Pseudomonas putida F1, complete genome NC_009512 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 148549032 Common - hypothetical protein Pput_3826 1 None None None 148545545 Common - hypothetical protein Pput_0289 10 None None None 148549250 Common cobD cobalamin biosynthesis protein Pput_4044 150 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 148550439 Common - thioesterase superfamily protein Pput_5239 132 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 148547096 Common - major facilitator superfamily MFS_1 Pput_1865 25 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148549767 Common panC pantoate--beta-alanine ligase Pput_4565 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 148545632 Common - anti-FecI sigma factor, FecR Pput_0377 43 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 148550006 Common - aldo/keto reductase Pput_4804 101 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 148550442 Common - Transglycosylase-associated protein Pput_5242 48 COG2261 COG2261, Predicted membrane protein Function unknown 148548785 Common - VacJ family lipoprotein Pput_3579 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 148548693 Common - transcriptional regulator, GntR family Pput_3485 112 COG1802 GntR, Transcriptional regulators Transcription 148548561 Common - phage integrase family protein Pput_3353 135 COG0582 XerC, Integrase DNA replication, recombination, and repair 148549735 Common - OmpA/MotB domain protein Pput_4533 158 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 148550213 Common - transcriptional regulator, LysR family Pput_5011 192 COG0583 LysR, Transcriptional regulator Transcription 148545944 Common - homoserine dehydrogenase Pput_0698 217 COG0460 ThrA, Homoserine dehydrogenase Amino acid transport and metabolism 148547569 Common - methyl-accepting chemotaxis sensory transducer Pput_2348 117 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148545918 Common - Protein of unknown function DUF1780 Pput_0668 1 None None None 148549910 Common - precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit Pput_4708 105 COG2242 CobL, Precorrin-6B methylase 2 Coenzyme metabolism 148548530 Common - hypothetical protein Pput_3322 1 None None None 148546439 Common - Glutathione S-transferase, N-terminal domain Pput_1196 104 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148546904 Common - dihydrolipoamide acetyltransferase Pput_1666 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 148547876 Common - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Pput_2660 119 COG0388 COG0388, Predicted amidohydrolase General function prediction only 148550306 Common - 2-octaprenyl-6-methoxyphenyl hydroxylase Pput_5106 117 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 148545575 Common - Ricin B lectin Pput_0320 5 None None None 148548251 Common - short chain dehydrogenase Pput_3041 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 148547409 Common - acriflavin resistance protein Pput_2188 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 148548719 Common - putative monovalent cation/H+ antiporter subunit C Pput_3511 92 COG1006 MnhC, Multisubunit Na+/H+ antiporter, MnhC subunit Inorganic ion transport and metabolism 148546304 Common - 6-phosphogluconolactonase Pput_1061 110 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 148550183 Common - RNA polymerase factor sigma-32 Pput_4981 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 148550348 Nonpathogen - hypothetical protein Pput_5148 1 None None None 148549883 Common - rod shape-determining protein RodA Pput_4681 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 148549963 Common - extracellular solute-binding protein, family 1 Pput_4761 114 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 148547071 Common - hypothetical protein Pput_1836 162 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 148550201 Common - formamidopyrimidine-DNA glycosylase Pput_4999 180 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 148546692 Common - Transketolase, central region Pput_1452 168 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 148549878 Common lipB lipoyltransferase Pput_4676 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 148546234 Common - RNA polymerase factor sigma-54 Pput_0991 145 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 148548238 Common - membrane protein-like protein Pput_3028 46 COG2323 COG2323, Predicted membrane protein Function unknown 148547505 Common - electron transport protein SCO1/SenC Pput_2284 46 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 148548677 Common clpP ATP-dependent Clp protease proteolytic subunit Pput_3469 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 148549302 Common - hypothetical protein Pput_4096 16 None None None 148546114 Common - serine O-acetyltransferase Pput_0870 192 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 148545581 Nonpathogen - hypothetical protein Pput_0326 1 None None None 148546708 Common flgF flagellar basal body rod protein FlgF Pput_1469 123 COG4787 FlgF, Flagellar basal body rod protein Cell motility and secretion 148546748 Common fliN flagellar motor switch protein Pput_1509 121 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 148547136 Common - hypothetical protein Pput_1906 9 COG5455 COG5455, Predicted integral membrane protein Function unknown 148546804 Common - Ion transport protein Pput_1566 95 COG1226 Kch, Kef-type K+ transport systems, predicted NAD-binding component Inorganic ion transport and metabolism 148546741 Common fliJ flagellar biosynthesis chaperone Pput_1502 43 COG2882 FliJ, Flagellar biosynthesis chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 148546219 Common - Maf-like protein Pput_0976 197 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 148547190 Common - ABC-type metal ion transport system periplasmic component/surface adhesin-like protein Pput_1965 12 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 148550049 Common - sodium/hydrogen exchanger Pput_4847 151 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 148549936 Common - Ferritin, Dps family protein Pput_4734 115 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 148549214 Nonpathogen - hypothetical protein Pput_4008 1 None None None 148547740 Nonpathogen - hypothetical protein Pput_2523 1 None None None 148547015 Common - acyl-CoA synthetase Pput_1778 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148548951 Common - short-chain dehydrogenase/reductase SDR Pput_3745 236 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 148549174 Common - carbon storage regulator, CsrA Pput_3968 5 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 148548306 Common - ABC-2 type transporter Pput_3096 104 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 148545936 Common - polar amino acid ABC transporter, inner membrane subunit Pput_0690 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 148549699 Common - Trans-2-enoyl-CoA reductase (NAD(+)) Pput_4497 26 COG3007 COG3007, Uncharacterized paraquat-inducible protein B Function unknown 148546133 Common - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Pput_0889 200 COG0388 COG0388, Predicted amidohydrolase General function prediction only 148550199 Common coaD phosphopantetheine adenylyltransferase Pput_4997 209 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 148549179 Common - hypothetical protein Pput_3973 4 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 148545587 Common - protein of unknown function DUF224, cysteine-rich region domain protein Pput_0332 84 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 148549925 Common - ABC transporter related Pput_4723 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 148549132 Common - glycosyl transferase, family 2 Pput_3926 188 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 148549902 Common - multiple antibiotic resistance (MarC)-related protein Pput_4700 158 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 148549382 Common lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase Pput_4176 163 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 148546917 Common - protein of unknown function DUF323 Pput_1679 96 COG1262 COG1262, Uncharacterized conserved protein Function unknown 148545597 Common - methyl-accepting chemotaxis sensory transducer Pput_0342 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148549184 Common - Substrate-binding region of ABC-type glycine betaine transport system Pput_3978 69 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 148547736 Common - diguanylate cyclase Pput_2519 176 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 148547659 Nonpathogen - hypothetical protein Pput_2439 1 None None None 148546956 Common - extracellular solute-binding protein, family 5 Pput_1718 174 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 148550174 Common - hypothetical protein Pput_4972 13 None None None 148545674 Common dnaG DNA primase Pput_0422 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 148546492 Common - Biopolymer transport, TolR Pput_1249 130 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 148549582 Common - Glutathione S-transferase, N-terminal domain Pput_4377 64 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148548331 Common - major facilitator superfamily MFS_1 Pput_3121 176 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148550453 Common - GCN5-related N-acetyltransferase Pput_5253 61 COG0456 RimI, Acetyltransferases General function prediction only 148549374 Nonpathogen - hypothetical protein Pput_4168 1 None None None 148550491 Common - D-fructose-6-phosphate amidotransferase Pput_5291 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 148546853 Common - cytochrome c oxidase, cbb3-type, subunit III Pput_1615 89 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 148549205 Common - Quinone oxidoreductase putative, PIG3 Pput_3999 169 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 148546012 Common - hypothetical protein Pput_0766 12 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 148549085 Common - major facilitator superfamily MFS_1 Pput_3879 76 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148547357 Common bcsA cellulose synthase catalytic subunit Pput_2136 124 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 148546526 Common - aldehyde dehydrogenase Pput_1283 199 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148545801 Common - bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein Pput_0551 226 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 148545876 Common - hypothetical protein Pput_0626 1 None None None 148546038 Common - protein of unknown function DUF1302 Pput_0792 18 COG4079 COG4079, Uncharacterized protein conserved in archaea Function unknown 148546596 Common - carboxylate/amino acid/amine transporter Pput_1354 23 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 148549476 Common - hypothetical protein Pput_4270 59 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 148548680 Common - Methylenetetrahydrofolate dehydrogenase (NADP(+)) Pput_3472 223 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 148545729 Common rplA 50S ribosomal protein L1 Pput_0477 245 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 148548119 Common - hypothetical protein Pput_2907 3 None None None 148547364 Common - ABC-type branched-chain amino acid transport systems periplasmic component-like protein Pput_2143 90 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 148547453 Common - hypothetical protein Pput_2232 1 None None None 148547994 Common - GABA permease Pput_2780 179 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 148547425 Common - Carbohydrate-selective porin OprB Pput_2204 20 COG3659 OprB, Carbohydrate-selective porin Cell envelope biogenesis, outer membrane 148547747 Common - transcriptional activator, TenA family Pput_2530 74 COG0819 TenA, Putative transcription activator Transcription 148545514 Common - glutamate--cysteine ligase Pput_0258 58 COG2918 GshA, Gamma-glutamylcysteine synthetase Coenzyme metabolism 148545736 Common - elongation factor G Pput_0484 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 148545290 Common - hypothetical protein Pput_0033 8 None None None 148549608 Common - Glutathione S-transferase, N-terminal domain Pput_4404 106 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148545401 Common - DSBA oxidoreductase Pput_0144 69 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 148548092 Common - Rieske (2Fe-2S) domain protein Pput_2879 78 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 148546550 Common - glutamine amidotransferase, class-II Pput_1308 72 COG0121 COG0121, Predicted glutamine amidotransferase General function prediction only 148548229 Common - Cyclopropane-fatty-acyl-phospholipid synthase Pput_3019 126 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 148549361 Common - peptidase M23B Pput_4155 190 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 148546716 Common - hypothetical protein Pput_1477 40 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 148546155 Common - Biotin carboxylase-like protein Pput_0912 63 COG0439 AccC, Biotin carboxylase Lipid metabolism 148546726 Common - hypothetical protein Pput_1487 10 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 148545463 Common - argininosuccinate lyase Pput_0206 233 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 148548899 Common - acyl-CoA dehydrogenase domain protein Pput_3693 149 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148545920 Common - membrane protein-like protein Pput_0670 20 COG3235 COG3235, Predicted membrane protein Function unknown 148547644 Common - efflux transporter, RND family, MFP subunit Pput_2424 125 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148547245 Common - major facilitator superfamily MFS_1 Pput_2023 68 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148545384 Common - protoheme IX farnesyltransferase Pput_0127 166 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 148546732 Common - hypothetical protein Pput_1493 1 None None None 148548285 Common - hypothetical protein Pput_3075 4 None None None 148546886 Common - hypothetical protein Pput_1648 12 None None None 148545272 Common - copper resistance B precursor Pput_0013 45 COG3667 PcoB, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 148546931 Common - 3-oxoacyl-(acyl carrier protein) synthase I Pput_1693 209 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148547918 Common - putative transcriptional regulator, MerR family Pput_2702 120 COG0789 SoxR, Predicted transcriptional regulators Transcription 148545475 Common - Small-conductance mechanosensitive channel-like protein Pput_0218 9 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 148545615 Common - Glutathione S-transferase, N-terminal domain Pput_0360 74 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148547336 Common - hypothetical protein Pput_2115 4 None None None 148549471 Common - hypothetical protein Pput_4265 5 None None None 148547219 Common - lactoylglutathione lyase Pput_1997 119 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 148548775 Common - hypothetical protein Pput_3568 5 None None None 148550256 Common - threonine dehydratase Pput_5056 222 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 148548449 Common - protein of unknown function DUF1654 Pput_3241 1 None None None 148549295 Common - CinA domain protein Pput_4089 191 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 148549633 Common - molybdopterin biosynthesis MoaE protein Pput_4431 153 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 148547405 Common - major facilitator superfamily MFS_1 Pput_2184 213 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148546028 Common - hypothetical protein Pput_0782 1 None None None 148545408 Common - transport-associated Pput_0151 45 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 148547434 Common - Auxin Efflux Carrier Pput_2213 54 COG0679 COG0679, Predicted permeases General function prediction only 148546312 Common - protein of unknown function DUF81 Pput_1069 18 COG0730 COG0730, Predicted permeases General function prediction only 148547461 Common - ornithine cyclodeaminase Pput_2240 86 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 148550042 Common - S-adenosylmethionine synthetase Pput_4840 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 148548845 Common - PAS/PAC sensor hybrid histidine kinase Pput_3639 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148545724 Common - hypothetical protein Pput_0472 1 None None None 148546019 Common - uracil-xanthine permease Pput_0773 122 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 148548435 Common - putative cold-shock DNA-binding domain protein Pput_3227 179 COG1278 CspC, Cold shock proteins Transcription 148547563 Common - integral membrane sensor signal transduction histidine kinase Pput_2342 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148545269 Common - hypothetical protein Pput_0010 1 None None None 148549854 Common - putative transcriptional regulator, AsnC family Pput_4652 149 COG1522 Lrp, Transcriptional regulators Transcription 148549642 Common - Sel1 domain protein repeat-containing protein Pput_4440 7 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 148547796 Common - glycosyl transferase, family 2 Pput_2579 133 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 148548984 Nonpathogen - hypothetical protein Pput_3778 1 None None None 148548813 Common - hypothetical protein Pput_3607 1 None None None 148548870 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Pput_3664 65 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148549543 Common - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family Pput_4338 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 148550472 Common cls cardiolipin synthetase Pput_5272 146 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 148548586 Common - phage putative head morphogenesis protein, SPP1 gp7 family Pput_3378 11 None None None 148546906 Common sucC succinyl-CoA synthetase subunit beta Pput_1668 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 148548624 Nonpathogen - hypothetical protein Pput_3416 1 None None None 148550027 Common - ATP-dependent RNA helicase DbpA Pput_4825 234 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 148546775 Common - hypothetical protein Pput_1536 8 None None None 148548703 Common - Phosphoglycerate mutase Pput_3495 20 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 148545550 Common - hypothetical protein Pput_0294 1 None None None 148549715 Common - cytochrome bd ubiquinol oxidase, subunit I Pput_4513 163 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 148549871 Common leuS leucyl-tRNA synthetase Pput_4669 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 148547064 Common - cell divisionFtsK/SpoIIIE Pput_1829 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 148547782 Common - helix-turn-helix- domain containing protein, AraC type Pput_2565 59 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148548166 Common - hypothetical protein Pput_2956 23 None None None 148548746 Common - glucose sorbosone dehydrogenase Pput_3539 121 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 148546506 Common - SirA family protein Pput_1263 91 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 148547009 Common - putative prophage repressor Pput_1772 13 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 148548748 Common - agmatinase Pput_3541 155 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 148549483 Common - Pyrrolo-quinoline quinone Pput_4277 59 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 148545398 Common - GTPase EngB Pput_0141 177 COG0218 COG0218, Predicted GTPase General function prediction only 148547467 Common - hypothetical protein Pput_2246 2 None None None 148545440 Common - periplasmic protein-like protein Pput_0183 37 COG3672 COG3672, Predicted periplasmic protein Function unknown 148546272 Common - hypothetical protein Pput_1029 62 COG3220 COG3220, Uncharacterized protein conserved in bacteria Function unknown 148547899 Nonpathogen - hypothetical protein Pput_2683 1 None None None 148545391 Common - ABC-3 protein Pput_0134 159 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 148548089 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Pput_2876 23 COG2514 COG2514, Predicted ring-cleavage extradiol dioxygenase General function prediction only 148547938 Common - protein of unknown function DUF1348 Pput_2722 49 COG3558 COG3558, Uncharacterized protein conserved in bacteria Function unknown 148546102 Nonpathogen - hypothetical protein Pput_0858 2 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 148545907 Common - inner-membrane translocator Pput_0657 145 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 148546095 Common - phosphonate ABC transporter, periplasmic phosphonate-binding protein Pput_0851 96 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 148548291 Common - pyrroloquinoline quinone biosynthesis protein PqqD Pput_3081 13 None None None 148545611 Common - protein of unknown function DUF785 Pput_0356 35 COG4067 COG4067, Uncharacterized protein conserved in archaea Posttranslational modification, protein turnover, chaperones 148547090 Common - isochorismatase hydrolase Pput_1858 83 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 148546671 Common - polar amino acid ABC transporter, inner membrane subunit Pput_1431 173 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 148548266 Common - transcriptional regulator, LysR family Pput_3056 182 COG0583 LysR, Transcriptional regulator Transcription 148550033 Common - protein of unknown function DUF45 Pput_4831 41 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 148548653 Common - 2-dehydropantoate 2-reductase Pput_3445 82 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 148547057 Common - isocitrate dehydrogenase, NADP-dependent Pput_1822 222 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 148549241 Common - major facilitator superfamily MFS_1 Pput_4035 61 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148549396 Common - Na+/H+ antiporter Pput_4190 92 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 148545278 Nonpathogen - hypothetical protein Pput_0019 1 None None None 148549333 Common - VRR-NUC domain protein Pput_4127 7 None None None 148548184 Common - Beta-ketoacyl synthase-like protein Pput_2974 13 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148546866 Common - Redoxin domain protein Pput_1628 164 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 148550104 Common - proline iminopeptidase Pput_4902 131 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148550469 Common - cobalamin synthesis protein, P47K Pput_5269 129 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 148548070 Common - transcriptional regulator, LysR family Pput_2856 181 COG0583 LysR, Transcriptional regulator Transcription 148549029 Common - hypothetical protein Pput_3823 3 None None None 148549025 Common - ABC-2 type transporter Pput_3819 136 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 148549094 Common folE GTP cyclohydrolase I Pput_3888 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 148549248 Common - cobyric acid synthase Pput_4042 152 COG1492 CobQ, Cobyric acid synthase Coenzyme metabolism 148548132 Nonpathogen - hypothetical protein Pput_2921 1 None None None 148545310 Nonpathogen - hypothetical protein Pput_0053 1 None None None 148547522 Common - GAF modulated sigma54 specific transcriptional regulator, Fis family Pput_2301 175 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 148547212 Common - protein of unknown function DUF1654 Pput_1990 1 None None None 148550502 Common - F0F1 ATP synthase subunit I Pput_5302 22 COG3312 AtpI, F0F1-type ATP synthase, subunit I Energy production and conversion 148547828 Common - amidohydrolase Pput_2611 170 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 148545895 Common lspA lipoprotein signal peptidase Pput_0645 146 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148550509 Common - putative inner membrane protein translocase component YidC Pput_5309 213 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 148549448 Common - HicB family protein Pput_4242 30 COG4226 HicB, Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters Function unknown 148548246 Common - protein tyrosine phosphatase Pput_3036 123 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 148550301 Common gcvT glycine cleavage system aminomethyltransferase T Pput_5101 179 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 148545820 Nonpathogen - Hemerythrin HHE cation binding domain protein Pput_0570 2 COG3945 COG3945, Uncharacterized conserved protein Function unknown 148548665 Common - Lytic transglycosylase, catalytic Pput_3457 76 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 148549569 Common groES co-chaperonin GroES Pput_4364 216 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 148548928 Common - hypothetical protein Pput_3722 1 None None None 148547308 Common - protein of unknown function DUF1185 Pput_2086 23 None None None 148549526 Common - integral membrane sensor signal transduction histidine kinase Pput_4321 221 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 148547447 Common - drug resistance transporter, EmrB/QacA subfamily Pput_2226 194 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148548796 Common - glycerophosphoryl diester phosphodiesterase Pput_3590 153 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 148548087 Common - acetaldehyde dehydrogenase Pput_2874 37 COG4569 MhpF, Acetaldehyde dehydrogenase (acetylating) Secondary metabolites biosynthesis, transport, and catabolism 148546919 Common - cyclic peptide transporter Pput_1681 247 COG4615 PvdE, ABC-type siderophore export system, fused ATPase and permease components Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism 148546266 Common - glycine cleavage system T protein Pput_1023 178 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 148548751 Common - TonB-dependent siderophore receptor Pput_3544 63 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 148548793 Common - lipoprotein releasing system, ATP-binding protein Pput_3587 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 148545929 Common - hypothetical protein Pput_0682 10 None None None 148546084 Common - aminotransferase Pput_0840 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 148550417 Common - TonB family protein Pput_5217 21 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 148547635 Common - transcriptional regulator, LysR family Pput_2414 180 COG0583 LysR, Transcriptional regulator Transcription 148548080 Common - efflux transporter, RND family, MFP subunit Pput_2867 153 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148545297 Common - cation diffusion facilitator family transporter Pput_0040 211 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 148549753 Common - ABC transporter related Pput_4551 249 COG4559 COG4559, ABC-type hemin transport system, ATPase component Inorganic ion transport and metabolism 148547050 Common - GCN5-related N-acetyltransferase Pput_1815 102 COG2153 ElaA, Predicted acyltransferase General function prediction only 148549362 Common pcm protein-L-isoaspartate O-methyltransferase Pput_4156 156 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 148547415 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Pput_2194 41 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148548615 Nonpathogen - hypothetical protein Pput_3407 1 None None None 148546222 Common - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Pput_0979 187 COG0388 COG0388, Predicted amidohydrolase General function prediction only 148547108 Common - extracellular solute-binding protein, family 5 Pput_1878 195 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 148546062 Common - 1-phosphofructokinase Pput_0817 104 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 148546347 Common - transcriptional regulator, LysR family Pput_1104 174 COG0583 LysR, Transcriptional regulator Transcription 148547474 Common - hypothetical protein Pput_2253 8 None None None 148548502 Common - Ferric reductase domain protein transmembrane component, N-terminal domain Pput_3294 8 None None None 148549560 Common - conserved hypothetical protein 374 Pput_4355 20 COG0392 COG0392, Predicted integral membrane protein Function unknown 148548418 Nonpathogen - hypothetical protein Pput_3210 1 None None None 148549313 Common - hypothetical protein Pput_4107 4 None None None 148548217 Common - Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein Pput_3007 72 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 148549166 Common - hypothetical protein Pput_3960 9 None None None 148547282 Common - transcriptional regulator, LysR family Pput_2060 98 COG0583 LysR, Transcriptional regulator Transcription 148549010 Common - protein of unknown function DUF177 Pput_3804 41 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 148547208 Common - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Pput_1986 224 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 148549983 Common - flagellar motor protein MotA Pput_4781 105 COG1291 MotA, Flagellar motor component Cell motility and secretion 148547776 Common - TonB-dependent siderophore receptor Pput_2559 120 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 148548758 Common - hypothetical protein Pput_3551 20 None None None 148548654 Common - phospho-2-dehydro-3-heoxyheptonate aldolase Pput_3446 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 148547317 Common - ABC transporter related Pput_2096 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 148550223 Common - 3-isopropylmalate dehydratase, small subunit Pput_5021 209 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 148546655 Common - putative transcriptional regulator Pput_1415 149 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 148546897 Common - lipid-binding START domain protein Pput_1659 15 None None None 148550192 Common - alpha/beta hydrolase fold Pput_4990 71 COG0429 COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 148547224 Common - multi-sensor hybrid histidine kinase Pput_2002 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148545315 Common - efflux transporter, RND family, MFP subunit Pput_0058 160 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148547398 Common - polar amino acid ABC transporter, inner membrane subunit Pput_2177 171 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 148547296 Common - outer membrane porin Pput_2074 8 None None None 148546441 Common - transcriptional regulator, LysR family Pput_1198 112 COG0583 LysR, Transcriptional regulator Transcription 148549328 Common - hypothetical protein Pput_4122 1 None None None 148547481 Common - 5-oxoprolinase (ATP-hydrolyzing) Pput_2260 118 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148546241 Common - protein of unknown function DUF140 Pput_0998 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 148548298 Common - cytochrome c, class I Pput_3088 14 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 148545346 Common - coproporphyrinogen III oxidase Pput_0089 112 COG0408 HemF, Coproporphyrinogen III oxidase Coenzyme metabolism 148549702 Common - methylenetetrahydrofolate reductase Pput_4500 10 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 148548029 Common - hypothetical protein Pput_2815 1 None None None 148549979 Common - protein of unknown function UPF0126 Pput_4777 133 COG2860 COG2860, Predicted membrane protein Function unknown 148549501 Common - L-aspartate oxidase Pput_4295 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 148547603 Common - Gluconate 2-dehydrogenase Pput_2382 230 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 148548315 Common - transcriptional regulator, LysR family Pput_3105 89 COG0583 LysR, Transcriptional regulator Transcription 148547869 Common - acetyl-CoA synthetase Pput_2653 196 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 148546249 Common - histidinol-phosphate aminotransferase Pput_1006 231 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 148548220 Common - GCN5-related N-acetyltransferase Pput_3010 14 COG0456 RimI, Acetyltransferases General function prediction only 148547762 Common - transcriptional regulator, LysR family Pput_2545 138 COG0583 LysR, Transcriptional regulator Transcription 148545812 Common - Polyprenyl synthetase Pput_0562 241 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 148547107 Common - Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein Pput_1877 111 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 148549276 Common - protein of unknown function DUF306, Meta and HslJ Pput_4070 19 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 148549356 Common - phage integrase family protein Pput_4150 71 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 148546699 Common - anti-sigma-28 factor, FlgM Pput_1459 19 COG2747 FlgM, Negative regulator of flagellin synthesis (anti-sigma28 factor) Transcription / Cell motility and secretion / Intracellular trafficking and secretion 148549263 Common - glucose-methanol-choline oxidoreductase Pput_4057 77 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 148549180 Common - hypothetical protein Pput_3974 3 None None None 148545991 Common - isochorismatase hydrolase Pput_0745 81 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 148548378 Common - transcriptional regulator, LysR family Pput_3168 192 COG0583 LysR, Transcriptional regulator Transcription 148550067 Common - response regulator receiver protein Pput_4865 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148545957 Common - ATP-dependent protease-like protein Pput_0711 108 COG1067 LonB, Predicted ATP-dependent protease Posttranslational modification, protein turnover, chaperones 148548522 Common - hypothetical protein Pput_3314 1 None None None 148549771 Common - protein of unknown function DUF748 Pput_4569 45 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 148548422 Common - HNH endonuclease Pput_3214 23 COG3183 COG3183, Predicted restriction endonuclease Defense mechanisms 148547680 Common - GCN5-related N-acetyltransferase Pput_2463 76 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 148548442 Common - Monosaccharide-transporting ATPase Pput_3234 109 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 148548139 Common - hypothetical protein Pput_2929 21 None None None 148547377 Common - transcriptional regulator, LysR family Pput_2156 174 COG0583 LysR, Transcriptional regulator Transcription 148547087 Common - Glutathione S-transferase, N-terminal domain Pput_1854 99 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148547769 Common - oxidoreductase FAD/NAD(P)-binding domain protein Pput_2552 143 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 148545963 Common - alkylphosphonate utilization operon protein PhnA Pput_0717 86 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 148549974 Common mutL DNA mismatch repair protein Pput_4772 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 148548047 Common - hypothetical protein Pput_2833 1 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 148547586 Common - Curlin associated repeat protein Pput_2365 17 None None None 148545493 Common - Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein Pput_0237 68 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 148547943 Common - amidase Pput_2727 218 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 148547155 Common - putative transcriptional regulator, MerR family Pput_1930 128 COG0789 SoxR, Predicted transcriptional regulators Transcription 148547823 Common - short-chain dehydrogenase/reductase SDR Pput_2606 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148546327 Common - protein of unknown function DUF839 Pput_1084 65 COG3211 PhoX, Predicted phosphatase General function prediction only 148547757 Common - major facilitator superfamily MFS_1 Pput_2540 140 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148546425 Common - hypothetical protein Pput_1182 1 None None None 161936354 Common - aldehyde dehydrogenase Pput_4240 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148548205 Common - ABC-type sugar transport system periplasmic component-like protein Pput_2995 54 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 148546127 Common ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Pput_0883 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 148547431 Common - transcriptional regulator, AraC family Pput_2210 101 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148548982 Common - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Pput_3776 198 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148547002 Common - helix-turn-helix domain protein Pput_1764 9 None None None 148546733 Common - sigma54 specific transcriptional regulator, Fis family Pput_1494 171 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148547080 Common - Ribulose-bisphosphate carboxylase Pput_1846 67 COG1850 RbcL, Ribulose 1,5-bisphosphate carboxylase, large subunit Carbohydrate transport and metabolism 148550241 Nonpathogen - hypothetical protein Pput_5041 2 None None None 148548723 Common - putative monovalent cation/H+ antiporter subunit G Pput_3515 42 COG1320 MnhG, Multisubunit Na+/H+ antiporter, MnhG subunit Inorganic ion transport and metabolism 148548509 Common - leucine-rich repeat protein Pput_3301 18 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 148550381 Common - putative transcriptional regulator, AsnC family Pput_5181 164 COG1522 Lrp, Transcriptional regulators Transcription 148547049 Common - DNA topoisomerase III Pput_1814 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 148549045 Common - protein of unknown function DUF815 Pput_3839 89 COG2607 COG2607, Predicted ATPase (AAA+ superfamily) General function prediction only 148549535 Nonpathogen - hypothetical protein Pput_4330 1 None None None 148547834 Common - hypothetical protein Pput_2617 1 None None None 148546144 Common - Substrate-binding region of ABC-type glycine betaine transport system Pput_0900 90 COG1732 OpuBC, Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) Cell envelope biogenesis, outer membrane 148547906 Common - 3-dehydroquinate dehydratase Pput_2690 170 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 148549635 Common moaC molybdenum cofactor biosynthesis protein C Pput_4433 195 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 148548733 Common - AMP-dependent synthetase and ligase Pput_3525 218 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 148549594 Common murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase Pput_4389 208 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 148548464 Common - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Pput_3256 221 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 148550145 Common - Cobyrinic acid a,c-diamide synthase Pput_4943 214 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 148549742 Common - putative sulfite oxidase subunit YedY Pput_4540 120 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 148549493 Common era GTP-binding protein Era Pput_4287 239 COG1159 Era, GTPase General function prediction only 148550478 Common - short-chain dehydrogenase/reductase SDR Pput_5278 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148547540 Common - hypothetical protein Pput_2319 1 None None None 148547266 Common - Ribosyldihydronicotinamide dehydrogenase (quinone) Pput_2044 77 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 148550508 Common trmE tRNA modification GTPase TrmE Pput_5308 224 COG0486 ThdF, Predicted GTPase General function prediction only 148549924 Common - ABC transporter related Pput_4722 249 COG4674 COG4674, Uncharacterized ABC-type transport system, ATPase component General function prediction only 148545731 Common rplL 50S ribosomal protein L7/L12 Pput_0479 213 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 148546782 Common - Heme exporter protein D (CcmD) Pput_1543 6 COG3114 CcmD, Heme exporter protein D Intracellular trafficking and secretion 148549751 Common - TfoX, C-terminal domain protein Pput_4549 10 COG3070 TfoX, Regulator of competence-specific genes Transcription 148546077 Common - nitric oxide dioxygenase Pput_0832 131 COG1017 Hmp, Hemoglobin-like flavoprotein Energy production and conversion 148550128 Common - preprotein translocase subunit SecB Pput_4926 107 COG1952 SecB, Preprotein translocase subunit SecB Intracellular trafficking and secretion 148547859 Common - PEBP family protein Pput_2643 115 COG1881 COG1881, Phospholipid-binding protein General function prediction only 148549524 Common - protein of unknown function DUF477 Pput_4319 26 COG3762 COG3762, Predicted membrane protein Function unknown 148546047 Common - peptidylprolyl isomerase, FKBP-type Pput_0801 130 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 148548787 Common - hypothetical protein Pput_3581 1 None None None 148547105 Common - NAD-dependent epimerase/dehydratase Pput_1875 122 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 148546341 Common - transcriptional regulator, PadR-like family Pput_1098 56 COG1695 COG1695, Predicted transcriptional regulators Transcription 148547892 Common - Taurine dioxygenase Pput_2676 47 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 148549193 Common minE cell division topological specificity factor MinE Pput_3987 87 COG0851 MinE, Septum formation topological specificity factor Cell division and chromosome partitioning 148545539 Common - TonB-dependent siderophore receptor Pput_0283 114 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 148549004 Common - 3-oxoacyl-(acyl carrier protein) synthase II Pput_3798 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148550116 Common - fructose-1,6-bisphosphatase Pput_4914 108 COG0158 Fbp, Fructose-1,6-bisphosphatase Carbohydrate transport and metabolism 148549344 Common - hypothetical protein Pput_4138 2 None None None 148549670 Common - hypothetical protein Pput_4468 1 None None None 148546177 Common - hypothetical protein Pput_0934 19 None None None 148548580 Common - hypothetical protein Pput_3372 7 None None None 148547554 Common - histidine kinase Pput_2333 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148546403 Common - integral membrane protein-like protein Pput_1160 20 COG5615 COG5615, Predicted integral membrane protein Function unknown 148546059 Common - hydrolase, TatD family Pput_0814 233 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 148547667 Common - sodium/hydrogen exchanger Pput_2449 49 COG3263 COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain Inorganic ion transport and metabolism 148547187 Common - Thioesterase Pput_1962 48 COG3208 GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 148547712 Common - Endonuclease/exonuclease/phosphatase Pput_2495 68 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 148548960 Common - pili assembly chaperone Pput_3754 25 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 148550163 Common - primosome assembly protein PriA Pput_4961 213 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 148549664 Common - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pput_4462 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 148545341 Common def peptide deformylase Pput_0084 214 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 148545423 Common - glutathione-dependent formaldehyde-activating, GFA Pput_0166 66 COG3791 COG3791, Uncharacterized conserved protein Function unknown 148549063 Common - hypothetical protein Pput_3857 23 COG4394 COG4394, Uncharacterized protein conserved in bacteria Function unknown 148545942 Common - threonine synthase Pput_0696 130 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 148547780 Common - aldehyde dehydrogenase Pput_2563 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148549947 Common - Extracellular ligand-binding receptor Pput_4745 154 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 148550392 Common rpmB 50S ribosomal protein L28 Pput_5192 169 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 148548555 Common - CBS domain containing protein Pput_3347 90 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 148549669 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Pput_4467 131 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148546674 Common argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein Pput_1434 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 148545815 Common - Zeta toxin family protein Pput_0565 4 None None None 148545976 Common - Peptidase M15A Pput_0730 5 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 148547153 Common - hypothetical protein Pput_1928 1 None None None 148549740 Common - exodeoxyribonuclease V, gamma subunit Pput_4538 65 COG1330 RecC, Exonuclease V gamma subunit DNA replication, recombination, and repair 148545361 Common - OsmC family protein Pput_0104 74 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 148547682 Common - phosphoribosyltransferase Pput_2465 67 COG1926 COG1926, Predicted phosphoribosyltransferases General function prediction only 148547423 Common - protein of unknown function DUF1028 Pput_2202 38 COG3342 COG3342, Uncharacterized conserved protein Function unknown 148545351 Common - transcriptional regulator, LysR family Pput_0094 164 COG0583 LysR, Transcriptional regulator Transcription 148550432 Common - response regulator receiver protein Pput_5232 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148546274 Common - RNA polymerase sigma factor Pput_1031 125 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148548518 Common - AzlC family protein Pput_3310 94 COG1296 AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) Amino acid transport and metabolism 148545795 Common - thioredoxin Pput_0545 232 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 148549913 Common - protein of unknown function DUF107 Pput_4711 69 COG1585 COG1585, Membrane protein implicated in regulation of membrane protease activity Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 148547945 Common - Nitrile hydratase Pput_2729 18 None None None 148546517 Common - SH3, type 3 domain protein Pput_1274 8 COG4520 LipA, Surface antigen Cell envelope biogenesis, outer membrane 148546764 Common - Cobyrinic acid a,c-diamide synthase Pput_1525 154 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 148549143 Common - glycosyl transferase, family 4 Pput_3937 209 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 148549637 Common - polysaccharide deacetylase Pput_4435 13 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 148549953 Common - hypothetical protein Pput_4751 1 None None None 148549117 Nonpathogen - hypothetical protein Pput_3911 1 COG3173 COG3173, Predicted aminoglycoside phosphotransferase General function prediction only 148547252 Common - secreted hydrolase-like protein Pput_2030 50 COG5621 COG5621, Predicted secreted hydrolase General function prediction only 148546996 Common - amino acid permease-associated region Pput_1758 145 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 148549424 Common - hypothetical protein Pput_4218 6 None None None 148547803 Common - UDP-glucose 4-epimerase Pput_2586 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 148548971 Common - acetyl-CoA carboxylase subunit beta Pput_3765 218 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 148549517 Common - diguanylate cyclase Pput_4311 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 148549125 Common - hypothetical protein Pput_3919 26 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 148546050 Common - methyl-accepting chemotaxis sensory transducer Pput_0804 143 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148547147 Common - hypothetical protein Pput_1920 1 None None None 148549950 Common - Azurin Pput_4748 20 COG3241 COG3241, Azurin Energy production and conversion 148547180 Common - extracellular solute-binding protein, family 1 Pput_1955 66 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 148549115 Common - 3-deoxy-D-manno-octulosonate cytidylyltransferase Pput_3909 154 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 148545985 Common - methylated-DNA--protein-cysteine methyltransferase Pput_0739 177 COG2169 Ada, Adenosine deaminase Nucleotide transport and metabolism 148546456 Common - 4'-phosphopantetheinyl transferase Pput_1213 37 COG2977 EntD, Phosphopantetheinyl transferase component of siderophore synthetase Secondary metabolites biosynthesis, transport, and catabolism 148549430 Common - hypothetical protein Pput_4224 1 None None None 148545658 Common - pyrroloquinoline quinone biosynthesis protein PqqC Pput_0403 39 COG5424 COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C Coenzyme metabolism 148547940 Common - Phenylacetaldoxime dehydratase Pput_2724 8 COG2329 COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides General function prediction only 148547565 Common - hypothetical protein Pput_2344 1 None None None 148547350 Common - ImpA domain protein Pput_2129 17 None None None 148547594 Common - PAP2 (acid phosphatase) superfamily protein-like protein Pput_2373 20 COG3907 COG3907, PAP2 (acid phosphatase) superfamily protein General function prediction only 148549596 Common - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase Pput_4391 206 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 148546268 Common - glycine dehydrogenase Pput_1025 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 148550221 Nonpathogen - hypothetical protein Pput_5019 1 None None None 148550366 Common - cyclic nucleotide-regulated small mechanosensitive ion channel Pput_5166 185 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 148549675 Common - phosphate-starvation-inducible E Pput_4473 16 COG3223 COG3223, Predicted membrane protein Function unknown 148546461 Common - C4-dicarboxylate transporter DctA Pput_1218 162 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 148545718 Common - iron-sulfur cluster assembly accessory protein Pput_0466 166 COG0316 IscA, Uncharacterized conserved protein Function unknown 148547059 Common clpS ATP-dependent Clp protease adaptor protein ClpS Pput_1824 122 COG2127 COG2127, Uncharacterized conserved protein Function unknown 148547967 Common dapF diaminopimelate epimerase Pput_2751 203 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 148550295 Common - putative transcriptional regulator, AsnC family Pput_5095 161 COG1522 Lrp, Transcriptional regulators Transcription 148546504 Common - transposase, IS111A/IS1328/IS1533 Pput_1261 59 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 148547973 Common - putative glutathione S-transferase YghU Pput_2758 97 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148547807 Common - polysaccharide export protein Pput_2590 120 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 148545980 Common - major facilitator superfamily MFS_1 Pput_0734 130 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148547346 Common - GPW/gp25 family protein Pput_2125 10 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 148546348 Common - alpha/beta hydrolase fold Pput_1105 109 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148546578 Common - putative RNA polymerase, sigma-24 subunit, ECF subfamily Pput_1336 43 COG4941 COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain Transcription 148547140 Common - aminoglycoside phosphotransferase Pput_1910 60 COG3173 COG3173, Predicted aminoglycoside phosphotransferase General function prediction only 148549507 Common - two component transcriptional regulator, winged helix family Pput_4301 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148547039 Common - allantoate amidohydrolase Pput_1804 84 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 148549459 Common xerD site-specific tyrosine recombinase XerD Pput_4253 232 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 148549821 Common - McrBC 5-methylcytosine restriction system component-like protein Pput_4619 23 COG4268 McrC, McrBC 5-methylcytosine restriction system component Defense mechanisms 148546603 Common - outer membrane porin Pput_1363 8 None None None 148545965 Nonpathogen - hypothetical protein Pput_0719 1 None None None 148547281 Common - protein of unknown function DUF6, transmembrane Pput_2059 63 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 148545863 Common - two component transcriptional regulator, LuxR family Pput_0613 218 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148550481 Common - outer membrane porin Pput_5281 9 None None None 148545320 Nonpathogen - hypothetical protein Pput_0063 1 None None None 148548274 Nonpathogen - hypothetical protein Pput_3064 1 None None None 148547271 Common - response regulator receiver protein Pput_2049 29 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148548935 Common - metallophosphoesterase Pput_3729 61 None None None 148545544 Common - TonB-dependent siderophore receptor Pput_0288 104 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148547544 Common - hypothetical protein Pput_2323 3 None None None 148547724 Common - Nucleoside phosphorylase-like protein Pput_2507 67 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 148548392 Common - transcriptional regulator, TetR family Pput_3184 38 COG1309 AcrR, Transcriptional regulator Transcription 148549096 Common - Glutathione S-transferase, N-terminal domain Pput_3890 105 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148545498 Common - cystine transporter subunit Pput_0242 189 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148547161 Common - Non-specific serine/threonine protein kinase Pput_1936 69 COG0467 RAD55, RecA-superfamily ATPases implicated in signal transduction Signal transduction mechanisms 148548865 Common - hypothetical protein Pput_3659 113 COG1806 COG1806, Uncharacterized protein conserved in bacteria Function unknown 148548940 Common - NADH:flavin oxidoreductase/NADH oxidase Pput_3734 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 148546589 Common - protein of unknown function DUF482 Pput_1347 81 COG3146 COG3146, Uncharacterized protein conserved in bacteria Function unknown 148549380 Common - UDP-N-acetylglucosamine acyltransferase Pput_4174 165 COG1043 LpxA, Acyl- acyl carrier protein 148548007 Nonpathogen - hypothetical protein Pput_2793 1 None None None 148549721 Common - protein of unknown function, zinc metallopeptidase putative Pput_4519 87 COG2321 COG2321, Predicted metalloprotease General function prediction only 148550264 Common - hypothetical protein Pput_5064 63 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148548366 Common - type I secretion membrane fusion protein, HlyD family Pput_3156 118 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 148549726 Common - Antibiotic biosynthesis monooxygenase Pput_4524 50 COG1359 COG1359, Uncharacterized conserved protein Function unknown 148546291 Common - phosphogluconate dehydratase Pput_1048 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 148546430 Common - hypothetical protein Pput_1187 1 None None None 148549949 Common nadE NAD synthetase Pput_4747 165 COG0171 NadE, NAD synthase Coenzyme metabolism 148546186 Common - lipopolysaccharide kinase Pput_0943 7 None None None 148547673 Common - transport-associated Pput_2456 39 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 148545840 Common - MORN repeat-containing protein Pput_0590 32 COG4642 COG4642, Uncharacterized protein conserved in bacteria Function unknown 148545938 Common - homocysteine S-methyltransferase Pput_0692 148 COG2040 MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) Amino acid transport and metabolism 148547556 Common - RND efflux system, outer membrane lipoprotein, NodT family Pput_2335 121 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148547232 Common - helix-turn-helix- domain containing protein, AraC type Pput_2010 76 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148549654 Common - RND efflux system, outer membrane lipoprotein, NodT family Pput_4452 124 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148548513 Common - transcriptional regulator, LysR family Pput_3305 149 COG0583 LysR, Transcriptional regulator Transcription 148547954 Common - oxidoreductase FAD/NAD(P)-binding domain protein Pput_2738 102 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 148548806 Common - SOS-response cell division inhibitor blocks FtsZ ring formation-like protein Pput_3600 15 COG5404 SulA, SOS-response cell division inhibitor, blocks FtsZ ring formation Cell division and chromosome partitioning 148550397 Common - Phosphomannomutase Pput_5197 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 148547052 Common - adenylosuccinate lyase Pput_1817 225 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 148545435 Common - Formyl-CoA transferase Pput_0178 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 148546929 Common - Pirin domain protein Pput_1691 143 COG1741 COG1741, Pirin-related protein General function prediction only 148547033 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Pput_1798 37 COG3324 COG3324, Predicted enzyme related to lactoylglutathione lyase General function prediction only 148547417 Common - TonB-dependent siderophore receptor Pput_2196 90 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 148547984 Common - urea amidolyase related protein Pput_2770 115 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 148548536 Common - major facilitator superfamily MFS_1 Pput_3328 165 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148549627 Common - ABC transporter related Pput_4425 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 148550155 Common - type IV pilus secretin PilQ Pput_4953 140 COG4796 HofQ, Type II secretory pathway, component HofQ Intracellular trafficking and secretion 148550274 Common - protein of unknown function DUF1234 Pput_5074 56 COG3545 COG3545, Predicted esterase of the alpha/beta hydrolase fold General function prediction only 148546371 Common - OmpA/MotB domain protein Pput_1128 42 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 148546534 Common moaA molybdenum cofactor biosynthesis protein A Pput_1291 201 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 148547445 Common - transcriptional regulator, MarR family Pput_2224 117 COG1846 MarR, Transcriptional regulators Transcription 148549101 Common - Alcohol dehydrogenase, zinc-binding domain protein Pput_3895 118 COG2130 COG2130, Putative NADP-dependent oxidoreductases General function prediction only 148547557 Common - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family Pput_2336 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 148546093 Common - tRNA 2-selenouridine synthase Pput_0849 65 COG2603 COG2603, Predicted ATPase General function prediction only 148546225 Common - peptidase U62, modulator of DNA gyrase Pput_0982 154 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 148548822 Common - lipid kinase Pput_3616 111 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 148548949 Common - short-chain dehydrogenase/reductase SDR Pput_3743 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148546130 Common - Pyrrolo-quinoline quinone Pput_0886 115 COG1520 COG1520, FOG: WD40-like repeat Function unknown 148546582 Common - acyl-CoA synthetase Pput_1340 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148549624 Common - sulfate adenylyltransferase subunit 2 Pput_4422 139 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 148548400 Common - hypothetical protein Pput_3192 5 None None None 148548067 Common - Fumarylacetoacetate (FAA) hydrolase family protein-like protein Pput_2853 35 COG3970 COG3970, Fumarylacetoacetate (FAA) hydrolase family protein General function prediction only 148545594 Common - methyl-accepting chemotaxis sensory transducer Pput_0339 143 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148548381 Common - amino acid permease-associated region Pput_3171 172 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 148549828 Nonpathogen - hypothetical protein Pput_4626 1 None None None 148546153 Common - hypothetical protein Pput_0910 15 None None None 148546481 Common - putative cold-shock DNA-binding domain protein Pput_1238 176 COG1278 CspC, Cold shock proteins Transcription 148550073 Common - pyrimidine regulatory protein PyrR Pput_4871 109 COG2065 PyrR, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase Nucleotide transport and metabolism 148547911 Common - 2-dehydropantoate 2-reductase Pput_2695 103 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 148545335 Common - DNA-3-methyladenine glycosylase I Pput_0078 132 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 148548304 Common - 40-residue YVTN family beta-propeller repeat protein Pput_3094 88 COG3391 COG3391, Uncharacterized conserved protein Function unknown 148550374 Common - ATP-dependent DNA helicase Rep Pput_5174 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 148546840 Common - adenine phosphoribosyltransferase Pput_1602 166 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 148545438 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Pput_0181 55 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148546205 Common - phospholipid/glycerol acyltransferase Pput_0962 88 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 148549819 Common - hypothetical protein Pput_4617 16 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 148546569 Common - hypothetical protein Pput_1327 1 None None None 148546976 Common - NADH dehydrogenase subunit J Pput_1738 29 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 148546280 Common - ornithine carbamoyltransferase Pput_1037 239 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 148549055 Common - phospho-2-dehydro-3-deoxyheptonate aldolase Pput_3849 73 COG3200 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 148545375 Common - hypothetical protein Pput_0118 4 None None None 148545684 Common glpE thiosulfate sulfurtransferase Pput_0432 121 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 148548472 Common - transcriptional regulator, LysR family Pput_3264 154 COG0583 LysR, Transcriptional regulator Transcription 148545325 Common - beta-lactamase domain protein Pput_0068 193 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 148546861 Common - extracytoplasmic-function sigma-70 factor PvdS Pput_1623 79 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148545403 Common - diguanylate cyclase Pput_0146 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 148548907 Common - transcriptional regulator, LysR family Pput_3701 190 COG0583 LysR, Transcriptional regulator Transcription 148546649 Nonpathogen - hypothetical protein Pput_1409 1 None None None 148547966 Common - protein of unknown function DUF925 Pput_2750 26 COG3575 COG3575, Uncharacterized protein conserved in bacteria Function unknown 148550329 Common - isoprenoid biosynthesis protein with amidotransferase-like domain Pput_5129 41 COG3155 ElbB, Uncharacterized protein involved in an early stage of isoprenoid biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 148548573 Common - Domain of unknown function DUF1833 Pput_3365 3 None None None 148548492 Common - major facilitator superfamily MFS_1 Pput_3284 144 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148548884 Common - acriflavin resistance protein Pput_3678 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 148546714 Common flgL flagellar hook-associated protein FlgL Pput_1475 101 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 148545701 Common - ribulose-phosphate 3-epimerase Pput_0449 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 148548412 Common - hypothetical protein Pput_3204 56 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 148545301 Common - heavy metal sensor signal transduction histidine kinase Pput_0044 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148545830 Common - GCN5-related N-acetyltransferase Pput_0580 25 COG0456 RimI, Acetyltransferases General function prediction only 148550111 Common - transcriptional regulator, GntR family Pput_4909 125 COG2188 PhnF, Transcriptional regulators Transcription 148548026 Common - Bile acid:sodium symporter Pput_2812 60 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 148549130 Common - ABC-2 type transporter Pput_3924 99 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 148549410 Common - hypothetical protein Pput_4204 32 COG3126 COG3126, Uncharacterized protein conserved in bacteria Function unknown 148548017 Common - Catalase domain protein Pput_2803 113 COG0753 KatE, Catalase Inorganic ion transport and metabolism 148547654 Common - molybdopterin dehydrogenase, FAD-binding Pput_2434 74 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 148549942 Common - short-chain dehydrogenase/reductase SDR Pput_4740 237 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 148545447 Common - Taurine dioxygenase Pput_0190 47 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 148545526 Nonpathogen - 17 kDa surface antigen Pput_0270 1 COG3809 COG3809, Uncharacterized protein conserved in bacteria Function unknown 148548452 Common - Sporulation domain protein Pput_3244 1 None None None 148548372 Common - major facilitator superfamily MFS_1 Pput_3162 135 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148548333 Common - oxidoreductase domain protein Pput_3123 187 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 148550319 Common - Alcohol dehydrogenase, zinc-binding domain protein Pput_5119 151 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 148546364 Common - molydopterin dinucleotide-binding region Pput_1121 181 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 148548227 Common - amine oxidase Pput_3017 68 COG2907 COG2907, Predicted NAD/FAD-binding protein General function prediction only 148550462 Common - hypothetical protein Pput_5262 7 None None None 148549795 Common - chaperone protein DnaK Pput_4593 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 148546591 Common - peptidyl-prolyl cis-trans isomerase, cyclophilin type Pput_1349 200 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 148548407 Common - major facilitator superfamily MFS_1 Pput_3199 193 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148547379 Common - major facilitator superfamily MFS_1 Pput_2158 198 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148548173 Common - ATPase involved in DNA repair-like protein Pput_2963 4 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 148547770 Common - Benzoate 1,2-dioxygenase Pput_2553 27 COG5517 COG5517, Small subunit of phenylpropionate dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 148548258 Common - amidohydrolase Pput_3048 169 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 148546966 Common - TonB-dependent receptor Pput_1728 76 COG4772 FecA, Outer membrane receptor for Fe3+-dicitrate Inorganic ion transport and metabolism 148545738 Common rpsJ 30S ribosomal protein S10 Pput_0486 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 148548379 Common - hypothetical protein Pput_3169 10 None None None 148546570 Common - CsbD family protein Pput_1328 31 COG3237 COG3237, Uncharacterized protein conserved in bacteria Function unknown 148546981 Common - NADH dehydrogenase subunit E Pput_1743 157 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 148550346 Common - Sel1 domain protein repeat-containing protein Pput_5146 4 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 148548144 Common - hypothetical protein Pput_2934 33 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 148549326 Nonpathogen - hypothetical protein Pput_4120 1 None None None 148548314 Common - hypothetical protein Pput_3104 1 None None None 148546390 Common - Penicillin amidase Pput_1147 75 COG2366 COG2366, Protein related to penicillin acylase General function prediction only 148549555 Common - phosphate transporter Pput_4350 155 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 148547705 Common - outer membrane porin Pput_2488 10 None None None 148545312 Common - heavy metal translocating P-type ATPase Pput_0055 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 148547777 Common - hypothetical protein Pput_2560 12 None None None 148549189 Common - Patatin Pput_3983 86 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 148545452 Common - Sel1 domain protein repeat-containing protein Pput_0195 52 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 148549572 Common - hypothetical protein Pput_4367 14 None None None 148550429 Common - PAS/PAC sensor signal transduction histidine kinase Pput_5229 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148550449 Common - histone deacetylase superfamily Pput_5249 161 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 148549579 Common - multi-sensor signal transduction histidine kinase Pput_4374 218 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 148550386 Common - phospholipase D/Transphosphatidylase Pput_5186 127 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 148549990 Common - DNA topoisomerase IV subunit A Pput_4788 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 148549089 Common - transposase, IS111A/IS1328/IS1533 Pput_3883 59 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 148549265 Common - hypothetical protein Pput_4059 11 None None None 148549807 Common - phage integrase family protein Pput_4605 104 COG0582 XerC, Integrase DNA replication, recombination, and repair 148546752 Common fliR flagellar biosynthesis protein FliR Pput_1513 104 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 148545663 Common - putative transcriptional regulator, AsnC family Pput_0408 154 COG1522 Lrp, Transcriptional regulators Transcription 148545417 Common - protein of unknown function DUF140 Pput_0160 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 148545532 Common - 3'(2'),5'-bisphosphate nucleotidase Pput_0276 173 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 148550339 Common xerC site-specific tyrosine recombinase XerC Pput_5139 224 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 148546414 Common - ABC transporter related Pput_1171 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 148547138 Common - Methyltransferase type 12 Pput_1908 18 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 148549997 Common - NUDIX hydrolase Pput_4795 68 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 148547874 Common - Lysine exporter protein (LYSE/YGGA) Pput_2658 101 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148547817 Common - hypothetical protein Pput_2600 35 COG4544 COG4544, Uncharacterized conserved protein Function unknown 148549659 Common - secretion protein HlyD family protein Pput_4457 115 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 148545749 Common rplN 50S ribosomal protein L14 Pput_0497 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 148548126 Common - hypothetical protein Pput_2915 24 None None None 148548996 Common - hypothetical protein Pput_3790 1 None None None 148549467 Common - cytochrome c assembly protein Pput_4261 88 COG4137 COG4137, ABC-type uncharacterized transport system, permease component General function prediction only 148547713 Common - cardiolipin synthase 2 Pput_2496 143 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 148546202 Common - NADH:flavin oxidoreductase/NADH oxidase Pput_0959 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 148546637 Common - Patatin Pput_1397 144 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 148549961 Common - RNA methyltransferase, TrmH family, group 3 Pput_4759 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 148550086 Common - putative polyhydroxyalkanoic acid system protein Pput_4884 8 None None None 148546871 Common - protein of unknown function DUF182 Pput_1633 101 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 148548068 Common - Malate/L-lactate dehydrogenase Pput_2854 67 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 148546818 Common - ureidoglycolate hydrolase Pput_1580 35 COG3194 DAL3, Ureidoglycolate hydrolase Nucleotide transport and metabolism 148545669 Common - hypothetical protein Pput_0414 6 None None None 148547959 Common - integral membrane sensor signal transduction histidine kinase Pput_2743 129 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 148546787 Common - Tetratricopeptide TPR_2 repeat protein Pput_1548 61 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 148547535 Common - efflux transporter, RND family, MFP subunit Pput_2314 148 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148549477 Common - Polypeptide-transport-associated domain protein, ShlB-type Pput_4271 38 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 148549778 Common rbfA ribosome-binding factor A Pput_4576 181 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 148548852 Common - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein Pput_3646 93 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 148546287 Common - anti-FecI sigma factor, FecR Pput_1044 46 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 148545555 Common - extracellular solute-binding protein, family 3 Pput_0300 177 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148549304 Common - hypothetical protein Pput_4098 6 None None None 148550137 Common - transcriptional regulator BetI Pput_4935 48 COG1309 AcrR, Transcriptional regulator Transcription 148547174 Common - UTP-glucose-1-phosphate uridylyltransferase Pput_1949 231 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 148549384 Common - surface antigen (D15) Pput_4178 160 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 148550047 Common - membrane protein-like protein Pput_4845 22 COG3686 COG3686, Predicted membrane protein Function unknown 148546626 Common - hypothetical protein Pput_1386 1 None None None 148549765 Common - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Pput_4563 192 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 148550312 Common - hypothetical protein Pput_5112 1 None None None 148547400 Common - extracellular solute-binding protein, family 3 Pput_2179 170 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148548308 Common - 5-dehydro-4-deoxyglucarate dehydratase Pput_3098 226 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 148546847 Common - Cytochrome c oxidase cbb3 type, accessory protein FixG Pput_1609 78 COG0348 NapH, Polyferredoxin Energy production and conversion 148549787 Common - ribosomal RNA methyltransferase RrmJ/FtsJ Pput_4585 140 COG0293 FtsJ, 23S rRNA methylase Translation, ribosomal structure and biogenesis 148547210 Common - transcriptional regulator, MarR family Pput_1988 37 COG1846 MarR, Transcriptional regulators Transcription 148549237 Common - transcriptional regulator, LysR family Pput_4031 159 COG0583 LysR, Transcriptional regulator Transcription 148548104 Common - transcriptional regulator, TetR family Pput_2892 14 COG1309 AcrR, Transcriptional regulator Transcription 148546490 Common - Pol-Pal system-associated acyl-CoA thioesterase Pput_1247 139 COG0824 FcbC, Predicted thioesterase General function prediction only 148550288 Common - extracellular solute-binding protein, family 1 Pput_5088 132 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 148549606 Common - transport-associated Pput_4402 67 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 148546289 Common - transposase, IS111A/IS1328/IS1533 Pput_1046 59 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 148545672 Common - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Pput_0420 211 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148545877 Common - Heavy metal transport/detoxification protein Pput_0627 47 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 148548645 Common - transcriptional regulator, GntR family Pput_3437 141 COG1802 GntR, Transcriptional regulators Transcription 148546643 Common - helix-turn-helix- domain containing protein, AraC type Pput_1403 83 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148549220 Common - nitrite reductase (NAD(P)H), small subunit Pput_4014 44 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 148546118 Common - iron-sulfur cluster assembly protein IscA Pput_0874 164 COG0316 IscA, Uncharacterized conserved protein Function unknown 148546727 Common - Beta-ketoacyl-acyl-carrier-protein synthase I Pput_1488 196 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 148547122 Common - hypothetical protein Pput_1892 19 COG2309 AmpS, Leucyl aminopeptidase (aminopeptidase T) Amino acid transport and metabolism 148546499 Common - cation efflux protein Pput_1256 41 COG3965 COG3965, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 148547041 Common - Lipocalin family protein Pput_1806 74 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 148548717 Common - protein of unknown function DUF6, transmembrane Pput_3509 119 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 148546946 Common - K+-transporting ATPase, B subunit Pput_1708 232 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism 148546255 Common - nucleoid-associated protein NdpA Pput_1012 31 COG3081 COG3081, Nucleoid-associated protein General function prediction only 148549072 Common - 1-acyl-sn-glycerol-3-phosphate acyltransferase Pput_3866 166 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 148550151 Common gltB glutamate synthase subunit alpha Pput_4949 204 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 148547026 Common - 4-alpha-glucanotransferase Pput_1791 119 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 148545602 Common - sarcosine oxidase, alpha subunit family Pput_0347 181 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 148547623 Common - feruloyl-CoA synthase Pput_2402 195 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148549419 Common - protein of unknown function DUF72 Pput_4213 93 COG1801 COG1801, Uncharacterized conserved protein Function unknown 148550231 Nonpathogen - hypothetical protein Pput_5029 1 COG3692 COG3692, Uncharacterized protein conserved in bacteria Function unknown 148546337 Common - general secretion pathway protein L Pput_1094 1 None None None 148547217 Common - shikimate 5-dehydrogenase Pput_1995 206 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 148545660 Common - coenzyme PQQ biosynthesis protein PqqF Pput_0405 157 COG1025 Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like Posttranslational modification, protein turnover, chaperones 148548608 Common - hypothetical protein Pput_3400 6 None None None 148546720 Common - DegT/DnrJ/EryC1/StrS aminotransferase Pput_1481 195 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 148546301 Common - Aldose 1-epimerase Pput_1058 52 COG0676 COG0676, Uncharacterized enzymes related to aldose 1-epimerase Carbohydrate transport and metabolism 148546369 Common - ribonuclease T Pput_1126 66 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 148548114 Common - Oxidoreductase FAD-binding domain protein Pput_2902 156 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 148548429 Common pheS phenylalanyl-tRNA synthetase subunit alpha Pput_3221 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 148550359 Common - transcriptional regulator, LysR family Pput_5159 161 COG0583 LysR, Transcriptional regulator Transcription 148545465 Common hemC porphobilinogen deaminase Pput_0208 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 148547992 Common - delta-aminolevulinic acid dehydratase Pput_2778 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 148550383 Common - FAD dependent oxidoreductase Pput_5183 113 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148547243 Common - Glutathione S-transferase, N-terminal domain Pput_2021 75 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148545870 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase Pput_0620 232 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148547226 Common - CheB methylesterase Pput_2004 150 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 148545747 Common - 50S ribosomal protein L29 Pput_0495 140 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 148548897 Common - thioesterase superfamily protein Pput_3691 62 COG0824 FcbC, Predicted thioesterase General function prediction only 148547745 Common - transcriptional regulator, PucR family Pput_2528 35 COG2508 COG2508, Regulator of polyketide synthase expression Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 148546311 Common - transcriptional regulator, LysR family Pput_1068 186 COG0583 LysR, Transcriptional regulator Transcription 148548741 Common - protein of unknown function DUF411 Pput_3534 64 COG3019 COG3019, Predicted metal-binding protein General function prediction only 148547774 Common - histidinol-phosphate phosphatase, putative Pput_2557 186 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 148546653 Common - Sua5/YciO/YrdC/YwlC family protein Pput_1413 234 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 148548337 Common - aldehyde dehydrogenase Pput_3127 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148549549 Common - 3-carboxy-cis,cis-muconate cycloisomerase Pput_4344 220 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 148546194 Nonpathogen - hypothetical protein Pput_0951 1 None None None 148547427 Common - Cupin 2, conserved barrel domain protein Pput_2206 32 None None None 148545613 Common - sensory histidine kinase CreC Pput_0358 211 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148547436 Common - binding-protein-dependent transport systems inner membrane component Pput_2215 130 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 148548612 Nonpathogen - hypothetical protein Pput_3404 1 None None None 148546559 Common - hypothetical protein Pput_1317 8 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 148548539 Common - peptidase M14, carboxypeptidase A Pput_3331 30 COG2866 COG2866, Predicted carboxypeptidase Amino acid transport and metabolism 148546594 Common - hypothetical protein Pput_1352 1 None None None 148545761 Common rpsM 30S ribosomal protein S13 Pput_0509 246 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 148547238 Common glcF glycolate oxidase iron-sulfur subunit Pput_2016 170 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 148549786 Common - ATP-dependent metalloprotease FtsH Pput_4584 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 148545775 Common - formate dehydrogenase, alpha subunit Pput_0523 180 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 148547214 Common - hypothetical protein Pput_1992 2 None None None 148546528 Common - proline racemase Pput_1285 47 COG3938 COG3938, Proline racemase Amino acid transport and metabolism 148549519 Common - pseudouridine synthase Pput_4313 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 148546964 Common - hypothetical protein Pput_1726 1 None None None 148550140 Common - hypothetical protein Pput_4938 2 None None None 148550455 Common - pyruvate carboxylase subunit B Pput_5255 199 COG5016 COG5016, Pyruvate/oxaloacetate carboxyltransferase Energy production and conversion 148549406 Common - rRNA (guanine-N(1)-)-methyltransferase Pput_4200 56 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 148547576 Common - cobalt transporter, subunit CbtB Pput_2355 11 None None None 148549776 Common rpsO 30S ribosomal protein S15 Pput_4574 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 148548804 Common - transcriptional regulator, TetR family Pput_3598 95 COG1309 AcrR, Transcriptional regulator Transcription 148545726 Common secE preprotein translocase subunit SecE Pput_0474 31 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 148547999 Common - integral membrane sensor signal transduction histidine kinase Pput_2785 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148547455 Common - hydroxymethylglutaryl-CoA lyase Pput_2234 98 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 148550058 Common - amine oxidase Pput_4856 42 COG1231 COG1231, Monoamine oxidase Amino acid transport and metabolism 148550038 Common pgk phosphoglycerate kinase Pput_4836 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 148550474 Common - dihydrolipoamide dehydrogenase Pput_5274 244 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 148545694 Common - hypothetical protein Pput_0442 5 None None None 148547621 Common - p-hydroxycinnamoyl CoA hydratase/lyase Pput_2400 181 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 148547260 Common - acyl-CoA dehydrogenase domain protein Pput_2038 162 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148545505 Common - outer membrane porin Pput_0249 10 None None None 148549297 Common - protein of unknown function DUF114 Pput_4091 35 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 148548483 Common - TonB-dependent siderophore receptor Pput_3275 126 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148545496 Common - putative amino-acid ABC transporter ATP-binding protein YecC Pput_0240 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 148546998 Common - Glutathione S-transferase, N-terminal domain Pput_1760 99 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148546031 Common - hypothetical protein Pput_0785 4 None None None 148549644 Common - Carbohydrate-binding and sugar hydrolysis Pput_4442 8 None None None 148550040 Common - transketolase Pput_4838 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 148545477 Common - band 7 protein Pput_0220 207 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 148547519 Common - hypothetical protein Pput_2298 13 None None None 148547463 Common - lipid-binding START domain protein Pput_2242 16 None None None 148549671 Common - PepSY-associated TM helix domain protein Pput_4469 47 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 148545267 Common - hypothetical protein Pput_0008 9 None None None 148545512 Common - TOBE domain protein Pput_0256 51 COG3585 MopI, Molybdopterin-binding protein Coenzyme metabolism 148548847 Common - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase Pput_3641 99 COG2027 DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) Cell envelope biogenesis, outer membrane 148549290 Common - hypothetical protein Pput_4084 1 None None None 148549364 Common truD tRNA pseudouridine synthase D Pput_4158 81 COG0585 COG0585, Uncharacterized conserved protein Function unknown 148545433 Common - transcriptional regulator, LysR family Pput_0176 168 COG0583 LysR, Transcriptional regulator Transcription 148549043 Common - hypothetical protein Pput_3837 1 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 148546325 Common - twin-arginine translocation protein, TatA/E family subunit Pput_1082 9 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 148546880 Common - aminotransferase, class V Pput_1642 188 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 148545911 Common - hypothetical protein Pput_0661 2 None None None 148549852 Common - cation diffusion facilitator family transporter Pput_4650 188 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 148545751 Common rplE 50S ribosomal protein L5 Pput_0499 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 148548440 Common - ribokinase Pput_3232 216 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 148550025 Common - Zn-dependent protease-like protein Pput_4823 36 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 148550430 Common - protein of unknown function DUF21 Pput_5230 215 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 148547355 Nonpathogen - hypothetical protein Pput_2134 1 None None None 148546618 Common - DEAD/DEAH box helicase domain protein Pput_1378 241 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 148548872 Common - TonB-dependent siderophore receptor Pput_3666 95 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148547062 Common - arginyl-tRNA-protein transferase Pput_1827 85 COG2935 COG2935, Putative arginyl-tRNA:protein arginylyltransferase Posttranslational modification, protein turnover, chaperones 148549207 Common - diguanylate phosphodiesterase Pput_4001 158 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 148549873 Common holA DNA polymerase III subunit delta Pput_4671 140 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 148548430 Common rplT 50S ribosomal protein L20 Pput_3222 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 148549252 Common - cobyrinic acid a,c-diamide synthase Pput_4046 137 COG1797 CobB, Cobyrinic acid a,c-diamide synthase Coenzyme metabolism 148546356 Common - leucine-rich repeat protein Pput_1113 12 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 148547116 Common - GntR domain protein Pput_1886 137 COG2186 FadR, Transcriptional regulators Transcription 148545641 Common - transcriptional regulator, ModE family Pput_0386 52 COG2005 ModE, N-terminal domain of molybdenum-binding protein General function prediction only 148548563 Common - hypothetical protein Pput_3355 1 None None None 148550266 Common - 2OG-Fe(II) oxygenase Pput_5066 30 COG3751 EGL-9, Predicted proline hydroxylase Posttranslational modification, protein turnover, chaperones 148548342 Common - hydroxydechloroatrazine ethylaminohydrolase Pput_3132 181 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 148545572 Common - L-serine dehydratase 1 Pput_0317 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 148550211 Common - binding-protein-dependent transport systems inner membrane component Pput_5009 112 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 148545781 Common - Asparaginase Pput_0529 87 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 148550327 Common - Uncharacterized membrane-associated protein Pput_5127 76 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 148547510 Common - hypothetical protein Pput_2289 8 None None None 148545946 Common - Endoribonuclease L-PSP Pput_0700 59 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 148546959 Common - Hydroxyacylglutathione hydrolase Pput_1721 188 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 148548462 Nonpathogen - hypothetical protein Pput_3254 1 None None None 148549134 Common - DegT/DnrJ/EryC1/StrS aminotransferase Pput_3928 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 148547092 Common - transcriptional regulator, LysR family Pput_1860 125 COG0583 LysR, Transcriptional regulator Transcription 148548035 Common - transcriptional regulator, XRE family Pput_2821 118 COG1396 HipB, Predicted transcriptional regulators Transcription 148548783 Common - response regulator receiver protein Pput_3577 226 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 148549885 Common - hypothetical protein Pput_4683 166 COG1576 COG1576, Uncharacterized conserved protein Function unknown 148546298 Common - binding-protein-dependent transport systems inner membrane component Pput_1055 142 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 148548715 Common - isochorismatase hydrolase Pput_3507 103 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 148548695 Common - transmembrane pair domain protein Pput_3487 41 COG4125 COG4125, Predicted membrane protein Function unknown 148549645 Common - hypothetical protein Pput_4443 5 None None None 148550440 Common - Aldose 1-epimerase Pput_5240 61 COG0676 COG0676, Uncharacterized enzymes related to aldose 1-epimerase Carbohydrate transport and metabolism 148550004 Common - small multidrug resistance protein Pput_4802 123 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 148548529 Common - hypothetical protein Pput_3321 10 None None None 148545743 Common rpsS 30S ribosomal protein S19 Pput_0491 245 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 148546949 Common - two component transcriptional regulator, winged helix family Pput_1711 206 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148546131 Common engA GTP-binding protein EngA Pput_0887 234 COG1160 COG1160, Predicted GTPases General function prediction only 148548287 Common - outer membrane porin Pput_3077 7 None None None 148546236 Common - Cell envelope biogenesis YhbN Pput_0993 60 COG1934 COG1934, Uncharacterized protein conserved in bacteria Function unknown 148545624 Common - lipopolysaccharide kinase Pput_0369 10 None None None 148548520 Common - transcriptional regulator, AraC family Pput_3312 149 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148549182 Common actP acetate permease Pput_3976 178 COG4147 DhlC, Predicted symporter General function prediction only 148545819 Common - TonB-dependent siderophore receptor Pput_0569 110 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148549030 Common - Fimbrial protein-like protein Pput_3824 1 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 148548559 Common - Propeptide, PepSY amd peptidase M4 Pput_3351 5 COG3212 COG3212, Predicted membrane protein Function unknown 148549376 Common - acetyl-CoA carboxylase carboxyltransferase subunit alpha Pput_4170 182 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 148545445 Common - conserved repeat domain Pput_0188 178 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism 148548552 Nonpathogen - hypothetical protein Pput_3344 2 None None None 148545274 Common - copper-resistance protein, CopA family Pput_0015 124 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 148548702 Common - protein of unknown function DUF81 Pput_3494 43 COG0730 COG0730, Predicted permeases General function prediction only 148548663 Common - hypothetical protein Pput_3455 1 None None None 148549904 Nonpathogen - hypothetical protein Pput_4702 1 None None None 148546432 Common - diguanylate cyclase Pput_1189 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 148549601 Common - hypothetical protein Pput_4396 137 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 148550323 Common rho transcription termination factor Rho Pput_5123 204 COG1158 Rho, Transcription termination factor Transcription 148545934 Common - Lactate/malate dehydrogenase Pput_0687 192 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 148549938 Common - hypothetical protein Pput_4736 2 None None None 148550203 Common - conserved hypothetical protein 95 Pput_5001 129 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 148548348 Common - protein of unknown function DUF330 Pput_3138 12 COG3009 COG3009, Uncharacterized protein conserved in bacteria Function unknown 148545501 Common tauD taurine dioxygenase Pput_0245 47 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 148548469 Common - RES domain protein Pput_3261 30 COG5654 COG5654, Uncharacterized conserved protein Function unknown 148545577 Common - 3-hydroxybutyryl-CoA dehydrogenase Pput_0322 159 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 148547372 Common - hypothetical protein Pput_2151 4 None None None 148545803 Common nusB transcription antitermination protein NusB Pput_0553 178 COG0781 NusB, Transcription termination factor Transcription 148549909 Common - precorrin-3B synthase Pput_4707 72 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 148545922 Common coaE dephospho-CoA kinase Pput_0672 206 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 148547628 Common - hypothetical protein Pput_2407 19 None None None 148550308 Common - hypothetical protein Pput_5108 41 COG3079 COG3079, Uncharacterized protein conserved in bacteria Function unknown 148545287 Common - Heavy metal transport/detoxification protein Pput_0029 14 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 148546902 Common sdhB succinate dehydrogenase iron-sulfur subunit Pput_1664 207 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 148547476 Common - hypothetical protein Pput_2255 5 None None None 148545887 Common - methylmalonate-semialdehyde dehydrogenase Pput_0637 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148549744 Common - ketol-acid reductoisomerase Pput_4542 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 148549978 Common - putative iron-sulfur cluster binding protein Pput_4776 134 COG1600 COG1600, Uncharacterized Fe-S protein Energy production and conversion 148545637 Common - malate synthase G Pput_0382 70 COG2225 AceB, Malate synthase Energy production and conversion 148549233 Common - Sel1 domain protein repeat-containing protein Pput_4027 1 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 148550172 Common metX homoserine O-acetyltransferase Pput_4970 133 COG2021 MET2, Homoserine acetyltransferase Amino acid transport and metabolism 148545491 Common - ABC transporter related Pput_0235 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 148548848 Common - diguanylate cyclase with PAS/PAC sensor Pput_3642 189 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 148549039 Nonpathogen - hypothetical protein Pput_3833 1 None None None 148546944 Nonpathogen - K+-transporting ATPase, F subunit Pput_1706 1 None None None 148547601 Common - PfkB domain protein Pput_2380 183 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 148549198 Common - transcriptional regulator, GntR family Pput_3992 114 COG2188 PhnF, Transcriptional regulators Transcription 148549093 Common - Smr protein/MutS2 Pput_3887 102 COG2840 COG2840, Uncharacterized protein conserved in bacteria Function unknown 148545954 Common - hypothetical protein Pput_0708 5 None None None 148547646 Common - RND efflux system, outer membrane lipoprotein, NodT family Pput_2426 108 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148548833 Common acnA aconitate hydratase Pput_3627 222 COG1048 AcnA, Aconitase A Energy production and conversion 148545716 Common - conserved hypothetical protein 701 Pput_0464 97 COG1981 COG1981, Predicted membrane protein Function unknown 148549208 Common - hypothetical protein Pput_4002 2 None None None 148546890 Common - Electron transfer flavoprotein, alpha subunit-like protein Pput_1652 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 148546895 Common - hypothetical protein Pput_1657 1 None None None 148546243 Common - toluene tolerance family protein Pput_1000 64 COG2854 Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component Secondary metabolites biosynthesis, transport, and catabolism 148548045 Common - hypothetical protein Pput_2831 1 None None None 148550189 Common - putative methyltransferase Pput_4987 212 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 148549012 Common - signal peptide peptidase SppA, 36K type Pput_3806 190 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 148549562 Common - hypothetical protein Pput_4357 4 None None None 148547483 Common - transcriptional regulator, LysR family Pput_2262 162 COG0583 LysR, Transcriptional regulator Transcription 148549584 Common secA preprotein translocase subunit SecA Pput_4379 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 148545839 Common - nucleoside-diphosphate-sugar epimerase-like protein Pput_0589 55 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 148546876 Common - two component transcriptional regulator, winged helix family Pput_1638 209 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148549168 Common - protein of unknown function DUF344 Pput_3962 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 148548682 Common - small integral membrane protein-like protein Pput_3474 19 COG5477 COG5477, Predicted small integral membrane protein Function unknown 148550125 Common - nitrogen metabolism transcriptional regulator, NtrC, Fis Family Pput_4923 221 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148548499 Common - hypothetical protein Pput_3291 1 None None None 148548048 Common - peptidase C39, bacteriocin processing Pput_2834 46 COG3271 COG3271, Predicted double-glycine peptidase General function prediction only 148547163 Common - carbon storage regulator, CsrA Pput_1938 82 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 148545955 Common - hypothetical protein Pput_0709 21 None None None 148546423 Common - hypothetical protein Pput_1180 2 None None None 148546141 Common - TonB-dependent siderophore receptor Pput_0897 129 COG4772 FecA, Outer membrane receptor for Fe3+-dicitrate Inorganic ion transport and metabolism 148549865 Common - PhoH family protein Pput_4663 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 148547442 Common - acyl-CoA synthetase Pput_2221 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148549005 Common - acyl carrier protein Pput_3799 186 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148546615 Common - hypothetical protein Pput_1375 1 None None None 148550419 Common - ATP-dependent DNA helicase RecG Pput_5219 211 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 148549495 Common - signal peptidase I Pput_4289 210 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 148547097 Common - transcriptional regulator, TetR family Pput_1866 131 COG1309 AcrR, Transcriptional regulator Transcription 148547832 Common - YD repeat protein Pput_2615 73 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 148547904 Nonpathogen - hypothetical protein Pput_2688 1 None None None 148545628 Common - hypothetical protein Pput_0373 1 None None None 148549972 Common hfq RNA-binding protein Hfq Pput_4770 127 COG1923 Hfq, Uncharacterized host factor I protein General function prediction only 148548622 Nonpathogen - hypothetical protein Pput_3414 1 None None None 148546824 Common - aquaporin Z Pput_1586 133 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 148546773 Common - putative CheW protein Pput_1534 14 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 148549177 Common - hypothetical protein Pput_3971 3 None None None 148546306 Common - hypothetical protein Pput_1063 1 None None None 148548038 Common - transcriptional regulator, LysR family Pput_2824 120 COG0583 LysR, Transcriptional regulator Transcription 148550091 Common hisE phosphoribosyl-ATP pyrophosphatase Pput_4889 177 COG0140 HisI, Phosphoribosyl-ATP pyrophosphohydrolase Amino acid transport and metabolism 148550149 Common hemE uroporphyrinogen decarboxylase Pput_4947 179 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 148546735 Common - two component, sigma54 specific, transcriptional regulator, Fis family Pput_1496 188 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148550194 Common - Rhodanese domain protein Pput_4992 145 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 148546374 Common - two component transcriptional regulator, LuxR family Pput_1131 220 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148549737 Common - hypothetical protein Pput_4535 16 None None None 148546129 Common - hypothetical protein Pput_0885 54 COG2976 COG2976, Uncharacterized protein conserved in bacteria Function unknown 148548444 Common - Monosaccharide-transporting ATPase Pput_3236 116 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 148549283 Common - protein of unknown function DUF1282 Pput_4077 24 None None None 148547827 Common - major facilitator superfamily MFS_1 Pput_2610 151 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148549570 Common fxsA FxsA Pput_4365 2 COG3030 FxsA, Protein affecting phage T7 exclusion by the F plasmid General function prediction only 148546124 Common - radical SAM enzyme, Cfr family Pput_0880 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 148545523 Common hslO Hsp33-like chaperonin Pput_0267 127 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 148547584 Common - 2OG-Fe(II) oxygenase Pput_2363 56 COG3145 AlkB, Alkylated DNA repair protein DNA replication, recombination, and repair 148547120 Common - (2Fe-2S)-binding domain protein Pput_1890 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 148548137 Common - DNA repair protein RadC Pput_2927 177 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 148548989 Common gltX glutamyl-tRNA synthetase Pput_3783 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 148547284 Common - creatinase Pput_2062 144 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 148548584 Common - hypothetical protein Pput_3376 6 None None None 148545281 Common - heavy metal efflux pump, CzcA family Pput_0022 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 148548958 Common - two component transcriptional regulator, LuxR family Pput_3752 171 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148547821 Common - NIPSNAP family containing protein Pput_2604 18 None None None 148547567 Common - carbohydrate kinase, thermoresistant glucokinase family Pput_2346 80 COG3265 GntK, Gluconate kinase Carbohydrate transport and metabolism 148545961 Common - peptidylprolyl isomerase, FKBP-type Pput_0715 139 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 148547101 Common - 3-oxoacid CoA-transferase, B subunit Pput_1870 94 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 148548921 Common - hypothetical protein Pput_3715 32 None None None 148545485 Common - 4-aminobutyrate aminotransferase Pput_0229 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 148549393 Common - methionine aminopeptidase Pput_4187 248 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 148546933 Common - integral membrane sensor hybrid histidine kinase Pput_1695 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148549680 Common - hypothetical protein Pput_4478 38 COG2912 COG2912, Uncharacterized conserved protein Function unknown 148548815 Common - ABC transporter related Pput_3609 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 148549992 Common - hypothetical protein Pput_4790 1 COG4222 COG4222, Uncharacterized protein conserved in bacteria Function unknown 148547000 Common - protein of unknown function DUF488 Pput_1762 77 COG3189 COG3189, Uncharacterized conserved protein Function unknown 148545634 Common - DNA polymerase III, epsilon subunit Pput_0379 119 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 148547929 Common - uncharacterized peroxidase-related enzyme Pput_2713 74 COG2128 COG2128, Uncharacterized conserved protein Function unknown 148549485 Common - secreted protein-like protein Pput_4279 13 COG5513 COG5513, Predicted secreted protein Function unknown 148548888 Common - outer membrane porin Pput_3682 14 None None None 148546097 Common - phosphonate ABC transporter, inner membrane subunit Pput_0853 77 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 148546864 Nonpathogen - hypothetical protein Pput_1626 1 None None None 148548050 Common - hypothetical protein Pput_2836 19 None None None 148548542 Common - P pilus assembly protein chaperone PapD-like protein Pput_3334 27 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 148548709 Common - hypothetical protein Pput_3501 2 None None None 148549481 Common - TonB-dependent receptor Pput_4275 110 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 148550031 Common - GCN5-related N-acetyltransferase Pput_4829 56 COG2153 ElaA, Predicted acyltransferase General function prediction only 148548211 Common - ABC-type branched-chain amino acid transport systems periplasmic component-like protein Pput_3001 29 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 148545300 Common - two component heavy metal response transcriptional regulator, winged helix family Pput_0043 219 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148547637 Common - sodium:dicarboxylate symporter Pput_2416 162 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 148549331 Nonpathogen - hypothetical protein Pput_4125 1 None None None 148548980 Common - isopropylmalate isomerase large subunit Pput_3774 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 148545396 Common - hypothetical protein Pput_0139 14 None None None 148550467 Common - cobalamin synthesis protein, P47K Pput_5267 126 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 148548376 Common - FAD dependent oxidoreductase Pput_3166 110 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148549398 Common - plasmid maintenance system antidote protein, XRE family Pput_4192 61 COG3093 VapI, Plasmid maintenance system antidote protein General function prediction only 148550447 Common aspA aspartate ammonia-lyase Pput_5247 227 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 148549981 Common - ribosome-associated GTPase Pput_4779 163 COG1162 COG1162, Predicted GTPases General function prediction only 148546171 Common - beta-lactamase Pput_0928 73 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 148549662 Common - RND efflux system, outer membrane lipoprotein, NodT family Pput_4460 127 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148546521 Common - hypothetical protein Pput_1278 6 None None None 148548672 Common - Patatin Pput_3464 125 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 148547320 Common - GCN5-related N-acetyltransferase Pput_2099 1 None None None 148548219 Common - ribose-phosphate pyrophosphokinase Pput_3009 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 148547334 Common - protein of unknown function DUF181 Pput_2113 47 COG1944 COG1944, Uncharacterized conserved protein Function unknown 148548632 Nonpathogen - hypothetical protein Pput_3424 2 None None None 148548186 Nonpathogen - hypothetical protein Pput_2976 1 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148545909 Common - ABC-type branched-chain amino acid transport systems periplasmic component-like protein Pput_0659 113 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 148547922 Common - transcriptional regulator, LysR family Pput_2706 127 COG0583 LysR, Transcriptional regulator Transcription 148548962 Common - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Pput_3756 16 COG0388 COG0388, Predicted amidohydrolase General function prediction only 148546100 Common - putative transcriptional regulator Pput_0856 38 COG3636 COG3636, Predicted transcriptional regulator Transcription 148547119 Common - aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding Pput_1889 120 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 148549445 Common - binding-protein-dependent transport systems inner membrane component Pput_4239 177 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 148548072 Common - Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein Pput_2858 104 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 148545294 Nonpathogen - hypothetical protein Pput_0037 1 None None None 148546264 Common - RDD domain containing protein Pput_1021 36 COG1714 COG1714, Predicted membrane protein/domain Function unknown 148546969 Nonpathogen - hypothetical protein Pput_1731 1 None None None 148548310 Common - Galactarate dehydratase Pput_3100 73 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 148545295 Nonpathogen - hypothetical protein Pput_0038 1 None None None 148547458 Common - 4-hydroxybenzoate 3-monooxygenase Pput_2237 71 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 148545836 Common - UDP-N-acetylmuramate Pput_0586 208 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 148545379 Common - cytochrome c oxidase, subunit III Pput_0122 159 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 148549311 Nonpathogen - hypothetical protein Pput_4105 1 None None None 148548825 Common - molybdenum cofactor biosynthesis protein B Pput_3619 189 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 148546760 Common - D-alanine--D-alanine ligase Pput_1521 210 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 148550303 Common - extracellular solute-binding protein, family 1 Pput_5103 124 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 148547756 Common - transcriptional regulator, CdaR Pput_2539 38 COG3835 CdaR, Sugar diacid utilization regulator Transcription / Signal transduction mechanisms 148548085 Common - multi-sensor signal transduction histidine kinase Pput_2872 226 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 148548816 Common - Lytic transglycosylase, catalytic Pput_3610 164 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 148547969 Common - OsmC family protein Pput_2753 40 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 148550248 Common - Thymidylate synthase Pput_5048 132 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 148545880 Common - regulatory protein, ArsR Pput_0630 35 COG0640 ArsR, Predicted transcriptional regulators Transcription 148549172 Common - peptidase M42 family protein Pput_3966 58 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 148549812 Common - protein of unknown function DUF262 Pput_4610 48 COG1479 COG1479, Uncharacterized conserved protein Function unknown 148546851 Common - cytochrome c oxidase, cbb3-type, subunit I Pput_1613 143 COG3278 CcoN, Cbb3-type cytochrome oxidase, subunit 1 Posttranslational modification, protein turnover, chaperones 148548753 Common - Water Stress and Hypersensitive response protein Pput_3546 14 COG5608 COG5608, Conserved secreted protein Function unknown 148547037 Common - dihydropyrimidinase Pput_1802 199 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 148549187 Common - hypothetical protein Pput_3981 7 COG0429 COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 148546112 Common - Inositol-phosphate phosphatase Pput_0868 213 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 148548120 Common - transcriptional regulator, TetR family Pput_2908 29 COG1309 AcrR, Transcriptional regulator Transcription 148547056 Common - isocitrate dehydrogenase, NADP-dependent Pput_1821 65 COG2838 Icd, Monomeric isocitrate dehydrogenase Energy production and conversion 148546199 Common - chromosome replication initiation inhibitor protein Pput_0956 105 COG0583 LysR, Transcriptional regulator Transcription 148546938 Common - phosphohistidine phosphatase, SixA Pput_1700 55 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 148548158 Common - Type IV secretory pathway VirB4 components-like protein Pput_2948 34 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 148545893 Common - bifunctional riboflavin kinase/FMN adenylyltransferase Pput_0643 211 COG0196 RibF, FAD synthase Coenzyme metabolism 148546808 Common - 2-hydroxy-3-oxopropionate reductase Pput_1570 175 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 148547362 Common amiE acylamide amidohydrolase Pput_2141 81 COG0388 COG0388, Predicted amidohydrolase General function prediction only 148548248 Common - integral membrane sensor signal transduction histidine kinase Pput_3038 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148548293 Common - aldehyde dehydrogenase Pput_3083 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148547787 Common - L-serine dehydratase 1 Pput_2570 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 148550246 Nonpathogen - phage integrase family protein Pput_5046 1 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 148547344 Common - protein of unknown function DUF1305 Pput_2123 45 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 148546060 Common - DNA-binding transcriptional regulator FruR Pput_0815 121 COG1609 PurR, Transcriptional regulators Transcription 148546388 Common - ATP-dependent DNA ligase Pput_1145 100 COG1793 CDC9, ATP-dependent DNA ligase DNA replication, recombination, and repair 148549810 Common - phage integrase family protein Pput_4608 14 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 148549436 Common - CheA signal transduction histidine kinase Pput_4230 222 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 148549505 Common - putative signal transduction protein Pput_4299 44 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 148547516 Common - type II secretion system protein G Pput_2295 75 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 148550368 Common - aldehyde dehydrogenase Pput_5168 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148547810 Common - 3-oxoacid CoA-transferase, B subunit Pput_2593 102 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 148549625 Common - protein of unknown function DUF34 Pput_4423 122 COG0327 COG0327, Uncharacterized conserved protein Function unknown 148548867 Common - hypothetical protein Pput_3661 1 None None None 148547785 Common - FAD dependent oxidoreductase Pput_2568 130 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148549704 Common - protein of unknown function DUF466 Pput_4502 27 COG2879 COG2879, Uncharacterized small protein Function unknown 148549698 Common - alpha/beta hydrolase-like protein Pput_4496 32 COG4757 COG4757, Predicted alpha/beta hydrolase General function prediction only 148547197 Common - Propeptide, PepSY amd peptidase M4 Pput_1972 57 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 148546478 Common - outer membrane porin Pput_1235 13 None None None 148546463 Common - protein of unknown function UPF0066 Pput_1220 96 COG1720 COG1720, Uncharacterized conserved protein Function unknown 148546717 Nonpathogen - hypothetical protein Pput_1478 1 None None None 148549694 Common - hypothetical protein Pput_4492 27 COG3224 COG3224, Uncharacterized protein conserved in bacteria Function unknown 148546188 Common - multidrug efflux protein Pput_0945 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 148545983 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Pput_0737 81 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148545348 Common - sulphate transporter Pput_0091 159 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 148545368 Common - Oligopeptidase A Pput_0111 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 148550018 Common - Carbamoyltransferase Pput_4816 52 COG2192 COG2192, Predicted carbamoyl transferase, NodU family Posttranslational modification, protein turnover, chaperones 148549849 Nonpathogen - hypothetical protein Pput_4647 1 None None None 148547687 Common - UspA domain protein Pput_2470 41 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 148549453 Common - hypothetical protein Pput_4247 6 None None None 148548203 Common - inner-membrane translocator Pput_2993 111 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 148550495 Common - F0F1 ATP synthase subunit beta Pput_5295 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 148547524 Common - hypothetical protein Pput_2303 6 None None None 148549677 Common - hypothetical protein Pput_4475 1 None None None 148549613 Common rplM 50S ribosomal protein L13 Pput_4409 230 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 148550465 Common - pyridoxamine kinase Pput_5265 63 COG2240 PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase Coenzyme metabolism 148549892 Common - LrgB family protein Pput_4690 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 148547403 Common - aromatic amino acid aminotransferase Pput_2182 74 COG1448 TyrB, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 148547302 Common - NUDIX hydrolase Pput_2080 135 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 148545861 Common - penicillin-binding protein 1C Pput_0611 200 COG4953 PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC Cell envelope biogenesis, outer membrane 148548937 Common - Domain of unknown function DUF1853 Pput_3731 19 COG3782 COG3782, Uncharacterized protein conserved in bacteria Function unknown 148548364 Common - Animal haem peroxidase Pput_3154 88 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism 148547596 Common - Gluconate 2-dehydrogenase (acceptor) Pput_2375 17 None None None 148550251 Common - protein of unknown function DUF833 Pput_5051 48 COG3332 COG3332, Uncharacterized conserved protein Function unknown 148547177 Common - ABC transporter related Pput_1952 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 148545860 Common - hypothetical protein Pput_0610 2 None None None 148547393 Common - PAS/PAC sensor hybrid histidine kinase Pput_2172 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148550228 Common - transcriptional regulator, LysR family Pput_5026 184 COG0583 LysR, Transcriptional regulator Transcription 148547961 Common - response regulator receiver protein Pput_2745 221 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 148549479 Common - hypothetical protein Pput_4273 15 None None None 148550297 Common - type II secretion system protein E Pput_5097 162 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 148548394 Common - major facilitator superfamily MFS_1 Pput_3186 4 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148550290 Common - Glutamate--putrescine ligase Pput_5090 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 148547841 Common - protein of unknown function DUF879 Pput_2625 48 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 148548231 Common - hypothetical protein Pput_3021 36 COG4338 COG4338, Uncharacterized protein conserved in bacteria Function unknown 148550143 Common - hypothetical protein Pput_4941 110 COG0397 COG0397, Uncharacterized conserved protein Function unknown 148550258 Common - SdiA-regulated domain protein Pput_5058 11 COG3204 COG3204, Uncharacterized protein conserved in bacteria Function unknown 148546641 Common - metallophosphoesterase Pput_1401 68 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 148546797 Common - permease for cytosine/purine, uracil, thiamine, allantoin Pput_1558 63 COG1953 FUI1, Cytosine/uracil/thiamine/allantoin permeases Nucleotide transport and metabolism / Coenzyme metabolism 148547909 Common - MaoC domain protein dehydratase Pput_2693 89 COG2030 MaoC, Acyl dehydratase Lipid metabolism 148547249 Common - Rieske (2Fe-2S) domain protein Pput_2027 75 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 148548517 Common - hypothetical protein Pput_3309 1 None None None 148547671 Common - heavy metal translocating P-type ATPase Pput_2454 230 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 148547952 Common - hypothetical protein Pput_2736 14 COG5591 COG5591, Uncharacterized conserved protein Function unknown 148548024 Common - transcriptional regulator, TetR family Pput_2810 60 COG1309 AcrR, Transcriptional regulator Transcription 148547043 Common - enoyl-CoA hydratase Pput_1808 179 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 148545687 Common ksgA dimethyladenosine transferase Pput_0435 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 148547419 Common - amidohydrolase 2 Pput_2198 34 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 148549724 Common - transcriptional regulator, LysR family Pput_4522 188 COG0583 LysR, Transcriptional regulator Transcription 148545358 Common - protein of unknown function DUF1458 Pput_0101 38 COG3360 COG3360, Uncharacterized conserved protein Function unknown 148547396 Common - ABC transporter related Pput_2175 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 148546842 Common - coproporphyrinogen III oxidase Pput_1604 203 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 148547429 Common - major facilitator superfamily MFS_1 Pput_2208 61 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148548976 Common - aspartate-semialdehyde dehydrogenase Pput_3770 200 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 148550153 Common aroB 3-dehydroquinate synthase Pput_4951 206 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 148549758 Common - hypothetical protein Pput_4556 235 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 148549191 Common minC septum formation inhibitor Pput_3985 97 COG0850 MinC, Septum formation inhibitor Cell division and chromosome partitioning 148548276 Common - protein of unknown function DUF403 Pput_3066 82 COG2307 COG2307, Uncharacterized protein conserved in bacteria Function unknown 148547990 Common - protein of unknown function DUF1275 Pput_2776 5 COG3619 COG3619, Predicted membrane protein Function unknown 148548978 Common - Methyltransferase type 11 Pput_3772 201 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 148550399 Common pyrE orotate phosphoribosyltransferase Pput_5199 123 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 148547848 Common - hypothetical protein Pput_2632 4 COG3913 SciT, Uncharacterized protein conserved in bacteria Function unknown 148548735 Common - helix-turn-helix- domain containing protein, AraC type Pput_3527 75 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148546584 Common - Glutamate--putrescine ligase Pput_1342 230 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 148549622 Common - Colicin immunity protein/pyocin immunity protein Pput_4420 8 None None None 148550357 Common - hypothetical protein Pput_5157 1 None None None 148545651 Common - acyl-CoA dehydrogenase domain protein Pput_0396 148 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148546343 Common - amino acid permease-associated region Pput_1100 181 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 148547032 Common - glycoside hydrolase 15-related Pput_1797 72 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 148546910 Common - hypothetical protein Pput_1672 5 None None None 148545560 Common - hypothetical protein Pput_0305 72 COG2924 COG2924, Uncharacterized protein conserved in bacteria Function unknown 148548269 Common - peptidase M19, renal dipeptidase Pput_3059 99 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 148550123 Common - chorismate mutase, putative Pput_4921 11 COG1605 PheA, Chorismate mutase Amino acid transport and metabolism 148549149 Common cmk cytidylate kinase Pput_3943 206 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 148546075 Common - glycoprotein Pput_0830 151 None None None 148546045 Common - phosphate acetyltransferase Pput_0799 163 COG0280 Pta, Phosphotransacetylase Energy production and conversion 148547725 Common - glutamate--cysteine ligase, GCS2 Pput_2508 59 COG2170 COG2170, Uncharacterized conserved protein Function unknown 148548353 Common - transcriptional regulator, LysR family Pput_3143 191 COG0583 LysR, Transcriptional regulator Transcription 148547491 Common - Magnesium chelatase Pput_2270 69 COG1239 ChlI, Mg-chelatase subunit ChlI Coenzyme metabolism 148547801 Common - hypothetical protein Pput_2584 1 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 148545773 Common - short-chain dehydrogenase/reductase SDR Pput_0521 238 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 148547074 Common - hypothetical protein Pput_1839 38 COG2923 DsrF, Uncharacterized protein involved in the oxidation of intracellular sulfur Inorganic ion transport and metabolism 148549615 Common - helix-turn-helix- domain containing protein, AraC type Pput_4411 148 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148549707 Common - uracil-xanthine permease Pput_4505 123 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 148549391 Common tsf elongation factor Ts Pput_4185 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 148547669 Common - UspA domain protein Pput_2451 3 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 148549154 Common mtnA methylthioribose-1-phosphate isomerase Pput_3948 130 COG0182 COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family Translation, ribosomal structure and biogenesis 148548102 Common - 4-oxalocrotonate decarboxylase Pput_2890 66 COG3971 COG3971, 2-keto-4-pentenoate hydratase Secondary metabolites biosynthesis, transport, and catabolism 148549342 Common - single-strand binding protein Pput_4136 212 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 148546137 Common - Sel1 domain protein repeat-containing protein Pput_0893 89 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 148546722 Common - N-acetylneuraminic acid synthase, N-terminal domain Pput_1483 72 COG2089 SpsE, Sialic acid synthase Cell envelope biogenesis, outer membrane 148546791 Common - phenazine biosynthesis protein PhzF family Pput_1552 119 COG0384 COG0384, Predicted epimerase, PhzC/PhzF homolog General function prediction only 148548553 Common - AMP-dependent synthetase and ligase Pput_3345 218 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 148549141 Common - dTDP-glucose 4,6-dehydratase Pput_3935 232 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 148548942 Common - hypothetical protein Pput_3736 3 None None None 148547185 Common - hypothetical protein Pput_1960 7 None None None 148547692 Common - enoyl-CoA hydratase-isomerase Pput_2475 189 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 148549833 Common - Glucarate dehydratase Pput_4631 58 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 148548424 Common - hypothetical protein Pput_3216 4 None None None 148547608 Common - integral membrane sensor signal transduction histidine kinase Pput_2387 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148546789 Nonpathogen - hypothetical protein Pput_1550 1 None None None 148545428 Common - hypothetical protein Pput_0171 1 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 148549944 Common - ABC transporter related Pput_4742 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 148549222 Common - molybdopterin oxidoreductase Pput_4016 203 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 148550281 Common - efflux transporter, RND family, MFP subunit Pput_5081 154 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148545552 Common - hypothetical protein Pput_0297 14 None None None 148546762 Common flhA flagellar biosynthesis protein A Pput_1523 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 148547114 Common - glycoside hydrolase, family 28 Pput_1884 27 COG5434 PGU1, Endopygalactorunase Cell envelope biogenesis, outer membrane 148549281 Common - 3-methyladenine DNA glycosylase-like protein Pput_4075 87 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 148546328 Common - 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase-like protein Pput_1085 36 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 148547871 Common - outer membrane autotransporter barrel domain Pput_2655 30 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148549288 Common - two component transcriptional regulator, LuxR family Pput_4082 197 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148545565 Common hisH imidazole glycerol phosphate synthase subunit HisH Pput_0310 214 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 148548420 Common - hypothetical protein Pput_3212 1 None None None 148545457 Common - RND efflux system, outer membrane lipoprotein, NodT family Pput_0200 108 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148549916 Common - protein of unknown function DUF461 Pput_4714 79 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 148546057 Common - N-acetyl-anhydromuranmyl-L-alanine amidase Pput_0812 107 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 148547661 Common - hypothetical protein Pput_2442 106 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 148545696 Common - two component transcriptional regulator, LuxR family Pput_0444 192 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148550008 Common - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase Pput_4806 168 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 148546816 Common - uracil-xanthine permease Pput_1578 127 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 148548549 Common - multi-sensor hybrid histidine kinase Pput_3341 205 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 148547707 Common - hypothetical protein Pput_2490 1 None None None 148546355 Common - extracellular solute-binding protein, family 3 Pput_1112 136 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148548450 Common - Deoxyribonuclease I Pput_3242 30 COG2356 EndA, Endonuclease I DNA replication, recombination, and repair 148546784 Common - cytochrome c-type biogenesis protein CcmF Pput_1545 122 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 148547506 Common - ABC-type branched-chain amino acid transport systems periplasmic component-like protein Pput_2285 52 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 148547542 Common - aldehyde dehydrogenase Pput_2321 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148547145 Common - hypothetical protein Pput_1918 4 None None None 148547527 Common - Aldehyde dehydrogenase (NAD(+)) Pput_2306 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148547958 Common - response regulator receiver sensor signal transduction histidine kinase Pput_2742 223 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 148548142 Common - Lytic transglycosylase, catalytic Pput_2932 43 None None None 148549324 Common - HNH endonuclease Pput_4118 21 COG1403 McrA, Restriction endonuclease Defense mechanisms 148547151 Nonpathogen - hypothetical protein Pput_1926 1 None None None 148547550 Common - 4-hydroxyphenylpyruvate dioxygenase Pput_2329 78 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 148546459 Common - two component transcriptional regulator, winged helix family Pput_1216 218 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148545974 Common - hypothetical protein Pput_0728 1 None None None 148546170 Common - two component transcriptional regulator, Fis family Pput_0927 184 COG4567 COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Signal transduction mechanisms / Transcription 148546686 Common - phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN Pput_1446 105 COG3709 COG3709, Uncharacterized component of phosphonate metabolism Inorganic ion transport and metabolism 148547729 Common - major facilitator superfamily MFS_1 Pput_2512 15 COG3202 COG3202, ATP/ADP translocase Energy production and conversion 148547189 Common - protein of unknown function DUF1615 Pput_1964 18 None None None 148549157 Common - short chain dehydrogenase Pput_3951 180 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148549113 Common - UDP-glucose 4-epimerase Pput_3907 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 148545829 Common - SNARE associated Golgi protein Pput_0579 152 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 148549469 Common - General substrate transporter Pput_4263 134 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148548090 Common - 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase Pput_2877 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148549951 Common - conserved hypothetical protein 730 Pput_4749 110 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 148547805 Common - lipopolysaccharide biosynthesis protein Pput_2588 65 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 148549074 Common - amidotransferase Pput_3868 169 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 148550493 Common - UDP-N-acetylglucosamine pyrophosphorylase Pput_5293 233 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 148546705 Common flgD flagellar basal body rod modification protein Pput_1466 108 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 148547699 Common - phenylacetate-CoA oxygenase, PaaH subunit Pput_2482 38 COG3460 COG3460, Uncharacterized enzyme of phenylacetate metabolism Secondary metabolites biosynthesis, transport, and catabolism 148547815 Common dnaE2 error-prone DNA polymerase Pput_2598 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 148546362 Common - ABC transporter related Pput_1119 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 148548994 Common - Cupin 2, conserved barrel domain protein Pput_3788 23 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 148545427 Common - hypothetical protein Pput_0170 2 None None None 148550134 Common - protein of unknown function DUF610, YibQ Pput_4932 66 COG2861 COG2861, Uncharacterized protein conserved in bacteria Function unknown 148548321 Common - hypothetical protein Pput_3111 11 COG4244 COG4244, Predicted membrane protein Function unknown 148550379 Common dadX alanine racemase Pput_5179 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 148546539 Common - protein of unknown function DUF1705 Pput_1296 65 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 148546469 Nonpathogen - hypothetical protein Pput_1226 7 COG3351 FlaD, Putative archaeal flagellar protein D/E Cell motility and secretion 148546552 Common - transcriptional regulator, LysR family Pput_1310 189 COG0583 LysR, Transcriptional regulator Transcription 148547715 Common - hypothetical protein Pput_2498 1 None None None 148548149 Common - NUDIX hydrolase Pput_2939 2 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 148547081 Common - type III effector Hrp-dependent outer Pput_1847 53 COG3395 COG3395, Uncharacterized protein conserved in bacteria Function unknown 148545549 Common - hypothetical protein Pput_0293 22 COG5606 COG5606, Uncharacterized conserved small protein Function unknown 148548643 Common - methylcitrate synthase Pput_3435 194 COG0372 GltA, Citrate synthase Energy production and conversion 148547273 Common - short-chain dehydrogenase/reductase SDR Pput_2051 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148546488 Common ruvA Holliday junction DNA helicase motor protein Pput_1245 208 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 148546544 Common - hypothetical protein Pput_1301 74 COG2983 COG2983, Uncharacterized conserved protein Function unknown 148546759 Nonpathogen - hypothetical protein Pput_1520 5 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 148546198 Common - Lysine exporter protein (LYSE/YGGA) Pput_0955 79 COG1279 COG1279, Lysine efflux permease General function prediction only 148546750 Common fliP flagellar biosynthesis protein FliP Pput_1511 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 148546515 Common - hypothetical protein Pput_1272 1 None None None 148547537 Common - integral membrane sensor signal transduction histidine kinase Pput_2316 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148547131 Common - protein of unknown function DUF81 Pput_1901 118 COG0730 COG0730, Predicted permeases General function prediction only 148545979 Common - anti-FecI sigma factor, FecR Pput_0733 43 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 148550084 Common - poly(hydroxyalkanoate) granule-associated protein Pput_4882 19 None None None 148548621 Common - hypothetical protein Pput_3413 1 None None None 148545557 Common - GABA permease Pput_0302 149 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 148549809 Nonpathogen - hypothetical protein Pput_4607 1 None None None 148545665 Common - hypothetical protein Pput_0410 4 None None None 148546639 Common - protein of unknown function DUF6, transmembrane Pput_1399 32 COG2962 RarD, Predicted permeases General function prediction only 148548459 Common - sodium:dicarboxylate symporter Pput_3251 121 COG3633 SstT, Na+/serine symporter Amino acid transport and metabolism 148545580 Common - transcriptional regulator, AraC family Pput_0325 134 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148548504 Common - hypothetical protein Pput_3296 13 COG3219 COG3219, Uncharacterized protein conserved in bacteria Function unknown 148550337 Common dapF diaminopimelate epimerase Pput_5137 203 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 148545332 Common - D,D-heptose 1,7-bisphosphate phosphatase Pput_0075 128 COG0241 HisB, Histidinol phosphatase and related phosphatases Amino acid transport and metabolism 148550361 Common - protein of unknown function DUF894, DitE Pput_5161 106 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148546335 Common - type II secretion system protein I/J Pput_1092 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 148547700 Common - phenylacetate-CoA oxygenase, PaaI subunit Pput_2483 42 COG3396 COG3396, Uncharacterized conserved protein Function unknown 148546668 Common acsA acetyl-CoA synthetase Pput_1428 213 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 148549763 Common - putative two component, sigma54 specific, transcriptional regulator, Fis family Pput_4561 221 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148550409 Common - transcriptional regulator, LysR family Pput_5209 120 COG0583 LysR, Transcriptional regulator Transcription 148545542 Common - integral membrane sensor signal transduction histidine kinase Pput_0286 197 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148547020 Common - glycogen branching enzyme Pput_1785 145 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 148545769 Common - major facilitator superfamily MFS_1 Pput_0517 219 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148550388 Common - aldehyde dehydrogenase Pput_5188 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148549103 Common - hypothetical protein Pput_3897 2 None None None 148549079 Common - hypothetical protein Pput_3873 5 None None None 148546377 Common - electron transport complex, RnfABCDGE type, G subunit Pput_1134 52 COG4659 RnfG, Predicted NADH:ubiquinone oxidoreductase, subunit RnfG Energy production and conversion 148547381 Common - transcriptional regulator, XRE family Pput_2160 31 COG1396 HipB, Predicted transcriptional regulators Transcription 148546729 Common - flagellar protein FlaG protein Pput_1490 35 COG1334 FlaG, Uncharacterized flagellar protein FlaG Cell motility and secretion 148549230 Common - major facilitator superfamily MFS_1 Pput_4024 46 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148548868 Common - DNA-binding transcriptional regulator LysR Pput_3662 181 COG0583 LysR, Transcriptional regulator Transcription 148547370 Common - methyl-accepting chemotaxis sensory transducer Pput_2149 137 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148548916 Common - ATPase associated with various cellular activities, AAA_3 Pput_3710 179 COG0714 COG0714, MoxR-like ATPases General function prediction only 148545600 Common - sarcosine oxidase, beta subunit family Pput_0345 124 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148549061 Common - OsmC family protein Pput_3855 96 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 148548930 Common - hypothetical protein Pput_3724 46 COG4447 COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor General function prediction only 148550483 Common - major facilitator superfamily MFS_1 Pput_5283 218 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148549789 Common - hypothetical protein Pput_4587 1 None None None 148546532 Common - molybdenum cofactor biosynthesis protein B Pput_1289 186 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 148548005 Common - hypothetical protein Pput_2791 1 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 148547172 Common - cytochrome c, class I Pput_1947 62 COG2863 COG2863, Cytochrome c553 Energy production and conversion 148550510 Common - protein of unknown function DUF37 Pput_5310 183 COG0759 COG0759, Uncharacterized conserved protein Function unknown 148549417 Common - Extensin family protein Pput_4211 37 COG3921 COG3921, Uncharacterized protein conserved in bacteria Function unknown 148546303 Common - glucose-6-phosphate 1-dehydrogenase Pput_1060 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 148546448 Common - NAD-dependent epimerase/dehydratase Pput_1205 113 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 148549932 Common - transcriptional regulator, AraC family Pput_4730 79 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148550205 Common - hypothetical protein Pput_5003 7 None None None 148545879 Nonpathogen - hypothetical protein Pput_0629 1 None None None 148549899 Common purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Pput_4697 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 148546920 Common - hypothetical protein Pput_1682 43 None None None 148547028 Common glgA glycogen synthase Pput_1793 145 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 148547888 Common - Rieske (2Fe-2S) domain protein Pput_2672 63 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 148546658 Common - transcriptional regulator, LysR family Pput_1418 180 COG0583 LysR, Transcriptional regulator Transcription 148550169 Common - alanine racemase domain protein Pput_4967 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 148549510 Common - hypothetical protein Pput_4304 12 None None None 148547274 Common - transcriptional regulator, LysR family Pput_2052 177 COG0583 LysR, Transcriptional regulator Transcription 148548674 Common - histone family protein DNA-binding protein Pput_3466 210 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 148546005 Common - Tetratricopeptide TPR_2 repeat protein Pput_0759 116 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 148548511 Common - major facilitator superfamily MFS_1 Pput_3303 103 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148546849 Common - Cbb3-type cytochrome oxidase component Pput_1611 12 COG4736 CcoQ, Cbb3-type cytochrome oxidase, subunit 3 Posttranslational modification, protein turnover, chaperones 148549239 Common - glutathione peroxidase Pput_4033 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 148548918 Common - hypothetical protein Pput_3712 1 None None None 148548014 Common - exonuclease III Pput_2800 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 148549717 Common - Xanthine/uracil/vitamin C permease Pput_4515 134 COG2252 COG2252, Permeases General function prediction only 148547872 Common - Lysine exporter protein (LYSE/YGGA) Pput_2656 115 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148546497 Common - Radical SAM domain protein Pput_1254 126 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 148549247 Common cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase Pput_4041 126 COG2087 CobU, Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase Coenzyme metabolism 148547618 Common - hypothetical protein Pput_2397 239 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 148546151 Common - hypothetical protein Pput_0908 3 None None None 148549053 Common - DEAD/DEAH box helicase domain protein Pput_3847 228 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 148546567 Common - hypothetical protein Pput_1325 15 None None None 148545682 Common - hypothetical protein Pput_0430 71 COG2718 COG2718, Uncharacterized conserved protein Function unknown 148546983 Common - NADH dehydrogenase subunit B Pput_1745 192 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 148548112 Common - propionate--CoA ligase Pput_2900 214 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 148546837 Common - DNA polymerase III subunits gamma and tau Pput_1599 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 148549922 Common - inner-membrane translocator Pput_4720 90 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 148549550 Common - metabolite/H+ symporter, major facilitator superfamily (MFS) Pput_4345 131 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148550437 Common - phosphate binding protein Pput_5237 121 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 148547498 Common - hypothetical protein Pput_2277 1 None None None 148549083 Common - hypothetical protein Pput_3877 1 None None None 148549378 Common rnhB ribonuclease HII Pput_4172 239 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 148548490 Common - diguanylate cyclase Pput_3282 179 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 148546086 Common - protein of unknown function UPF0153 Pput_0842 20 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 148546393 Common - metal-dependent hydrolase Pput_1150 77 COG2872 COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain General function prediction only 148545646 Common - biotin biosynthesis protein BioC Pput_0391 173 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 148549592 Common murG N-acetylglucosaminyl transferase Pput_4387 208 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 148546572 Common - peptide deformylase Pput_1330 213 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 148547388 Common - phosphate ABC transporter, ATPase subunit Pput_2167 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 148547794 Common - glycosyl transferase, family 2 Pput_2577 23 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 148549347 Nonpathogen - hypothetical protein Pput_4141 1 None None None 148549274 Common - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pput_4068 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 148545421 Common - Integral membrane protein TerC Pput_0164 113 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 148548416 Common - putative thiol-disulphide oxidoreductase DCC Pput_3208 24 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 148549354 Nonpathogen - hypothetical protein Pput_4148 2 None None None 148545872 Common - helix-turn-helix- domain containing protein, AraC type Pput_0622 71 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148545892 Common - integral membrane protein MviN Pput_0642 197 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 148550317 Common - hypothetical protein Pput_5117 5 COG3692 COG3692, Uncharacterized protein conserved in bacteria Function unknown 148546974 Common - NADH dehydrogenase subunit L Pput_1736 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 148546471 Common - MiaB-like tRNA modifying enzyme YliG Pput_1228 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 148550460 Common uvrD DNA-dependent helicase II Pput_5260 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 148545707 Common trpC indole-3-glycerol-phosphate synthase Pput_0455 219 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 148550065 Common - methyl-accepting chemotaxis sensory transducer Pput_4863 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148547369 Common - putative transcriptional regulator, GntR family Pput_2148 172 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 148548851 Common - dihydroorotate dehydrogenase 2 Pput_3645 232 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 148548606 Common - putative phage repressor Pput_3398 19 COG2932 COG2932, Predicted transcriptional regulator Transcription 148546184 Common - integral membrane sensor signal transduction histidine kinase Pput_0941 215 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148545826 Common - hypothetical protein Pput_0576 6 COG2932 COG2932, Predicted transcriptional regulator Transcription 148545733 Common - DNA-directed RNA polymerase subunit beta' Pput_0481 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 148546210 Common - amino acid permease-associated region Pput_0967 174 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 148546257 Common - putative SAM-dependent methyltransferase Pput_1014 29 COG3129 COG3129, Predicted SAM-dependent methyltransferase General function prediction only 148548939 Common - 1-aminocyclopropane-1-carboxylate deaminase-like protein Pput_3733 21 COG2515 Acd, 1-aminocyclopropane-1-carboxylate deaminase Amino acid transport and metabolism 148546227 Common fumC fumarate hydratase Pput_0984 215 COG0114 FumC, Fumarase Energy production and conversion 148545279 Common - outer membrane efflux protein Pput_0020 49 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148548409 Common - outer membrane porin Pput_3201 7 None None None 148545507 Common - NAD(P)H-dependent FMN reductase Pput_0251 56 COG0431 COG0431, Predicted flavoprotein General function prediction only 148546830 Common - chromosome segregation protein SMC Pput_1592 176 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 148550233 Common - putative prophage repressor Pput_5031 146 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 148548890 Common - sodium:dicarboxylate symporter Pput_3684 159 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 148545700 Common - binding-protein-dependent transport systems inner membrane component Pput_0448 173 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 148548595 Common - hypothetical protein Pput_3387 1 None None None 148546168 Common - protein of unknown function DUF541 Pput_0925 22 COG3471 COG3471, Predicted periplasmic/secreted protein Function unknown 148548328 Common - fumarate reductase/succinate dehydrogenase flavoprotein domain protein Pput_3118 46 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 148550101 Common - glucosyltransferase MdoH Pput_4899 54 COG2943 MdoH, Membrane glycosyltransferase Cell envelope biogenesis, outer membrane 148546873 Common - GAD-like protein Pput_1635 10 COG5620 COG5620, Uncharacterized conserved protein Function unknown 148547440 Common - anti-FecI sigma factor, FecR Pput_2219 44 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 148547581 Common - protein of unknown function DUF1652 Pput_2360 1 None None None 148548164 Common - hypothetical protein Pput_2954 22 None None None 148545763 Common rpsD 30S ribosomal protein S4 Pput_0511 221 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 148546922 Common - ABC transporter related Pput_1684 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 148549087 Common - alpha/beta hydrolase fold Pput_3881 31 COG2267 PldB, Lysophospholipase Lipid metabolism 148546069 Common - protein of unknown function UPF0153 Pput_0824 2 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 148547850 Common - protein of unknown function DUF796 Pput_2634 30 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 148548886 Common - putative transcriptional regulator, MerR family Pput_3680 97 COG0789 SoxR, Predicted transcriptional regulators Transcription 148547648 Common - hypothetical protein Pput_2428 3 None None None 148547913 Common - hypothetical protein Pput_2697 5 None None None 148545797 Common - hypothetical protein Pput_0547 1 COG3126 COG3126, Uncharacterized protein conserved in bacteria Function unknown 148545519 Common - alpha-L-glutamate ligase, RimK family Pput_0263 148 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 148550093 Common tatB sec-independent translocase Pput_4891 19 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 148548193 Nonpathogen - hypothetical protein Pput_2983 1 None None None 148549574 Common - AmpG-related permease Pput_4369 101 None None None 148548761 Common - formate dehydrogenase subunit gamma Pput_3554 148 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 148550106 Common - imidazolonepropionase Pput_4904 118 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 148548175 Common - hypothetical protein Pput_2965 3 None None None 148548601 Common - hypothetical protein Pput_3393 10 None None None 148548991 Common - drug resistance transporter, EmrB/QacA subfamily Pput_3785 177 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148546882 Common - hypothetical protein Pput_1644 3 None None None 148549557 Common - methyl-accepting chemotaxis sensory transducer Pput_4352 145 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148545450 Common - binding-protein-dependent transport systems inner membrane component Pput_0193 150 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 148549386 Common - 1-deoxy-D-xylulose 5-phosphate reductoisomerase Pput_4180 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 148549798 Common - ferric uptake regulator, Fur family Pput_4596 185 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 148549875 Common - lytic murein transglycosylase Pput_4673 104 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 148548124 Common - phage transcriptional regulator, AlpA Pput_2913 31 COG3311 AlpA, Predicted transcriptional regulator Transcription 148548572 Common - hypothetical protein Pput_3364 3 None None None 148546831 Common zipA cell division protein ZipA Pput_1593 45 COG3115 ZipA, Cell division protein Cell division and chromosome partitioning 148548256 Nonpathogen - hypothetical protein Pput_3046 1 None None None 148547923 Common - NAD-dependent epimerase/dehydratase Pput_2707 156 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 148546623 Common - protein of unknown function DUF6, transmembrane Pput_1383 124 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 148548579 Common - hypothetical protein Pput_3371 5 None None None 148545656 Common - pyrroloquinoline quinone biosynthesis protein PqqE Pput_0401 164 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 148545303 Nonpathogen - hypothetical protein Pput_0046 1 None None None 148547201 Common - phage integrase family protein Pput_1978 69 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 148548596 Nonpathogen - hypothetical protein Pput_3388 1 None None None 148545574 Common - hypothetical protein Pput_0319 2 None None None 148546276 Common - sodium/glutamate symporter Pput_1033 51 COG0786 GltS, Na+/glutamate symporter Amino acid transport and metabolism 148548052 Common - protein of unknown function DUF899, thioredoxin family protein Pput_2838 28 COG4312 COG4312, Uncharacterized protein conserved in bacteria Function unknown 148546827 Common - Xanthine dehydrogenase, molybdopterin binding subunit Pput_1589 111 COG4631 XdhB, Xanthine dehydrogenase, molybdopterin-binding subunit B Nucleotide transport and metabolism 148549491 Common - pyridoxal phosphate biosynthetic protein PdxJ Pput_4285 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 148549169 Common mnmC 5-methylaminomethyl-2-thiouridine methyltransferase Pput_3963 89 COG4121 COG4121, Uncharacterized conserved protein Function unknown 148550445 Common - hypothetical protein Pput_5245 1 None None None 148547631 Common - TonB-dependent receptor Pput_2410 112 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 148547322 Common - transcriptional regulator, LysR family Pput_2101 177 COG0583 LysR, Transcriptional regulator Transcription 148545648 Common - hypothetical protein Pput_0393 1 None None None 148549104 Common - competence protein ComEA helix-hairpin-helix repeat protein Pput_3898 91 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 148550100 Common - extracellular solute-binding protein, family 3 Pput_4898 179 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148547470 Common - hypothetical protein Pput_2249 4 None None None 148546106 Common queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase Pput_0862 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 148547901 Common - hypothetical protein Pput_2685 14 None None None 148549512 Common - putative ammonia monooxygenase Pput_4306 55 COG3180 AbrB, Putative ammonia monooxygenase General function prediction only 148549647 Common - membrane bound O-acyl transferase, MBOAT family protein Pput_4445 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 148546841 Common - putative transcriptional regulator, Crp/Fnr family Pput_1603 164 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 148545890 Common - Mammalian cell entry related domain protein Pput_0640 56 COG3008 PqiB, Paraquat-inducible protein B General function prediction only 148550180 Common - sulfur carrier protein ThiS Pput_4978 75 COG2104 ThiS, Sulfur transfer protein involved in thiamine biosynthesis Coenzyme metabolism 148547141 Common - Sterol-binding domain protein Pput_1911 22 COG3255 COG3255, Putative sterol carrier protein Lipid metabolism 148550152 Common - Sporulation domain protein Pput_4950 29 COG3267 ExeA, Type II secretory pathway, component ExeA (predicted ATPase) Intracellular trafficking and secretion 148545785 Common - dTDP-4-dehydrorhamnose reductase Pput_0535 143 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 148545995 Common - RND efflux system, outer membrane lipoprotein, NodT family Pput_0749 109 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148547883 Common - hypothetical protein Pput_2667 37 COG4447 COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor General function prediction only 148549866 Common - hypothetical protein Pput_4664 198 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 148548084 Common - response regulator receiver protein Pput_2871 219 COG4566 TtrR, Response regulator Signal transduction mechanisms 148548912 Common - dihydrodipicolinate synthetase Pput_3706 234 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 148549757 Common - sugar fermentation stimulation protein A Pput_4555 108 COG1489 SfsA, DNA-binding protein, stimulates sugar fermentation General function prediction only 148550220 Nonpathogen - hypothetical protein Pput_5018 1 None None None 148545903 Common - hypothetical protein Pput_0653 220 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 148550109 Common - urocanate hydratase Pput_4907 97 COG2987 HutU, Urocanate hydratase Amino acid transport and metabolism 148545900 Common - hypothetical protein Pput_0650 1 COG4726 PilX, Tfp pilus assembly protein PilX Cell motility and secretion / Intracellular trafficking and secretion 148546893 Common - OmpA/MotB domain protein Pput_1655 172 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 148550239 Nonpathogen - hypothetical protein Pput_5039 1 None None None 148548630 Nonpathogen - hypothetical protein Pput_3422 1 None None None 148546887 Common - helix-turn-helix domain protein Pput_1649 16 COG2944 COG2944, Predicted transcriptional regulator Transcription 148548797 Common - soluble pyridine nucleotide transhydrogenase Pput_3591 241 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 148549639 Common - GDP-mannose 6-dehydrogenase Pput_4437 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 148550147 Common - major facilitator superfamily MFS_1 Pput_4945 169 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148546869 Common - (2Fe-2S)-binding domain protein Pput_1631 120 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 148547941 Common - Protein involved in meta-pathway of phenol degradation-like protein Pput_2725 17 COG4313 COG4313, Protein involved in meta-pathway of phenol degradation Energy production and conversion 148548955 Common - histidine kinase Pput_3749 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148549487 Common - putative methyltransferase Pput_4281 57 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 148545619 Common aceE pyruvate dehydrogenase subunit E1 Pput_0364 130 COG2609 AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component Energy production and conversion 148550127 Common - RNA methyltransferase, TrmH family, group 2 Pput_4925 162 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 148546399 Common - hypothetical protein Pput_1156 9 None None None 148547165 Common - molybdate ABC transporter, ATPase subunit Pput_1940 249 COG4148 ModC, ABC-type molybdate transport system, ATPase component Inorganic ion transport and metabolism 148547895 Common - hypothetical protein Pput_2679 1 None None None 148548526 Common - acyltransferase 3 Pput_3318 79 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 148549273 Common - multi-sensor hybrid histidine kinase Pput_4067 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148549048 Common - methionine sulfoxide reductase B Pput_3842 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 148546152 Nonpathogen - Glyoxalase/bleomycin resistance protein/dioxygenase Pput_0909 3 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 148547789 Common - Undecaprenyl-phosphate galactose phosphotransferase Pput_2572 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 148550016 Common - Mig-14 family protein Pput_4814 5 COG5653 COG5653, Protein involved in cellulose biosynthesis (CelD) Cell envelope biogenesis, outer membrane 148546858 Common - protein of unknown function DUF1255 Pput_1620 52 COG3123 COG3123, Uncharacterized protein conserved in bacteria Function unknown 148548374 Common - transcriptional regulator, LysR family Pput_3164 156 COG0583 LysR, Transcriptional regulator Transcription 148545342 Common - DNA protecting protein DprA Pput_0085 209 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 148548213 Common - inner-membrane translocator Pput_3003 123 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 148548841 Common - membrane protein-like protein Pput_3635 2 COG5393 COG5393, Predicted membrane protein Function unknown 148548224 Common - putative PAS/PAC sensor protein Pput_3014 87 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 148546024 Common - hypothetical protein Pput_0778 5 None None None 148548729 Common - Enoyl-CoA hydratase/isomerase Pput_3521 188 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 148545882 Common - short chain dehydrogenase Pput_0632 170 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148546109 Common secD preprotein translocase subunit SecD Pput_0865 206 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 148548187 Common - Beta-ketoacyl synthase-like protein Pput_2977 209 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148547658 Common - hypothetical protein Pput_2438 20 None None None 148545899 Common - Tfp pilus assembly protein PilW-like protein Pput_0649 1 COG4966 PilW, Tfp pilus assembly protein PilW Cell motility and secretion / Intracellular trafficking and secretion 148548076 Common - Alcohol dehydrogenase, zinc-binding domain protein Pput_2862 184 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 148548577 Common - hypothetical protein Pput_3369 4 None None None 148549318 Common - hypothetical protein Pput_4112 5 None None None 148548340 Common - amino acid permease-associated region Pput_3130 157 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 148548967 Common - amidophosphoribosyltransferase Pput_3761 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 148547169 Common - hypothetical protein Pput_1944 1 None None None 148548755 Common - protein of unknown function DUF883, ElaB Pput_3548 3 COG4575 ElaB, Uncharacterized conserved protein Function unknown 148549217 Common - fumarylacetoacetate (FAA) hydrolase Pput_4011 179 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 148545381 Common - hypothetical protein Pput_0124 54 COG3346 COG3346, Uncharacterized conserved protein Function unknown 148549185 Common - Exo-beta-1 3-glucanase-like protein Pput_3979 14 COG5309 COG5309, Exo-beta-1,3-glucanase Carbohydrate transport and metabolism 148549337 Common - putative phage repressor Pput_4131 32 COG2932 COG2932, Predicted transcriptional regulator Transcription 148548074 Common - putative transcriptional regulator, GntR family Pput_2860 50 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 148546486 Common - hypothetical protein Pput_1243 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 148548438 Common - Inosine/uridine-preferring nucleoside hydrolase Pput_3230 89 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 148547579 Common - alpha/beta hydrolase fold Pput_2358 34 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148548242 Common - Hemerythrin HHE cation binding domain protein Pput_3032 10 COG2846 COG2846, Regulator of cell morphogenesis and NO signaling Cell division and chromosome partitioning 148547666 Common - protein of unknown function DUF395, YeeE/YedE Pput_2448 68 COG2391 COG2391, Predicted transporter component General function prediction only 148548570 Common - hypothetical protein Pput_3362 5 None None None 148547287 Common pssA phosphatidylserine synthase Pput_2065 36 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 148550179 Common thiG thiazole synthase Pput_4977 166 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 148548629 Nonpathogen - hypothetical protein Pput_3421 1 None None None 148547825 Common - regulatory protein, IclR Pput_2608 64 COG1414 IclR, Transcriptional regulator Transcription 148547160 Common - PAS/PAC sensor signal transduction histidine kinase Pput_1935 220 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 148547477 Common - hypothetical protein Pput_2256 1 None None None 148550457 Common - transcriptional regulator, LysR family Pput_5257 193 COG0583 LysR, Transcriptional regulator Transcription 148548802 Common - Non-specific serine/threonine protein kinase Pput_3596 123 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 148548516 Common - hypothetical protein Pput_3308 3 None None None 148546042 Common - histidine kinase Pput_0796 130 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148547589 Common - hypothetical protein Pput_2368 6 None None None 148548497 Common - shikimate 5-dehydrogenase Pput_3289 201 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 148548650 Common - phosphoadenosine phosphosulfate reductase Pput_3442 154 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 148549987 Common - phosphoserine phosphatase SerB Pput_4785 160 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 148549587 Common - cell division protein FtsZ Pput_4382 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 148546542 Common - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pput_1299 208 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 148545866 Common - hypothetical protein Pput_0616 2 None None None 148546651 Common - intracellular septation protein A Pput_1411 88 COG2917 COG2917, Intracellular septation protein A Cell division and chromosome partitioning 148546021 Common - hypoxanthine-guanine phosphoribosyltransferase Pput_0775 127 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 148549841 Common - histone deacetylase superfamily Pput_4639 162 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 148547760 Common - N-ethylmaleimide reductase, FMN-linked Pput_2543 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 148546017 Common - NAD-dependent epimerase/dehydratase Pput_0771 107 COG1090 COG1090, Predicted nucleoside-diphosphate sugar epimerase General function prediction only 148546180 Nonpathogen - hypothetical protein Pput_0937 3 None None None 148549289 Common - DTW domain containing protein Pput_4083 35 COG3148 COG3148, Uncharacterized conserved protein Function unknown 148546737 Common fliF flagellar MS-ring protein Pput_1498 125 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 148546090 Common - TonB-dependent siderophore receptor Pput_0846 105 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148545767 Common - bacterioferritin Pput_0515 100 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 148548136 Nonpathogen - hypothetical protein Pput_2926 1 None None None 148546120 Common hscA chaperone protein HscA Pput_0876 234 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 148549591 Common murC UDP-N-acetylmuramate--L-alanine ligase Pput_4386 211 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 148548610 Nonpathogen - hypothetical protein Pput_3402 1 None None None 148550195 Common - transcriptional regulator, TetR family Pput_4993 45 COG1309 AcrR, Transcriptional regulator Transcription 148546123 Common - Nucleoside-diphosphate kinase Pput_0879 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 148549498 Common - sigma E regulatory protein, MucB/RseB Pput_4292 48 COG3026 RseB, Negative regulator of sigma E activity Signal transduction mechanisms 148548659 Common - Arylesterase Pput_3451 104 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 148548943 Common - Alcohol dehydrogenase, zinc-binding domain protein Pput_3737 173 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 148549682 Common - fumarylacetoacetase Pput_4480 62 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 148546179 Common - hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit Pput_0936 148 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 148548360 Common - UvrD/REP helicase Pput_3150 138 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 148548923 Common - nuclease SbcCD, D subunit Pput_3717 102 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 148547099 Common - Na+/H+ antiporter NhaA Pput_1868 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 148550206 Common - sodium:dicarboxylate symporter Pput_5004 152 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 148549931 Common - PsiF repeat protein Pput_4729 22 None None None 148546479 Common - histidine triad (HIT) protein Pput_1236 57 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 148547572 Common - protein of unknown function DUF1272 Pput_2351 24 COG3813 COG3813, Uncharacterized protein conserved in bacteria Function unknown 148548311 Common - aldehyde dehydrogenase Pput_3101 59 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148546421 Common - diguanylate cyclase/phosphodiesterase Pput_1178 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148546428 Nonpathogen - protein of unknown function DUF1656 Pput_1185 1 None None None 148548263 Common - Domain of unknown function DUF1852 Pput_3053 24 None None None 148546089 Common - anti-FecI sigma factor, FecR Pput_0845 43 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 148547931 Common - GCN5-related N-acetyltransferase Pput_2715 36 COG0456 RimI, Acetyltransferases General function prediction only 148548368 Common - diguanylate cyclase with PAS/PAC sensor Pput_3158 180 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 148547521 Common - hypothetical protein Pput_2300 1 None None None 148550505 Common gidB glucose-inhibited division protein B Pput_5305 204 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 148549970 Common - HflK protein Pput_4768 216 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 148546826 Common - Xanthine dehydrogenase accessory protein XdhC Pput_1588 98 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 148548043 Common - nicotinamide mononucleotide transporter PnuC Pput_2829 56 COG3201 PnuC, Nicotinamide mononucleotide transporter Coenzyme metabolism 148548294 Common - Pyrrolo-quinoline quinone Pput_3084 82 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 148550167 Common - NLP/P60 protein Pput_4965 152 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 148548202 Common - inner-membrane translocator Pput_2992 109 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 148545357 Common - protein of unknown function DUF883, ElaB Pput_0100 9 COG4575 ElaB, Uncharacterized conserved protein Function unknown 148546245 Common - BolA family protein Pput_1002 52 COG5007 COG5007, Predicted transcriptional regulator, BolA superfamily Transcription 148545739 Common rplC 50S ribosomal protein L3 Pput_0487 237 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 148546758 Common - Cys/Met metabolism pyridoxal-phosphate-dependent enzyme Pput_1519 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 148547839 Common - protein of unknown function DUF877 Pput_2623 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 148547083 Common - pyruvate kinase Pput_1849 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 148546942 Common - hypothetical protein Pput_1704 5 None None None 148547580 Common - Pirin domain protein Pput_2359 146 COG1741 COG1741, Pirin-related protein General function prediction only 148545468 Common - HemY domain protein Pput_0211 55 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 148550079 Common - poly(R)-hydroxyalkanoic acid synthase, class II Pput_4877 73 COG3243 PhaC, Poly(3-hydroxyalkanoate) synthetase Lipid metabolism 148549266 Common - hypothetical protein Pput_4060 30 COG3122 COG3122, Uncharacterized protein conserved in bacteria Function unknown 148548925 Common - Glutathione S-transferase, N-terminal domain Pput_3719 41 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148549041 Common - fimbrial biogenesis outer membrane usher protein Pput_3835 34 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 148549975 Common - N-acetylmuramoyl-L-alanine amidase Pput_4773 179 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 148546695 Common - Glutamate--putrescine ligase Pput_1455 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 148549162 Common - hypothetical protein Pput_3956 107 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 148546800 Common - SAM-dependent methyltransferase-like protein Pput_1561 137 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 148548309 Common - d-galactonate transporter Pput_3099 206 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148549980 Common - oligoribonuclease Pput_4778 88 COG1949 Orn, Oligoribonuclease (3'->5' exoribonuclease) RNA processing and modification 148548411 Common - LmbE family protein Pput_3203 23 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 148550234 Nonpathogen - hypothetical protein Pput_5032 3 None None None 148548707 Common - protein of unknown function DUF6, transmembrane Pput_3499 60 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 148545742 Common rplB 50S ribosomal protein L2 Pput_0490 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 148545760 Common - ribosomal protein L36 Pput_0508 139 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 148546967 Common - regulatory protein, LuxR Pput_1729 102 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 148547767 Common - major facilitator superfamily MFS_1 Pput_2550 186 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148549523 Common - hypothetical protein Pput_4318 32 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 148545923 Common - Prepilin peptidase Pput_0673 128 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 148547241 Common - DNA-binding transcriptional dual regulator, glycolate-binding Pput_2019 58 COG2186 FadR, Transcriptional regulators Transcription 148550488 Common - regulatory protein, IclR Pput_5288 120 COG1414 IclR, Transcriptional regulator Transcription 148548163 Common - protein of unknown function DUF1527 Pput_2953 22 None None None 148546522 Common - malate:quinone oxidoreductase Pput_1279 56 COG0579 COG0579, Predicted dehydrogenase General function prediction only 148549409 Common - glycerol-3-phosphate acyltransferase Pput_4203 48 COG2937 PlsB, Glycerol-3-phosphate O-acyltransferase Lipid metabolism 148545394 Common - periplasmic solute binding protein Pput_0137 169 COG4531 ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 148549301 Common - hypothetical protein Pput_4095 2 None None None 148545608 Common - hypothetical protein Pput_0353 10 None None None 148545948 Common glyA serine hydroxymethyltransferase Pput_0702 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 148547528 Common - Domain of unknown function DUF1928 Pput_2307 5 None None None 148550170 Common - pyrroline-5-carboxylate reductase Pput_4968 216 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 148547515 Common - Type II secretory pathway pseudopilin PulG-like protein Pput_2294 13 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 148547046 Common - hypothetical protein Pput_1811 12 None None None 148548713 Common - hypothetical protein Pput_3505 1 None None None 148545626 Common - lipopolysaccharide kinase Pput_0371 9 None None None 148545412 Common gltP glutamate/aspartate:proton symporter Pput_0155 161 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 148549201 Common - binding-protein-dependent transport systems inner membrane component Pput_3995 156 COG4132 COG4132, ABC-type uncharacterized transport system, permease component General function prediction only 148546600 Common - protein of unknown function DUF453 Pput_1360 55 COG2828 COG2828, Uncharacterized protein conserved in bacteria Function unknown 148548683 Common - binding-protein-dependent transport systems inner membrane component Pput_3475 164 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 148545817 Common - integral membrane sensor signal transduction histidine kinase Pput_0567 210 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148546743 Common - response regulator receiver protein Pput_1504 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148548345 Common - hypothetical protein Pput_3135 1 None None None 148549323 Common - hypothetical protein Pput_4117 4 COG3728 XtmA, Phage terminase, small subunit DNA replication, recombination, and repair 148549685 Common - hypothetical protein Pput_4483 1 None None None 148545478 Common - protein of unknown function DUF107 Pput_0221 71 COG1030 NfeD, Membrane-bound serine protease (ClpP class) Posttranslational modification, protein turnover, chaperones 148545622 Common - lipopolysaccharide heptosyltransferase I Pput_0367 82 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 148547256 Common - extracellular solute-binding protein, family 3 Pput_2034 16 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148549859 Common - integral membrane sensor signal transduction histidine kinase Pput_4657 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148545568 Common - imidazole glycerol phosphate synthase subunit HisF Pput_0313 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 148548190 Nonpathogen - hypothetical protein Pput_2980 1 None None None 148547194 Common - hypothetical protein Pput_1969 5 None None None 148546767 Common - chemotaxis phosphatase, CheZ Pput_1528 45 COG3143 CheZ, Chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148549036 Common - hypothetical protein Pput_3830 2 None None None 148548743 Common - alpha/beta hydrolase fold Pput_3536 158 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148546206 Common - Putative hemolysin-like protein Pput_0963 61 COG3176 COG3176, Putative hemolysin General function prediction only 148546322 Common - hypothetical protein Pput_1079 50 COG3323 COG3323, Uncharacterized protein conserved in bacteria Function unknown 148549880 Common - Serine-type D-Ala-D-Ala carboxypeptidase Pput_4678 155 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 148546408 Common - pyridoxamine 5'-phosphate oxidase Pput_1165 132 COG0259 PdxH, Pyridoxamine-phosphate oxidase Coenzyme metabolism 148546900 Common - Succinate dehydrogenase, hydrophobic membrane anchor Pput_1662 52 COG2142 SdhD, Succinate dehydrogenase, hydrophobic anchor subunit Energy production and conversion 148548894 Common - hypothetical protein Pput_3688 8 None None None 148547698 Common - phenylacetate-CoA oxygenase, PaaG subunit Pput_2481 46 COG3396 COG3396, Uncharacterized conserved protein Function unknown 148545471 Common - peptidylprolyl isomerase, FKBP-type Pput_0214 128 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 148549918 Common - TonB-dependent copper receptor Pput_4716 99 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 148545998 Common - sulfate transporter Pput_0752 161 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 148550450 Common - extracellular solute-binding protein, family 1 Pput_5250 133 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 148546197 Common - Superoxide dismutase Pput_0954 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 148548700 Common - FAD dependent oxidoreductase Pput_3492 57 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148550001 Common - type I secretion outer membrane protein, TolC family Pput_4799 134 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148548140 Common - hypothetical protein Pput_2930 12 None None None 148548820 Common - integral membrane sensor signal transduction histidine kinase Pput_3614 148 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 148547293 Common - helix-turn-helix- domain containing protein, AraC type Pput_2071 69 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148548177 Common - putative transcriptional regulator, MerR family Pput_2967 136 COG0789 SoxR, Predicted transcriptional regulators Transcription 148545631 Common - TonB-dependent siderophore receptor Pput_0376 114 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148549404 Common - glycosyl transferase, family 2 Pput_4198 130 COG5309 COG5309, Exo-beta-1,3-glucanase Carbohydrate transport and metabolism 148547368 Common - Oxidoreductase FAD-binding domain protein Pput_2147 99 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 148547075 Common - hypothetical protein Pput_1840 44 COG1553 DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction Inorganic ion transport and metabolism 148547691 Common - phenylacetic acid degradation protein PaaY Pput_2474 193 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 148545388 Common - ABC transporter related Pput_0131 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 148549846 Common - protein of unknown function DUF88 Pput_4644 56 COG1432 COG1432, Uncharacterized conserved protein Function unknown 148547497 Common - protein of unknown function DUF633 Pput_2276 30 COG2384 COG2384, Predicted SAM-dependent methyltransferase General function prediction only 148548565 Nonpathogen - hypothetical protein Pput_3357 1 None None None 148550354 Common - helix-turn-helix- domain containing protein, AraC type Pput_5154 121 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148545284 Common - hypothetical protein Pput_0026 8 None None None 148545734 Common rpsL 30S ribosomal protein S12 Pput_0482 237 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 148546951 Common - hypothetical protein Pput_1713 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 148548782 Common - anti-sigma-factor antagonist Pput_3576 7 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 148545783 Common - hypothetical protein Pput_0531 11 None None None 148550046 Common - MltA domain protein Pput_4844 93 COG2821 MltA, Membrane-bound lytic murein transglycosylase Cell envelope biogenesis, outer membrane 148548589 Common - hypothetical protein Pput_3381 10 COG5556 COG5556, Uncharacterized conserved protein Function unknown 148549077 Common - hypothetical protein Pput_3871 1 None None None 148550112 Common - N-formimino-L-glutamate deiminase Pput_4910 96 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 148545338 Common trkA potassium transporter peripheral membrane component Pput_0081 141 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 148548359 Common - leucine-rich repeat protein Pput_3149 8 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 148548829 Common - hypothetical protein Pput_3623 1 None None None 148550371 Common - transcriptional regulator, LysR family Pput_5171 169 COG0583 LysR, Transcriptional regulator Transcription 148545932 Common - gluconate transporter Pput_0685 78 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 148547988 Common - trehalose synthase Pput_2774 9 None None None 148549894 Common - MaoC domain protein dehydratase Pput_4692 86 COG2030 MaoC, Acyl dehydratase Lipid metabolism 148546771 Common - flagellar motor protein MotD Pput_1532 159 COG1360 MotB, Flagellar motor protein Cell motility and secretion 148549330 Nonpathogen - hypothetical protein Pput_4124 1 None None None 148546496 Common - Tol-Pal system, YbgF Pput_1253 98 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 148548620 Common - hypothetical protein Pput_3412 1 None None None 148547220 Common - hypothetical protein Pput_1998 4 None None None 148545805 Common - phosphatidylglycerophosphatase A Pput_0555 105 COG1267 PgpA, Phosphatidylglycerophosphatase A and related proteins Lipid metabolism 148546376 Common - endonuclease III Pput_1133 238 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 148545889 Common - Paraquat-inducible protein A Pput_0639 56 COG2995 PqiA, Uncharacterized paraquat-inducible protein A Function unknown 148549650 Common - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Pput_4448 164 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 148545758 Common rplO 50S ribosomal protein L15 Pput_0506 213 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 148550321 Common - CDP-6-deoxy-delta-3,4-glucoseen reductase Pput_5121 102 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 148547997 Common - DNA-binding transcriptional regulator CsiR Pput_2783 122 COG1802 GntR, Transcriptional regulators Transcription 148546962 Common - DNA polymerase III subunit epsilon Pput_1724 185 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 148548789 Common - Uncharacterized copper-binding protein Pput_3583 27 COG4454 COG4454, Uncharacterized copper-binding protein Inorganic ion transport and metabolism 148549565 Common - type IV pilus assembly PilZ Pput_4360 2 None None None 148550225 Common - major facilitator superfamily MFS_1 Pput_5023 136 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148547490 Common cobN cobaltochelatase Pput_2269 89 COG1429 CobN, Cobalamin biosynthesis protein CobN and related Mg-chelatases Coenzyme metabolism 148545289 Nonpathogen - hypothetical protein Pput_0031 1 None None None 148546549 Common - hypothetical protein Pput_1307 2 None None None 148549547 Common - 4-carboxymuconolactone decarboxylase Pput_4342 90 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 148549387 Common - Phosphatidate cytidylyltransferase Pput_4181 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 148547068 Common - seryl-tRNA synthetase Pput_1833 243 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 148546642 Common - membrane protein-like protein Pput_1402 21 COG4323 COG4323, Predicted membrane protein Function unknown 148546592 Common - alpha/beta hydrolase fold Pput_1350 200 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148549709 Common mscL large-conductance mechanosensitive channel Pput_4507 143 COG1970 MscL, Large-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 148549366 Common - S-formylglutathione hydrolase Pput_4160 102 COG0627 COG0627, Predicted esterase General function prediction only 148549888 Common proA gamma-glutamyl phosphate reductase Pput_4686 189 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 148545678 Common - dihydroneopterin aldolase Pput_0426 52 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 148547703 Common - protein of unknown function DUF485 Pput_2486 37 COG3162 COG3162, Predicted membrane protein Function unknown 148546678 Common - succinylarginine dihydrolase Pput_1438 34 COG3724 AstB, Succinylarginine dihydrolase Amino acid transport and metabolism 148550022 Common - hypothetical protein Pput_4820 5 None None None 148547203 Common - glutathione-dependent formaldehyde-activating, GFA Pput_1980 49 COG3791 COG3791, Uncharacterized conserved protein Function unknown 148548352 Common - hypothetical protein Pput_3142 2 None None None 148545494 Common - Acyl-CoA dehydrogenase, type 2, C-terminal domain Pput_0238 119 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148549730 Common - cation diffusion facilitator family transporter Pput_4528 128 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 148547132 Common - diguanylate cyclase Pput_1902 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 148548233 Common - hypothetical protein Pput_3023 1 None None None 148550410 Common rpoZ DNA-directed RNA polymerase subunit omega Pput_5210 115 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 148548146 Common - glutathione-dependent formaldehyde-activating, GFA Pput_2936 36 COG3791 COG3791, Uncharacterized conserved protein Function unknown 148546561 Common - Aspartyl/Asparaginyl beta-hydroxylase Pput_1319 36 COG3555 COG3555, Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases Posttranslational modification, protein turnover, chaperones 148547451 Common - putative transcriptional regulator, GntR family Pput_2230 217 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 148549782 Common secG preprotein translocase subunit SecG Pput_4580 1 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 148546554 Common - hypothetical protein Pput_1312 100 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 148549739 Common - exodeoxyribonuclease V, beta subunit Pput_4537 210 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 148548030 Common - protein of unknown function DUF74 Pput_2816 66 COG0393 COG0393, Uncharacterized conserved protein Function unknown 148545510 Common - binding-protein-dependent transport systems inner membrane component Pput_0254 203 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 148550253 Common - dinucleoside polyphosphate hydrolase Pput_5053 115 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 148547390 Nonpathogen - hypothetical protein Pput_2169 2 COG1877 OtsB, Trehalose-6-phosphatase Carbohydrate transport and metabolism 148547410 Common - RND efflux system, outer membrane lipoprotein, NodT family Pput_2189 114 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148547536 Common - two component transcriptional regulator, winged helix family Pput_2315 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148550052 Common - 5,10-methylenetetrahydrofolate reductase Pput_4850 147 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 148549965 Common - hypothetical protein Pput_4763 13 None None None 148545691 Common - aminoglycoside phosphotransferase Pput_0439 90 COG3178 COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases General function prediction only 148548582 Common - hypothetical protein Pput_3374 4 None None None 148549291 Common - hypothetical protein Pput_4085 1 None None None 148550325 Common - Ppx/GppA phosphatase Pput_5125 179 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 148549785 Common - dihydropteroate synthase Pput_4583 217 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 148545952 Common - glutamate dehydrogenase Pput_0706 176 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 148546263 Common - permease YjgP/YjgQ family protein Pput_1020 113 COG0795 COG0795, Predicted permeases General function prediction only 148545487 Common - diguanylate cyclase with PAS/PAC sensor Pput_0231 189 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 148545483 Common - hypothetical protein Pput_0226 59 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 148548485 Common - periplasmic binding protein Pput_3277 79 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 148549246 Common cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase Pput_4040 118 COG2038 CobT, NaMN:DMB phosphoribosyltransferase Coenzyme metabolism 148546382 Common - putative cold-shock DNA-binding domain protein Pput_1139 174 COG1278 CspC, Cold shock proteins Transcription 148546296 Common - extracellular solute-binding protein, family 1 Pput_1053 69 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 148548668 Common - hypothetical protein Pput_3460 5 COG3728 XtmA, Phage terminase, small subunit DNA replication, recombination, and repair 148547361 Common - dihydrodipicolinate synthase Pput_2140 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 148546598 Common - Cupin 2, conserved barrel domain protein Pput_1358 14 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 148548859 Common - Conserved TM helix repeat-containing protein Pput_3653 8 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 148545725 Common - elongation factor Tu Pput_0473 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 148546159 Common - Rubredoxin-type Fe(Cys)4 protein Pput_0916 123 COG1773 COG1773, Rubredoxin Energy production and conversion 148548063 Common - NnrS family protein Pput_2849 57 COG3213 NnrS, Uncharacterized protein involved in response to NO Inorganic ion transport and metabolism 148546472 Common - K+ potassium transporter Pput_1229 88 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 148550423 Common - FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pput_5223 224 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 148549224 Common rdgC recombination associated protein Pput_4018 53 COG2974 RdgC, DNA recombination-dependent growth factor C DNA replication, recombination, and repair 148548568 Common - hypothetical protein Pput_3360 16 None None None 148548649 Common - para-aminobenzoate synthase, subunit I Pput_3441 222 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 148547290 Common - conserved hypothetical protein 698 Pput_2068 111 COG2855 COG2855, Predicted membrane protein Function unknown 148549539 Common - PEP phosphonomutase and related enzymes-like protein Pput_4334 112 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 148545720 Common - peptidase M23B Pput_0468 185 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 148549059 Common - transcriptional regulator, LysR family Pput_3853 135 COG0583 LysR, Transcriptional regulator Transcription 148550356 Common - potassium efflux system protein Pput_5156 158 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 148546003 Common ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Pput_0757 185 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 148548222 Common - MscS Mechanosensitive ion channel Pput_3012 135 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 148545719 Common anmK anhydro-N-acetylmuramic acid kinase Pput_0467 120 COG2377 COG2377, Predicted molecular chaperone distantly related to HSP70-fold metalloproteases Posttranslational modification, protein turnover, chaperones 148546401 Common - OmpA/MotB domain protein Pput_1158 164 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 148545331 Common - phospholipid/glycerol acyltransferase Pput_0074 182 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 148550378 Common - transcriptional regulator, XRE family Pput_5178 124 COG1396 HipB, Predicted transcriptional regulators Transcription 148547885 Common - hypothetical protein Pput_2669 18 None None None 148549345 Common - hypothetical protein Pput_4139 16 None None None 148548540 Common - Spore coat U domain protein Pput_3332 20 COG5430 COG5430, Uncharacterized secreted protein Function unknown 148546395 Common - Pyridoxal-5'-phosphate-dependent enzyme, beta subunit Pput_1152 217 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 148546259 Common - hypothetical protein Pput_1016 1 None None None 148547414 Common - phosphoglucomutase Pput_2193 232 COG0033 Pgm, Phosphoglucomutase Carbohydrate transport and metabolism 148550063 Common - CheW domain protein Pput_4861 8 None None None 148548171 Nonpathogen - hypothetical protein Pput_2961 1 None None None 148546209 Common - Auxin Efflux Carrier Pput_0966 141 COG0679 COG0679, Predicted permeases General function prediction only 148545762 Common - 30S ribosomal protein S11 Pput_0510 247 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 148548317 Common - hypothetical protein Pput_3107 9 COG4335 COG4335, DNA alkylation repair enzyme DNA replication, recombination, and repair 148548123 Common - hypothetical protein Pput_2912 14 None None None 148549287 Common - diacylglycerol kinase Pput_4081 97 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 148548057 Common ureE urease accessory protein UreE Pput_2843 60 COG2371 UreE, Urease accessory protein UreE Posttranslational modification, protein turnover, chaperones 148548474 Common - Lysine exporter protein (LYSE/YGGA) Pput_3266 54 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148548002 Common - peptidyl-prolyl cis-trans isomerase, cyclophilin type Pput_2788 201 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 148546331 Common - type II secretion system protein E Pput_1088 160 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 148546073 Common - ABC transporter related Pput_0828 248 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 148547701 Common - phenylacetate-CoA oxygenase, PaaJ subunit Pput_2484 42 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 148545305 Common - Ribonuclease III Pput_0048 182 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 148548254 Common - hypothetical protein Pput_3044 15 None None None 148546973 Common - NADH dehydrogenase subunit M Pput_1735 210 COG1008 NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) Energy production and conversion 148546564 Common - hypothetical protein Pput_1322 2 None None None 148547976 Common - Pyridoxal-5'-phosphate-dependent enzyme, beta subunit Pput_2762 179 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 148547863 Common - binding-protein-dependent transport systems inner membrane component Pput_2647 219 COG4174 COG4174, ABC-type uncharacterized transport system, permease component General function prediction only 148548151 Nonpathogen - hypothetical protein Pput_2941 1 None None None 148550336 Common - diaminopimelate decarboxylase Pput_5136 218 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 148549308 Common - Domain of unknown function DUF1833 Pput_4102 6 None None None 148549443 Common - spermidine/putrescine ABC transporter ATPase subunit Pput_4237 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 148546212 Common - rare lipoprotein A Pput_0969 136 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 148549052 Common - Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B Pput_3846 86 COG3384 COG3384, Uncharacterized conserved protein Function unknown 148548403 Common - metal dependent phosphohydrolase Pput_3195 64 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 148548604 Nonpathogen - hypothetical protein Pput_3396 1 None None None 148550024 Common - peptidase U62, modulator of DNA gyrase Pput_4822 166 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 148550099 Common - polar amino acid ABC transporter, inner membrane subunit Pput_4897 177 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 148545481 Common - hypothetical protein Pput_0224 1 None None None 148547029 Common - hypothetical protein Pput_1794 1 None None None 148548013 Common - GCN5-related N-acetyltransferase Pput_2799 9 COG0456 RimI, Acetyltransferases General function prediction only 148548662 Common greB transcription elongation factor GreB Pput_3454 200 COG0782 GreA, Transcription elongation factor Transcription 148549551 Common - beta-ketoadipyl CoA thiolase Pput_4346 173 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 148549455 Common - response regulator receiver protein Pput_4249 1 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148550463 Common - sodium/hydrogen exchanger Pput_5263 208 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 148549133 Common - hypothetical protein Pput_3927 2 None None None 148548591 Common - hypothetical protein Pput_3383 1 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 148549415 Common - protein of unknown function DUF548 Pput_4209 50 None None None 148547717 Common - hypothetical protein Pput_2500 1 None None None 148548818 Common - putative CheW protein Pput_3612 160 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 148548881 Common - secretion protein HlyD family protein Pput_3675 117 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 148546835 Nonpathogen - hypothetical protein Pput_1597 1 None None None 148545681 Common - hypothetical protein Pput_0429 71 COG2719 SpoVR, Uncharacterized conserved protein Function unknown 148548375 Common - hypothetical protein Pput_3165 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 148546319 Common - CMP/dCMP deaminase, zinc-binding Pput_1076 207 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 148547615 Common - putative GAF sensor protein Pput_2394 56 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 148545708 Common - Lipoate-protein ligase A-like protein Pput_0456 17 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 148546663 Common phhB pterin-4-alpha-carbinolamine dehydratase Pput_1423 85 COG2154 COG2154, Pterin-4a-carbinolamine dehydratase Coenzyme metabolism 148549099 Common - hypothetical protein Pput_3893 1 None None None 148549530 Common - Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family-like protein Pput_4325 84 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 148546640 Common - helix-turn-helix- domain containing protein, AraC type Pput_1400 129 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148546166 Common - extracellular solute-binding protein, family 5 Pput_0923 206 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 148546924 Nonpathogen - hypothetical protein Pput_1686 1 None None None 148549244 Common cobS cobalamin synthase Pput_4038 13 COG0368 CobS, Cobalamin-5-phosphate synthase Coenzyme metabolism 148545378 Common - cytochrome C oxidase assembly protein Pput_0121 68 COG3175 COX11, Cytochrome oxidase assembly factor Posttranslational modification, protein turnover, chaperones 148545419 Common - peptidase M16 domain protein Pput_0162 164 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 148547865 Common - sigma54 specific transcriptional regulator, Fis family Pput_2649 169 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 148550082 Common - transcriptional regulator, TetR family Pput_4880 55 COG1309 AcrR, Transcriptional regulator Transcription 148545791 Common - protein of unknown function DUF214 Pput_0541 29 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 148546702 Common - Protein-glutamate O-methyltransferase Pput_1462 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 148547291 Common - transcriptional regulator, LysR family Pput_2069 192 COG0583 LysR, Transcriptional regulator Transcription 148546416 Common livM leucine/isoleucine/valine transporter permease subunit Pput_1173 147 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 148550363 Common - alpha/beta hydrolase fold Pput_5163 177 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148546508 Common - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Pput_1265 218 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 148548766 Common - glutamine synthetase, catalytic region Pput_3559 224 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 148549576 Common - MscS Mechanosensitive ion channel Pput_4371 198 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 148547508 Common - response regulator receiver protein Pput_2287 207 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148550244 Nonpathogen - hypothetical protein Pput_5044 1 None None None 148545559 Common - protein of unknown function DUF344 Pput_0304 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 148547754 Common - transcriptional regulator, LysR family Pput_2537 189 COG0583 LysR, Transcriptional regulator Transcription 148547304 Common - Carboxymuconolactone decarboxylase Pput_2082 87 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 148547175 Common - glutathione reductase Pput_1950 245 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 148545655 Common - peptidase S9, prolyl oligopeptidase active site domain protein Pput_0400 111 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 148546769 Common - chemotaxis-specific methylesterase Pput_1530 213 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 148549696 Common - protein of unknown function DUF1244 Pput_4494 38 COG3492 COG3492, Uncharacterized protein conserved in bacteria Function unknown 148546250 Common - hypothetical protein Pput_1007 15 COG1524 COG1524, Uncharacterized proteins of the AP superfamily General function prediction only 148548148 Common - hypothetical protein Pput_2938 1 None None None 148546605 Common - amidohydrolase 2 Pput_1365 42 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 148546794 Common - hypothetical protein Pput_1555 8 None None None 148546630 Common - methyl-accepting chemotaxis sensory transducer Pput_1390 158 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148550054 Common - extracellular solute-binding protein, family 3 Pput_4852 45 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148548908 Common - major facilitator superfamily MFS_1 Pput_3702 145 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148548196 Common - inner-membrane translocator Pput_2986 144 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 148548583 Common - hypothetical protein Pput_3375 2 None None None 148550102 Common mdoG glucan biosynthesis protein G Pput_4900 50 COG3131 MdoG, Periplasmic glucans biosynthesis protein Inorganic ion transport and metabolism 148546239 Common - KpsF/GutQ family protein Pput_0996 180 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 148547102 Common - 3-oxoacid CoA-transferase, A subunit Pput_1871 102 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 148548720 Common - putative monovalent cation/H+ antiporter subunit D Pput_3512 179 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 148546878 Common - diaminobutyrate--2-oxoglutarate aminotransferase Pput_1640 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 148550187 Common - peptidase M16 domain protein Pput_4985 195 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 148549857 Common - AMP nucleosidase Pput_4655 55 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 148550400 Common - exodeoxyribonuclease III Xth Pput_5200 187 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 148549999 Common - putative hydroxymethylpyrimidine transporter CytX Pput_4797 31 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 148546283 Common - arginine/ornithine antiporter Pput_1040 90 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 148546363 Common - ornithine carbamoyltransferase Pput_1120 240 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 148546338 Common - hypothetical protein Pput_1095 1 None None None 148546614 Common - transposase, mutator type Pput_1374 88 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 148546756 Common - aminotransferase, class V Pput_1517 239 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 148546333 Common - general secretion pathway protein G Pput_1090 97 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 148545912 Common - DNA uptake lipoprotein-like protein Pput_0662 122 COG4105 ComL, DNA uptake lipoprotein General function prediction only 148548099 Common - Enoyl-CoA hydratase/isomerase Pput_2887 169 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 148548457 Common - hypothetical protein Pput_3249 1 None None None 148547127 Common - major facilitator superfamily MFS_1 Pput_1897 118 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148549261 Common - hypothetical protein Pput_4055 18 None None None 148550473 Common - Cyclopropane-fatty-acyl-phospholipid synthase Pput_5273 146 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 148546397 Common - Water Stress and Hypersensitive response protein Pput_1154 4 COG5608 COG5608, Conserved secreted protein Function unknown 148548919 Common - von Willebrand factor, type A Pput_3713 81 COG1240 ChlD, Mg-chelatase subunit ChlD Coenzyme metabolism 148550404 Common gmk guanylate kinase Pput_5204 213 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 148547813 Common - aldo/keto reductase Pput_2596 199 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 148547373 Common - major facilitator superfamily MFS_1 Pput_2152 185 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148545689 Common - SurA N-terminal domain Pput_0437 167 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 148546799 Common - protein of unknown function DUF6, transmembrane Pput_1560 63 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 148549844 Common - hypothetical protein Pput_4642 33 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 148549609 Common - Cytochrome c1-like protein Pput_4405 43 COG2857 CYT1, Cytochrome c1 Energy production and conversion 148548738 Common - phosphonoacetaldehyde hydrolase Pput_3530 37 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 148548903 Common - hypothetical protein Pput_3697 1 None None None 148550135 Common - hypothetical protein Pput_4933 1 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 148546195 Common - Uncharacterized iron-regulated protein Pput_0952 36 COG3487 IrpA, Uncharacterized iron-regulated protein Inorganic ion transport and metabolism 148547366 Common - AmiS/UreI transporter Pput_2145 16 None None None 148547170 Common - Domain of unknown function DUF1883 Pput_1945 4 COG5161 SFT1, Pre-mRNA cleavage and polyadenylation specificity factor RNA processing and modification 148546633 Common - protein of unknown function DUF454 Pput_1393 40 COG2832 COG2832, Uncharacterized protein conserved in bacteria Function unknown 148546681 Common alaS alanyl-tRNA synthetase Pput_1441 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 148549268 Common - (p)ppGpp synthetase I, SpoT/RelA Pput_4062 205 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 148547435 Common - transcriptional regulator, LysR family Pput_2214 185 COG0583 LysR, Transcriptional regulator Transcription 148549439 Common - putative CheW protein Pput_4233 67 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 148548784 Common - type IV pilus assembly PilZ Pput_3578 4 None None None 148550504 Common - Cobyrinic acid a,c-diamide synthase Pput_5304 229 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 148549745 Common ilvH acetolactate synthase 3 regulatory subunit Pput_4543 189 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 148548037 Common - azoreductase Pput_2823 98 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 148550352 Common - ATP-binding region, ATPase domain protein Pput_5152 225 COG3899 COG3899, Predicted ATPase General function prediction only 148546648 Common - two component transcriptional regulator, winged helix family Pput_1408 217 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148549655 Common - secretion protein HlyD family protein Pput_4453 151 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 148547818 Common - LexA repressor Pput_2601 172 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 148547897 Nonpathogen - hypothetical protein Pput_2681 1 None None None 148548834 Common - methyl-accepting chemotaxis sensory transducer Pput_3628 158 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148547022 Common - Endonuclease/exonuclease/phosphatase Pput_1787 59 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 148550316 Common - ABC-2 type transporter Pput_5116 160 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 148546140 Common - anti-FecI sigma factor, FecR Pput_0896 49 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 148548826 Common - protein of unknown function DUF903 Pput_3620 2 None None None 148547385 Common - phosphate ABC transporter, periplasmic phosphate-binding protein Pput_2164 137 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 148549321 Common - peptidase U35, phage prohead HK97 Pput_4115 24 COG3740 COG3740, Phage head maturation protease General function prediction only 148546844 Common - cytochrome oxidase maturation protein, cbb3-type Pput_1606 33 COG3197 FixS, Uncharacterized protein, possibly involved in nitrogen fixation Inorganic ion transport and metabolism 148549159 Common - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Pput_3953 186 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 148549428 Common - Hydrolase of the alpha/beta superfamily-like protein Pput_4222 58 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 148545844 Common - Pyruvate dehydrogenase (acetyl-transferring) Pput_0594 154 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 148549958 Common - hypothetical protein Pput_4756 9 None None None 148546688 Common - hypothetical protein Pput_1448 2 None None None 148549660 Common - protein of unknown function DUF1656 Pput_4458 9 None None None 148548280 Common - D-serine dehydratase Pput_3070 46 COG3048 DsdA, D-serine dehydratase Amino acid transport and metabolism 148549761 Common - hypothetical protein Pput_4559 4 None None None 148548687 Common - GAF modulated sigma54 specific transcriptional regulator, Fis family Pput_3479 181 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 148548110 Common - ring hydroxylating dioxygenase, alpha subunit Pput_2898 74 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 148547441 Common - acyl-CoA dehydrogenase domain protein Pput_2220 149 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148549838 Common - acyl-CoA thioesterase II Pput_4636 77 COG1946 TesB, Acyl-CoA thioesterase Lipid metabolism 148546221 Common - membrane protein-like protein Pput_0978 55 COG3164 COG3164, Predicted membrane protein Function unknown 148549946 Common - inner-membrane translocator Pput_4744 169 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 148549219 Common - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pput_4013 182 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 148546111 Common - hypothetical protein Pput_0867 17 COG3134 COG3134, Predicted outer membrane lipoprotein Function unknown 148549831 Common - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pput_4629 225 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 148547394 Common - two component transcriptional regulator, LuxR family Pput_2173 179 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148549421 Common - peptidase M22, glycoprotease Pput_4215 179 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 148547019 Common - trehalose synthase Pput_1784 172 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 148546434 Common - acetolactate synthase Pput_1191 222 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 148547697 Common - phenylacetate-CoA ligase Pput_2480 121 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 148548892 Common - transcriptional regulator, LysR family Pput_3686 192 COG0583 LysR, Transcriptional regulator Transcription 148549665 Common - protein of unknown function DUF6, transmembrane Pput_4463 57 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 148545636 Common - response regulator receiver protein Pput_0381 192 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148546182 Common - PAP2 (acid phosphatase) superfamily protein-like protein Pput_0939 27 COG3907 COG3907, PAP2 (acid phosphatase) superfamily protein General function prediction only 148545504 Common - taurine ABC transporter, periplasmic binding protein Pput_0248 88 COG4521 TauA, ABC-type taurine transport system, periplasmic component Inorganic ion transport and metabolism 148546934 Common - ABC-type uncharacterized transport system periplasmic component-like protein Pput_1696 14 COG2984 COG2984, ABC-type uncharacterized transport system, periplasmic component General function prediction only 148547677 Common - heat shock protein Hsp20 Pput_2460 142 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 148547568 Common - periplasmic binding protein/LacI transcriptional regulator Pput_2347 121 COG1609 PurR, Transcriptional regulators Transcription 148545835 Common - GAF modulated sigma54 specific transcriptional regulator, Fis family Pput_0585 177 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 148549825 Common - transcriptional regulator-like protein Pput_4623 36 COG2378 COG2378, Predicted transcriptional regulator Transcription 148547229 Common - transcriptional regulator, TetR family Pput_2007 36 COG1309 AcrR, Transcriptional regulator Transcription 148546357 Common glpD glycerol-3-phosphate dehydrogenase Pput_1114 147 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 148549464 Common rimM 16S rRNA-processing protein Pput_4258 187 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 148545365 Common - aminopeptidase-like protein Pput_0108 16 COG4324 COG4324, Predicted aminopeptidase General function prediction only 148546807 Common - Hydroxypyruvate reductase Pput_1569 86 COG2379 GckA, Putative glycerate kinase Carbohydrate transport and metabolism 148547012 Common - gamma-carboxygeranoyl-CoA hydratase Pput_1775 180 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 148546228 Common - Superoxide dismutase Pput_0985 204 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 148546157 Common - protein of unknown function DUF6, transmembrane Pput_0914 14 COG2510 COG2510, Predicted membrane protein Function unknown 148547143 Common - predicted inner membrane peptidase Pput_1913 185 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 148546230 Common - Phosphotransferase system, phosphocarrier protein HPr Pput_0987 145 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 148547008 Common - hypothetical protein Pput_1771 1 None None None 148547664 Common - amino acid permease-associated region Pput_2445 131 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 148547262 Common - hypothetical protein Pput_2040 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 148549190 Common - lipid A biosynthesis lauroyl acyltransferase Pput_3984 100 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 148549014 Common - pseudouridine synthase, RluA family Pput_3808 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 148547843 Common - ATPase AAA-2 domain protein Pput_2627 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 148547311 Common - permease for cytosine/purine, uracil, thiamine, allantoin Pput_2090 49 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 148550292 Common - N-acetylglutamate synthase Pput_5092 202 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 148545554 Common - polar amino acid ABC transporter, inner membrane subunit Pput_0299 174 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 148546002 Common - ribose-phosphate pyrophosphokinase Pput_0756 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 