integrase catalytic region Dshi_3705 141 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 159046314 Common - cytochrome c-type biogenesis protein CcmF Dshi_3775 122 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 159046176 Nonpathogen - hypothetical protein Dshi_3634 2 None None None 159046214 Common - protein of unknown function DUF21 Dshi_3672 219 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 159046193 Nonpathogen - TrbL/VirB6 plasmid conjugal transfer protein Dshi_3651 2 COG3704 VirB6, Type IV secretory pathway, VirB6 components Intracellular trafficking and secretion 159046208 Nonpathogen - hypothetical protein Dshi_3666 1 None None None 159046257 Common - aldehyde dehydrogenase Dshi_3717 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 159046142 Nonpathogen - Calcium-binding EF-hand-containing protein Dshi_3600 2 None None None 159046231 Common - hypothetical protein Dshi_3689 5 None None None 159046293 Common - WGR domain protein Dshi_3754 16 COG3831 COG3831, Uncharacterized conserved protein Function unknown 159046187 Common - VirB8 family protein Dshi_3645 14 COG3736 VirB8, Type IV secretory pathway, component VirB8 Intracellular trafficking and secretion 159046166 Common - cation efflux protein Dshi_3624 52 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 159046273 Common - parB-like partition protein Dshi_3733 58 COG1475 Spo0J, Predicted transcriptional regulators Transcription 159046284 Common - RC102 Dshi_3745 59 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 159046316 Common - cytochrome C biogenesis protein Dshi_3777 90 COG3088 CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes Posttranslational modification, protein turnover, chaperones 159046321 Nonpathogen - cytochrome c class I Dshi_3782 5 COG2863 COG2863, Cytochrome c553 Energy production and conversion 159046261 Common - (2Fe-2S)-binding domain protein Dshi_3721 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 159046291 Common - protein of unknown function DUF1403 Dshi_3752 9 None None None 159046328 Common - heavy metal translocating P-type ATPase Dshi_3789 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 159046301 Common - ISSpo6, transposase OrfB Dshi_3762 43 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 159046226 Nonpathogen - hypothetical protein Dshi_3684 3 None None None 159046191 Nonpathogen - hypothetical protein Dshi_3649 2 None None None 159046195 Common - DNA-directed DNA polymerase Dshi_3653 164 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 159046155 Common - apolipoprotein N-acyltransferase Dshi_3613 165 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 159046259 Common - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding Dshi_3719 108 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 159046266 Common - inner-membrane translocator Dshi_3726 153 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 159046247 Common - transposase, IS4 family protein Dshi_3707 3 None None None 159046206 Common - hypothetical protein Dshi_3664 16 None None None 159046174 Common - L-carnitine dehydratase/bile acid-inducible protein F Dshi_3632 115 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 159046236 Common - hypothetical protein Dshi_3694 22 None None None 159046308 Nonpathogen - hypothetical protein Dshi_3769 1 None None None 159046181 Common - Conjugal transfer protein TrbC Dshi_3639 10 COG3838 VirB2, Type IV secretory pathway, VirB2 components (pilins) Intracellular trafficking and secretion 159046144 Common - prolipoprotein diacylglyceryl transferase Dshi_3602 205 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 159046228 Common - ABC transporter related Dshi_3686 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 159046210 Common - protein of unknown function UPF0005 Dshi_3668 128 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 159046295 Nonpathogen - hypothetical protein Dshi_3756 3 None None None 159046189 Common - conjugation TrbI family protein Dshi_3647 59 COG2948 VirB10, Type IV secretory pathway, VirB10 components Intracellular trafficking and secretion 159046286 Common - hypothetical protein Dshi_3747 38 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 159046179 Nonpathogen - hypothetical protein Dshi_3637 3 None None None 159046323 Common - Gluconate 2-dehydrogenase (acceptor) Dshi_3784 52 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 159046172 Common - putative transposase Dshi_3630 31 None None None 159046146 Common - amino acid permease-associated region Dshi_3604 125 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 159046216 Common - cyclic nucleotide-binding protein Dshi_3674 110 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism