Acaryochloris marina MBIC11017 plasmid pREB4, complete sequence NC_009929 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 158340707 Nonpathogen - hypothetical protein AM1_D0066 1 None None None 158340845 Common - oxidoreductase, zinc-binding dehydrogenase family protein AM1_D0204 184 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 158340700 Nonpathogen - hypothetical protein AM1_D0059 1 None None None 158340861 Nonpathogen - helix-turn-helix domain protein AM1_D0220 2 COG1396 HipB, Predicted transcriptional regulators Transcription 158340714 Nonpathogen - hypothetical protein AM1_D0073 1 None None None 158340650 Common - hypothetical protein AM1_D0007 28 COG1799 COG1799, Uncharacterized protein conserved in bacteria Function unknown 158340863 Nonpathogen - hypothetical protein AM1_D0224 2 None None None 158340744 Common - hypothetical protein AM1_D0103 41 COG3657 COG3657, Uncharacterized protein conserved in bacteria Function unknown 158340659 Nonpathogen - hypothetical protein AM1_D0016 1 None None None 158340789 Common - alcohol dehydrogenase, zinc-containing AM1_D0148 208 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 158340721 Nonpathogen - hypothetical protein AM1_D0080 1 None None None 158340766 Common cheY response regulator CheY, putative AM1_D0125 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 158340679 Nonpathogen - hypothetical protein AM1_D0036 4 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 158340670 Nonpathogen - hypothetical protein AM1_D0027 1 None None None 158340680 Nonpathogen - hypothetical protein AM1_D0037 1 None None None 158340780 Common - cell shape determining protein, MreB/Mrl family, putative AM1_D0139 174 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 158340907 Nonpathogen - hypothetical protein AM1_D0270 1 None None None 158340814 Common - universal stress protein AM1_D0173 115 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 158340792 Common - efflux transporter, RND family, MFP subunit AM1_D0151 105 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 158340874 Nonpathogen - hypothetical protein AM1_D0235 1 None None None 158340832 Nonpathogen - hypothetical protein AM1_D0191 23 COG4089 COG4089, Predicted membrane protein Function unknown 158340822 Nonpathogen - hypothetical protein AM1_D0181 1 None None None 158340798 Common atpD ATP synthase F1, beta subunit AM1_D0157 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 158340833 Common hypB hydrogenase accessory protein HypB AM1_D0192 145 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 158340734 Common - heat shock protein (HSP20) family protein AM1_D0093 112 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 158340697 Common - transposase-associated ATP-binding protein, putative AM1_D0056 93 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 158340769 Common - chromosome partitioning protein, ParA family, putative AM1_D0128 190 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 158340846 Nonpathogen - hypothetical protein AM1_D0205 1 None None None 158340902 Common - xenobiotic reductase B AM1_D0265 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 158340676 Nonpathogen - hypothetical protein AM1_D0033 1 None None None 158340698 Common - hypothetical protein AM1_D0057 63 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 158340829 Common hypC hydrogenase assembly chaperone HypC/HupF AM1_D0188 91 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 158340805 Common atpF H(+)-transporting ATP synthase, subunit B, putative AM1_D0164 24 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 158340886 Nonpathogen - hypothetical protein AM1_D0249 1 None None None 158340653 Nonpathogen - hypothetical protein AM1_D0010 1 None None None 158340745 Nonpathogen - hypothetical protein AM1_D0104 1 None None None 158340783 Nonpathogen - hypothetical protein AM1_D0142 1 None None None 158340869 Nonpathogen - hypothetical protein AM1_D0230 1 None None None 158340910 Common - RNA-binding protein AM1_D0273 66 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 158340806 Common atpA ATP synthase F1, alpha subunit AM1_D0165 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 158340722 Nonpathogen - hypothetical protein AM1_D0081 1 None None None 158340774 Nonpathogen - hypothetical protein AM1_D0133 1 None None None 158340862 Nonpathogen - hypothetical protein AM1_D0223 1 None None None 158340682 Nonpathogen - hypothetical protein AM1_D0039 3 None None None 158340800 Common - F0F1-ATPase subunit, putative AM1_D0159 17 None None None 158340658 Nonpathogen - hypothetical protein AM1_D0015 1 None None None 158340715 Nonpathogen - hypothetical protein AM1_D0074 1 None None None 158340732 Common - hypothetical protein AM1_D0091 10 None None None 158340759 Nonpathogen - hypothetical protein AM1_D0118 1 None None None 158340915 Nonpathogen - hypothetical protein AM1_D0278 1 None None None 158340894 Nonpathogen - hypothetical protein AM1_D0257 5 None None None 158340821 Common - ABC transporter, periplasmic substrate-binding protein AM1_D0180 147 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 158340873 Common - universal stress protein AM1_D0234 127 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 158340813 Common - polysaccharide deacetylase AM1_D0172 106 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 158340690 Common - hypothetical protein AM1_D0047 3 None None None 158340864 Common - hypothetical protein AM1_D0225 6 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 158340652 Nonpathogen - hypothetical protein AM1_D0009 1 None None None 158340761 Common - hypothetical protein AM1_D0120 15 COG2887 COG2887, RecB family exonuclease DNA replication, recombination, and repair 158340683 Nonpathogen - hypothetical protein AM1_D0040 1 None None None 158340828 Common hoxH hydrogenase large subunit HoxH AM1_D0187 103 COG3259 FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit Energy production and conversion 158340688 Common - TPR repeat domain protein AM1_D0045 92 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 158340899 Nonpathogen - hypothetical protein AM1_D0262 3 None None None 158340852 Common - hypothetical protein AM1_D0211 57 COG3174 COG3174, Predicted membrane protein Function unknown 158340843 Nonpathogen - hypothetical protein AM1_D0202 1 None None None 158340883 Nonpathogen - hypothetical protein AM1_D0246 1 None None None 158340735 Nonpathogen - hypothetical protein AM1_D0094 1 None None None 158340671 Nonpathogen - hypothetical protein AM1_D0028 1 None None None 158340788 Common - heat shock protein Hsp20, putative AM1_D0147 153 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 158340754 Nonpathogen - hypothetical protein AM1_D0113 1 None None None 158340677 Nonpathogen - hypothetical protein AM1_D0034 1 None None None 158340908 Common - CAB/ELIP/HLIP superfamily protein, putative AM1_D0271 9 None None None 158340755 Nonpathogen - hypothetical protein AM1_D0114 3 COG3189 COG3189, Uncharacterized conserved protein Function unknown 158340716 Nonpathogen - hypothetical protein AM1_D0075 2 None None None 158340738 Nonpathogen - hypothetical protein AM1_D0097 1 None None None 158340848 Common groS chaperonin GroES AM1_D0207 215 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 158340702 Nonpathogen - hypothetical protein AM1_D0061 1 None None None 158340742 Common - transcriptional regulator containing helix turn helix domain AM1_D0101 18 COG5499 COG5499, Predicted transcription regulator containing HTH domain Transcription 158340756 Nonpathogen - hypothetical protein AM1_D0115 1 None None None 158340723 Nonpathogen - hypothetical protein AM1_D0082 1 None None None 158340669 Nonpathogen - hypothetical protein AM1_D0026 1 None None None 158340803 Common atpB ATP synthase F0, A subunit AM1_D0162 193 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 158340685 Nonpathogen - hypothetical protein AM1_D0042 1 None None None 158340905 Nonpathogen - hypothetical protein AM1_D0268 1 None None None 158340672 Common - RNA polymerase sigma factor AM1_D0029 215 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 158340900 Nonpathogen - hypothetical protein AM1_D0263 3 None None None 158340893 Common - metallo-beta-lactamase family protein AM1_D0256 204 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 158340858 Nonpathogen - hypothetical protein AM1_D0217 1 None None None 158340748 Common - hypothetical protein AM1_D0107 16 None None None 158340888 Common - hypothetical protein AM1_D0251 20 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 158340839 Common - two-component hybrid sensor and regulator