148547598 Common - Gluconate 2-dehydrogenase (acceptor) Pput_2377 74 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 148550061 Common - protein of unknown function DUF558 Pput_4859 201 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 148547199 Nonpathogen - hypothetical protein Pput_1974 1 None None None 148547184 Common - transcriptional regulator, LysR family Pput_1959 179 COG0583 LysR, Transcriptional regulator Transcription 148545540 Common - outer membrane porin Pput_0284 10 None None None 148549068 Common - major facilitator superfamily MFS_1 Pput_3862 69 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148545714 Common - short-chain dehydrogenase/reductase SDR Pput_0462 225 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 148549684 Common - regulatory protein, IclR Pput_4482 113 COG1414 IclR, Transcriptional regulator Transcription 148547561 Common - Lytic transglycosylase, catalytic Pput_2340 180 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 148547117 Common - Xanthine and CO dehydrogenase maturation factor XdhC/CoxF family-like protein Pput_1887 99 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 148547727 Common - hypothetical protein Pput_2510 9 None None None 148549960 Common rpsF 30S ribosomal protein S6 Pput_4758 195 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 148546986 Common - isocitrate lyase Pput_1748 128 COG2224 AceA, Isocitrate lyase Energy production and conversion 148546819 Common - hypothetical protein Pput_1581 43 COG3195 COG3195, Uncharacterized protein conserved in bacteria Function unknown 148545455 Common - protein of unknown function DUF1656 Pput_0198 11 None None None 148546859 Common - Exonuclease, RNase T and DNA polymerase III Pput_1621 17 COG5018 KapD, Inhibitor of the KinA pathway to sporulation, predicted exonuclease General function prediction only 148549156 Common - phosphoglycolate phosphatase Pput_3950 201 COG0546 Gph, Predicted phosphatases General function prediction only 148547591 Nonpathogen - hypothetical protein Pput_2370 2 None None None 148548032 Common - hypothetical protein Pput_2818 93 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 148550092 Common tatA twin argininte translocase protein A Pput_4890 29 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 148546055 Common - nicotinate-nucleotide pyrophosphorylase Pput_0810 205 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 148548877 Common - transcriptional regulator, AraC family Pput_3671 75 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148548101 Common - acetaldehyde dehydrogenase Pput_2889 37 COG4569 MhpF, Acetaldehyde dehydrogenase (acetylating) Secondary metabolites biosynthesis, transport, and catabolism 148548640 Common prpD 2-methylcitrate dehydratase Pput_3432 59 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 148549692 Common - hypothetical protein Pput_4490 2 None None None 148550218 Common - hypothetical protein Pput_5016 4 None None None 148547855 Common - hypothetical protein Pput_2639 6 None None None 148550332 Common - nucleoside diphosphate kinase regulator Pput_5132 70 COG0782 GreA, Transcription elongation factor Transcription 148546034 Common - protein of unknown function UPF0016 Pput_0788 69 COG2119 COG2119, Predicted membrane protein Function unknown 148547949 Common - putative transcriptional regulator, GntR family Pput_2733 213 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 148549147 Common ihfB integration host factor subunit beta Pput_3941 203 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 148548768 Common - transcriptional regulator, LysR family Pput_3561 171 COG0583 LysR, Transcriptional regulator Transcription 148546387 Common - Succinylglutamate desuccinylase/aspartoacylase Pput_1144 24 COG3608 COG3608, Predicted deacylase General function prediction only 148548200 Common - FMN reductase Pput_2990 58 COG0431 COG0431, Predicted flavoprotein General function prediction only 148546453 Common - ribonucleotide-diphosphate reductase subunit alpha Pput_1210 228 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 148548023 Common - short-chain dehydrogenase/reductase SDR Pput_2809 178 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 148546150 Common - helix-turn-helix- domain containing protein, AraC type Pput_0906 60 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148545547 Common - helix-turn-helix domain protein Pput_0291 10 COG5499 COG5499, Predicted transcription regulator containing HTH domain Transcription 148547342 Common - hypothetical protein Pput_2121 16 COG3521 COG3521, Uncharacterized protein conserved in bacteria Function unknown 148545854 Common - NUDIX hydrolase Pput_0604 24 COG1443 Idi, Isopentenyldiphosphate isomerase Lipid metabolism 148545962 Common - hypothetical protein Pput_0716 1 None None None 148546719 Common - CDP-glucose 4,6-dehydratase Pput_1480 228 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 148549541 Common - transcriptional regulator, TetR family Pput_4336 115 COG1309 AcrR, Transcriptional regulator Transcription 148546621 Common - hypothetical protein Pput_1381 25 COG3514 COG3514, Uncharacterized protein conserved in bacteria Function unknown 148545984 Common - DNA-3-methyladenine glycosylase II Pput_0738 112 COG0122 AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase DNA replication, recombination, and repair 148549626 Common - 2-alkenal reductase Pput_4424 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 148547236 Common - hypothetical protein Pput_2014 1 None None None 148547833 Common - Domain of unknown function DUF1795 Pput_2616 8 COG5435 COG5435, Uncharacterized conserved protein Function unknown 148547908 Common - L-carnitine dehydratase/bile acid-inducible protein F Pput_2692 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 148545989 Common - permease for cytosine/purine, uracil, thiamine, allantoin Pput_0743 29 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 148548945 Common - hypothetical protein Pput_3739 9 None None None 148545561 Common - A/G-specific adenine glycosylase Pput_0306 231 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 148548988 Common - transcriptional regulator, TetR family Pput_3782 47 COG1309 AcrR, Transcriptional regulator Transcription 148545811 Common - 1-deoxy-D-xylulose-5-phosphate synthase Pput_0561 226 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 148546467 Nonpathogen - hypothetical protein Pput_1224 1 None None None 148548199 Common - luciferase family protein Pput_2989 94 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 148549106 Nonpathogen - hypothetical protein Pput_3900 1 None None None 148547552 Common - ThiJ/PfpI domain protein Pput_2331 87 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 148547720 Common - LmbE family protein Pput_2503 18 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 148548289 Common - PAS/PAC sensor hybrid histidine kinase Pput_3079 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148547472 Nonpathogen - hypothetical protein Pput_2251 1 None None None 148548240 Common - hypothetical protein Pput_3030 2 None None None 148545596 Common - protein of unknown function DUF710 Pput_0341 4 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 148546654 Common - chromosome segregation and condensation protein ScpA Pput_1414 144 COG1354 COG1354, Uncharacterized conserved protein Function unknown 148547501 Common - Enoyl-CoA hydratase/isomerase Pput_2280 177 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 148549489 Common - two component heavy metal response transcriptional regulator, winged helix family Pput_4283 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148550070 Common - TonB family protein Pput_4868 35 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 148545372 Common - Carbonate dehydratase Pput_0115 154 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 148545695 Common - PAS/PAC sensor signal transduction histidine kinase Pput_0443 172 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 148546513 Common - phosphoribosylaminoimidazole-succinocarboxamide synthase Pput_1270 217 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 148545431 Common - NAD/NADP transhydrogenase alpha subunit-like protein Pput_0174 117 COG3288 PntA, NAD/NADP transhydrogenase alpha subunit Energy production and conversion 148547548 Common - RarD protein, DMT superfamily transporter Pput_2327 93 COG2962 RarD, Predicted permeases General function prediction only 148548772 Common - hypothetical protein Pput_3565 27 None None None 148548619 Common - siphovirus Gp157 family protein Pput_3411 13 None None None 148547613 Common - transcriptional regulator, LysR family Pput_2392 193 COG0583 LysR, Transcriptional regulator Transcription 148550299 Common - glycine dehydrogenase Pput_5099 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 148547950 Common - integral membrane sensor signal transduction histidine kinase Pput_2734 209 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148547845 Common - protein of unknown function DUF876 Pput_2629 48 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 148545538 Nonpathogen - hypothetical protein Pput_0282 1 None None None 148547685 Common - UspA domain protein Pput_2468 19 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 148548861 Common - Mg2+ transporter protein, CorA family protein Pput_3655 56 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 148545824 Common - copper-resistance protein, CopA family Pput_0574 122 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 148546991 Common - elongation factor G Pput_1753 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 148546344 Common - Glutamate synthase (NADPH) Pput_1101 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 148546932 Common - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase Pput_1694 81 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 148548532 Common - Sulfite reductase (ferredoxin) Pput_3324 149 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 148547340 Common - hypothetical protein Pput_2119 45 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 148547783 Common - Glutamate--putrescine ligase Pput_2566 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 148547533 Common mobA molybdopterin-guanine dinucleotide biosynthesis protein A Pput_2312 129 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 148549111 Common - polysaccharide export protein Pput_3905 74 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 148545847 Common - acetyl-CoA carboxylase biotin carboxylase subunit Pput_0597 233 COG0439 AccC, Biotin carboxylase Lipid metabolism 148548336 Common - metal dependent phosphohydrolase Pput_3126 113 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 148547055 Common - NUDIX hydrolase Pput_1820 52 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 148546009 Common - molybdopterin biosynthesis protein MoeB Pput_0763 223 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 148549092 Common - hypothetical protein Pput_3886 1 None None None 148547401 Common - transcriptional regulator, RpiR family Pput_2180 54 COG1737 RpiR, Transcriptional regulators Transcription 148547606 Common - surface antigen (D15) Pput_2385 160 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 148549614 Common - aldo/keto reductase Pput_4410 192 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 148547679 Common - putative transcriptional regulator, Crp/Fnr family Pput_2462 123 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 148547267 Common - extracellular solute-binding protein, family 1 Pput_2045 127 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 148550160 Common - Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) Pput_4958 202 COG0281 SfcA, Malic enzyme Energy production and conversion 148547318 Common - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein Pput_2097 103 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 148546852 Nonpathogen - hypothetical protein Pput_1614 1 None None None 148547670 Common - UspA domain protein Pput_2453 31 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 148545590 Common - hypothetical protein Pput_0335 8 None None None 148546066 Common - diguanylate cyclase Pput_0821 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 148548790 Common - two component heavy metal response transcriptional regulator, winged helix family Pput_3584 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148549827 Nonpathogen - hypothetical protein Pput_4625 1 None None None 148545977 Common - transcriptional regulator, LysR family Pput_0731 171 COG0583 LysR, Transcriptional regulator Transcription 148550278 Common - sulfate ABC transporter, periplasmic sulfate-binding protein Pput_5078 89 COG1613 Sbp, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 148548277 Common - transglutaminase, N-terminal domain protein Pput_3067 93 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 148548932 Common - hypothetical protein Pput_3726 20 None None None 148547672 Nonpathogen - hypothetical protein Pput_2455 1 None None None 148549340 Common - response regulator receiver protein Pput_4134 1 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148548396 Nonpathogen - hypothetical protein Pput_3188 1 None None None 148549711 Common - Autoinducer-binding domain protein Pput_4509 45 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 148546465 Common - RNA-binding S4 domain protein Pput_1222 136 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 148545425 Common - hypothetical protein Pput_0168 2 None None None 148549254 Common - NLP/P60 protein Pput_4048 141 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 148548385 Common - short-chain dehydrogenase/reductase SDR Pput_3177 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148550393 Common - extracellular solute-binding protein, family 5 Pput_5193 201 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 148548974 Common - Peptidoglycan-binding LysM Pput_3768 39 COG3170 FimV, Tfp pilus assembly protein FimV Cell motility and secretion / Intracellular trafficking and secretion 148545356 Common - transcriptional regulator, LysR family Pput_0099 157 COG0583 LysR, Transcriptional regulator Transcription 148547981 Common - malate:quinone oxidoreductase Pput_2767 57 COG0579 COG0579, Predicted dehydrogenase General function prediction only 148545404 Common - N-acetylmuramoyl-L-alanine amidase, family 2 Pput_0147 109 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 148546529 Common - amino acid permease-associated region Pput_1286 188 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 148549124 Nonpathogen - Phytanoyl-CoA dioxygenase Pput_3918 5 None None None 148545262 Common recF recombination protein F Pput_0003 166 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 148545324 Common - sigma54 specific transcriptional regulator, Fis family Pput_0067 176 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 148547573 Common - precorrin-4 C11-methyltransferase Pput_2352 202 COG2875 CobM, Precorrin-4 methylase Coenzyme metabolism 148545776 Common - formate dehydrogenase, beta subunit Pput_0524 160 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 148549604 Common - hypothetical protein Pput_4400 120 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 148545808 Common - hypothetical protein Pput_0558 1 None None None 148548270 Common - BCCT transporter Pput_3060 95 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 148550425 Common - Chorismate lyase Pput_5225 32 COG3161 UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) Coenzyme metabolism 148549461 Common - thioesterase superfamily protein Pput_4255 135 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 148548182 Common - short-chain dehydrogenase/reductase SDR Pput_2972 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148547479 Common - hypothetical protein Pput_2258 18 None None None 148550158 Common - Tfp pilus assembly protein ATPase PilM-like protein Pput_4956 47 COG4972 PilM, Tfp pilus assembly protein, ATPase PilM Cell motility and secretion / Intracellular trafficking and secretion 148548627 Nonpathogen - hypothetical protein Pput_3419 1 None None None 148550120 Common - GTP-binding protein TypA Pput_4918 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 148547006 Common - Protein-disulfide isomerase-like protein Pput_1768 17 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 148547004 Common uvrC excinuclease ABC subunit C Pput_1766 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 148547570 Common - Hpt sensor hybrid histidine kinase Pput_2349 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148549164 Common - hypothetical protein Pput_3958 12 COG3184 COG3184, Uncharacterized protein conserved in bacteria Function unknown 148549351 Nonpathogen - hypothetical protein Pput_4145 1 None None None 148550500 Common - F0F1 ATP synthase subunit C Pput_5300 65 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 148546122 Common - protein of unknown function DUF528 Pput_0878 43 COG2975 COG2975, Uncharacterized protein conserved in bacteria Function unknown 148549070 Common - TonB-dependent siderophore receptor Pput_3864 95 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148547809 Common - short chain fatty acid transporter Pput_2592 39 COG2031 AtoE, Short chain fatty acids transporter Lipid metabolism 148546443 Common - protein of unknown function DUF6, transmembrane Pput_1200 2 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 148546540 Common - ribonuclease D Pput_1297 119 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 148550197 Common - hypothetical protein Pput_4995 8 None None None 148547681 Common - Erythromycin esterase Pput_2464 33 COG2312 COG2312, Erythromycin esterase homolog General function prediction only 148549985 Common - Rhodanese domain protein Pput_4783 141 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 148549016 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase Pput_3810 199 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 148547110 Common - extracellular solute-binding protein, family 5 Pput_1880 190 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 148546378 Common - electron transport complex, RnfABCDGE type, D subunit Pput_1135 76 COG4658 RnfD, Predicted NADH:ubiquinone oxidoreductase, subunit RnfD Energy production and conversion 148546739 Common fliH flagellar assembly protein H Pput_1500 57 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 148548656 Common - hypothetical protein Pput_3448 1 None None None 148546889 Common - Electron transfer flavoprotein, alpha/beta-subunit-like protein Pput_1651 152 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 148545291 Nonpathogen - hypothetical protein Pput_0034 1 None None None 148549861 Common thiE thiamine-phosphate pyrophosphorylase Pput_4659 193 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 148550190 Common - peptidase M16 domain protein Pput_4988 196 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 148546269 Common - glycine cleavage system protein H Pput_1026 186 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 148547847 Common - ImcF domain protein Pput_2631 47 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 148549236 Common - membrane protein involved in aromatic hydrocarbon degradation Pput_4030 88 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 148549589 Common - Polypeptide-transport-associated domain protein, FtsQ-type Pput_4384 74 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 148550036 Common - hypothetical protein Pput_4834 1 COG3895 COG3895, Predicted periplasmic protein General function prediction only 148549996 Common - protein of unknown function DUF1249 Pput_4794 26 COG3151 COG3151, Uncharacterized protein conserved in bacteria Function unknown 148549139 Common - glucose-1-phosphate thymidylyltransferase Pput_3933 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 148547933 Common - Mg2+ transporter protein, CorA family protein Pput_2717 32 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 148545406 Common - multi-sensor signal transduction histidine kinase Pput_0149 220 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 148545461 Common - hypothetical protein Pput_0204 4 None None None 148546125 Common - type IV pilus biogenesis/stability protein PilW Pput_0881 71 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 148545638 Common - amino acid-binding ACT domain protein Pput_0383 24 COG2716 GcvR, Glycine cleavage system regulatory protein Amino acid transport and metabolism 148547438 Common - methyl-accepting chemotaxis sensory transducer Pput_2217 126 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148548506 Common - Uncharacterized low-complexity protein Pput_3298 2 COG3767 COG3767, Uncharacterized low-complexity protein Function unknown 148545459 Common - cytochrome c, class I Pput_0202 63 COG0672 FTR1, High-affinity Fe2+/Pb2+ permease Inorganic ion transport and metabolism 148545392 Common - ABC transporter related Pput_0135 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 148548362 Common - amino acid adenylation domain Pput_3152 218 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 148549264 Nonpathogen - hypothetical protein Pput_4058 6 None None None 148548153 Common - hypothetical protein Pput_2943 13 None None None 148545950 Common - hypothetical protein Pput_0704 1 None None None 148550077 Common hslU ATP-dependent protease ATP-binding subunit Pput_4875 213 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 148547764 Common - outer membrane porin Pput_2547 11 None None None 148547330 Common - extracellular solute-binding protein, family 3 Pput_2109 43 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148545787 Common - transcriptional regulator, HxlR family Pput_0537 128 COG1733 COG1733, Predicted transcriptional regulators Transcription 148546891 Common - ABC-type amino acid transport/signal transduction systems periplasmic component/domain-like protein Pput_1653 16 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148548189 Common - ABC transporter related Pput_2979 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 148545941 Common - transcriptional regulator, LysR family Pput_0695 169 COG0583 LysR, Transcriptional regulator Transcription 148550095 Common - protein of unknown function DUF558 Pput_4893 67 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 148549502 Common - hypothetical protein Pput_4296 1 None None None 148545500 Common - choline/carnitine/betaine transporter Pput_0244 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 148546247 Common hisG ATP phosphoribosyltransferase catalytic subunit Pput_1004 208 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 148546270 Common - DoxX family protein Pput_1027 22 COG2259 COG2259, Predicted membrane protein Function unknown 148545520 Common - protein of unknown function DUF785 Pput_0264 39 COG4067 COG4067, Uncharacterized protein conserved in archaea Posttranslational modification, protein turnover, chaperones 148548261 Common - transcriptional regulator, LysR family Pput_3051 186 COG0583 LysR, Transcriptional regulator Transcription 148546440 Common - pyridoxamine 5'-phosphate oxidase-related, FMN-binding Pput_1197 156 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 148546777 Common - cytoplasmic domain of flagellar protein FhlB-like protein Pput_1538 50 COG2257 COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB Function unknown 148547233 Common - alkylhydroperoxidase like protein, AhpD family Pput_2011 81 COG2128 COG2128, Uncharacterized conserved protein Function unknown 148548209 Common - outer membrane porin Pput_2999 9 None None None 148547280 Common - aldo/keto reductase Pput_2058 193 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 148546015 Common - Protein of unknown function DUF1722 Pput_0769 74 COG3272 COG3272, Uncharacterized conserved protein Function unknown 148547837 Common - hypothetical protein Pput_2621 2 None None None 148545260 Common dnaA chromosomal replication initiation protein Pput_0001 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 148546411 Common - Na+/H+ antiporter NhaA Pput_1168 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 148547339 Common - protein of unknown function DUF796 Pput_2118 29 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 148547546 Common - Lysine exporter protein (LYSE/YGGA) Pput_2325 37 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148548927 Common - 6-phosphogluconolactonase Pput_3721 63 COG2706 COG2706, 3-carboxymuconate cyclase Carbohydrate transport and metabolism 148550476 Common - Transketolase domain protein Pput_5276 220 COG3959 COG3959, Transketolase, N-terminal subunit Carbohydrate transport and metabolism 148546703 Common flgB flagellar basal body rod protein FlgB Pput_1464 85 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 148548481 Common - alkylhydroperoxidase like protein, AhpD family Pput_3273 79 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 148548041 Common - undecaprenyl pyrophosphate phosphatase Pput_2827 196 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 148549580 Common - ATP--cobalamin adenosyltransferase Pput_4375 128 COG2096 COG2096, Uncharacterized conserved protein Function unknown 148547167 Common - molybdenum ABC transporter, periplasmic molybdate-binding protein Pput_1942 134 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 148548692 Common - GntR domain protein Pput_3484 138 COG2186 FadR, Transcriptional regulators Transcription 148548413 Common - protein of unknown function DUF453 Pput_3205 56 COG2828 COG2828, Uncharacterized protein conserved in bacteria Function unknown 148549027 Common - Glutathione S-transferase, N-terminal domain Pput_3821 88 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148548244 Common - regulatory protein, ArsR Pput_3034 133 COG0640 ArsR, Predicted transcriptional regulators Transcription 148546104 Common - FAD dependent oxidoreductase Pput_0860 102 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148547660 Common - Integral membrane protein TerC Pput_2440 92 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 148548885 Common - efflux transporter, RND family, MFP subunit Pput_3679 173 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148545905 Common - ABC transporter related Pput_0655 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 148547925 Nonpathogen - hypothetical protein Pput_2709 1 None None None 148548168 Nonpathogen - hypothetical protein Pput_2958 1 None None None 148545993 Common - potassium efflux system protein Pput_0747 200 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 148548207 Nonpathogen - hypothetical protein Pput_2997 1 None None None 148545533 Common - thioesterase domain, putative Pput_0277 35 None None None 148549868 Common lnt apolipoprotein N-acyltransferase Pput_4666 165 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 148546278 Common - hypothetical protein Pput_1035 1 None None None 148546314 Common - inositol-5-monophosphate dehydrogenase Pput_1071 240 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 148546813 Common - protein of unknown function DUF808 Pput_1575 61 COG2354 COG2354, Uncharacterized protein conserved in bacteria Function unknown 148545276 Common - two component heavy metal response transcriptional regulator, winged helix family Pput_0017 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148547134 Nonpathogen - 17 kDa surface antigen Pput_1904 1 None None None 148547893 Common - Alcohol dehydrogenase, zinc-binding domain protein Pput_2677 182 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 148547465 Common - Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein Pput_2244 70 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 148548054 Common - urease accessory protein UreG Pput_2840 156 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 148548995 Common - protein of unknown function DUF1285 Pput_3789 45 COG3816 COG3816, Uncharacterized protein conserved in bacteria Function unknown 148547269 Common - response regulator receiver protein Pput_2047 54 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148549732 Common - 3-hydroxyisobutyrate dehydrogenase Pput_4530 169 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 148546856 Common - cytochrome c oxidase, cbb3-type, subunit I Pput_1618 148 COG3278 CcoN, Cbb3-type cytochrome oxidase, subunit 1 Posttranslational modification, protein turnover, chaperones 148549773 Common - Antibiotic biosynthesis monooxygenase Pput_4571 32 COG1359 COG1359, Uncharacterized conserved protein Function unknown 148549023 Common - DNA internalization-related competence protein ComEC/Rec2 Pput_3817 118 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 148548914 Common - major facilitator superfamily MFS_1 Pput_3708 17 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148548676 Common clpX ATP-dependent protease ATP-binding subunit Pput_3468 228 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 148546867 Common - Protein-disulfide reductase Pput_1629 77 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 148545842 Common - branched-chain alpha-keto acid dehydrogenase subunit E2 Pput_0592 193 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148546099 Common - Addiction module killer protein, HI1419 Pput_0855 42 COG3657 COG3657, Uncharacterized protein conserved in bacteria Function unknown 148545676 Common - putative metalloendopeptidase, glycoprotease family Pput_0424 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 148545902 Common - FAD dependent oxidoreductase Pput_0652 153 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148548078 Common - phage integrase family protein Pput_2864 110 COG0582 XerC, Integrase DNA replication, recombination, and repair 148545286 Common - 40-residue YVTN family beta-propeller repeat protein Pput_0028 90 COG3391 COG3391, Uncharacterized conserved protein Function unknown 148549343 Nonpathogen - hypothetical protein Pput_4137 1 None None None 148547640 Common - protein of unknown function DUF198 Pput_2420 46 COG1469 COG1469, Uncharacterized conserved protein Function unknown 148549316 Common - phage head-tail adaptor, putative Pput_4110 8 COG5614 COG5614, Bacteriophage head-tail adaptor General function prediction only 148549371 Common eno phosphopyruvate hydratase Pput_4165 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 148549046 Common - histidine kinase Pput_3840 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148545884 Common - transcriptional regulator, TetR family Pput_0634 86 COG1309 AcrR, Transcriptional regulator Transcription 148546107 Common tgt queuine tRNA-ribosyltransferase Pput_0863 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 148548226 Common - short-chain dehydrogenase/reductase SDR Pput_3016 236 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 148548486 Common - transport system permease protein Pput_3278 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 148547577 Common - GCN5-related N-acetyltransferase Pput_2356 95 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 148545527 Common - oxidoreductase alpha (molybdopterin) subunit Pput_0271 173 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 148549210 Common - protein of unknown function DUF1232 Pput_4004 24 COG3339 COG3339, Uncharacterized conserved protein Function unknown 148549243 Common - glycoside hydrolase, family 5 Pput_4037 7 None None None 148548863 Common - hypothetical protein Pput_3657 14 COG2267 PldB, Lysophospholipase Lipid metabolism 148549176 Nonpathogen - hypothetical protein Pput_3970 1 None None None 148549389 Common frr ribosome recycling factor Pput_4183 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 148545344 Common - hypothetical protein Pput_0087 1 None None None 148547626 Common - protein of unknown function DUF323 Pput_2405 95 COG1262 COG1262, Uncharacterized conserved protein Function unknown 148549529 Common - hypothetical protein Pput_4324 1 None None None 148548576 Common - hypothetical protein Pput_3368 9 None None None 148549598 Common - Peptidoglycan glycosyltransferase Pput_4393 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 148549755 Common - periplasmic binding protein Pput_4553 139 COG4558 ChuT, ABC-type hemin transport system, periplasmic component Inorganic ion transport and metabolism 148547324 Common - outer membrane porin Pput_2103 8 None None None 148549567 Common - pyruvate kinase Pput_4362 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 148545897 Common ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Pput_0647 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 148549160 Common - ABC transporter related Pput_3954 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 148550044 Common - protein of unknown function DUF1090 Pput_4842 18 None None None 148547633 Common - TonB-dependent siderophore receptor Pput_2412 116 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148546915 Common - amino acid adenylation domain Pput_1677 221 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 148545617 Common - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Pput_0362 184 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148545759 Common secY preprotein translocase subunit SecY Pput_0507 234 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 148548727 Common - transcriptional regulator, TraR/DksA family Pput_3519 136 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 148545313 Common - hypothetical protein Pput_0056 1 None None None 148548791 Common - heavy metal sensor signal transduction histidine kinase Pput_3585 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148549335 Common - IstB domain protein ATP-binding protein Pput_4129 60 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 148547587 Common - hypothetical protein Pput_2366 38 None None None 148550129 Common - glutaredoxin 3 Pput_4927 127 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 148548179 Common - putative sigma E regulatory protein, MucB/RseB Pput_2969 27 COG3026 RseB, Negative regulator of sigma E activity Signal transduction mechanisms 148545362 Common - protein of unknown function DUF1161 Pput_0105 3 None None None 148547289 Common - conserved hypothetical protein 730 Pput_2067 43 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 148545439 Common - transcriptional regulator, GntR family Pput_0182 123 COG1802 GntR, Transcriptional regulators Transcription 148548879 Common - helix-turn-helix- domain containing protein, AraC type Pput_3673 87 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148549473 Common - transferase hexapeptide repeat containing protein Pput_4267 206 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 148547652 Nonpathogen - hypothetical protein Pput_2432 1 None None None 148549640 Common - hypothetical protein Pput_4438 5 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 148550459 Common - glucose-6-phosphate 1-dehydrogenase Pput_5259 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 148547460 Common - transcriptional regulator, LysR family Pput_2239 172 COG0583 LysR, Transcriptional regulator Transcription 148550020 Common - sodium/proline symporter Pput_4818 182 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 148547112 Common - ABC transporter related Pput_1882 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 148547986 Common - hypothetical protein Pput_2772 100 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 148548436 Common - hypothetical protein Pput_3228 10 None None None 148546590 Common - ABC transporter related Pput_1348 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 148547222 Common - precorrin 6A synthase Pput_2000 46 COG2243 CobF, Precorrin-2 methylase Coenzyme metabolism 148546040 Common - regulatory protein, LuxR Pput_0794 106 COG2909 MalT, ATP-dependent transcriptional regulator Transcription 148550482 Common - dihydrodipicolinate synthetase Pput_5282 224 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 148547741 Common - YheO domain protein Pput_2524 45 COG2964 COG2964, Uncharacterized protein conserved in bacteria Function unknown 148547995 Common - hypothetical protein Pput_2781 126 COG0579 COG0579, Predicted dehydrogenase General function prediction only 148546723 Common - thiamine pyrophosphate enzyme TPP binding domain protein Pput_1484 222 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 148545771 Common - putative transcriptional regulator, GntR family Pput_0519 175 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 148546092 Common - protein of unknown function DUF1311 Pput_0848 31 COG3755 COG3755, Uncharacterized protein conserved in bacteria Function unknown 148546547 Common - hypothetical protein Pput_1305 27 None None None 148545765 Common rplQ 50S ribosomal protein L17 Pput_0513 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 148547778 Common - hypothetical protein Pput_2561 8 None None None 148545670 Common - Integrase, catalytic region Pput_0415 147 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 148548302 Common - integral membrane sensor signal transduction histidine kinase Pput_3092 147 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 148545309 Nonpathogen - hypothetical protein Pput_0052 1 None None None 148547867 Common - 3-hydroxybutyrate dehydrogenase Pput_2651 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148545585 Common - hypothetical protein Pput_0330 10 None None None 148549791 Common carB carbamoyl phosphate synthase large subunit Pput_4589 236 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 148550014 Common - hypothetical protein Pput_4812 3 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 148548587 Common - hypothetical protein Pput_3379 8 None None None 148546960 Common - hypothetical protein Pput_1722 56 None None None 148548117 Common - short-chain dehydrogenase/reductase SDR Pput_2905 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148546494 Common tolB translocation protein TolB Pput_1251 157 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 148545915 Common - ATPase AAA-2 domain protein Pput_0665 216 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 148550345 Common - hypothetical protein Pput_5145 7 None None None 148548006 Common - hypothetical protein Pput_2792 1 None None None 148549432 Common lysS lysyl-tRNA synthetase Pput_4226 247 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 148548313 Common - hypothetical protein Pput_3103 3 None None None 148547315 Common - alkylhydroperoxidase like protein, AhpD family Pput_2094 65 COG2128 COG2128, Uncharacterized conserved protein Function unknown 148548706 Common - ABC transporter domain protein Pput_3498 249 COG4178 COG4178, ABC-type uncharacterized transport system, permease and ATPase components General function prediction only 148548514 Common - Protein of unknown function, YqcI/YcgG Pput_3306 11 COG3403 COG3403, Uncharacterized conserved protein Function unknown 148546524 Common - NADH:flavin oxidoreductase/NADH oxidase Pput_1281 177 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 148546261 Common - leucyl aminopeptidase Pput_1018 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 148547487 Common - hypothetical protein Pput_2266 8 None None None 148545449 Common - ABC transporter related Pput_0192 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 148547412 Common - protein of unknown function DUF1652 Pput_2191 1 None None None 148545516 Common - RNA binding S1 domain protein Pput_0260 184 COG2183 Tex, Transcriptional accessory protein Transcription 148547218 Common - hypothetical protein Pput_1996 1 None None None 148545939 Common - cystathionine gamma-synthase Pput_0693 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 148546697 Common - type IV pilus assembly PilZ Pput_1457 2 COG5581 COG5581, Predicted glycosyltransferase Cell envelope biogenesis, outer membrane 148548447 Common - cyanate lyase Pput_3239 41 COG1513 CynS, Cyanate lyase Inorganic ion transport and metabolism 148545642 Common - amidophosphoribosyltransferase-like protein Pput_0387 89 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 148547353 Common - hypothetical protein Pput_2132 16 None None None 148548731 Common - acetyl-CoA acetyltransferase Pput_3523 170 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 148549278 Common - arsenate reductase Pput_4072 107 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 148548065 Common - VRR-NUC domain protein Pput_2851 12 None None None 148549780 Common nusA transcription elongation factor NusA Pput_4578 216 COG0195 NusA, Transcription elongation factor Transcription 148545698 Common - extracellular solute-binding protein, family 1 Pput_0446 88 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 148547066 Common - recombination factor protein RarA Pput_1831 240 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 148546014 Common - putative transcriptional regulator, MerR family Pput_0768 58 COG0789 SoxR, Predicted transcriptional regulators Transcription 148546710 Common flgH flagellar basal body L-ring protein Pput_1471 100 COG2063 FlgH, Flagellar basal body L-ring protein Cell motility and secretion 148549358 Common - DNA mismatch repair protein Pput_4152 201 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 148547798 Common - GMC oxidoreductase Pput_2581 61 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 148548777 Common - Chorismate mutase Pput_3570 33 COG1605 PheA, Chorismate mutase Amino acid transport and metabolism 148546661 Common - hypothetical protein Pput_1421 1 None None None 148547205 Common - hypothetical protein Pput_1983 19 COG1359 COG1359, Uncharacterized conserved protein Function unknown 161936356 Common - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase Pput_3431 209 COG1049 AcnB, Aconitase B Energy production and conversion 148547539 Common - threonine dehydratase Pput_2318 216 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 148548134 Common - DNA topoisomerase III Pput_2923 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 148549368 Common - transcriptional regulator, LysR family Pput_4162 173 COG0583 LysR, Transcriptional regulator Transcription 148549929 Common - Molecular chaperone-like protein Pput_4727 232 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 148549933 Common - protein of unknown function DUF6, transmembrane Pput_4731 116 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 148545727 Common nusG transcription antitermination protein NusG Pput_0475 215 COG0250 NusG, Transcription antiterminator Transcription 148549783 Common tpiA triosephosphate isomerase Pput_4581 228 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 148548466 Common - acyl-CoA dehydrogenase domain protein Pput_3258 154 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148546745 Common - flagellar hook-length control protein Pput_1506 35 COG3144 FliK, Flagellar hook-length control protein Cell motility and secretion 148546320 Common - Lytic transglycosylase, catalytic Pput_1077 131 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 148548666 Common - TatD-related deoxyribonuclease Pput_3458 226 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 148545266 Common - AAA ATPase Pput_0007 33 COG2842 COG2842, Uncharacterized ATPase, putative transposase General function prediction only 148546380 Common metG methionyl-tRNA synthetase Pput_1137 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 148548307 Common - peptidase C26 Pput_3097 119 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 148549203 Common - ABC transporter related Pput_3997 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 148549545 Common - outer membrane porin Pput_4340 10 None None None 148548699 Common - Endoribonuclease L-PSP Pput_3491 180 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 148549676 Common - hypothetical protein Pput_4474 1 None None None 148547248 Common - ferredoxin Pput_2026 106 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 148548843 Common - deoxyguanosinetriphosphate triphosphohydrolase-like protein Pput_3637 159 COG0232 Dgt, dGTP triphosphohydrolase Nucleotide transport and metabolism 148545756 Common rpsE 30S ribosomal protein S5 Pput_0504 245 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 148545740 Common rplD 50S ribosomal protein L4 Pput_0488 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 148546474 Common - protein of unknown function DUF470 Pput_1231 69 COG2898 COG2898, Uncharacterized conserved protein Function unknown 148548986 Common - thioesterase superfamily protein Pput_3780 34 COG0824 FcbC, Predicted thioesterase General function prediction only 148550406 Common - amino acid permease-associated region Pput_5206 52 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 148545722 Common - biotin--protein ligase Pput_0470 222 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 148547496 Common - Endoribonuclease L-PSP Pput_2275 153 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 148548296 Common - hypothetical protein Pput_3086 18 COG5501 COG5501, Predicted secreted protein Function unknown 148549967 Common - adenylosuccinate synthetase Pput_4765 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 148545442 Common - type I secretion membrane fusion protein, HlyD family Pput_0185 129 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 148546765 Common fliA flagellar biosynthesis sigma factor Pput_1526 214 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 148545509 Common - alkanesulfonate monooxygenase Pput_0253 84 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 148547765 Common - benzoate transporter Pput_2548 59 COG3135 BenE, Uncharacterized protein involved in benzoate metabolism Secondary metabolites biosynthesis, transport, and catabolism 148547480 Common - helix-turn-helix- domain containing protein, AraC type Pput_2259 59 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148549687 Common - LrgB family protein Pput_4485 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 148546669 Common - cationic amino acid ABC transporter, periplasmic binding protein Pput_1429 172 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148548685 Common - ABC transporter related Pput_3477 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 148550236 Nonpathogen - hypothetical protein Pput_5035 1 None None None 148550029 Common - integral membrane protein, YccS/YhfK family Pput_4827 51 COG1289 COG1289, Predicted membrane protein Function unknown 148548730 Common - acyl-CoA dehydrogenase domain protein Pput_3522 167 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148546690 Common - dihydrolipoamide dehydrogenase Pput_1450 243 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 148548161 Common - putative prophage repressor Pput_2951 159 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 148549804 Common lldD L-lactate dehydrogenase Pput_4602 129 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 148548811 Common fadA 3-ketoacyl-CoA thiolase Pput_3605 176 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 148549407 Common - hypothetical protein Pput_4201 5 None None None 148548192 Common - sigma54 specific transcriptional regulator, Fis family Pput_2982 170 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148549226 Common - phospholipid/glycerol acyltransferase Pput_4020 153 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 148548268 Common - aldehyde dehydrogenase Pput_3058 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148546556 Common - urea amidolyase related protein Pput_1314 115 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 148550452 Common - FMN-binding negative transcriptional regulator Pput_5252 60 COG2808 PaiB, Transcriptional regulator Transcription 148546503 Common - quinolinate synthetase Pput_1260 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 148545453 Common - transcriptional regulator, MarR family Pput_0196 54 COG1846 MarR, Transcriptional regulators Transcription 148549521 Common - sulfate transporter Pput_4316 161 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 148545473 Common - hypothetical protein Pput_0216 16 COG5589 COG5589, Uncharacterized conserved protein Function unknown 148546958 Common - MLTD_N domain protein Pput_1720 151 COG1388 LytE, FOG: LysM repeat Cell envelope biogenesis, outer membrane 148550507 Nonpathogen - hypothetical protein Pput_5307 1 None None None 148545807 Common ribA GTP cyclohydrolase II Pput_0557 195 COG0807 RibA, GTP cyclohydrolase II Coenzyme metabolism 148546683 Common - carbon storage regulator, CsrA Pput_1443 77 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 148548495 Common - outer membrane efflux protein Pput_3287 74 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148546945 Common - potassium-transporting ATPase subunit A Pput_1707 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 148548711 Common - hypothetical protein Pput_3503 6 None None None 148550208 Common - hypothetical protein Pput_5006 8 None None None 148547706 Common - bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase Pput_2489 213 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148548725 Common - hypothetical protein Pput_3517 1 None None None 148546806 Common - pyruvate kinase Pput_1568 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 148547421 Common - Endoribonuclease L-PSP Pput_2200 150 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 148547719 Common - hypothetical protein Pput_2502 22 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148548433 Common thrS threonyl-tRNA synthetase Pput_3225 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 148545620 Common - (Glutamate--ammonia-ligase) adenylyltransferase Pput_0365 119 COG1391 GlnE, Glutamine synthetase adenylyltransferase Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms 148548567 Common - hypothetical protein Pput_3359 2 None None None 148545925 Common - Fimbrial protein pilin Pput_0675 74 COG4969 PilA, Tfp pilus assembly protein, major pilin PilA Cell motility and secretion / Intracellular trafficking and secretion 148547048 Common - FAD dependent oxidoreductase Pput_1813 107 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148549912 Common - cobalt-precorrin-6x reductase Pput_4710 61 COG2099 CobK, Precorrin-6x reductase Coenzyme metabolism 148546406 Common - beta-lactamase Pput_1163 98 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 148549034 Common - hypothetical protein Pput_3828 1 None None None 148546713 Common flgK flagellar hook-associated protein FlgK Pput_1474 119 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 148546675 Common - Arginine N-succinyltransferase Pput_1435 37 COG3138 AstA, Arginine/ornithine N-succinyltransferase beta subunit Amino acid transport and metabolism 148546026 Common - hypothetical protein Pput_0780 3 COG3056 COG3056, Uncharacterized lipoprotein Cell envelope biogenesis, outer membrane 148548358 Common - alpha/beta hydrolase fold Pput_3148 86 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148550177 Common - hypothetical protein Pput_4975 3 None None None 148545930 Common - hypothetical protein Pput_0683 2 None None None 148548556 Common - integral membrane sensor signal transduction histidine kinase Pput_3348 204 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148548343 Common - GCN5-related N-acetyltransferase Pput_3133 12 COG0456 RimI, Acetyltransferases General function prediction only 148548953 Common - pili assembly chaperone Pput_3747 25 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 148546571 Common - putative ribonuclease BN Pput_1329 110 COG1295 Rbn, Predicted membrane protein Function unknown 148548839 Common - Rh family protein/ammonium transporter Pput_3633 194 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 148548830 Common - erythronate-4-phosphate dehydrogenase Pput_3624 222 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 148546909 Common - protein of unknown function DUF599 Pput_1671 25 COG3821 COG3821, Predicted membrane protein Function unknown 148546436 Common - hypothetical protein Pput_1193 3 None None None 148549905 Common - hypothetical protein Pput_4703 2 None None None 148549452 Common - L-carnitine dehydratase/bile acid-inducible protein F Pput_4246 115 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 148548082 Common - RND efflux system, outer membrane lipoprotein, NodT family Pput_2869 126 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148549749 Common - penicillin-binding protein 1B Pput_4547 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 148548535 Common dkgB 2,5-diketo-D-gluconate reductase B Pput_3327 176 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 148546135 Common - TonB-dependent siderophore receptor Pput_0891 114 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 148546484 Common - putative regulatory protein, FmdB family Pput_1241 69 COG2331 COG2331, Uncharacterized protein conserved in bacteria Function unknown 148549413 Common - efflux transporter, RND family, MFP subunit Pput_4207 141 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148546796 Common - Asp/Glu racemase Pput_1557 43 COG4126 COG4126, Hydantoin racemase Amino acid transport and metabolism 148546252 Common - cyanate transporter Pput_1009 77 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 148549842 Common - HI0933 family protein Pput_4640 88 COG2081 COG2081, Predicted flavoproteins General function prediction only 148550139 Common - choline dehydrogenase Pput_4937 91 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 148547125 Common - Asp/Glu racemase Pput_1895 43 COG3473 COG3473, Maleate cis-trans isomerase Secondary metabolites biosynthesis, transport, and catabolism 148547158 Nonpathogen - hypothetical protein Pput_1933 1 None None None 148549437 Common - putative CheW protein Pput_4231 9 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 148545813 Common - exodeoxyribonuclease VII small subunit Pput_0563 9 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 148547173 Common - cytochrome c, class I Pput_1948 42 COG3258 COG3258, Cytochrome c Energy production and conversion 148547751 Common - diguanylate cyclase/phosphodiesterase Pput_2534 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148545521 Common - RNA-binding S4 domain protein Pput_0265 105 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 148547024 Common - hypothetical protein Pput_1789 1 None None None 148549801 Common smpB SsrA-binding protein Pput_4599 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 148546740 Common fliI flagellum-specific ATP synthase Pput_1501 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 148549120 Common - short-chain dehydrogenase/reductase SDR Pput_3914 185 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 148548097 Common - transcriptional regulator, LysR family Pput_2884 91 COG0583 LysR, Transcriptional regulator Transcription 148545971 Common - hypothetical protein Pput_0725 10 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 148550080 Common - poly(3-hydroxyalkanoate) depolymerase Pput_4878 122 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148546632 Common - type I secretion outer membrane protein, TolC family Pput_1392 130 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148545968 Common obgE GTPase ObgE Pput_0722 249 COG0536 Obg, Predicted GTPase General function prediction only 148547731 Common - Dyp-type peroxidase family Pput_2514 45 COG2837 COG2837, Predicted iron-dependent peroxidase Inorganic ion transport and metabolism 148545584 Common - Membrane dipeptidase Pput_0329 101 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 148548508 Common - leucine-rich repeat protein Pput_3300 5 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 148550238 Nonpathogen - hypothetical protein Pput_5038 1 None None None 148550334 Common cyaY frataxin-like protein Pput_5134 44 COG1965 CyaY, Protein implicated in iron transport, frataxin homolog Inorganic ion transport and metabolism 148546700 Common flgA flagellar basal body P-ring biosynthesis protein FlgA Pput_1460 69 COG1261 FlgA, Flagellar basal body P-ring biosynthesis protein Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 148546607 Common - hypothetical protein Pput_1367 101 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 148545666 Common - hypothetical protein Pput_0411 2 None None None 148547383 Nonpathogen - membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG) Pput_2162 1 COG3788 COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily General function prediction only 148549994 Common - protein of unknown function UPF0227 Pput_4792 48 COG3150 COG3150, Predicted esterase General function prediction only 148550330 Common - protein of unknown function DUF188 Pput_5130 94 COG1671 COG1671, Uncharacterized protein conserved in bacteria Function unknown 148550216 Common - Thymidylate synthase-like protein Pput_5014 128 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 148549009 Common rpmF 50S ribosomal protein L32 Pput_3803 83 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 148548115 Common - fatty acid desaturase Pput_2903 26 None None None 148546361 Common - ybaK/ebsC protein Pput_1118 120 COG2606 EbsC, Uncharacterized conserved protein Function unknown 148546587 Common - 3-oxoacyl-(acyl carrier protein) synthase III Pput_1345 197 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 148547928 Common - helix-turn-helix- domain containing protein, AraC type Pput_2712 121 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148546346 Common - NUDIX hydrolase Pput_1103 79 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 148548764 Common - putative aminotransferase Pput_3557 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 148545661 Common - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Pput_0406 210 COG0388 COG0388, Predicted amidohydrolase General function prediction only 148549870 Common - hypothetical protein Pput_4668 1 None None None 148550056 Common - hypothetical protein Pput_4854 121 COG2353 COG2353, Uncharacterized conserved protein Function unknown 148549271 Common - integral membrane sensor signal transduction histidine kinase Pput_4065 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148549855 Common - hypothetical protein Pput_4653 4 None None None 148546418 Common - Extracellular ligand-binding receptor Pput_1175 146 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 148547277 Common - catechol 1,2-dioxygenase Pput_2055 50 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 148546754 Common - Flagellar biosynthesis pathway component FlhA-like protein Pput_1515 47 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 148546336 Common - hypothetical protein Pput_1093 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 148548455 Common - hypothetical protein Pput_3247 1 None None None 148547611 Common - major facilitator superfamily MFS_1 Pput_2390 125 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148550089 Common - 2-polyprenylphenol 6-hydroxylase Pput_4887 185 COG0661 AarF, Predicted unusual protein kinase General function prediction only 148550090 Common hisI phosphoribosyl-AMP cyclohydrolase Pput_4888 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 148546285 Common - Haem oxygenase Pput_1042 9 COG3230 HemO, Heme oxygenase Inorganic ion transport and metabolism 148548969 Common - Sporulation domain protein Pput_3763 7 COG3147 DedD, Uncharacterized protein conserved in bacteria Function unknown 148546947 Common - potassium-transporting ATPase subunit C Pput_1709 95 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 148545598 Common - Threonine aldolase Pput_0343 116 COG2008 GLY1, Threonine aldolase Amino acid transport and metabolism 148545746 Common rplP 50S ribosomal protein L16 Pput_0494 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 148546635 Common - ATP-dependent DNA helicase RecQ Pput_1395 220 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 148548009 Common - hypothetical protein Pput_2795 10 None None None 148548736 Common - transcriptional regulator, LysR family Pput_3528 191 COG0583 LysR, Transcriptional regulator Transcription 148545604 Common - formyltetrahydrofolate deformylase Pput_0349 219 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 148547375 Common - helix-turn-helix- domain containing protein, AraC type Pput_2154 46 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148550286 Common - spermidine/putrescine ABC transporter ATPase subunit Pput_5086 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 148550191 Common - peptidase M16 domain protein Pput_4989 153 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 148547053 Common - hypothetical protein Pput_1818 41 COG2915 COG2915, Uncharacterized protein involved in purine metabolism General function prediction only 148547216 Nonpathogen - hypothetical protein Pput_1994 1 COG5178 PRP8, U5 snRNP spliceosome subunit RNA processing and modification 148549256 Common - DNA replication initiation factor Pput_4050 206 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 148550384 Common - hypothetical protein Pput_5184 1 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 148550133 Common - carboxyl-terminal protease Pput_4931 182 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 148545928 Nonpathogen - hypothetical protein Pput_0681 1 None None None 148548598 Common - NinB family protein Pput_3390 12 None None None 148547139 Common - short chain dehydrogenase Pput_1909 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148548010 Common - hypothetical protein Pput_2796 4 None None None 148547743 Common - ornithine cyclodeaminase Pput_2526 88 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 148548252 Common - hypothetical protein Pput_3042 24 None None None 148549018 Common - 3-deoxy-manno-octulosonate cytidylyltransferase Pput_3812 141 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 148548356 Common - General substrate transporter Pput_3146 131 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 148548501 Common - integral membrane sensor signal transduction histidine kinase Pput_3293 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148549090 Common - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase Pput_3884 224 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 148549235 Common - hypothetical protein Pput_4029 1 None None None 148546146 Common prfC peptide chain release factor 3 Pput_0902 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 148545653 Common - aminotransferase class-III Pput_0398 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 148546725 Common - NAD-dependent epimerase/dehydratase Pput_1486 198 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 148548689 Common - methyl-accepting chemotaxis sensory transducer Pput_3481 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148548857 Common - OmpF family protein Pput_3651 166 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 148549080 Common - zinc/iron permease Pput_3874 105 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 148546536 Common - putative transcriptional regulator, AsnC family Pput_1293 154 COG1522 Lrp, Transcriptional regulators Transcription 148547816 Common - hypothetical protein Pput_2599 67 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 148548453 Common - FAD dependent oxidoreductase Pput_3245 121 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148546027 Common - hypothetical protein Pput_0781 1 None None None 148549747 Common - protein of unknown function DUF446 Pput_4545 32 COG3098 COG3098, Uncharacterized protein conserved in bacteria Function unknown 148550262 Common - D-3-phosphoglycerate dehydrogenase Pput_5062 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 148545337 Common - TPR repeat-containing protein Pput_0080 10 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 148547936 Common - transcriptional regulator, LysR family Pput_2720 161 COG0583 LysR, Transcriptional regulator Transcription 148550350 Common - response regulator receiver protein Pput_5150 157 COG4566 TtrR, Response regulator Signal transduction mechanisms 148550130 Common - Rhodanese domain protein Pput_4928 128 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 148548470 Common - hypothetical protein Pput_3262 7 COG5642 COG5642, Uncharacterized conserved protein Function unknown 148546353 Common - polar amino acid ABC transporter, inner membrane subunit Pput_1110 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 148545885 Common - transcriptional regulator, LysR family Pput_0635 107 COG0583 LysR, Transcriptional regulator Transcription 148549135 Common - glycosyl transferase, family 2 Pput_3929 154 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 148546082 Common - Cytochrome o ubiquinol oxidase subunit IV Pput_0838 54 COG3125 CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 Energy production and conversion 148548837 Common - Peptidase M15A Pput_3631 19 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 148549057 Common - transcriptional regulator, LysR family Pput_3851 180 COG0583 LysR, Transcriptional regulator Transcription 148549794 Common - chaperone protein DnaJ Pput_4592 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 148550075 Common pyrC dihydroorotase Pput_4873 211 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 148545376 Common - Cytochrome c oxidase, subunit II Pput_0119 144 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 148548616 Nonpathogen - hypothetical protein Pput_3408 1 None None None 148549657 Common - transcriptional regulator, LysR family Pput_4455 94 COG0583 LysR, Transcriptional regulator Transcription 148546846 Common - hypothetical protein Pput_1608 22 COG3198 COG3198, Uncharacterized protein conserved in bacteria Function unknown 148549926 Common - GCN5-related N-acetyltransferase Pput_4724 124 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 148545318 Common - two component heavy metal response transcriptional regulator, winged helix family Pput_0061 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148548476 Common - hypothetical protein Pput_3268 2 None None None 148548479 Common - 2'-5' RNA ligase Pput_3271 48 COG1514 LigT, 2'-5' RNA ligase Translation, ribosomal structure and biogenesis 148548546 Common - Spore coat U domain protein Pput_3338 9 COG5430 COG5430, Uncharacterized secreted protein Function unknown 148549449 Common - NADH:flavin oxidoreductase/NADH oxidase Pput_4243 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 148545832 Common - Ethanolamine ammonia lyase large subunit Pput_0582 55 COG4303 EutB, Ethanolamine ammonia-lyase, large subunit Amino acid transport and metabolism 148546214 Common gatA aspartyl/glutamyl-tRNA amidotransferase subunit A Pput_0971 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 148547494 Common - sigma54 specific transcriptional regulator, Fis family Pput_2273 173 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148549002 Common - aminodeoxychorismate lyase Pput_3796 185 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 148548647 Common - hypothetical protein Pput_3439 19 None None None 148546164 Common - extracellular solute-binding protein, family 5 Pput_0921 207 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 148549127 Common - Beta-ketoacyl synthase-like protein Pput_3921 221 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 148549050 Common - heat shock protein HtpX Pput_3844 194 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 148545363 Common - hypothetical protein Pput_0106 1 None None None 148550427 Common - Secreted repeat of unknown function Pput_5227 36 COG4315 COG4315, Uncharacterized protein conserved in bacteria Function unknown 148549817 Common - Non-specific serine/threonine protein kinase Pput_4615 141 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 148548106 Common - Rieske (2Fe-2S) domain protein Pput_2894 64 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 148549537 Common - NAD-dependent epimerase/dehydratase Pput_4332 73 COG2910 COG2910, Putative NADH-flavin reductase General function prediction only 148547710 Common - peptidase S14, ClpP Pput_2493 3 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 148549373 Common - CTP synthetase Pput_4167 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 148548636 Common - 6-pyruvoyl tetrahydropterin synthase and hypothetical protein Pput_3428 125 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 148548059 Common ureB urease subunit beta Pput_2845 96 COG0832 UreB, Urea amidohydrolase (urease) beta subunit Amino acid transport and metabolism 148547278 Common - acetyltransferase-like protein Pput_2056 12 COG5628 COG5628, Predicted acetyltransferase General function prediction only 148547297 Common - permease for cytosine/purine, uracil, thiamine, allantoin Pput_2075 32 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 148545793 Common - hypothetical protein Pput_0543 13 None None None 148546476 Common - hypothetical protein Pput_1233 1 None None None 148549863 Common - Sel1 domain protein repeat-containing protein Pput_4661 67 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 148548405 Common - glutaminase Pput_3197 72 COG2066 GlsA, Glutaminase Amino acid transport and metabolism 148548325 Common - PAAR repeat-containing protein Pput_3115 16 COG4104 COG4104, Uncharacterized conserved protein Function unknown 148548000 Common cysS cysteinyl-tRNA synthetase Pput_2786 242 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 148548593 Nonpathogen - hypothetical protein Pput_3385 1 None None None 148546971 Common - phage transcriptional activator, Ogr/delta Pput_1733 4 None None None 148548121 Nonpathogen - hypothetical protein Pput_2910 1 None None None 148548388 Common - hypothetical protein Pput_3180 1 None None None 148548854 Common - nitrite transporter Pput_3648 96 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 148550097 Common - methyl-accepting chemotaxis sensory transducer Pput_4895 141 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148548883 Common - transcriptional regulator, GntR family Pput_3677 106 COG2188 PhnF, Transcriptional regulators Transcription 148547307 Common - alpha/beta hydrolase fold Pput_2085 199 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148548661 Common - protein of unknown function DUF214 Pput_3453 86 COG3127 COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Secondary metabolites biosynthesis, transport, and catabolism 148545913 Common - pseudouridine synthase, RluA family Pput_0663 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 148550341 Common - hypothetical protein Pput_5141 3 None None None 148546200 Common - NAD-dependent epimerase/dehydratase Pput_0957 182 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 148545987 Common - Egg lysin (Sperm-lysin) Pput_0741 41 COG4949 COG4949, Uncharacterized membrane-anchored protein conserved in bacteria Function unknown 148546978 Common - NADH dehydrogenase subunit H Pput_1740 190 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 148550434 Common - phosphate ABC transporter, ATPase subunit Pput_5234 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 148548602 Common - hypothetical protein Pput_3394 10 None None None 148547947 Common - methyl-accepting chemotaxis sensory transducer Pput_2731 103 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148546115 Common - transcriptional regulator, BadM/Rrf2 family Pput_0871 114 COG1959 COG1959, Predicted transcriptional regulator Transcription 148548697 Common - methyl-accepting chemotaxis sensory transducer Pput_3489 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148547964 Common - hypothetical protein Pput_2748 7 None None None 148546627 Common - Na+/solute symporter Pput_1387 169 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 148548128 Common - hypothetical protein Pput_2917 21 None None None 148548690 Common - transcriptional regulator, XRE family Pput_3482 26 COG1476 COG1476, Predicted transcriptional regulators Transcription 148545706 Common trpD anthranilate phosphoribosyltransferase Pput_0454 217 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 148547313 Common - FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pput_2092 136 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 148545307 Common - transcriptional regulator, LysR family Pput_0050 24 COG0583 LysR, Transcriptional regulator Transcription 148547915 Common - NADH:flavin oxidoreductase/NADH oxidase Pput_2699 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 148546834 Common - hypothetical protein Pput_1596 16 None None None 148549553 Common - beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family Pput_4348 119 COG1414 IclR, Transcriptional regulator Transcription 148546317 Common - hypothetical protein Pput_1074 3 None None None 148549802 Common - GntR domain protein Pput_4600 151 COG2186 FadR, Transcriptional regulators Transcription 148548272 Common - hypothetical protein Pput_3062 6 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 148548800 Common - transcription-repair coupling factor Pput_3594 223 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 148548021 Common - hypothetical protein Pput_2807 1 None None None 148545415 Common - Mammalian cell entry related domain protein Pput_0158 94 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 148547879 Common - hypothetical protein Pput_2663 8 None None None 148547910 Common - hypothetical protein Pput_2694 4 None None None 148550412 Common - putative endoribonuclease L-PSP Pput_5212 189 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 148546451 Common - plasmid stabilization system Pput_1208 24 COG2026 RelE, Cytotoxic translational repressor of toxin-antitoxin stability system Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning 148545322 Nonpathogen - hypothetical protein Pput_0065 1 None None None 148547259 Common - Enoyl-CoA hydratase/isomerase Pput_2037 181 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 148546190 Common - uncharacterised conserved protein UCP028101 Pput_0947 24 COG3490 COG3490, Uncharacterized protein conserved in bacteria Function unknown 148548947 Nonpathogen - hypothetical protein Pput_3741 1 None None None 148545536 Common - dTDP-4-dehydrorhamnose 3,5-epimerase Pput_0280 170 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 148548197 Common - ABC transporter related Pput_2987 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 148547830 Common - YD repeat protein Pput_2613 72 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 148548427 Common ihfA integration host factor subunit alpha Pput_3219 208 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 148550068 Common - response regulator receiver protein Pput_4866 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148548235 Common - hypothetical protein Pput_3025 23 None None None 148546385 Common - ICC-like protein phosphoesterase-like protein Pput_1142 49 COG1407 COG1407, Predicted ICC-like phosphoesterases General function prediction only 148550242 Common - hypothetical protein Pput_5042 1 None None None 148549673 Common - hypothetical protein Pput_4471 19 None None None 148545960 Common - hypothetical protein Pput_0714 1 None None None 148548279 Common - gluconate transporter Pput_3069 76 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 148546730 Common - flagellar hook-associated 2 domain protein Pput_1491 99 COG1345 FliD, Flagellar capping protein Cell motility and secretion 148549066 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase Pput_3860 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148549475 Common - NUDIX hydrolase Pput_4269 95 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 148545382 Common - hypothetical protein Pput_0125 11 None None None 148546007 Common prfA peptide chain release factor 1 Pput_0761 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 148546601 Common - hypothetical protein Pput_1361 55 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 148548215 Common - ABC transporter related Pput_3005 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 148549631 Common - Carboxylesterase Pput_4429 83 COG0400 COG0400, Predicted esterase General function prediction only 148546308 Common - 2-isopropylmalate synthase Pput_1065 211 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 148549877 Common - lipoyl synthase Pput_4675 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 148546993 Common - hypothetical protein Pput_1755 1 None None None 148546785 Common - periplasmic protein thiol--disulphide oxidoreductase DsbE Pput_1546 146 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 148547035 Common - dihydropyrimidine dehydrogenase Pput_1800 144 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 148545370 Common - peptidase M3A and M3B, thimet/oligopeptidase F Pput_0113 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 148546372 Common - argininosuccinate synthase Pput_1129 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 148549394 Common glnD PII uridylyl-transferase Pput_4188 124 COG2844 GlnD, UTP:GlnB (protein PII) uridylyltransferase Posttranslational modification, protein turnover, chaperones 148548972 Common - N-(5'-phosphoribosyl)anthranilate isomerase Pput_3766 194 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 148545982 Common - anti-FecI sigma factor, FecR Pput_0736 43 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 148549108 Common - ABC-2 type transporter Pput_3902 23 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 148549509 Common - Uncharacterized protein UPF0065 Pput_4303 73 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 148549285 Common - oxidoreductase FAD/NAD(P)-binding domain protein Pput_4079 107 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 148548557 Common - two component transcriptional regulator, winged helix family Pput_3349 206 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148547643 Common - acriflavin resistance protein Pput_2423 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 148549306 Common - hypothetical protein Pput_4100 10 COG4733 COG4733, Phage-related protein, tail component Function unknown 148546359 Common glpK glycerol kinase Pput_1116 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 148549612 Common rpsI 30S ribosomal protein S9 Pput_4408 228 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 148546562 Nonpathogen - hypothetical protein Pput_1320 1 None None None 148547979 Common - Methyltransferase type 12 Pput_2765 38 COG2519 GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases Translation, ribosomal structure and biogenesis 148547675 Common - Ion transport 2 domain protein Pput_2458 23 None None None 148545873 Common - methyl-accepting chemotaxis sensory transducer Pput_0623 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148545563 Common - major facilitator superfamily MFS_1 Pput_0308 80 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 148547399 Common - polar amino acid ABC transporter, inner membrane subunit Pput_2178 173 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 148546460 Common - integral membrane sensor signal transduction histidine kinase Pput_1217 216 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148547781 Common - hypothetical protein Pput_2564 7 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 148546071 Common - putative CheW protein Pput_0826 156 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 148545354 Common trpA tryptophan synthase subunit alpha Pput_0097 217 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 148548398 Nonpathogen - hypothetical protein Pput_3190 1 COG4907 COG4907, Predicted membrane protein Function unknown 148548809 Common - DNA topoisomerase I Pput_3603 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 148549008 Common - fatty acid/phospholipid synthesis protein Pput_3802 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 148550314 Common - secretion protein HlyD family protein Pput_5114 143 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 148545703 Common - anthranilate synthase component I Pput_0451 223 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 148549122 Nonpathogen - GCN5-related N-acetyltransferase Pput_3916 2 COG0456 RimI, Acetyltransferases General function prediction only 148550416 Common - biopolymer transport protein ExbD Pput_5216 133 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 148547683 Nonpathogen - hypothetical protein Pput_2466 1 None None None 148547978 Common - Saccharopine dehydrogenase Pput_2764 52 COG1748 LYS9, Saccharopine dehydrogenase and related proteins Amino acid transport and metabolism 148550276 Common - sulfate ABC transporter, inner membrane subunit CysW Pput_5076 220 COG4208 CysW, ABC-type sulfate transport system, permease component Inorganic ion transport and metabolism 148546175 Common - intracellular protease, PfpI family Pput_0932 138 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 148546064 Common - hypothetical protein Pput_0819 42 COG3530 COG3530, Uncharacterized protein conserved in bacteria Function unknown 148548108 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Pput_2896 47 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 148549823 Common - hypothetical protein Pput_4621 4 None None None 148546049 Common - glycosyl transferase, group 1 Pput_0803 181 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 148549195 Common - putative aminopeptidase 2 Pput_3989 44 COG1362 LAP4, Aspartyl aminopeptidase Amino acid transport and metabolism 148549629 Common - polar amino acid ABC transporter, inner membrane subunit Pput_4427 170 COG4597 BatB, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 148545778 Common - formate dehydrogenase accessory protein FdhE Pput_0526 32 COG3058 FdhE, Uncharacterized protein involved in formate dehydrogenase formation Posttranslational modification, protein turnover, chaperones 148549713 Common - hypothetical protein Pput_4511 4 None None None 148546883 Common - RNA polymerase sigma factor Pput_1645 106 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148550156 Common - hypothetical protein Pput_4954 3 COG3168 PilP, Tfp pilus assembly protein PilP Cell motility and secretion / Intracellular trafficking and secretion 148546580 Common - alpha/beta hydrolase fold Pput_1338 96 COG2267 PldB, Lysophospholipase Lipid metabolism 148549213 Common - hypothetical protein Pput_4007 4 None None None 148550395 Common - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase Pput_5195 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 148545693 Common - heat shock protein DnaJ domain protein Pput_0441 40 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 148549851 Common - hypothetical protein Pput_4649 4 None None None 148549896 Common - MJ0042 family finger-like protein Pput_4694 21 COG4982 COG4982, 3-oxoacyl- acyl-carrier protein 148547512 Common - hypothetical protein Pput_2291 8 COG3167 PilO, Tfp pilus assembly protein PilO Cell motility and secretion / Intracellular trafficking and secretion 148546501 Common - amino acid permease-associated region Pput_1258 187 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 148547604 Common - Deoxyribonuclease I Pput_2383 35 COG2356 EndA, Endonuclease I DNA replication, recombination, and repair 148548679 Common - hypothetical protein Pput_3471 1 None None None 148545833 Common - ethanolamine transproter Pput_0583 154 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 148548282 Common - putative transcriptional regulator, GntR family Pput_3072 200 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 148549956 Common - replicative DNA helicase Pput_4754 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 148549458 Common - Protein-disulfide isomerase-like protein Pput_4252 68 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 148549466 Common - signal recognition particle protein Pput_4260 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 148550376 Common - Acetyl-CoA hydrolase-like protein Pput_5176 71 COG0427 ACH1, Acetyl-CoA hydrolase Energy production and conversion 148547443 Common - PAS/PAC sensor signal transduction histidine kinase Pput_2222 178 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 148546988 Common - hypothetical protein Pput_1750 7 None None None 148549948 Common - nicotinate phosphoribosyltransferase Pput_4746 63 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 148548905 Common - protein of unknown function DUF1329 Pput_3699 17 None None None 148547040 Common - Ribonuclease Z Pput_1805 109 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 148546936 Common gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase Pput_1698 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 148546217 Common - rod shape-determining protein MreC Pput_0974 150 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 148549836 Common - Alcohol dehydrogenase, zinc-binding domain protein Pput_4634 188 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 148549928 Common - chaperone DnaJ domain protein Pput_4726 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 148550269 Common - hypothetical protein Pput_5069 5 None None None 148550118 Common - protein of unknown function UPF0153 Pput_4916 8 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 148546820 Common - Chitin deacetylase Pput_1582 94 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 148547182 Common - protein of unknown function DUF1330 Pput_1957 31 COG5470 COG5470, Uncharacterized conserved protein Function unknown 148548779 Common - tRNA-dihydrouridine synthase A Pput_3573 207 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 148550304 Common - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase Pput_5104 143 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 148547695 Common - phenylacetic acid degradation protein PaaD Pput_2478 53 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 148548550 Nonpathogen - hypothetical protein Pput_3342 1 None None None 148547721 Common - Methyltransferase type 12 Pput_2504 19 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 148549412 Common - acriflavin resistance protein Pput_4206 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 148549768 Common pgi glucose-6-phosphate isomerase Pput_4566 195 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 148549723 Common - gamma-glutamyltransferase Pput_4521 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 148545845 Common - ATP-NAD/AcoX kinase Pput_0595 15 COG3199 COG3199, Uncharacterized conserved protein Function unknown 148547416 Common - anti-FecI sigma factor, FecR Pput_2195 35 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 148545327 Common - protein of unknown function DUF81 Pput_0070 16 COG0730 COG0730, Predicted permeases General function prediction only 148549314 Common - hypothetical protein Pput_4108 6 None None None 148547227 Common - response regulator receiver sensor signal transduction histidine kinase Pput_2005 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148547881 Common - acyl-CoA dehydrogenase domain protein Pput_2665 149 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148547473 Common - Endoribonuclease L-PSP Pput_2252 48 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 148546294 Common - integral membrane sensor signal transduction histidine kinase Pput_1051 175 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148546519 Nonpathogen - hypothetical protein Pput_1276 1 None None None 148546053 Common - putative sulfate transport protein CysZ Pput_0808 41 COG2981 CysZ, Uncharacterized protein involved in cysteine biosynthesis Amino acid transport and metabolism 148546779 Common - heme exporter protein CcmA Pput_1540 249 COG4133 CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component Posttranslational modification, protein turnover, chaperones 148547192 Common - ABC transporter related Pput_1967 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 148547013 Common - Propionyl-CoA carboxylase Pput_1776 144 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 148546611 Nonpathogen - hypothetical protein Pput_1371 1 None None None 148545712 Common - Ubiquinone biosynthesis protein COQ7-like protein Pput_0460 50 COG2941 CAT5, Ubiquinone biosynthesis protein COQ7 Coenzyme metabolism 148546575 Common - Ketosteroid isomerase-like protein Pput_1333 12 COG4319 COG4319, Ketosteroid isomerase homolog Function unknown 148549728 Common - transcriptional regulator, LysR family Pput_4526 186 COG0583 LysR, Transcriptional regulator Transcription 148547734 Common - MgtC/SapB transporter Pput_2517 119 COG1285 SapB, Uncharacterized membrane protein Function unknown 148548524 Common - electron transport protein SCO1/SenC Pput_3316 104 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 148546458 Common - hypothetical protein Pput_1215 3 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 148546747 Common fliM flagellar motor switch protein FliM Pput_1508 112 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 148546232 Common - PTS IIA-like nitrogen-regulatory protein PtsN Pput_0989 134 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 148550402 Common rph ribonuclease PH Pput_5202 196 COG0689 Rph, RNase PH Translation, ribosomal structure and biogenesis 148546079 Common - ubiquinol oxidase, subunit II Pput_0835 116 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 148546811 Common - protein of unknown function DUF336 Pput_1573 69 COG3193 GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol General function prediction only 148548998 Common - transcriptional regulator, TetR family Pput_3792 94 COG1309 AcrR, Transcriptional regulator Transcription 148547078 Common - short-chain dehydrogenase/reductase SDR Pput_1844 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148545851 Common - methyl-accepting chemotaxis sensory transducer Pput_0601 132 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148549700 Common - acetyl-CoA acetyltransferase Pput_4498 168 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 148546036 Common - glycerate dehydrogenase Pput_0790 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 148546780 Common - heme exporter protein CcmB Pput_1541 62 COG2386 CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 148549145 Common - beta-lactamase domain protein Pput_3939 129 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 148547972 Common - dienelactone hydrolase-like protein Pput_2757 49 COG4188 COG4188, Predicted dienelactone hydrolase General function prediction only 148548028 Common - hypothetical protein Pput_2814 2 None None None 148546709 Common flgG flagellar basal body rod protein FlgG Pput_1470 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 148546058 Common - signaling modulator of AmpD, AmpE Pput_0813 21 COG3725 AmpE, Membrane protein required for beta-lactamase induction Defense mechanisms 148549718 Common - tRNA (uracil-5-)-methyltransferase Pput_4516 188 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 148546511 Common - Uncharacterized lipoprotein Pput_1268 30 COG3317 NlpB, Uncharacterized lipoprotein Cell envelope biogenesis, outer membrane 148545856 Common - arginine decarboxylase Pput_0606 71 COG1166 SpeA, Arginine decarboxylase (spermidine biosynthesis) Amino acid transport and metabolism 148548019 Common - major facilitator superfamily MFS_1 Pput_2805 19 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148545857 Common - protein of unknown function DUF1568 Pput_0607 11 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 148549500 Common algU RNA polymerase sigma factor AlgU Pput_4294 174 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148547250 Common - ABC transporter related Pput_2028 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 148547857 Common - major facilitator superfamily MFS_1 Pput_2641 76 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148549137 Common - GtrA family protein Pput_3931 15 COG2246 COG2246, Predicted membrane protein Function unknown 148546174 Common - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase and related enzymes-like protein Pput_0931 151 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 148547326 Common - choline/carnitine/betaine transporter Pput_2105 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 148549834 Common - major facilitator superfamily MFS_1 Pput_4632 83 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148546354 Common - polar amino acid ABC transporter, inner membrane subunit Pput_1111 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 148548519 Common - branched-chain amino acid transport Pput_3311 8 COG4392 COG4392, Predicted membrane protein Function unknown 148547545 Common - transcriptional regulator, AraC family Pput_2324 73 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148547612 Common - hydrolase of the alpha/beta superfamily-like protein Pput_2391 75 COG2945 COG2945, Predicted hydrolase of the alpha/beta superfamily General function prediction only 148546583 Common - FAD dependent oxidoreductase Pput_1341 108 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148548423 Common - short-chain dehydrogenase/reductase SDR Pput_3215 10 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 148546442 Common - Aldose 1-epimerase Pput_1199 21 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 148548355 Common - hypothetical protein Pput_3145 3 None None None 148546673 Common - helix-turn-helix- domain containing protein, AraC type Pput_1433 148 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148549628 Common - polar amino acid ABC transporter, inner membrane subunit Pput_4426 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 148546068 Common - hypothetical protein Pput_0823 1 None None None 148546763 Common flhF flagellar biosynthesis regulator FlhF Pput_1524 247 COG1419 FlhF, Flagellar GTP-binding protein Cell motility and secretion 148545975 Common - ribosomal-protein-alanine acetyltransferase Pput_0729 197 COG0456 RimI, Acetyltransferases General function prediction only 148546516 Common - hypothetical protein Pput_1273 1 None None None 148547856 Common - Auxin Efflux Carrier Pput_2640 124 COG0679 COG0679, Predicted permeases General function prediction only 148549914 Common - band 7 protein Pput_4712 208 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 148547806 Common - hypothetical protein Pput_2589 1 None None None 148548734 Common - leucine-rich repeat-containing protein, typical subtype Pput_3526 13 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 148549638 Common - hypothetical protein Pput_4436 87 COG3022 COG3022, Uncharacterized protein conserved in bacteria Function unknown 148550273 Common - sigma-54 factor, interaction domain-containing protein Pput_5073 170 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 148550398 Common - acetylglutamate kinase Pput_5198 219 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 148545336 Common - lipid A biosynthesis lauroyl acyltransferase Pput_0079 114 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 148549116 Common - KpsF/GutQ family protein Pput_3910 166 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 148549118 Common - Capsule polysaccharide biosynthesis protein Pput_3912 30 COG3563 KpsC, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 148549741 Common - putative sulfite oxidase subunit YedZ Pput_4539 72 COG2717 COG2717, Predicted membrane protein Function unknown 148547148 Nonpathogen - hypothetical protein Pput_1921 1 None None None 148545416 Common - ABC transporter related Pput_0159 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 148549813 Common - restriction modification system DNA specificity domain Pput_4611 56 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 148549425 Common - hypothetical protein Pput_4219 4 None None None 148546063 Common - PTS system, fructose subfamily, IIC subunit Pput_0818 68 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 148546477 Common - prolyl-tRNA synthetase Pput_1234 247 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 148546939 Common - hypothetical protein Pput_1701 1 None None None 148549064 Common - GreA/GreB family elongation factor Pput_3858 14 COG0782 GreA, Transcription elongation factor Transcription 148546076 Common - anaerobic nitric oxide reductase transcription regulator Pput_0831 169 COG3604 FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains Transcription / Signal transduction mechanisms 148546340 Common - FAD-binding 9, siderophore-interacting domain protein Pput_1097 63 COG2375 ViuB, Siderophore-interacting protein Inorganic ion transport and metabolism 148550375 Common - xanthine phosphoribosyltransferase Pput_5175 120 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 148547123 Common - monooxygenase, FAD-binding Pput_1893 86 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 148549399 Common - arsenate reductase and related Pput_4193 106 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 148549752 Common - protein of unknown function DUF399 Pput_4550 31 COG3016 PhuW, Uncharacterized iron-regulated protein Function unknown 148550010 Common - O-antigen polymerase Pput_4808 14 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 148546982 Common - bifunctional NADH:ubiquinone oxidoreductase subunit C/D Pput_1744 191 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 148548554 Common - transcriptional regulator, LysR family Pput_3346 176 COG0583 LysR, Transcriptional regulator Transcription 148549703 Common - cobalamin synthesis protein, P47K Pput_4501 126 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 148546573 Common - GCN5-related N-acetyltransferase Pput_1331 5 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 148547642 Common - 3-oxoacyl-(acyl carrier protein) synthase II Pput_2422 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148549128 Common - glycosyl transferase, family 2 Pput_3922 122 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 148546505 Common - peptidase M48, Ste24p Pput_1262 124 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 148548488 Common - GCN5-related N-acetyltransferase Pput_3280 7 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 148546046 Common - hypothetical protein Pput_0800 10 None None None 148550240 Nonpathogen - hypothetical protein Pput_5040 1 None None None 148547031 Common - glucose-6-phosphate 1-dehydrogenase Pput_1796 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 148547051 Common - Cupin 4 family protein Pput_1816 59 COG2850 COG2850, Uncharacterized conserved protein Function unknown 148549144 Common - NAD-dependent epimerase/dehydratase Pput_3938 110 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 148546404 Common dinG ATP-dependent DNA helicase DinG Pput_1161 125 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 148545717 Common argC N-acetyl-gamma-glutamyl-phosphate reductase Pput_0465 213 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 148546586 Common - ATP-dependent helicase HrpA Pput_1344 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 148547553 Common - PAS/PAC sensor hybrid histidine kinase Pput_2332 165 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148549832 Common - transcriptional regulator, LysR family Pput_4630 180 COG0583 LysR, Transcriptional regulator Transcription 148549450 Common - single-stranded-DNA-specific exonuclease RecJ Pput_4244 192 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 148547231 Common - beta-ketothiolase Pput_2009 176 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 148548788 Common queF 7-cyano-7-deazaguanine reductase Pput_3582 117 COG2904 COG2904, Uncharacterized protein conserved in bacteria Function unknown 148545543 Common - two component transcriptional regulator, winged helix family Pput_0287 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148550164 Common argS arginyl-tRNA synthetase Pput_4962 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 148550230 Nonpathogen - hypothetical protein Pput_5028 1 None None None 148549688 Common - LrgA family protein Pput_4486 28 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 148545862 Common - Polypeptide-transport-associated domain protein, ShlB-type Pput_0612 29 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 148546879 Common - Transcription factor jumonji Pput_1641 26 COG3255 COG3255, Putative sterol carrier protein Lipid metabolism 148545340 Common fmt methionyl-tRNA formyltransferase Pput_0083 221 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 148549199 Common - ABC-type Fe3+ transport system periplasmic component-like protein Pput_3993 55 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 148546438 Common - yecA family protein Pput_1195 24 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 148546638 Common - conserved hypothetical selenoprotein Pput_1398 29 COG3526 COG3526, Uncharacterized protein conserved in bacteria Posttranslational modification, protein turnover, chaperones 148545823 Common - copper resistance B precursor Pput_0573 43 COG3667 PcoB, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 148547106 Common - Oligogalacturonate-specific porin Pput_1876 11 None None None 148550365 Common - isochorismatase hydrolase Pput_5165 81 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 148545730 Common rplJ 50S ribosomal protein L10 Pput_0478 210 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 148546290 Common - glyceraldehyde-3-phosphate dehydrogenase, type I Pput_1047 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 148549381 Common fabZ (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase Pput_4175 186 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 148549621 Common - putative transcriptional regulator, AsnC family Pput_4417 155 COG1522 Lrp, Transcriptional regulators Transcription 148548066 Common - major facilitator superfamily MFS_1 Pput_2852 205 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148549282 Common - PP-loop domain protein Pput_4076 163 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 148549843 Common - DEAD/DEAH box helicase domain protein Pput_4641 230 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 148549727 Common - protein of unknown function DUF81 Pput_4525 22 None None None 148546525 Common - FAD dependent oxidoreductase Pput_1282 107 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148545780 Common - selenocysteine-specific translation elongation factor Pput_0528 249 COG3276 SelB, Selenocysteine-specific translation elongation factor Translation, ribosomal structure and biogenesis 148546445 Common - Tripartite ATP-independent periplasmic transporter, DctQ component Pput_1202 28 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 148548855 Common - protein kinase Pput_3649 152 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 148546185 Common - Methyltransferase type 11 Pput_0942 9 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 148549663 Common - transcriptional regulator, LysR family Pput_4461 106 COG0583 LysR, Transcriptional regulator Transcription 148547566 Common - gluconate transporter Pput_2345 76 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 148546798 Common - putative transcriptional regulator, AsnC family Pput_1559 54 COG1522 Lrp, Transcriptional regulators Transcription 148545352 Common - hypothetical protein Pput_0095 4 COG2910 COG2910, Putative NADH-flavin reductase General function prediction only 148548245 Common - arsenical pump membrane protein Pput_3035 116 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 148545704 Common - outer membrane autotransporter barrel domain Pput_0452 44 COG3240 COG3240, Phospholipase/lecithinase/hemolysin Lipid metabolism / General function prediction only 148550313 Common - protein of unknown function DUF55 Pput_5113 94 COG2947 COG2947, Uncharacterized conserved protein Function unknown 148546178 Common - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Pput_0935 163 COG0388 COG0388, Predicted amidohydrolase General function prediction only 148545988 Common - aldehyde dehydrogenase Pput_0742 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148548537 Common - major facilitator superfamily MFS_1 Pput_3329 90 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148548239 Common - intracellular protease, PfpI family Pput_3029 160 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 148547849 Common - OmpA/MotB domain protein Pput_2633 95 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 148550347 Common - ATPase with chaperone activity-like protein Pput_5147 180 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 148548380 Common - Trans-aconitate 2-methyltransferase Pput_3170 70 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 148548823 Common - glycosyl transferase, group 1 Pput_3617 91 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 148547946 Common - cobalamin synthesis protein, P47K Pput_2730 127 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 148547891 Common - protein of unknown function DUF849 Pput_2675 55 COG3246 COG3246, Uncharacterized conserved protein Function unknown 148549192 Common - septum site-determining protein MinD Pput_3986 138 COG2894 MinD, Septum formation inhibitor-activating ATPase Cell division and chromosome partitioning 148546926 Common - thioesterase superfamily protein Pput_1688 26 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 148545937 Common - extracellular solute-binding protein, family 3 Pput_0691 169 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148548103 Common - alpha/beta hydrolase fold Pput_2891 155 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148546370 Common - dihydroorotase Pput_1127 86 COG0418 PyrC, Dihydroorotase Nucleotide transport and metabolism 148546977 Common - NADH dehydrogenase subunit I Pput_1739 191 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 148546223 Common - peptidase U62, modulator of DNA gyrase Pput_0980 170 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 148545966 Common rplU 50S ribosomal protein L21 Pput_0720 150 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 148548275 Common - protein of unknown function DUF404 Pput_3065 89 COG2308 COG2308, Uncharacterized conserved protein Function unknown 148547418 Common - transcriptional regulator, LysR family Pput_2197 186 COG0583 LysR, Transcriptional regulator Transcription 148547968 Common - Uncharacterized protein putative lipoprotein Pput_2752 19 COG4461 LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein Function unknown 148546604 Common - sodium:dicarboxylate symporter Pput_1364 157 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 148547349 Common - hypothetical protein Pput_2128 11 None None None 148550294 Common - adenylate cyclase Pput_5094 37 COG3025 COG3025, Uncharacterized conserved protein Function unknown 148546189 Common - efflux transporter, RND family, MFP subunit Pput_0946 165 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148547593 Common - hypothetical protein Pput_2372 43 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 148547602 Common - major facilitator superfamily MFS_1 Pput_2381 122 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148550414 Common - NAD-dependent epimerase/dehydratase Pput_5214 106 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 148546579 Common - MaoC domain protein dehydratase Pput_1337 98 COG2030 MaoC, Acyl dehydratase Lipid metabolism 148546790 Common - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pput_1551 228 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 148545772 Common - protein of unknown function DUF81 Pput_0520 92 COG0730 COG0730, Predicted permeases General function prediction only 148549506 Common - integral membrane sensor signal transduction histidine kinase Pput_4300 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148547351 Common - ImcF domain protein Pput_2130 47 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 148548934 Common - Rhomboid family protein Pput_3728 30 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 148546563 Common - protein of unknown function DUF6, transmembrane Pput_1321 32 None None None 148546000 Common - peptidyl-tRNA hydrolase Pput_0754 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 148549678 Common - YebG family protein Pput_4476 8 COG3141 COG3141, Uncharacterized protein conserved in bacteria Function unknown 148549334 Common - protein of unknown function DUF1364 Pput_4128 8 None None None 148545859 Common - alpha-2-macroglobulin domain protein Pput_0609 79 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 148546450 Common - bifunctional antitoxin/transcriptional repressor RelB Pput_1207 11 COG3077 RelB, DNA-damage-inducible protein J DNA replication, recombination, and repair 148545369 Common - nucleic-acid-binding protein containing a Zn-ribbon domain-like protein Pput_0112 22 COG3529 COG3529, Predicted nucleic-acid-binding protein containing a Zn-ribbon domain General function prediction only 148545699 Common - binding-protein-dependent transport systems inner membrane component Pput_0447 150 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 148547493 Common - hypothetical protein Pput_2272 1 None None None 148548391 Common - transcriptional regulator, LysR family Pput_3183 110 COG0583 LysR, Transcriptional regulator Transcription 148547358 Common - cellulose synthase regulator protein Pput_2137 20 None None None 148545264 Common - hypothetical protein Pput_0005 8 None None None 148550338 Common - protein of unknown function DUF484 Pput_5138 56 COG3159 COG3159, Uncharacterized protein conserved in bacteria Function unknown 148550418 Common - transcriptional regulator, LysR family Pput_5218 190 COG0583 LysR, Transcriptional regulator Transcription 148548044 Common - ATPase/kinase involved in NAD metabolism-like protein Pput_2830 8 COG3172 NadR, Predicted ATPase/kinase involved in NAD metabolism Coenzyme