AM1_D0198 237 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 158340651 Common - hypothetical protein AM1_D0008 39 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 158340743 Common - hypothetical protein AM1_D0102 20 COG3636 COG3636, Predicted transcriptional regulator Transcription 158340729 Nonpathogen - hypothetical protein AM1_D0088 1 None None None 158340830 Common hypF Ni-Fe hydrogenase maturation protein HypF AM1_D0189 115 COG0068 HypF, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 158340709 Nonpathogen - hypothetical protein AM1_D0068 2 None None None 158340823 Common hoxU hydrogenase subunit U AM1_D0182 183 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 158340796 Nonpathogen - hypothetical protein AM1_D0155 1 None None None 158340791 Common - ABC transporter, permease protein AM1_D0150 46 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 158340760 Nonpathogen - hypothetical protein AM1_D0119 1 None None None 158340691 Nonpathogen - hypothetical protein AM1_D0048 1 None None None 158340684 Nonpathogen - hypothetical protein AM1_D0041 1 None None None 158340860 Common - phage integrase AM1_D0219 198 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 158340717 Common - IS1 transposase AM1_D0076 24 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 158340668 Nonpathogen - hypothetical protein AM1_D0025 3 None None None 158340757 Nonpathogen - hypothetical protein AM1_D0116 1 None None None 158340752 Nonpathogen - hypothetical protein AM1_D0111 1 None None None 158340710 Nonpathogen - hypothetical protein AM1_D0069 1 None None None 158340739 Nonpathogen - hypothetical protein AM1_D0098 1 None None None 158340772 Nonpathogen - hypothetical protein AM1_D0131 2 None None None 158340804 Common atpE ATP synthase C chain AM1_D0163 46 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 158340661 Nonpathogen - hypothetical protein AM1_D0018 1 None None None 158340708 Nonpathogen - hypothetical protein AM1_D0067 1 None None None 158340733 Nonpathogen - hypothetical protein AM1_D0092 1 None None None 158340880 Common - methyltransferase, putative AM1_D0243 124 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 158340775 Common - oxidoreductase alpha (molybdopterin) subunit AM1_D0134 177 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 158340728 Common topA DNA topoisomerase I AM1_D0087 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 158340740 Nonpathogen - hypothetical protein AM1_D0099 1 None None None 158340850 Common - hypothetical protein AM1_D0209 8 None None None 158340730 Common rpoD RNA polymerase sigma-70 factor, putative AM1_D0089 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 158340673 Nonpathogen - hypothetical protein AM1_D0030 1 None None None 158340906 Nonpathogen - hypothetical protein AM1_D0269 1 None None None 158340749 Nonpathogen - hypothetical protein AM1_D0108 1 None None None 158340885 Nonpathogen - hypothetical protein AM1_D0248 3 None None None 158340896 Nonpathogen - hypothetical protein AM1_D0259 1 None None None 158340912 Nonpathogen - hypothetical protein AM1_D0275 1 None None None 158340701 Nonpathogen - hypothetical protein AM1_D0060 1 None None None 158340790 Common - ABC transporter, ATP-binding protein AM1_D0149 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 158340793 Common - hypothetical protein AM1_D0152 6 None None None 158340799 Common atpC alternate F1F0 ATPase, F1 subunit epsilon AM1_D0158 20 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 158340857 Nonpathogen - hypothetical protein AM1_D0216 1 None None None 158340678 Nonpathogen - hypothetical protein AM1_D0035 1 None None None 158340660 Nonpathogen - hypothetical protein AM1_D0017 1 None None None 158340781 Nonpathogen - hypothetical protein AM1_D0140 1 None None None 158340831 Common - hypothetical protein AM1_D0190 33 COG1839 COG1839, Uncharacterized conserved protein Function unknown 158340824 Common - Ni-Fe hydrogenase small subunit AM1_D0183 51 COG1941 FrhG, Coenzyme F420-reducing hydrogenase, gamma subunit Energy production and conversion 158340787 Nonpathogen - hypothetical protein AM1_D0146 1 None None None 158340763 Nonpathogen - hypothetical protein AM1_D0122 1 None None None 158340836 Nonpathogen - hypothetical protein AM1_D0195 3 None None None 158340868 Common - transposase-associated ATP-binding protein, putative AM1_D0229 91 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 158340711 Nonpathogen - hypothetical protein AM1_D0070 1 None None None 158340687 Common - hypothetical protein AM1_D0044 3 None None None 158340773 Nonpathogen - hypothetical protein AM1_D0132 1 None None None 158340692 Nonpathogen - hypothetical protein AM1_D0049 6 None None None 158340778 Common - hypothetical protein AM1_D0137 32 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 158340887 Common - phospholipid/glycerol acyltransferase, putative AM1_D0250 25 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 158340856 Nonpathogen - hypothetical protein AM1_D0215 1 None None None 158340731 Nonpathogen - hypothetical protein AM1_D0090 1 None None None 158340753 Nonpathogen - hypothetical protein AM1_D0112 1 None None None 158340882 Common - cardiolipin synthetase AM1_D0245 151 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 158340657 Nonpathogen - hypothetical protein AM1_D0014 1 None None None 158340837 Common ubiA prenyltransferase, UbiA family AM1_D0196 57 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 158340644 Common - RNA-binding protein AM1_D0001 66 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 158340648 Nonpathogen - hypothetical protein AM1_D0005 1 None None None 158340812 Common - two-component transcriptional regulator/diguanylate cyclase (GGDEF) AM1_D0171 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 158340872 Nonpathogen - hypothetical protein AM1_D0233 1 None None None 158340718 Nonpathogen - hypothetical protein AM1_D0077 1 None None None 158340819 Common - hypothetical protein AM1_D0178 5 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 158340895 Common nifJ pyruvate-flavodoxin oxidoreductase AM1_D0258 111 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 158340736 Common - HAD-superfamily subfamily IIA hydrolase like protein, putative AM1_D0095 78 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 158340741 Nonpathogen - hypothetical protein AM1_D0100 1 None None None 158340667 Nonpathogen - hypothetical protein AM1_D0024 1 None None None 158340911 Nonpathogen - hypothetical protein AM1_D0274 5 None None None 158340879 Common - cell death suppressor protein Lls1-like protein AM1_D0242 7 None None None 158340704 Nonpathogen - hypothetical protein AM1_D0063 2 None None None 158340867 Common - transposase, putative AM1_D0228 48 None None None 158340724 Nonpathogen - hypothetical protein AM1_D0083 1 None None None 158340694 Common - hypothetical protein AM1_D0051 13 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 158340693 Nonpathogen - hypothetical protein AM1_D0050 1 None None None 158340877 Common - 3-beta hydroxysteroid dehydrogenase/isomerase AM1_D0238 107 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 158340797 Common ppsA phosphoenolpyruvate synthase AM1_D0156 236 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 158340817 Common hoxE proton-translocating NAD(P)H-quinone oxidoreductase, 24 kDa subunit, chain E AM1_D0176 157 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 158340810 Common - hypothetical protein AM1_D0169 8 None None None 158340840 Nonpathogen - hypothetical protein AM1_D0199 1 None None None 158340786 Nonpathogen - hypothetical protein AM1_D0145 1 None None None 158340765 Nonpathogen - hypothetical protein AM1_D0124 1 None None None 158340762 Nonpathogen - hypothetical protein AM1_D0121 1 None None None 158340656 Common - hypothetical protein AM1_D0013 29 COG1799 COG1799, Uncharacterized protein conserved in bacteria Function unknown 158340903 Nonpathogen - hypothetical protein AM1_D0266 2 None None None 158340838 Common hypE hydrogenase expression/formation protein HypE AM1_D0197 155 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 158340847 Nonpathogen - hypothetical protein AM1_D0206 3 COG3881 COG3881, Uncharacterized protein conserved in bacteria Function unknown 158340750 Nonpathogen - hypothetical protein AM1_D0109 1 None None None 158340779 Common psbU photosystem II 12 kDa extrinsic protein PsbU AM1_D0138 9 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 158340871 Nonpathogen - hypothetical protein AM1_D0232 1 None None None 158340914 Common - glyoxalase/bleomycin resistance protein/dioxygenase, putative AM1_D0277 9 None None None 158340703 Nonpathogen - hypothetical protein AM1_D0062 1 None None None 158340647 Nonpathogen - hypothetical protein AM1_D0004 2 None None None 158340751 Nonpathogen - hypothetical protein AM1_D0110 4 None None None 158340811 Nonpathogen - hypothetical protein AM1_D0170 1 None None None 158340855 Common - universal stress family protein AM1_D0214 10 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 158340686 Nonpathogen - hypothetical protein AM1_D0043 1 None None None 158340818 Common hoxF proton-translocating NAD(P)H-quinone oxidoreductase, chain F, putative AM1_D0177 167 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 158340719 Nonpathogen - hypothetical protein AM1_D0078 1 None None None 158340878 Common - hypothetical protein AM1_D0239 66 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 158340725 Nonpathogen - hypothetical protein AM1_D0084 1 None None None 158340890 Nonpathogen - hypothetical protein AM1_D0253 1 None None None 158340737 Common - hypothetical protein AM1_D0096 3 None None None 158340666 Common - hypothetical protein AM1_D0023 6 None None None 158340785 Common hypD hydrogenase expression/formation protein HypD AM1_D0144 109 COG0409 HypD, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 158340884 Common - DJ-1/PfpI family protein AM1_D0247 125 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 158340904 Nonpathogen - hypothetical protein AM1_D0267 1 None None None 158340816 Common - universal stress protein AM1_D0175 135 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 158340889 Common - YeeE/YedE family membrane protein, putative AM1_D0252 62 COG2391 COG2391, Predicted transporter component General function prediction only 158340655 Nonpathogen - hypothetical protein AM1_D0012 1 None None None 158340854 Nonpathogen - hypothetical protein AM1_D0213 1 None None None 158340859 Nonpathogen - hypothetical protein AM1_D0218 1 None None None 158340892 Common - rhodanese family protein AM1_D0255 154 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 158340764 Common - transcriptional regulator, Crp/Fnr family AM1_D0123 70 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 158340913 Common recA protein RecA AM1_D0276 214 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 158340834 Common hypA hydrogenase nickel insertion protein HypA AM1_D0193 95 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 158340820 Nonpathogen - hypothetical protein AM1_D0179 1 None None None 158340770 Common - hypothetical protein AM1_D0129 29 COG3812 COG3812, Uncharacterized protein conserved in bacteria Function unknown 158340695 Nonpathogen - hypothetical protein AM1_D0052 1 None None None 158340674 Common - peptidase M23 domain protein AM1_D0031 189 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 158340795 Common hypE hydrogenase expression/formation protein HypE AM1_D0154 149 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 158340827 Common - CBS domain containing membrane protein AM1_D0186 54 COG0517 COG0517, FOG: CBS domain General function prediction only 158340712 Nonpathogen - hypothetical protein AM1_D0071 1 None None None 158340876 Common ftsH ATP-dependent metalloprotease FtsH-like protein AM1_D0237 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 158340826 Common - hypothetical protein AM1_D0185 13 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 158340807 Nonpathogen - hypothetical protein AM1_D0166 6 None None None 158340746 Nonpathogen - helix-turn-helix domain protein AM1_D0105 2 COG3655 COG3655, Predicted transcriptional regulator Transcription 158340706 Nonpathogen - hypothetical protein AM1_D0065 1 None None None 158340665 Nonpathogen - hypothetical protein AM1_D0022 2 None None None 158340726 Nonpathogen - hypothetical protein AM1_D0085 2 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 158340663 Common - transposase AM1_D0020 26 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 158340841 Common glgP glycogen/starch/alpha-glucan phosphorylase AM1_D0200 144 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 158340782 Common pyrD dihydroorotate oxidase, putative AM1_D0141 84 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 158340713 Nonpathogen - hypothetical protein AM1_D0072 1 None None None 158340865 Common - transposase, Tn3 family AM1_D0226 52 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 158340898 Nonpathogen - hypothetical protein AM1_D0261 1 None None None 158340646 Common - exoribonuclease II AM1_D0003 192 COG0557 VacB, Exoribonuclease R Transcription 158340909 Common - hypothetical protein AM1_D0272 6 None None None 158340870 Nonpathogen - hypothetical protein AM1_D0231 1 COG1571 COG1571, Predicted DNA-binding protein containing a Zn-ribbon domain General function prediction only 158340844 Nonpathogen - hypothetical protein AM1_D0203 7 None None None 158340851 Common - hypothetical protein AM1_D0210 3 None None None 158340654 Common - two-component transcriptional regulator AM1_D0011 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 158340777 Nonpathogen - hypothetical protein AM1_D0136 1 None None None 158340853 Nonpathogen - hypothetical protein AM1_D0212 2 None None None 158340675 Nonpathogen - hypothetical protein AM1_D0032 1 None None None 158340649 Nonpathogen - hypothetical protein AM1_D0006 2 None None None 158340881 Common - endonuclease/exonuclease/phosphatase AM1_D0244 31 COG3021 COG3021, Uncharacterized protein conserved in bacteria Function unknown 158340825 Common - CBS domain containing membrane protein, putative AM1_D0184 138 COG0517 COG0517, FOG: CBS domain General function prediction only 158340699 Common - hypothetical protein AM1_D0058 6 None None None 158340901 Common - hypothetical protein AM1_D0264 16 None None None 158340771 Nonpathogen - hypothetical protein AM1_D0130 1 None None None 158340696 Nonpathogen - hypothetical protein AM1_D0053 1 None None None 158340809 Nonpathogen - hypothetical protein AM1_D0168 1 None None None 158340875 Common - hypothetical protein AM1_D0236 9 COG0716 FldA, Flavodoxins Energy production and conversion 158340768 Nonpathogen - hypothetical protein AM1_D0127 1 None None None 158340842 Common rpoD RNA polymerase sigma-70 factor AM1_D0201 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 158340689 Nonpathogen - hypothetical protein AM1_D0046 1 None None None 158340767 Nonpathogen - hypothetical protein AM1_D0126 1 None None None 158340720 Nonpathogen - hypothetical protein AM1_D0079 5 COG5635 COG5635, Predicted NTPase (NACHT family) Signal transduction mechanisms 158340784 Common pfkA 6-phosphofructokinase AM1_D0143 152 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 158340891 Common - sulfate permease AM1_D0254 161 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 158340794 Nonpathogen - hypothetical protein AM1_D0153 1 None None None 158340815 Common - nitroreductase family protein, putative AM1_D0174 79 COG0778 NfnB, Nitroreductase Energy production and conversion 158340835 Common - hydrogenase specific protease, putative AM1_D0194 18 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 158340802 Nonpathogen - hypothetical protein AM1_D0161 1 None None None 158340727 Common - TPR domain protein AM1_D0086 52 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 158340664 Nonpathogen - hypothetical protein AM1_D0021 3 None None None 158340758 Common - hypothetical protein AM1_D0117 6 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 158340747 Nonpathogen - hypothetical protein AM1_D0106 1 None None None 158340705 Nonpathogen - hypothetical protein AM1_D0064 1 None None None 158340662 Common - hypothetical protein AM1_D0019 6 COG0456 RimI, Acetyltransferases General function prediction only 158340849 Common groL chaperonin GroEL AM1_D0208 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 158340866 Nonpathogen - hypothetical protein AM1_D0227 1 None None None 158340801 Common - Na(+)/H(+) antiporter, putative AM1_D0160 56 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 158340916 Common - hypothetical protein AM1_D0279 10 None None None 158340776 Common - hypothetical protein AM1_D0135 21 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 158340897 Common xerC tyrosine recombinase XerC AM1_D0260 193 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 158340645 Nonpathogen - hypothetical protein AM1_D0002 1 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 158340808 Common atpG ATP synthase F1, gamma subunit AM1_D0167 204 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 158340681 Nonpathogen - hypothetical protein AM1_D0038 3 None None None