metabolism 148548864 Common - phosphoenolpyruvate synthase Pput_3658 235 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 148548389 Common - Glutathione S-transferase, N-terminal domain Pput_3181 98 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148549305 Common - hypothetical protein Pput_4099 7 None None None 148547149 Common - hypothetical protein Pput_1922 13 COG5377 COG5377, Phage-related protein, predicted endonuclease DNA replication, recombination, and repair 148547662 Common - hypothetical protein Pput_2443 4 None None None 148547502 Common - hypothetical protein Pput_2281 4 None None None 148545525 Common - thioesterase superfamily protein Pput_0269 27 COG0824 FcbC, Predicted thioesterase General function prediction only 148546650 Common - YciI-like protein Pput_1410 75 COG2350 COG2350, Uncharacterized protein conserved in bacteria Function unknown 148545302 Nonpathogen - hypothetical protein Pput_0045 1 None None None 148549470 Common purT phosphoribosylglycinamide formyltransferase 2 Pput_4264 205 COG0027 PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Nucleotide transport and metabolism 148548329 Common - NIPSNAP family containing protein Pput_3119 17 None None None 148547708 Common - hypothetical protein Pput_2491 12 None None None 148550110 Common - protein of unknown function DUF886 Pput_4908 41 COG3758 COG3758, Uncharacterized protein conserved in bacteria Function unknown 148549578 Common - 2-dehydropantoate 2-reductase Pput_4373 118 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 148549641 Common - type IV pilus assembly PilZ Pput_4439 3 None None None 148546169 Common - integral membrane sensor signal transduction histidine kinase Pput_0926 53 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148548371 Common - 4-hydroxyphenylpyruvate dioxygenase Pput_3161 83 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 148546391 Common - putative transcriptional regulator, GntR family Pput_1148 164 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 148548174 Nonpathogen - hypothetical protein Pput_2964 1 None None None 148548365 Common - type I secretion system ATPase Pput_3155 249 COG4618 ArpD, ABC-type protease/lipase transport system, ATPase and permease components General function prediction only 148547578 Common - Lysine exporter protein (LYSE/YGGA) Pput_2357 68 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148547014 Common - acyl-CoA dehydrogenase domain protein Pput_1777 170 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148546233 Common - sigma 54 modulation protein/ribosomal protein S30EA Pput_0990 131 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 148547408 Common - acriflavin resistance protein Pput_2187 182 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 148549796 Common - GrpE protein Pput_4594 230 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 148548451 Common - Guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein Pput_3243 96 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 148546029 Common - phospholipid/glycerol acyltransferase Pput_0783 17 COG2937 PlsB, Glycerol-3-phosphate O-acyltransferase Lipid metabolism 148547624 Common - acetyl-CoA acetyltransferase Pput_2403 166 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 148546839 Common recR recombination protein RecR Pput_1601 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 148548155 Common - hypothetical protein Pput_2945 22 None None None 148548634 Nonpathogen - hypothetical protein Pput_3426 1 None None None 148547034 Common - transcriptional regulator, TetR family Pput_1799 66 COG1309 AcrR, Transcriptional regulator Transcription 148545436 Common - TonB-dependent siderophore receptor Pput_0179 118 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148548512 Common - transcriptional regulator, LysR family Pput_3304 176 COG0583 LysR, Transcriptional regulator Transcription 148550441 Common - hypothetical protein Pput_5241 18 COG3495 COG3495, Uncharacterized protein conserved in bacteria Function unknown 148548887 Common - CsbD family protein Pput_3681 4 COG3237 COG3237, Uncharacterized protein conserved in bacteria Function unknown 148545662 Common - amine oxidase Pput_0407 19 COG1231 COG1231, Monoamine oxidase Amino acid transport and metabolism 148548478 Common - AraC-type transcriptional regulator domain protein Pput_3270 131 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148547251 Common - protein of unknown function DUF214 Pput_2029 43 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 148548406 Nonpathogen - hypothetical protein Pput_3198 1 None None None 148549797 Common - DNA repair protein RecN Pput_4595 198 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 148548300 Common - pentapeptide repeat protein Pput_3090 90 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 148546838 Common - hypothetical protein Pput_1600 179 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 148545311 Nonpathogen - hypothetical protein Pput_0054 1 None None None 148546568 Common - RNA binding S1 domain protein Pput_1326 44 COG2996 COG2996, Uncharacterized protein conserved in bacteria Function unknown 148547312 Common - methyl-accepting chemotaxis sensory transducer Pput_2091 146 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148547912 Common - transcriptional regulator, LysR family Pput_2696 124 COG0583 LysR, Transcriptional regulator Transcription 148550096 Common - methyl-accepting chemotaxis sensory transducer Pput_4894 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148549056 Common - protein of unknown function DUF1127 Pput_3850 1 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 148548718 Common - putative monovalent cation/H+ antiporter subunit A Pput_3510 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 148548473 Common - transcriptional regulator, AraC family Pput_3265 86 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148549714 Common - cytochrome d ubiquinol oxidase, subunit II Pput_4512 147 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 148546685 Common - Arc domain protein DNA binding domain protein Pput_1445 9 None None None 148549514 Common - uracil-DNA glycosylase Pput_4308 129 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 148548127 Common - hypothetical protein Pput_2916 24 None None None 148550074 Common pyrB aspartate carbamoyltransferase catalytic subunit Pput_4872 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 148548303 Common - ABC-type branched-chain amino acid transport systems periplasmic component-like protein Pput_3093 19 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 148545374 Nonpathogen - hypothetical protein Pput_0117 1 None None None 148549818 Common - hypothetical protein Pput_4616 8 None None None 148548417 Nonpathogen - hypothetical protein Pput_3209 2 None None None 148546860 Common - extracellular solute-binding protein, family 3 Pput_1622 7 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148550119 Common - PhoPQ-activated pathogenicity-related protein-like protein Pput_4917 14 COG4287 PqaA, PhoPQ-activated pathogenicity-related protein General function prediction only 148547926 Common - Alcohol dehydrogenase, zinc-binding domain protein Pput_2710 174 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 148547676 Common - putative phosphoketolase Pput_2459 65 COG3957 COG3957, Phosphoketolase Carbohydrate transport and metabolism 148548574 Common - hypothetical protein Pput_3366 6 None None None 148546832 Common ligA NAD-dependent DNA ligase LigA Pput_1594 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 148546995 Common - transcriptional regulator, LysR family Pput_1757 174 COG0583 LysR, Transcriptional regulator Transcription 148547025 Common - malto-oligosyltrehalose synthase Pput_1790 70 COG3280 TreY, Maltooligosyl trehalose synthase Carbohydrate transport and metabolism 148546482 Common - Ferritin, Dps family protein Pput_1239 143 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 148548644 Common prpB 2-methylisocitrate lyase Pput_3436 115 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 148546667 Common - hypothetical protein Pput_1427 1 None None None 148549084 Common - hypothetical protein Pput_3878 28 COG1791 COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 148546715 Common - glycosyl transferase, family 2 Pput_1476 52 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 148548493 Common - heavy metal efflux pump, CzcA family Pput_3285 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 148547263 Common alr alanine racemase Pput_2041 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 148548250 Common - hypothetical protein Pput_3040 15 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 148546156 Common - sodium/hydrogen exchanger Pput_0913 96 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 148545582 Common - hypothetical protein Pput_0327 1 None None None 148546848 Common - cytochrome c oxidase, cbb3-type, subunit III Pput_1610 86 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 148549766 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase Pput_4564 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 148549411 Common - hypothetical protein Pput_4205 26 None None None 148549919 Common - Propeptide, PepSY amd peptidase M4 Pput_4717 73 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 148548891 Common - protein of unknown function DUF453 Pput_3685 55 COG2828 COG2828, Uncharacterized protein conserved in bacteria Function unknown 148550057 Common - cytochrome B561 Pput_4855 65 COG3038 CybB, Cytochrome B561 Energy production and conversion 148546117 Common - scaffold protein Pput_0873 149 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 148545878 Common - drug resistance transporter, Bcr/CflA subfamily Pput_0628 224 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148547171 Common - hypothetical protein Pput_1946 1 None None None 148545353 Common - Dopa 4,5-dioxygenase Pput_0096 17 COG3805 DodA, Aromatic ring-cleaving dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 148547619 Common - MscS Mechanosensitive ion channel Pput_2398 227 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 148549221 Common - nitrite reductase (NAD(P)H), large subunit Pput_4015 190 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 148550484 Nonpathogen - hypothetical protein Pput_5284 1 None None None 148549907 Common - precorrin-2 C(20)-methyltransferase Pput_4705 117 COG2243 CobF, Precorrin-2 methylase Coenzyme metabolism 148550287 Common - extracellular solute-binding protein, family 1 Pput_5087 132 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 148548600 Nonpathogen - hypothetical protein Pput_3392 1 None None None 148549173 Common - hypothetical protein Pput_3967 18 COG3089 COG3089, Uncharacterized protein conserved in bacteria Function unknown 148549788 Common - protein of unknown function UPF0044 Pput_4586 92 COG1534 COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein Translation, ribosomal structure and biogenesis 148546872 Common - Uncharacterized MobA-related protein Pput_1634 55 COG2068 COG2068, Uncharacterized MobA-related protein General function prediction only 148545591 Common - Rieske (2Fe-2S) domain protein Pput_0336 81 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 148547951 Common - two component transcriptional regulator, winged helix family Pput_2735 218 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148548609 Common - protein of unknown function DUF1654 Pput_3401 1 None None None 148546625 Common - transcriptional regulator, LysR family Pput_1385 180 COG0583 LysR, Transcriptional regulator Transcription 148546892 Common - hypothetical protein Pput_1654 2 None None None 148548762 Common - ProQ activator of osmoprotectant transporter ProP Pput_3555 4 COG3109 ProQ, Activator of osmoprotectant transporter ProP Signal transduction mechanisms 148546657 Common - amino acid permease-associated region Pput_1417 169 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 148549935 Common - DNA-binding transcriptional activator Pput_4733 11 None None None 148548673 Common - PpiC-type peptidyl-prolyl cis-trans isomerase Pput_3465 172 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 148546367 Common - BFD domain protein (2Fe-2S)-binding domain protein Pput_1124 36 COG2906 Bfd, Bacterioferritin-associated ferredoxin Inorganic ion transport and metabolism 148547733 Common - Carotene hydroxylase Pput_2516 11 None None None 148546300 Common - Carbohydrate-selective porin OprB Pput_1057 21 COG3659 OprB, Carbohydrate-selective porin Cell envelope biogenesis, outer membrane 148548904 Common - protein of unknown function DUF202 Pput_3698 13 COG2149 COG2149, Predicted membrane protein Function unknown 148550358 Common - isochorismatase hydrolase Pput_5158 83 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 148546781 Common - heme exporter protein CcmC Pput_1542 120 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 148549872 Common - Rare lipoprotein B Pput_4670 17 COG2980 RlpB, Rare lipoprotein B Cell envelope biogenesis, outer membrane 148545603 Common - sarcosine oxidase, gamma subunit family Pput_0348 29 COG4583 COG4583, Sarcosine oxidase gamma subunit Amino acid transport and metabolism 148549511 Common - protein of unknown function DUF112, transmembrane Pput_4305 75 COG3333 COG3333, Uncharacterized protein conserved in bacteria Function unknown 148549556 Common - protein of unknown function DUF853, NPT hydrolase putative Pput_4351 76 COG0433 COG0433, Predicted ATPase General function prediction only 148550048 Common - protein of unknown function DUF6, transmembrane Pput_4846 46 COG2510 COG2510, Predicted membrane protein Function unknown 148550034 Common - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Pput_4832 224 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148547095 Common - protein of unknown function DUF1264 Pput_1863 8 None None None 148550202 Common - putative signal transduction protein Pput_5000 62 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 148546619 Common - hypothetical protein Pput_1379 1 None None None 148546624 Common - protein of unknown function DUF1228 Pput_1384 54 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148546286 Common - TonB-dependent hemoglobin/transferrin/lactoferrin family receptor Pput_1043 129 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 148546389 Common - exonuclease of the beta-lactamase fold involved in RNA processing-like protein Pput_1146 55 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 148546413 Common - membrane protein-like protein Pput_1170 2 COG3650 COG3650, Predicted membrane protein Function unknown 148549238 Common - hypothetical protein Pput_4032 4 None None None 148550387 Common - major facilitator superfamily MFS_1 Pput_5187 29 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 148547389 Nonpathogen - hypothetical protein Pput_2168 1 None None None 148545644 Common - 8-amino-7-oxononanoate synthase Pput_0389 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 148549998 Common - hypothetical protein Pput_4796 13 None None None 148547137 Common - hypothetical protein Pput_1907 2 None None None 148548710 Common - peptidase M24 Pput_3502 169 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 148546392 Common - Serine O-acetyltransferase Pput_1149 194 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 148550438 Common - major facilitator superfamily MFS_1 Pput_5238 131 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148548322 Common - hypothetical protein Pput_3112 1 None None None 148546288 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Pput_1045 90 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148546850 Common - cytochrome c oxidase, cbb3-type, subunit II Pput_1612 82 COG2993 CcoO, Cbb3-type cytochrome oxidase, cytochrome c subunit Energy production and conversion 148548143 Common - hypothetical protein Pput_2933 22 None None None 148549435 Common - chemotaxis-specific methylesterase Pput_4229 174 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 148546216 Common - cell shape determining protein, MreB/Mrl family Pput_0973 236 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 148547272 Common - FAD-linked oxidoreductase Pput_2050 34 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 148550408 Common - Glutamate--putrescine ligase Pput_5208 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 148550496 Common - F0F1 ATP synthase subunit gamma Pput_5296 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 148548018 Common - cytochrome B561 Pput_2804 51 COG3038 CybB, Cytochrome B561 Energy production and conversion 148545531 Common nudE ADP-ribose diphosphatase NudE Pput_0275 138 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 148548069 Common - Altronate dehydratase Pput_2855 73 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 148549088 Common - hypothetical protein Pput_3882 1 None None None 148545556 Common - ABC transporter related Pput_0301 249 COG4598 HisP, ABC-type histidine transport system, ATPase component Amino acid transport and metabolism 148545796 Common - Methyltransferase type 12 Pput_0546 32 COG3897 COG3897, Predicted methyltransferase General function prediction only 148547714 Common - integral membrane protein-like protein Pput_2497 53 COG0392 COG0392, Predicted integral membrane protein Function unknown 148549605 Common gmhA phosphoheptose isomerase Pput_4401 122 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 148547072 Common - DsrC family protein Pput_1837 57 COG2920 DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit Inorganic ion transport and metabolism 148548004 Common - peptidase S45, penicillin amidase Pput_2790 65 COG2366 COG2366, Protein related to penicillin acylase General function prediction only 148549651 Nonpathogen - hypothetical protein Pput_4449 1 None None None 148550085 Common - hypothetical protein Pput_4883 1 None None None 148546203 Common - regulatory protein, ArsR Pput_0960 47 COG0640 ArsR, Predicted transcriptional regulators Transcription 148548095 Common - alpha/beta hydrolase fold Pput_2882 170 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148548113 Common - membrane protein involved in aromatic hydrocarbon degradation Pput_2901 48 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 148546162 Common - binding-protein-dependent transport systems inner membrane component Pput_0919 216 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 148545668 Common - hypothetical protein Pput_0413 4 None None None 148547962 Common - protein of unknown function DUF159 Pput_2746 95 COG2135 COG2135, Uncharacterized conserved protein Function unknown 148547363 Common - ATPase AAA-2 domain protein Pput_2142 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 148546121 Common - ferredoxin, 2Fe-2S type, ISC system Pput_0877 65 COG0633 Fdx, Ferredoxin Energy production and conversion 148547735 Common - GCN5-related N-acetyltransferase Pput_2518 34 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 148547868 Common - ecotin precursor Pput_2652 23 COG4574 Eco, Serine protease inhibitor ecotin General function prediction only 148549405 Common - succinyl-diaminopimelate desuccinylase Pput_4199 198 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 148547763 Common - membrane-bound metal-dependent hydrolase Pput_2546 26 COG1988 COG1988, Predicted membrane-bound metal-dependent hydrolases General function prediction only 148549901 Common - integral membrane sensor hybrid histidine kinase Pput_4699 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148549183 Common - protein of unknown function DUF485 Pput_3977 52 COG3162 COG3162, Predicted membrane protein Function unknown 148549312 Common - hypothetical protein Pput_4106 3 None None None 148549296 Common - hypothetical protein Pput_4090 4 None None None 148547694 Common - 3-hydroxybutyryl-CoA dehydrogenase Pput_2477 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 148549930 Common - hypothetical protein Pput_4728 17 COG0628 PerM, Predicted permease General function prediction only 148546426 Common - hypothetical protein Pput_1183 1 None None None 148548305 Common - ABC transporter related Pput_3095 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 148546905 Common - dihydrolipoamide dehydrogenase Pput_1667 244 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 148547651 Common - CinA domain protein Pput_2431 191 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 148548349 Common - Mammalian cell entry related domain protein Pput_3139 66 COG3008 PqiB, Paraquat-inducible protein B General function prediction only 148546940 Common - hypothetical protein Pput_1702 28 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148548463 Common - FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pput_3255 248 COG3634 AhpF, Alkyl hydroperoxide reductase, large subunit Posttranslational modification, protein turnover, chaperones 148550150 Common gltD glutamate synthase subunit beta Pput_4948 197 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 148547511 Common - hypothetical protein Pput_2290 8 None None None 148545451 Common - hypothetical protein Pput_0194 11 COG1438 ArgR, Arginine repressor Transcription 148545474 Common - ABC transporter related Pput_0217 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 148546134 Common - flavodoxin/nitric oxide synthase Pput_0890 102 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 148546950 Common - transcriptional regulator, LysR family Pput_1712 141 COG0583 LysR, Transcriptional regulator Transcription 148546491 Common - Tol-Pal system, TolQ Pput_1248 145 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 148548332 Common - Xylose isomerase domain protein TIM barrel Pput_3122 32 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 148546955 Common - binding-protein-dependent transport systems inner membrane component Pput_1717 219 COG4174 COG4174, ABC-type uncharacterized transport system, permease component General function prediction only 148549973 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase Pput_4771 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 148550026 Common - drug resistance transporter, EmrB/QacA subfamily Pput_4824 192 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148550175 Common - putative deoxyribonucleotide triphosphate pyrophosphatase Pput_4973 226 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 148549375 Common - tRNA(Ile)-lysidine synthetase Pput_4169 202 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 148550492 Common - transcriptional regulator, DeoR family Pput_5292 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 148545999 Common - translation-associated GTPase Pput_0753 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 148548812 Common fadB multifunctional fatty acid oxidation complex subunit alpha Pput_3606 161 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 148548873 Common - hypothetical protein Pput_3667 3 None None None 148546863 Common - ABC-type multidrug transport system ATPase component-like protein Pput_1625 57 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 148549734 Common - transcriptional regulator, LysR family Pput_4532 118 COG0583 LysR, Transcriptional regulator Transcription 148549964 Common - binding-protein-dependent transport systems inner membrane component Pput_4762 217 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 148546749 Common - flagellar biosynthesis protein, FliO Pput_1510 15 COG3190 FliO, Flagellar biogenesis protein Cell motility and secretion 148549251 Common - cob(II)yrinic acid a,c-diamide reductase Pput_4045 85 COG0778 NfnB, Nitroreductase Energy production and conversion 148546211 Common - Na+/Ca+ antiporter, CaCA family Pput_0968 109 COG0530 ECM27, Ca2+/Na+ antiporter Inorganic ion transport and metabolism 148545546 Nonpathogen - hypothetical protein Pput_0290 1 COG4680 COG4680, Uncharacterized protein conserved in bacteria Function unknown 148545647 Common bioD dithiobiotin synthetase Pput_0392 169 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 148546139 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Pput_0895 108 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148547489 Common - cobalamin biosynthesis protein CobW Pput_2268 127 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 148550005 Common - FAD dependent oxidoreductase Pput_4803 6 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 148548985 Common - dihydrouridine synthase, DuS Pput_3779 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 148546254 Common - hypothetical protein Pput_1011 65 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 148548898 Common - iron-containing alcohol dehydrogenase Pput_3692 161 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 148547159 Common - DoxX family protein Pput_1934 83 COG2259 COG2259, Predicted membrane protein Function unknown 148549071 Common - enoyl-CoA hydratase Pput_3865 127 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 148546030 Common - hypothetical protein Pput_0784 24 None None None 148549566 Common - hypothetical protein Pput_4361 1 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 148546734 Common - PAS/PAC sensor signal transduction histidine kinase Pput_1495 184 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148548724 Common - hypothetical protein Pput_3516 1 None None None 148548284 Common - pyruvate carboxyltransferase Pput_3074 154 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 148549402 Common - Fe-S metabolism associated SufE Pput_4196 81 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 148547504 Common - electron transport protein SCO1/SenC Pput_2283 50 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 148546551 Common - hypothetical protein Pput_1309 6 None None None 148546235 Common - ABC transporter related Pput_0992 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 148546160 Common dppF dipeptide transporter ATP-binding subunit Pput_0917 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 148549777 Common - tRNA pseudouridine synthase B Pput_4575 245 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 148548267 Common - transcriptional regulator, LysR family Pput_3057 186 COG0583 LysR, Transcriptional regulator Transcription 148547093 Common - Propeptide, PepSY amd peptidase M4 Pput_1861 5 None None None 148546707 Common - hypothetical protein Pput_1468 3 None None None 148549033 Common - outer membrane autotransporter barrel domain Pput_3827 46 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148545400 Common - cytochrome c, class I Pput_0143 61 COG2863 COG2863, Cytochrome c553 Energy production and conversion 148547079 Common - transcriptional regulator, LysR family Pput_1845 137 COG0583 LysR, Transcriptional regulator Transcription 148546167 Common - extracellular solute-binding protein, family 5 Pput_0924 210 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 148546691 Common - branched-chain alpha-keto acid dehydrogenase subunit E2 Pput_1451 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 148550343 Common - nitrogen regulatory protein P-II Pput_5143 187 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 148547237 Common - protein of unknown function DUF336 Pput_2015 68 COG3193 GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol General function prediction only 148548323 Common - hypothetical protein Pput_3113 4 None None None 148547462 Common - putative transcriptional regulator, AsnC family Pput_2241 142 COG1522 Lrp, Transcriptional regulators Transcription 148548204 Common - ABC transporter related Pput_2994 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 148550255 Common - integral membrane protein-like protein Pput_5055 1 COG5528 COG5528, Predicted integral membrane protein Function unknown 148547877 Common - hypothetical protein Pput_2661 1 None None None 148545446 Common - hypothetical protein Pput_0189 13 None None None 148547437 Common - Substrate-binding region of ABC-type glycine betaine transport system Pput_2216 66 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 148545744 Common rplV 50S ribosomal protein L22 Pput_0492 224 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 148549151 Common - chorismate mutase Pput_3945 213 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 148546965 Common - NADPH-dependent FMN reductase Pput_1727 107 COG0431 COG0431, Predicted flavoprotein General function prediction only 148548776 Common - Lysine exporter protein (LYSE/YGGA) Pput_3569 115 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148550039 Common - D-erythrose-4-phosphate dehydrogenase Pput_4837 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 148545558 Common - hypothetical protein Pput_0303 1 None None None 148548237 Common - short-chain dehydrogenase/reductase SDR Pput_3027 68 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148546742 Common - anti-sigma-factor antagonist Pput_1503 13 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 148550475 Common - Transketolase, central region Pput_5275 229 COG3958 COG3958, Transketolase, C-terminal subunit Carbohydrate transport and metabolism 148545723 Common - pantothenate kinase Pput_0471 116 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 148547406 Common - Redoxin domain protein Pput_2185 96 COG2077 Tpx, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 148545489 Common - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Pput_0233 194 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148550041 Common - Methyltransferase type 11 Pput_4839 87 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 148546907 Common - succinyl-CoA synthetase subunit alpha Pput_1669 217 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 148545943 Common - putative transcriptional regulator, AsnC family Pput_0697 146 COG1522 Lrp, Transcriptional regulators Transcription 148548844 Common - two component transcriptional regulator, LuxR family Pput_3638 223 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148546108 Common yajC preprotein translocase subunit YajC Pput_0864 174 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 148546431 Common - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Pput_1188 182 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148549442 Common - extracellular solute-binding protein, family 1 Pput_4236 124 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 148548133 Common - transcriptional regulator, XRE family Pput_2922 9 COG1396 HipB, Predicted transcriptional regulators Transcription 148547328 Common - protein of unknown function DUF1289 Pput_2107 1 COG3313 COG3313, Predicted Fe-S protein General function prediction only 148545288 Common - copper-translocating P-type ATPase Pput_0030 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 148549293 Common recX recombination regulator RecX Pput_4087 83 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 148549383 Common - outer membrane chaperone Skp (OmpH) Pput_4177 24 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 148547795 Common - Serine acetyltransferase-like protein Pput_2578 203 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 148550443 Common - phosphoribosylaminoimidazole carboxylase ATPase subunit Pput_5243 194 COG0026 PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) Nucleotide transport and metabolism 148548434 Common - hypothetical protein Pput_3226 1 None None None 148548431 Common rpmI 50S ribosomal protein L35 Pput_3223 140 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 148549484 Common - ATP-dependent protease La Pput_4278 211 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 148548993 Common - aromatic amino acid aminotransferase Pput_3787 70 COG1448 TyrB, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 148545675 Common rpsU 30S ribosomal protein S21 Pput_0423 90 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 148549363 Common surE stationary phase survival protein SurE Pput_4157 186 COG0496 SurE, Predicted acid phosphatase General function prediction only 148549600 Common mraW S-adenosyl-methyltransferase MraW Pput_4395 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 148549472 Common - protein of unknown function DUF1289 Pput_4266 38 COG3313 COG3313, Predicted Fe-S protein General function prediction only 148547356 Common - ATPase involved in chromosome partitioning-like protein Pput_2135 15 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 148547903 Common - hypothetical protein Pput_2687 27 COG5343 COG5343, Uncharacterized protein conserved in bacteria Function unknown 148549542 Common - efflux transporter, RND family, MFP subunit Pput_4337 154 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148548623 Common - hypothetical protein Pput_3415 3 None None None 148547636 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Pput_2415 34 COG3565 COG3565, Predicted dioxygenase of extradiol dioxygenase family General function prediction only 148547993 Common - protein of unknown function RIO1 Pput_2779 66 COG1718 RIO1, Serine/threonine protein kinase involved in cell cycle control Signal transduction mechanisms / Cell division and chromosome partitioning 148546039 Common - protein of unknown function DUF1329 Pput_0793 19 None None None 148546324 Common - twin-arginine translocation protein, TatB subunit Pput_1081 7 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 148547428 Common - transcriptional regulator, LysR family Pput_2207 148 COG0583 LysR, Transcriptional regulator Transcription 148547454 Common - MgtC/SapB transporter Pput_2233 117 COG1285 SapB, Uncharacterized membrane protein Function unknown 148548915 Common - hypothetical protein Pput_3709 16 COG3673 COG3673, Uncharacterized conserved protein Function unknown 148545754 Common rplF 50S ribosomal protein L6 Pput_0502 239 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 148546885 Common - major facilitator superfamily MFS_1 Pput_1647 112 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148547748 Common - transcriptional activator, TenA family Pput_2531 26 COG0819 TenA, Putative transcription activator Transcription 148546292 Common glk glucokinase Pput_1049 91 COG0837 Glk, Glucokinase Carbohydrate transport and metabolism 148545800 Common - riboflavin synthase subunit alpha Pput_0550 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 148545513 Common - transcriptional regulator, TetR family Pput_0257 7 COG1309 AcrR, Transcriptional regulator Transcription 148545875 Common - heavy metal translocating P-type ATPase Pput_0625 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 148549204 Common - HAD-superfamily subfamily IB hydrolase, TIGR01490 Pput_3998 78 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 148546712 Common flgJ peptidoglycan hydrolase Pput_1473 73 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 148549258 Common - hypothetical protein Pput_4052 19 COG3249 COG3249, Uncharacterized protein conserved in bacteria Function unknown 148548341 Common - aldehyde dehydrogenase Pput_3131 188 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148545737 Common - elongation factor Tu Pput_0485 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 148546375 Common - hypothetical protein Pput_1132 1 None None None 148548118 Common - dienelactone hydrolase Pput_2906 54 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 148547771 Common - Rieske (2Fe-2S) domain protein Pput_2554 81 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 148549646 Common algL poly(beta-D-mannuronate) lyase Pput_4444 4 None None None 148545921 Common - zinc-binding protein Pput_0671 61 COG3024 COG3024, Uncharacterized protein conserved in bacteria Function unknown 148548681 Common - extracellular solute-binding protein, family 1 Pput_3473 39 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 148545789 Common - OmpW family protein Pput_0539 70 COG3047 OmpW, Outer membrane protein W Cell envelope biogenesis, outer membrane 148547314 Common - helix-turn-helix- domain containing protein, AraC type Pput_2093 109 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148549360 Common - RNA polymerase sigma factor RpoS Pput_4154 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 148547223 Common - response regulator receiver protein Pput_2001 139 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148549879 Common - hypothetical protein Pput_4677 14 COG2921 COG2921, Uncharacterized conserved protein Function unknown 148547246 Common - outer membrane porin Pput_2024 9 None None None 148545614 Common - hypothetical protein Pput_0359 29 COG4452 CreD, Inner membrane protein involved in colicin E2 resistance Defense mechanisms 148546558 Common - ATPase associated with various cellular activities, AAA_5 Pput_1316 99 COG0714 COG0714, MoxR-like ATPases General function prediction only 148548297 Common - extracellular solute-binding protein, family 3 Pput_3087 16 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148548228 Common - protein of unknown function DUF1365 Pput_3018 61 COG3496 COG3496, Uncharacterized conserved protein Function unknown 148549038 Common - hypothetical protein Pput_3832 1 None None None 148550454 Common - GCN5-related N-acetyltransferase Pput_5254 75 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 148548093 Common - Toluene dioxygenase Pput_2880 26 COG5517 COG5517, Small subunit of phenylpropionate dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 148545271 Common - hypothetical protein Pput_0012 20 None None None 148550300 Common - glycine cleavage system protein H Pput_5100 186 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 148546805 Common - Urea transporter Pput_1567 5 COG4413 Utp, Urea transporter Amino acid transport and metabolism 148547448 Common - short-chain dehydrogenase/reductase SDR Pput_2227 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148547337 Nonpathogen - hypothetical protein Pput_2116 1 None None None 148548216 Common - hypothetical protein Pput_3006 30 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 148547917 Common - hypothetical protein Pput_2701 5 None None None 148547523 Common - ABC transporter related Pput_2302 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 148548064 Common - DEAD_2 domain protein Pput_2850 47 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 148550019 Common - protein of unknown function DUF519 Pput_4817 85 COG2961 ComJ, Protein involved in catabolism of external DNA General function prediction only 148547162 Common - response regulator receiver protein Pput_1937 219 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148547156 Common - hypothetical protein Pput_1931 3 None None None 148545347 Common aroE shikimate 5-dehydrogenase Pput_0090 223 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 148545821 Nonpathogen - hypothetical protein Pput_0571 1 None None None 148545896 Common - peptidylprolyl isomerase, FKBP-type Pput_0646 136 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 148546918 Common - amino acid adenylation domain Pput_1680 221 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 148548948 Common - transcriptional regulator, LysR family Pput_3742 163 COG0583 LysR, Transcriptional regulator Transcription 148545409 Common - hypothetical protein Pput_0152 1 None None None 148550380 Common - D-amino acid dehydrogenase small subunit Pput_5180 143 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148549527 Common - two component, sigma54 specific, transcriptional regulator, Fis family Pput_4322 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148547309 Common - luciferase family protein Pput_2087 131 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 148547432 Common - SCP-like extracellular protein Pput_2211 60 COG2340 COG2340, Uncharacterized protein with SCP/PR1 domains Function unknown 148545828 Common - protein of unknown function DUF980 Pput_0578 57 COG3228 COG3228, Uncharacterized protein conserved in bacteria Function unknown 148546577 Common - Activator of Hsp90 ATPase 1 family protein Pput_1335 56 COG3832 COG3832, Uncharacterized conserved protein Function unknown 148546083 Common - protoheme IX farnesyltransferase Pput_0839 172 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 148549969 Common - HflC protein Pput_4767 179 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 148548952 Nonpathogen - hypothetical protein Pput_3746 1 None None None 148546267 Common - L-serine dehydratase 1 Pput_1024 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 148546845 Common - heavy metal translocating P-type ATPase Pput_1607 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 148547974 Common - amidase Pput_2760 216 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 148547001 Common - GCN5-related N-acetyltransferase Pput_1763 14 COG0456 RimI, Acetyltransferases General function prediction only 148548794 Common - lipoprotein releasing system, transmembrane protein, LolC/E family Pput_3588 158 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 148548759 Common - formate dehydrogenase, alpha subunit Pput_3552 215 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 148549447 Common - hypothetical protein Pput_4241 12 None None None 148545296 Common - protein of unknown function DUF1705 Pput_0039 62 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 148550193 Common - transposase, IS111A/IS1328/IS1533 Pput_4991 59 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 148549171 Common - Glutathione synthase Pput_3965 63 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 148548603 Common - Uncharacterized phage-encoded protein Pput_3395 22 COG3645 COG3645, Uncharacterized phage-encoded protein Function unknown 148550309 Common - hypothetical protein Pput_5109 9 None None None 148548419 Common - hypothetical protein Pput_3211 1 None None None 148547475 Common - protein of unknown function DUF6, transmembrane Pput_2254 24 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 148547113 Common - ABC transporter related Pput_1883 249 COG1124 DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 148546094 Common - selenophosphate synthetase Pput_0850 121 COG0709 SelD, Selenophosphate synthase Amino acid transport and metabolism 148549820 Common - hypothetical protein Pput_4618 85 COG5283 COG5283, Phage-related tail protein Function unknown 148546928 Common - dienelactone hydrolase Pput_1690 88 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 148548290 Common - iron-containing alcohol dehydrogenase Pput_3080 173 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 148548745 Common - AFG1-family ATPase Pput_3538 101 COG1485 COG1485, Predicted ATPase General function prediction only 148550470 Common - hypothetical protein Pput_5270 3 None None None 148545390 Common - hypothetical protein Pput_0133 1 None None None 148549341 Nonpathogen - hypothetical protein Pput_4135 1 None None None 148545277 Common - heavy metal sensor signal transduction histidine kinase Pput_0018 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148546672 Common - ABC transporter related Pput_1432 249 COG4598 HisP, ABC-type histidine transport system, ATPase component Amino acid transport and metabolism 148546776 Common - hypothetical protein Pput_1537 2 COG3774 OCH1, Mannosyltransferase OCH1 and related enzymes Cell envelope biogenesis, outer membrane 148549480 Common - hypothetical protein Pput_4274 36 COG4628 COG4628, Uncharacterized conserved protein Function unknown 148549028 Common fadE acyl-CoA dehydrogenase Pput_3822 158 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148547468 Common - transcriptional regulator, TetR family Pput_2247 86 COG1309 AcrR, Transcriptional regulator Transcription 148546101 Common - GCN5-related N-acetyltransferase Pput_0857 8 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 148546822 Common - Xanthine/uracil/vitamin C permease Pput_1584 143 COG2252 COG2252, Permeases General function prediction only 148545888 Common - Paraquat-inducible protein A Pput_0638 54 COG2995 PqiA, Uncharacterized paraquat-inducible protein A Function unknown 148548747 Common - hypothetical protein Pput_3540 1 None None None 148545316 Common - outer membrane efflux protein Pput_0059 82 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148546020 Common upp uracil phosphoribosyltransferase Pput_0774 166 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 148548165 Nonpathogen - hypothetical protein Pput_2955 1 None None None 148545399 Common - Cytochrome c5-like protein Pput_0142 43 COG3245 CycB, Cytochrome c5 Energy production and conversion 148550184 Common - protein of unknown function DUF214 Pput_4982 117 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 148548544 Common - Spore coat U domain protein Pput_3336 22 COG5430 COG5430, Uncharacterized secreted protein Function unknown 148547058 Common - putative cold-shock DNA-binding domain protein Pput_1823 177 COG1278 CspC, Cold shock proteins Transcription 148549240 Nonpathogen - hypothetical protein Pput_4034 1 None None None 148545916 Common - FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pput_0666 187 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 148546315 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein Pput_1072 239 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 148549561 Common purU formyltetrahydrofolate deformylase Pput_4356 218 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 148549165 Common - fumarate hydratase Pput_3959 212 COG0114 FumC, Fumarase Energy production and conversion 148548071 Common - transcriptional regulator, LysR family Pput_2857 166 COG0583 LysR, Transcriptional regulator Transcription 148549792 Common - carbamoyl phosphate synthase small subunit Pput_4590 234 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 148550032 Common - hypothetical protein Pput_4830 9 COG4519 COG4519, Uncharacterized protein conserved in bacteria Function unknown 148546149 Common - FAD dependent oxidoreductase Pput_0905 102 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148546829 Common - regulatory protein GntR, HTH Pput_1591 118 COG1802 GntR, Transcriptional regulators Transcription 148549095 Common - glutaredoxin Pput_3889 21 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 148545908 Common - inner-membrane translocator Pput_0658 128 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 148545586 Common - NADH:flavin oxidoreductase/NADH oxidase Pput_0331 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 148549024 Common - hypothetical protein Pput_3818 48 COG3216 COG3216, Uncharacterized protein conserved in bacteria Function unknown 148550229 Nonpathogen - hypothetical protein Pput_5027 1 None None None 148548191 Common - Acyl-CoA dehydrogenase, type 2, C-terminal domain Pput_2981 116 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148546698 Common - FlgN family protein Pput_1458 7 COG3418 COG3418, Flagellar biosynthesis/type III secretory pathway chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 148548088 Common - 4-oxalocrotonate decarboxylase Pput_2875 67 COG3971 COG3971, 2-keto-4-pentenoate hydratase Secondary metabolites biosynthesis, transport, and catabolism 148546273 Common - integral membrane protein-like protein Pput_1030 30 COG5572 COG5572, Predicted integral membrane protein Function unknown 148547585 Common - Curlin associated repeat protein Pput_2364 19 None None None 148545992 Common - protein of unknown function DUF344 Pput_0746 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 148549494 Common rnc ribonuclease III Pput_4288 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 148550391 Common rpmG 50S ribosomal protein L33 Pput_5191 142 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 148550144 Common - thioredoxin Pput_4942 231 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 148547086 Common - short chain dehydrogenase Pput_1853 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148550501 Common - F0F1 ATP synthase subunit A Pput_5301 198 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 148547758 Common - FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pput_2541 219 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 148548046 Common - hypothetical protein Pput_2832 4 None None None 148547376 Common - UspA domain protein Pput_2155 126 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 148548523 Common - protein of unknown function DUF461 Pput_3315 80 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 148549853 Common - hypothetical protein Pput_4651 8 None None None 148548614 Nonpathogen - hypothetical protein Pput_3406 1 None None None 148548086 Common - 4-hydroxy-2-ketovalerate aldolase Pput_2873 196 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 148546305 Common - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase Pput_1062 126 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 148547711 Common - protein of unknown function DUF72 Pput_2494 96 COG1801 COG1801, Uncharacterized conserved protein Function unknown 148547188 Common - isochorismatase hydrolase Pput_1963 56 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 148545280 Common - efflux transporter, RND family, MFP subunit Pput_0021 133 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148550000 Common - thiamine biosynthesis protein ThiC Pput_4798 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 148549262 Common - hypothetical protein Pput_4056 1 None None None 148550012 Common - glycosyl transferase, group 1 Pput_4810 202 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 148545360 Common - luciferase family protein Pput_0103 110 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 148546128 Common hisS histidyl-tRNA synthetase Pput_0884 247 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 148548339 Common - response regulator receiver protein Pput_3129 32 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148545958 Common - hypothetical protein Pput_0712 2 None None None 148547749 Common - multicopper oxidase, type 2 Pput_2532 41 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 148546916 Common - TonB-dependent siderophore receptor Pput_1678 98 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148545953 Common - GreA/GreB family elongation factor Pput_0707 53 COG0782 GreA, Transcription elongation factor Transcription 148550489 Common - 3-oxoacid CoA-transferase, A subunit Pput_5289 96 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 148546010 Common - glutamate racemase Pput_0764 190 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 148548732 Common - short-chain dehydrogenase/reductase SDR Pput_3524 217 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148549595 Common mraY phospho-N-acetylmuramoyl-pentapeptide-transferase Pput_4390 223 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 148550087 Common ubiE ubiquinone/menaquinone biosynthesis methyltransferase Pput_4885 220 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 148549984 Common - Metal-dependent hydrolase HDOD Pput_4782 2 None None None 148548831 Common - cell developmental protein SirA Pput_3625 112 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 148548503 Common - DoxX family protein Pput_3295 5 COG2259 COG2259, Predicted membrane protein Function unknown 148548443 Common - ABC transporter related Pput_3235 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 148547802 Common - hypothetical protein Pput_2585 4 None None None 148548655 Common - acetyltransferase-like protein Pput_3447 30 COG2388 COG2388, Predicted acetyltransferase General function prediction only 148545464 Common - two component transcriptional regulator, LytTR family Pput_0207 182 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 148545917 Common - hypothetical protein Pput_0667 2 None None None 148545766 Common - Catalase Pput_0514 127 COG0753 KatE, Catalase Inorganic ion transport and metabolism 148547541 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Pput_2320 60 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 148546248 Common hisD histidinol dehydrogenase Pput_1005 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 148548150 Common - hypothetical protein Pput_2940 19 None None None 148545633 Common - RNA polymerase sigma factor Pput_0378 61 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148547295 Common - nitroreductase Pput_2073 56 COG0778 NfnB, Nitroreductase Energy production and conversion 148546898 Common gltA type II citrate synthase Pput_1660 194 COG0372 GltA, Citrate synthase Energy production and conversion 148550367 Common - FAD dependent oxidoreductase Pput_5167 135 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148547645 Common - transcriptional regulator, TetR family Pput_2425 73 COG1309 AcrR, Transcriptional regulator Transcription 148548633 Nonpathogen - hypothetical protein Pput_3425 1 None None None 148549327 Nonpathogen - protein of unknown function DUF754 Pput_4121 1 None None None 148549397 Common - plasmid maintenance system killer Pput_4191 61 COG3549 HigB, Plasmid maintenance system killer protein General function prediction only 148547382 Nonpathogen - hypothetical protein Pput_2161 2 None None None 148548983 Common - heat shock protein Hsp20 Pput_3777 69 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 148550224 Common - 3-isopropylmalate dehydratase, large subunit Pput_5022 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 148547822 Common - putative succinate dehydrogenase Pput_2605 63 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 148548757 Common - UspA domain protein Pput_3550 34 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 148548185 Common - Beta-ketoacyl synthase-like protein Pput_2975 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148547482 Common - Hydantoinase B/oxoprolinase Pput_2261 93 COG0146 HyuB, N-methylhydantoinase B/acetone carboxylase, alpha subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148545492 Common - NLPA lipoprotein Pput_0236 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 148550468 Common - Protein of unknown function DUF1826 Pput_5268 14 None None None 148546240 Common - ABC transporter related Pput_0997 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 148546753 Common flhB flagellar biosynthesis protein FlhB Pput_1514 130 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 148548961 Common - fimbrial biogenesis outer membrane usher protein Pput_3755 38 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 148546013 Common - Deoxyribodipyrimidine photo-lyase Pput_0767 142 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 148549585 Common - hypothetical protein Pput_4380 2 COG4701 COG4701, Uncharacterized protein conserved in bacteria Function unknown 148549215 Common - helix-turn-helix- domain containing protein, AraC type Pput_4009 116 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148549011 Common - Maf-like protein Pput_3805 190 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 148547300 Common - Lysine exporter protein (LYSE/YGGA) Pput_2078 100 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148549864 Common - Domain of unknown function DUF1820 Pput_4662 15 COG4517 COG4517, Uncharacterized protein conserved in bacteria Function unknown 148549478 Common - filamentous haemagglutinin family outer membrane protein Pput_4272 42 None None None 148546183 Common - two component transcriptional regulator, winged helix family Pput_0940 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148547975 Common - YheO domain protein Pput_2761 48 COG2964 COG2964, Uncharacterized protein conserved in bacteria Function unknown 148545480 Common - hypothetical protein Pput_0223 23 None None None 148546665 Common - transcriptional regulator, TyrR Pput_1425 169 COG3283 TyrR, Transcriptional regulator of aromatic amino acids metabolism Transcription / Amino acid transport and metabolism 148545650 Common - diguanylate cyclase Pput_0395 171 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 148545697 Common - spermidine/putrescine ABC transporter ATPase subunit Pput_0445 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 148545868 Common - hypothetical protein Pput_0618 39 COG1694 MazG, Predicted pyrophosphatase General function prediction only 148545986 Common - MscS Mechanosensitive ion channel Pput_0740 223 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 148545593 Common - hypothetical protein Pput_0338 9 None None None 148548607 Common - hypothetical protein Pput_3399 6 COG3600 GepA, Uncharacterized phage-associated protein Function unknown 148545386 Common - NLPA lipoprotein Pput_0129 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 148546172 Common - hypothetical protein Pput_0929 1 None None None 148550360 Common - outer membrane porin Pput_5160 7 None None None 148546728 Common - flagellin Pput_1489 122 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 148549725 Common - NAD(P)H dehydrogenase (quinone) Pput_4523 47 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 148548977 Common - 3-isopropylmalate dehydrogenase Pput_3771 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 148547600 Common - Xylose isomerase domain protein TIM barrel Pput_2379 14 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 148546792 Common - glutathione-dependent formaldehyde-activating, GFA Pput_1553 57 COG3791 COG3791, Uncharacterized conserved protein Function unknown 148549829 Common - amino acid permease-associated region Pput_4627 184 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 148545599 Common - serine hydroxymethyltransferase Pput_0344 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 148546622 Common - hypothetical protein Pput_1382 1 None None None 148549546 Common - protein of unknown function DUF962 Pput_4341 24 COG4539 COG4539, Predicted membrane protein Function unknown 148550349 Common - Mg chelatase, subunit ChlI Pput_5149 187 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 148547983 Common - hypothetical protein Pput_2769 34 None None None 148547038 Common - permease for cytosine/purine, uracil, thiamine, allantoin Pput_1803 73 COG1953 FUI1, Cytosine/uracil/thiamine/allantoin permeases Nucleotide transport and metabolism / Coenzyme metabolism 148547944 Common - nitrile hydratase, alpha subunit Pput_2728 21 None None None 148548292 Common - coenzyme PQQ biosynthesis protein A Pput_3082 1 None None None 148549102 Common - orotidine 5'-phosphate decarboxylase Pput_3896 167 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 148549468 Common - transporter-associated region Pput_4262 218 COG4536 CorB, Putative Mg2+ and Co2+ transporter CorB Inorganic ion transport and metabolism 148549661 Common - Fusaric acid resistance protein conserved region Pput_4459 49 COG1289 COG1289, Predicted membrane protein Function unknown 148549954 Common - protein of unknown function DUF181 Pput_4752 4 COG1944 COG1944, Uncharacterized conserved protein Function unknown 148547998 Common - two component transcriptional regulator, winged helix family Pput_2784 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148548979 Common leuD isopropylmalate isomerase small subunit Pput_3773 210 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 148545853 Common - hypothetical protein Pput_0603 22 COG5345 COG5345, Uncharacterized protein conserved in bacteria Function unknown 148548957 Common - multi-sensor hybrid histidine kinase Pput_3751 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148546087 Common - GCN5-related N-acetyltransferase Pput_0843 110 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 148547347 Common - protein of unknown function DUF877 Pput_2126 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 148547517 Common - hypothetical protein Pput_2296 12 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 148549423 Common - phosphoenolpyruvate carboxylase Pput_4217 116 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 148549811 Nonpathogen - hypothetical protein Pput_4609 1 None None None 148545329 Common - glucose-methanol-choline oxidoreductase Pput_0072 93 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 148548936 Common ppnK inorganic polyphosphate/ATP-NAD kinase Pput_3730 227 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 148545659 Common - pyrroloquinoline quinone biosynthesis protein PqqB Pput_0404 36 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 148546802 Common - hypothetical protein Pput_1564 2 None None None 148547392 Common - domain of unknown function DUF1745 Pput_2171 34 COG3287 COG3287, Uncharacterized conserved protein Function unknown 148548866 Common - NAD-glutamate dehydrogenase Pput_3660 77 COG2902 COG2902, NAD-specific glutamate dehydrogenase Amino acid transport and metabolism 148546718 Common - glucose-1-phosphate cytidylyltransferase Pput_1479 180 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 148546297 Common - binding-protein-dependent transport systems inner membrane component Pput_1054 144 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 148549504 Common - glycine cleavage T protein (aminomethyl transferase) Pput_4298 117 COG0354 COG0354, Predicted aminomethyltransferase related to GcvT General function prediction only 148545774 Common - molybdopterin oxidoreductase Fe4S4 region Pput_0522 174 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 148546096 Common - phosphonate ABC transporter, inner membrane subunit Pput_0852 88 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 148550247 Common - phage integrase family protein Pput_5047 36 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 148546836 Common - extracellular solute-binding protein, family 3 Pput_1598 7 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148549158 Common - Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C-like protein Pput_3952 6 COG5424 COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C Coenzyme metabolism 148545456 Common - secretion protein HlyD family protein Pput_0199 118 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 148549693 Common - putative transcriptional regulator, MerR family Pput_4491 56 COG0789 SoxR, Predicted transcriptional regulators Transcription 148547179 Common - binding-protein-dependent transport systems inner membrane component Pput_1954 201 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 148547492 Common - Mg-chelatase subunit ChlD-like protein Pput_2271 36 COG1240 ChlD, Mg-chelatase subunit ChlD Coenzyme metabolism 148545849 Common - 3-dehydroquinate dehydratase Pput_0599 169 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 148547305 Common - flavin reductase domain protein, FMN-binding Pput_2083 102 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 148545964 Common - Polyprenyl synthetase Pput_0718 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 148546817 Common - protein of unknown function DUF989 Pput_1579 38 COG3748 COG3748, Predicted membrane protein Function unknown 148547702 Common - phenylacetate-CoA oxygenase/reductase, PaaK subunit Pput_2485 153 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 148550466 Common - hypothetical protein Pput_5266 6 None None None 148547955 Common - ApbE family lipoprotein Pput_2739 142 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 148545434 Common - acyl-CoA dehydrogenase domain protein Pput_0177 162 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148547674 Common - ATP-dependent metalloprotease FtsH Pput_2457 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 148547595 Common - putative phosphohistidine phosphatase, SixA Pput_2374 4 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 148547534 Common - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family Pput_2313 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 148547723 Common - Ku family containing protein Pput_2506 63 COG1273 COG1273, Uncharacterized conserved protein Function unknown 148547582 Common - hypothetical protein Pput_2361 20 None None None 148549454 Common - hypothetical protein Pput_4248 1 None None None 148550296 Common - hypothetical protein Pput_5096 1 None None None 148546187 Nonpathogen - hypothetical protein Pput_0944 1 None None None 148550302 Common - binding-protein-dependent transport systems inner membrane component Pput_5102 145 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 148545373 Common - sulphate transporter Pput_0116 147 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 148548363 Common - amidase Pput_3153 4 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 148546620 Common - protein of unknown function DUF497 Pput_1380 38 COG2929 COG2929, Uncharacterized protein conserved in bacteria Function unknown 148546470 Nonpathogen - hypothetical protein Pput_1227 5 None None None 148548393 Common - Amidohydrolase 3 Pput_3185 112 COG1574 COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 148549280 Common - membrane protein-like protein Pput_4074 2 COG3308 COG3308, Predicted membrane protein Function unknown 148547526 Common - hypothetical protein Pput_2305 11 None None None 148547840 Common - GPW/gp25 family protein Pput_2624 14 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 148545566 Common - hypothetical protein Pput_0311 13 COG5460 COG5460, Uncharacterized conserved protein Function unknown 148548770 Common - glutathione-dependent formaldehyde-activating, GFA Pput_3563 67 COG3791 COG3791, Uncharacterized conserved protein Function unknown 148547804 Common - Non-specific protein-tyrosine kinase Pput_2587 131 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 148549109 Common - ABC transporter related Pput_3903 249 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 148546056 Common - protein of unknown function DUF1631 Pput_0811 21 None None None 148549815 Common - hypothetical protein Pput_4613 32 COG3440 COG3440, Predicted restriction endonuclease Defense mechanisms 148547853 Common - major facilitator superfamily MFS_1 Pput_2637 67 None None None 148550007 Common - hypothetical protein Pput_4805 1 None None None 148550271 Common - peptidase S45, penicillin amidase Pput_5071 78 COG2366 COG2366, Protein related to penicillin acylase General function prediction only 148548401 Common - hypothetical protein Pput_3193 6 None None None 148548970 Common - FolC bifunctional protein Pput_3764 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 148547146 Common - hypothetical protein Pput_1919 1 None None None 148546783 Common - cytochrome c-type biogenesis protein CcmE Pput_1544 94 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 148547178 Common - binding-protein-dependent transport systems inner membrane component Pput_1953 221 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 148548257 Nonpathogen - hypothetical protein Pput_3047 1 None None None 148549941 Common - hypothetical protein Pput_4739 1 None None None 148546679 Common - hypothetical protein Pput_1439 1 None None None 148547610 Common - transcriptional regulator, LysR family Pput_2389 107 COG0583 LysR, Transcriptional regulator Transcription 148550486 Common - two component transcriptional regulator, winged helix family Pput_5286 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148545973 Common - hypothetical protein Pput_0727 6 None None None 148547851 Common - ImpA domain protein Pput_2635 32 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 148546242 Common - Mammalian cell entry related domain protein Pput_0999 98 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 148546997 Common - hypothetical protein Pput_1759 22 None None None 148548138 Common - hypothetical protein Pput_2928 10 None None None 148548421 Common - GCN5-related N-acetyltransferase Pput_3213 16 COG0456 RimI, Acetyltransferases General function prediction only 148545685 Common apaH diadenosine tetraphosphatase Pput_0433 87 None None None 148548541 Common - fimbrial biogenesis outer membrane usher protein Pput_3333 39 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 148546318 Common - multicopper oxidase, type 3 Pput_1075 128 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 148550232 Common - DNA-directed DNA polymerase Pput_5030 177 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 148545814 Common - 3,4-dihydroxy-2-butanone 4-phosphate synthase Pput_0564 223 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 148548548 Common - response regulator receiver protein Pput_3340 86 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148549900 Common - phosphoribosylamine--glycine ligase Pput_4698 232 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 148546051 Common - hypothetical protein Pput_0805 4 None None None 148546224 Common - hypothetical protein Pput_0981 62 COG3028 COG3028, Uncharacterized protein conserved in bacteria Function unknown 148547196 Common - hypothetical protein Pput_1971 5 None None None 148546061 Common - phosphoenolpyruvate-protein phosphotransferase Pput_0816 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 148549228 Common - major facilitator superfamily MFS_1 Pput_4022 185 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148550498 Common - F0F1 ATP synthase subunit delta Pput_5298 185 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 148547183 Common - Alpha/beta hydrolase fold-3 domain protein Pput_1958 136 COG0657 Aes, Esterase/lipase Lipid metabolism 148546693 Common - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) Pput_1453 153 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 148549392 Common rpsB 30S ribosomal protein S2 Pput_4186 228 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 148546154 Common - hypothetical protein Pput_0911 11 None None None 148548760 Common - NADH dehydrogenase (quinone) Pput_3553 161 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 148550122 Common - glutamine synthetase, type I Pput_4920 227 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 148548641 Common - putative AcnD-accessory protein PrpF Pput_3433 55 COG2828 COG2828, Uncharacterized protein conserved in bacteria Function unknown 148545610 Common - phospholipid/glycerol acyltransferase Pput_0355 29 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 148548425 Common - diguanylate cyclase Pput_3217 185 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 148549697 Common - HopJ type III effector protein Pput_4495 15 None None None 148546514 Common - putative transcriptional regulator Pput_1271 36 COG3636 COG3636, Predicted transcriptional regulator Transcription 148548965 Common - oxidoreductase Pput_3759 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148547387 Common - phosphate ABC transporter, inner membrane subunit PstA Pput_2166 224 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 148548027 Common ampC beta-lactamase Pput_2813 66 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 148546251 Common - GntR domain protein Pput_1008 130 COG2186 FadR, Transcriptional regulators Transcription 148547726 Common - methyltransferase small Pput_2509 133 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 148546721 Common - glycosyl transferase, family 2 Pput_1482 93 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 148546074 Common - type I secretion outer membrane protein, TolC family Pput_0829 90 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148549516 Nonpathogen - hypothetical protein Pput_4310 1 None None None 148546911 Common - Propeptide, PepSY amd peptidase M4 Pput_1673 53 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 148547507 Common - SurA N-terminal domain Pput_2286 17 None None None 148547800 Common - polysaccharide biosynthesis protein Pput_2583 20 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 148547265 Common - aldehyde dehydrogenase Pput_2043 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148549571 Common - pyridoxamine 5'-phosphate oxidase-related, FMN-binding Pput_4366 41 COG0748 HugZ, Putative heme iron utilization protein Inorganic ion transport and metabolism 148545710 Common - OsmC family protein Pput_0458 86 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 148545715 Common - 2-nitropropane dioxygenase, NPD Pput_0463 91 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 148547693 Common - enoyl-CoA hydratase Pput_2476 179 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 148547073 Common - DsrH family protein Pput_1838 2 COG2168 DsrH, Uncharacterized conserved protein involved in oxidation of intracellular sulfur Inorganic ion transport and metabolism 148549568 Common groEL chaperonin GroEL Pput_4363 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 148546342 Common - Membrane carboxypeptidase (penicillin-binding protein)-like protein Pput_1099 15 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 148549197 Common - MscS Mechanosensitive ion channel Pput_3991 118 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 148549618 Common - hydrolase of the alpha/beta superfamily-like protein Pput_4414 77 COG2945 COG2945, Predicted hydrolase of the alpha/beta superfamily General function prediction only 148548774 Common - hypothetical protein Pput_3567 1 COG4907 COG4907, Predicted membrane protein Function unknown 148546862 Common - peptide synthase Pput_1624 222 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 148549705 Common - carbon starvation protein CstA Pput_4503 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 148549886 Common - iojap-like protein Pput_4684 201 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 148545429 Common - Acetyl-CoA hydrolase Pput_0172 96 COG0427 ACH1, Acetyl-CoA hydrolase Energy production and conversion 148549142 Common - polysaccharide biosynthesis protein CapD Pput_3936 160 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 148549830 Common - d-galactonate transporter Pput_4628 170 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148547688 Common - putative transcriptional regulator, Crp/Fnr family Pput_2471 142 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 148549750 Common - hypothetical protein Pput_4548 57 COG2187 COG2187, Uncharacterized protein conserved in bacteria Function unknown 148546984 Common - NADH dehydrogenase subunit A Pput_1746 163 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 148549140 Common - dTDP-4-dehydrorhamnose reductase Pput_3934 165 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 148546044 Common - OmpA/MotB domain protein Pput_0798 159 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 148547858 Nonpathogen - hypothetical protein Pput_2642 1 None None None 148550188 Common - peptidase M16 domain protein Pput_4986 167 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 148545422 Common - citrate/H+ symporter, CitMHS family Pput_0165 63 COG2851 CitM, H+/citrate symporter Energy production and conversion 148547186 Common - MbtH domain protein Pput_1961 31 COG3251 COG3251, Uncharacterized protein conserved in bacteria Function unknown 148546588 Common - hypothetical protein Pput_1346 16 None None None 148546809 Common - Hydroxypyruvate isomerase Pput_1571 85 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 148549390 Common pyrH uridylate kinase Pput_4184 236 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 148549167 Common - protein of unknown function DUF6, transmembrane Pput_3961 25 COG2510 COG2510, Predicted membrane protein Function unknown 148550284 Common - Ornithine carbamoyltransferase Pput_5084 183 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 148546761 Common - transcriptional regulator, GntR family Pput_1522 139 COG1802 GntR, Transcriptional regulators Transcription 148545541 Common - Glutamate synthase (NADPH) Pput_0285 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 148546349 Common - GlpM family protein Pput_1106 14 COG3136 GlpM, Uncharacterized membrane protein required for alginate biosynthesis General function prediction only 148549006 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase Pput_3800 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148550227 Common - L-carnitine dehydratase/bile acid-inducible protein F Pput_5025 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 148548458 Common - transcriptional regulator, LysR family Pput_3250 163 COG0583 LysR, Transcriptional regulator Transcription 148545838 Common - protein of unknown function DUF1375 Pput_0588 1 COG5645 COG5645, Predicted periplasmic lipoprotein General function prediction only 148546462 Common - hypothetical protein Pput_1219 1 None None None 148547543 Common - hypothetical protein Pput_2322 1 None None None 148545601 Common - sarcosine oxidase, delta subunit family Pput_0346 33 COG4311 SoxD, Sarcosine oxidase delta subunit Amino acid transport and metabolism 148547380 Common - Hydratase/decarboxylase Pput_2159 40 COG3971 COG3971, 2-keto-4-pentenoate hydratase Secondary metabolites biosynthesis, transport, and catabolism 148547397 Common - FAD dependent oxidoreductase Pput_2176 123 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148546629 Common - transcriptional regulator, LysR family Pput_1389 171 COG0583 LysR, Transcriptional regulator Transcription 148546680 Common - succinylglutamate desuccinylase Pput_1440 24 COG2988 COG2988, Succinylglutamate desuccinylase Amino acid transport and metabolism 148548893 Common - hypothetical protein Pput_3687 8 None None None 148548716 Common - transcriptional regulator, XRE family Pput_3508 81 COG1396 HipB, Predicted transcriptional regulators Transcription 148549231 Common - integral membrane sensor hybrid histidine kinase Pput_4025 222 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 148550311 Common - 5-formyltetrahydrofolate cyclo-ligase Pput_5111 163 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 148546545 Common - hypothetical protein Pput_1302 2 COG3975 COG3975, Predicted protease with the C-terminal PDZ domain General function prediction only 148546874 Common - GAD-like protein Pput_1636 10 COG5620 COG5620, Uncharacterized conserved protein Function unknown 148550219 Common - hypothetical protein Pput_5017 2 None None None 148546396 Common - SEC-C motif domain protein Pput_1153 66 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 148548938 Common - cytochrome B561 Pput_3732 72 COG3038 CybB, Cytochrome B561 Energy production and conversion 148546422 Common - ATP-dependent helicase HepA Pput_1179 117 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 148550511 Common rnpA ribonuclease P Pput_5311 73 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 148546447 Common - SMP-30/Gluconolaconase/LRE domain protein Pput_1204 81 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 148546365 Common - glutaredoxin-like protein Pput_1122 126 COG0278 COG0278, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 148548917 Common - protein of unknown function DUF58 Pput_3711 91 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 148545790 Common - hypothetical protein Pput_0540 21 COG3495 COG3495, Uncharacterized protein conserved in bacteria Function unknown 148546119 Common hscB co-chaperone HscB Pput_0875 55 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 148546281 Common - arginine deiminase Pput_1038 56 COG2235 ArcA, Arginine deiminase Amino acid transport and metabolism 148547555 Common - Tetratricopeptide TPR_2 repeat protein Pput_2334 32 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 148548288 Common - hypothetical protein Pput_3078 3 None None None 148546531 Common - transcriptional regulator, LysR family Pput_1288 180 COG0583 LysR, Transcriptional regulator Transcription 148550094 Common - Sec-independent protein translocase, TatC subunit Pput_4892 204 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 148549078 Common - sulfatase Pput_3872 60 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 148547275 Common - muconate and chloromuconate cycloisomerase Pput_2053 141 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 148547063 Common aat leucyl/phenylalanyl-tRNA--protein transferase Pput_1828 134 COG2360 Aat, Leu/Phe-tRNA-protein transferase Posttranslational modification, protein turnover, chaperones 148549898 Common fis DNA-binding protein Fis Pput_4696 94 COG2901 Fis, Factor for inversion stimulation Fis, transcriptional activator Transcription / DNA replication, recombination, and repair 148547814 Common - transposase, IS111A/IS1328/IS1533 Pput_2597 59 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 148549348 Nonpathogen - hypothetical protein Pput_4142 1 None None None 148549418 Common - PEP phosphonomutase and related enzymes-like protein Pput_4212 83 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 148549593 Common - cell division protein FtsW Pput_4388 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 148549153 Common - DNA gyrase subunit A Pput_3947 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 148550154 Common aroK shikimate kinase Pput_4952 200 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 148549255 Common - NLP/P60 protein Pput_4049 132 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 148546302 Common - DNA-binding transcriptional regulator HexR Pput_1059 97 COG1737 RpiR, Transcriptional regulators Transcription 148546921 Common - RND efflux system, outer membrane lipoprotein, NodT family Pput_1683 109 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148548354 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Pput_3144 35 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 148546617 Common - MscS Mechanosensitive ion channel Pput_1377 59 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 148547564 Common - two component, sigma54 specific, transcriptional regulator, Fis family Pput_2343 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148546429 Common - secretion protein HlyD family protein Pput_1186 130 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 148549433 Common - peptide chain release factor 2 Pput_4227 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 148550471 Common - hypothetical protein Pput_5271 9 None None None 148546489 Common ruvB Holliday junction DNA helicase B Pput_1246 213 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 148550260 Common - fumarylacetoacetate (FAA) hydrolase Pput_5060 179 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 148548111 Common - FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pput_2899 234 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 148549075 Common - hypothetical protein Pput_3869 12 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 148548910 Common - AMP-dependent synthetase and ligase Pput_3704 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148548722 Common - putative monovalent cation/H+ antiporter subunit F Pput_3514 65 COG2212 MnhF, Multisubunit Na+/H+ antiporter, MnhF subunit Inorganic ion transport and metabolism 148546706 Common - flagellar basal body FlaE domain protein Pput_1467 126 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 148549874 Common - protein of unknown function DUF331 Pput_4672 1 COG3036 COG3036, Uncharacterized protein conserved in bacteria Function unknown 148549114 Common - 2-dehydro-3-deoxyphosphooctonate aldolase Pput_3908 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 148550389 Common - protein of unknown function DUF861, cupin_3 Pput_5189 33 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 148546538 Common - hypothetical protein Pput_1295 1 None None None 148547558 Common - efflux transporter, RND family, MFP subunit Pput_2337 154 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148550436 Common - binding-protein-dependent transport systems inner membrane component Pput_5236 222 COG4590 COG4590, ABC-type uncharacterized transport system, permease component General function prediction only 148546751 Common fliQ flagellar biosynthesis protein FliQ Pput_1512 85 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 148548141 Common - hypothetical protein Pput_2931 21 None None None 148549891 Common - peptidase S16, lon domain protein Pput_4689 53 COG2802 COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease General function prediction only 148547082 Common - major facilitator superfamily MFS_1 Pput_1848 179 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148546480 Common - hypothetical protein Pput_1237 21 COG2900 SlyX, Uncharacterized protein conserved in bacteria Function unknown 148547716 Common - metallothionein, family 14 Pput_2499 6 None None None 148545664 Common - Serine acetyltransferase-like protein Pput_0409 6 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 148547433 Common - cell wall hydrolase, SleB Pput_2212 39 COG3773 SleB, Cell wall hydrolyses involved in spore germination Cell envelope biogenesis, outer membrane 148546660 Common - hypothetical protein Pput_1420 37 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148550083 Common - poly(hydroxyalkanoate) granule-associated protein Pput_4881 16 COG3937 COG3937, Uncharacterized conserved protein Function unknown 148548901 Common - transcriptional regulator, LysR family Pput_3695 106 COG0583 LysR, Transcriptional regulator Transcription 148548999 Common - hydrolase, TatD family Pput_3793 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 148547121 Common - transcriptional regulator, MarR family Pput_1891 85 COG1846 MarR, Transcriptional regulators Transcription 148548769 Common - short-chain dehydrogenase/reductase SDR Pput_3562 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148550059 Common - hypothetical protein Pput_4857 1 None None None 148545945 Common - aldehyde dehydrogenase Pput_0699 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148549653 Common - short chain dehydrogenase Pput_4451 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 148545798 Common - hypothetical protein Pput_0548 176 COG1327 COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Transcription 148549607 Common - ClpXP protease specificity-enhancing factor Pput_4403 65 COG2969 SspB, Stringent starvation protein B General function prediction only 148548016 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Pput_2802 136 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148545333 Common glyS glycyl-tRNA synthetase subunit beta Pput_0076 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 148548594 Common - hypothetical protein Pput_3386 1 None None None 148548853 Common - response regulator receiver and ANTAR domain protein Pput_3647 114 COG3707 AmiR, Response regulator with putative antiterminator output domain Signal transduction mechanisms 148550421 Common - hypothetical protein Pput_5221 7 None None None 148546334 Common - general secretion pathway protein H Pput_1091 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 148546644 Common - potassium uptake protein, TrkH family Pput_1404 159 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 148549223 Common - methionine aminopeptidase, type I Pput_4017 249 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 148549808 Common - hypothetical protein Pput_4606 16 None None None 148547914 Common - short-chain dehydrogenase/reductase SDR Pput_2698 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148545304 Common - glycosyl transferase, family 39 Pput_0047 63 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 148549062 Common - elongation factor P Pput_3856 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 148547647 Common - short chain dehydrogenase Pput_2427 235 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 148545508 Common - aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein Pput_0252 112 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 148549672 Common - hypothetical protein Pput_4470 12 None None None 148549573 Common - Methylated-DNA-(protein)-cysteine S-methyltransferase, DNA binding Pput_4368 24 COG3695 COG3695, Predicted methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 148546218 Common - Rod shape-determining protein MreD Pput_0975 64 COG2891 MreD, Cell shape-determining protein Cell envelope biogenesis, outer membrane 148545935 Nonpathogen - hypothetical protein Pput_0689 1 None None None 148549325 Nonpathogen - hypothetical protein Pput_4119 1 None None None 148548992 Common - excinuclease ABC subunit B Pput_3786 225 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 148549086 Common - chorismate synthase Pput_3880 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 148547469 Common - helix-turn-helix- domain containing protein, AraC type Pput_2248 129 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148548408 Common - Protocatechuate 4,5-dioxygenase Pput_3200 30 COG3384 COG3384, Uncharacterized conserved protein Function unknown 148547016 Common - hypothetical protein Pput_1780 8 None None None 148546810 Common - glyoxylate carboligase Pput_1572 221 COG3960 COG3960, Glyoxylate carboligase General function prediction only 148550107 Common - amino acid permease-associated region Pput_4905 180 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 148547629 Common - putative 3-hydroxyphenylpropionic transporter MhpT Pput_2408 113 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148548176 Common - NAD(P)H dehydrogenase (quinone) Pput_2966 77 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 148545476 Common - Lysine exporter protein (LYSE/YGGA) Pput_0219 106 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148547889 Common - DSBA oxidoreductase Pput_2673 27 COG2761 FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 148546394 Common - major facilitator superfamily MFS_1 Pput_1151 50 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148547253 Common - Enoyl-CoA hydratase/isomerase Pput_2031 131 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 148546350 Common - two component, sigma54 specific, transcriptional regulator, Fis family Pput_1107 218 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148546566 Common aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein Pput_1324 29 COG4579 COG4579, Isocitrate dehydrogenase kinase/phosphatase Signal transduction mechanisms 148547924 Common - protein of unknown function UPF0157 Pput_2708 40 COG2320 GrpB, Uncharacterized conserved protein Function unknown 148547811 Common - 3-oxoacid CoA-transferase, A subunit Pput_2594 100 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 148547919 Common - short-chain dehydrogenase/reductase SDR Pput_2703 234 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 148549799 Common - SmpA/OmlA domain protein Pput_4597 64 COG2913 SmpA, Small protein A (tmRNA-binding) Translation, ribosomal structure and biogenesis 148546923 Common - efflux transporter, RND family, MFP subunit Pput_1685 171 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148546610 Common - Transcriptional regulator IclR-like protein Pput_1370 76 COG1414 IclR, Transcriptional regulator Transcription 148546080 Common - Cytochrome o ubiquinol oxidase, subunit I Pput_0836 165 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 148549339 Nonpathogen - hypothetical protein Pput_4133 1 None None None 148548327 Common - Shikimate dehydrogenase substrate binding, N-terminal domain protein Pput_3117 180 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 148547622 Common - aldehyde dehydrogenase Pput_2401 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148549054 Common - Spermidine synthase-like protein Pput_3848 33 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 148548510 Common - DNA polymerase II Pput_3302 65 COG0417 PolB, DNA polymerase elongation subunit (family B) DNA replication, recombination, and repair 148549275 Common - hypothetical protein Pput_4069 1 None None None 148548642 Common - aconitate hydratase Pput_3434 223 COG1048 AcnA, Aconitase A Energy production and conversion 148546687 Common - amino acid permease-associated region Pput_1447 164 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 148546204 Common - protein of unknown function DUF479 Pput_0961 33 COG3124 COG3124, Uncharacterized protein conserved in bacteria Function unknown 148547499 Common - transcriptional regulator, LysR family Pput_2278 109 COG0583 LysR, Transcriptional regulator Transcription 148548613 Nonpathogen - protein of unknown function DUF551 Pput_3405 1 None None None 148545334 Common glyQ glycyl-tRNA synthetase subunit alpha Pput_0077 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 148548415 Common - GTP cyclohydrolase I Pput_3207 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 148545748 Common rpsQ 30S ribosomal protein S17 Pput_0496 234 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 148549770 Common - hypothetical protein Pput_4568 26 COG3662 COG3662, Uncharacterized protein conserved in bacteria Function unknown 148549716 Common - major facilitator superfamily MFS_1 Pput_4514 139 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148546975 Common - NADH dehydrogenase subunit K Pput_1737 165 COG0713 NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) Energy production and conversion 148548125 Common - Cobyrinic acid a,c-diamide synthase Pput_2914 200 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 148548061 Common - Urease accessory protein UreD Pput_2847 74 COG0829 UreH, Urease accessory protein UreH Posttranslational modification, protein turnover, chaperones 148549923 Common - inner-membrane translocator Pput_4721 143 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 148548491 Common - Cobyrinic acid a,c-diamide synthase Pput_3283 199 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 148545891 Common rpsT 30S ribosomal protein S20 Pput_0641 135 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 148550066 Common - putative CheW protein Pput_4864 85 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 148550117 Common - glycogen/starch/alpha-glucan phosphorylase Pput_4915 141 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 148546006 Common hemA glutamyl-tRNA reductase Pput_0760 182 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 148546191 Common - periplasmic lipoprotein-like protein Pput_0948 27 COG3489 COG3489, Predicted periplasmic lipoprotein General function prediction only 148549558 Common - glycosyl transferase, group 1 Pput_4353 195 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 148550267 Common - hypothetical protein Pput_5067 4 None None None 148548259 Common - major facilitator superfamily MFS_1 Pput_3049 130 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148549355 Nonpathogen - hypothetical protein Pput_4149 1 None None None 148549848 Common - protein of unknown function UPF0259 Pput_4646 2 None None None 148550461 Common - import inner membrane translocase, subunit Tim44 Pput_5261 31 COG4395 COG4395, Uncharacterized protein conserved in bacteria Function unknown 148548896 Common - acetyl-CoA acetyltransferase Pput_3690 167 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 148547791 Common - glycosyl transferase, family 2 Pput_2574 62 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 148550162 Common - ribosomal protein L31 Pput_4960 204 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 148545702 Common - phosphoglycolate phosphatase Pput_0450 208 COG0546 Gph, Predicted phosphatases General function prediction only 148549082 Common - Ankyrin Pput_3876 106 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 148549131 Common - ABC transporter related Pput_3925 249 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 148545366 Common - HAD-superfamily hydrolase, subfamily IA, variant 1 Pput_0109 163 COG0546 Gph, Predicted phosphatases General function prediction only 148545709 Common - cAMP-regulatory protein Pput_0457 151 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 148548850 Common - ribosome modulation factor Pput_3644 21 COG3130 Rmf, Ribosome modulation factor Translation, ribosomal structure and biogenesis 148546256 Common - histone family protein DNA-binding protein Pput_1013 137 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 148545732 Common rpoB DNA-directed RNA polymerase subunit beta Pput_0480 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 148547656 Common - pyruvate decarboxylase Pput_2436 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 148549126 Common - 8-amino-7-oxononanoate synthase Pput_3920 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 148549303 Nonpathogen - hypothetical protein Pput_4097 1 None None None 148550050 Common - thioesterase superfamily protein Pput_4848 47 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 148550373 Common - diguanylate cyclase/phosphodiesterase Pput_5173 176 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148545848 Common - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit Pput_0598 174 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 148548906 Common - protein of unknown function DUF1302 Pput_3700 18 None None None 148549385 Common - putative membrane-associated zinc metalloprotease Pput_4179 209 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 148546999 Common - phosphate transporter Pput_1761 159 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 148545444 Nonpathogen - hypothetical protein Pput_0187 1 None None None 148549440 Common - methyl-accepting chemotaxis sensory transducer Pput_4234 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148547439 Common - Na+/H+ antiporter NhaC Pput_2218 29 COG2056 COG2056, Predicted permease General function prediction only 148549021 Common - Biopolymer transport protein ExbD/TolR Pput_3815 34 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 148547464 Common - hypothetical protein Pput_2243 33 COG3257 GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization General function prediction only 148548218 Common - UspA domain protein Pput_3008 37 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 148547518 Common - curli assembly protein CsgE Pput_2297 8 None None None 148550214 Common - heavy metal translocating P-type ATPase Pput_5012 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 148550182 Common mtgA monofunctional biosynthetic peptidoglycan transglycosylase Pput_4980 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 148550037 Common - hypothetical protein Pput_4835 1 None None None 148546498 Common - exsB protein Pput_1255 178 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 148550431 Common - peptidase M23B Pput_5231 184 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 148550324 Common - thioredoxin Pput_5124 232 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 148545757 Common rpmD 50S ribosomal protein L30 Pput_0505 95 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 148545268 Common - hypothetical protein Pput_0009 4 None None None 148547450 Common - PAS/PAC sensor hybrid histidine kinase Pput_2229 198 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 148545589 Common - Electron transfer flavoprotein, alpha/beta-subunit-like protein Pput_0334 26 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 148548846 Common - hypothetical protein Pput_3640 28 COG3171 COG3171, Uncharacterized protein conserved in bacteria Function unknown 148550477 Common - major facilitator superfamily MFS_1 Pput_5277 131 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148549073 Common - Mg2+ transporter protein, CorA family protein Pput_3867 162 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 148548950 Common - Antibiotic biosynthesis monooxygenase Pput_3744 29 COG1359 COG1359, Uncharacterized conserved protein Function unknown 148550257 Common - ribose-5-phosphate isomerase A Pput_5057 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 148545750 Common rplX 50S ribosomal protein L24 Pput_0498 212 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 148545951 Common - putative ABC transporter ATP-binding protein Pput_0705 248 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 148545802 Common ribH riboflavin synthase subunit beta Pput_0552 230 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 148547835 Common - Rhs element Vgr protein Pput_2618 64 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 148547254 Common - transcriptional regulator, TetR family Pput_2032 58 COG1309 AcrR, Transcriptional regulator Transcription 148550250 Common - protein of unknown function DUF81 Pput_5050 126 COG0730 COG0730, Predicted permeases General function prediction only 148549602 Common - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase Pput_4398 208 COG0313 COG0313, Predicted methyltransferases General function prediction only 148548482 Common - GCN5-related N-acetyltransferase Pput_3274 32 COG0456 RimI, Acetyltransferases General function prediction only 148548562 Nonpathogen - hypothetical protein Pput_3354 1 None None None 148546237 Common - protein of unknown function DUF1239 Pput_0994 10 COG3117 COG3117, Uncharacterized protein conserved in bacteria Function unknown 148547793 Common - protein of unknown function DUF535 Pput_2576 21 COG2990 VirK, Uncharacterized protein conserved in bacteria Function unknown 148549365 Common ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Pput_4159 189 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 148545673 Common - RNA polymerase sigma factor RpoD Pput_0421 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 148549689 Common - transcriptional regulator, LysR family Pput_4487 189 COG0583 LysR, Transcriptional regulator Transcription 148545752 Common rpsN 30S ribosomal protein S14 Pput_0500 203 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 148545640 Common - predicted kinase Pput_0385 51 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 148546597 Common - transposase, IS4 family protein Pput_1356 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 148547283 Common - catalase/peroxidase HPI Pput_2061 98 COG0376 KatG, Catalase (peroxidase I) Inorganic ion transport and metabolism 148548786 Common - hypothetical protein Pput_3580 10 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 148547575 Common - cobalt transporter, subunit CbtA Pput_2354 13 COG5446 COG5446, Predicted integral membrane protein Function unknown 148546543 Common - nitroreductase Pput_1300 68 COG0778 NfnB, Nitroreductase Energy production and conversion 148548585 Nonpathogen - hypothetical protein Pput_3377 1 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 148547207 Common - DSBA oxidoreductase Pput_1985 81 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 148546310 Common xseA exodeoxyribonuclease VII large subunit Pput_1067 203 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 148548740 Common - peptidase U32 Pput_3532 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 148547775 Common - UspA domain protein Pput_2558 39 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 148547991 Common - proline/glycine betaine transporter Pput_2777 150 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148549353 Nonpathogen - hypothetical protein Pput_4147 1 None None None 148547875 Common - metallophosphoesterase Pput_2659 63 COG3855 Fbp, Uncharacterized protein conserved in bacteria Carbohydrate transport and metabolism 148547620 Common - transcriptional regulator, MarR family Pput_2399 99 COG1846 MarR, Transcriptional regulators Transcription 148546368 Common - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Pput_1125 222 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 148549540 Common - drug resistance transporter, EmrB/QacA subfamily Pput_4335 231 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148549548 Common - 3-oxoadipate enol-lactonase Pput_4343 169 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148546193 Common - hypothetical protein Pput_0950 2 None None None 148550328 Common - Sterol desaturase-like protein Pput_5128 74 COG3000 ERG3, Sterol desaturase Lipid metabolism 148545273 Common - hypothetical protein Pput_0014 11 COG3667 PcoB, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 148550204 Common - dihydroxy-acid dehydratase Pput_5002 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 148548230 Common - hypothetical protein Pput_3020 3 None None None 148547069 Common - uroporphyrin-III C-methyltransferase Pput_1834 203 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 148547244 Common - Peptidoglycan glycosyltransferase Pput_2022 204 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 148549518 Common - hypothetical protein Pput_4312 5 None None None 148546963 Common - Lysine decarboxylase Pput_1725 87 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 148547531 Common - hypothetical protein Pput_2310 5 COG3391 COG3391, Uncharacterized conserved protein Function unknown 148549884 Common - Peptidoglycan glycosyltransferase Pput_4682 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 148545764 Common - DNA-directed RNA polymerase subunit alpha Pput_0512 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 148549497 Common - protease Do Pput_4291 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 148550318 Common - flagellar basal body-associated protein FliL-like protein Pput_5118 19 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 148548824 Common - molybdenum cofactor synthesis domain Pput_3618 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 148546527 Common - dihydrodipicolinate synthetase Pput_1284 138 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 148548538 Common - transcriptional regulator, AraC family Pput_3330 89 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148545612 Common - DNA-binding response regulator CreB Pput_0357 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148548338 Common - putative aminotransferase Pput_3128 236 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 148548528 Common metH B12-dependent methionine synthase Pput_3320 179 COG1410 MetH, Methionine synthase I, cobalamin-binding domain Amino acid transport and metabolism 148547456 Common - putative transcriptional regulator, MerR family Pput_2235 103 COG0789 SoxR, Predicted transcriptional regulators Transcription 148546520 Common - Lysine exporter protein (LYSE/YGGA) Pput_1277 81 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148546930 Common - amidohydrolase 2 Pput_1692 9 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 148546803 Common - sulfate ABC transporter, periplasmic sulfate-binding protein Pput_1565 89 COG1613 Sbp, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 148550209 Common - GTP-binding protein, HSR1-related Pput_5007 18 COG1160 COG1160, Predicted GTPases General function prediction only 148547746 Common codB cytosine permease Pput_2529 63 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 148548752 Common - anti-FecI sigma factor, FecR Pput_3545 75 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 148546132 Common - putative aminotransferase Pput_0888 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 148547230 Common - 3-hydroxybutyryl-CoA dehydrogenase Pput_2008 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 148550114 Common - hypothetical protein Pput_4912 7 COG2913 SmpA, Small protein A (tmRNA-binding) Translation, ribosomal structure and biogenesis 148546032 Common - protein of unknown function DUF159 Pput_0786 101 COG2135 COG2135, Uncharacterized conserved protein Function unknown 148548286 Common - hypothetical protein Pput_3076 5 None None None 148546646 Common - integral membrane sensor signal transduction histidine kinase Pput_1406 215 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148545919 Common - hypothetical protein Pput_0669 5 None None None 148549400 Common - Tetrahydrodipicolinate N-succinyltransferase-like protein Pput_4194 52 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 148546313 Common - hypothetical protein Pput_1070 1 None None None 148549310 Common - hypothetical protein Pput_4104 10 None None None 148546533 Common - protein of unknown function UPF0187 Pput_1290 56 COG3781 COG3781, Predicted membrane protein Function unknown 148549903 Nonpathogen - hypothetical protein Pput_4701 1 None None None 148547485 Common - branched-chain amino acid aminotransferase Pput_2264 200 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 148548664 Common - DoxX family protein Pput_3456 28 COG2259 COG2259, Predicted membrane protein Function unknown 148549403 Common - UBA/THIF-type NAD/FAD binding protein Pput_4197 144 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 148548701 Common - transcriptional regulator, XRE family Pput_3493 62 COG1396 HipB, Predicted transcriptional regulators Transcription 148546487 Common ruvC Holliday junction resolvase Pput_1244 195 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 148550428 Common - two component transcriptional regulator, winged helix family Pput_5228 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148549937 Common - AsmA family protein Pput_4735 54 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 148546903 Common kgd alpha-ketoglutarate decarboxylase Pput_1665 147 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 148548814 Common - UspA domain protein Pput_3608 112 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 148547371 Common - magnesium-translocating P-type ATPase Pput_2150 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 148549643 Common - hypothetical protein Pput_4441 3 None None None 148549377 Common dnaE DNA polymerase III subunit alpha Pput_4171 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 148548704 Common - TonB-dependent siderophore receptor Pput_3496 130 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 148548347 Common - hypothetical protein Pput_3137 63 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 148549181 Common - hypothetical protein Pput_3975 1 None None None 148545818 Common - two component transcriptional regulator, winged helix family Pput_0568 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148548578 Common - Ig domain protein, group 2 domain protein Pput_3370 25 COG5492 COG5492, Bacterial surface proteins containing Ig-like domains Cell motility and secretion 148547130 Common - transcriptional regulator, LysR family Pput_1900 187 COG0583 LysR, Transcriptional regulator Transcription 148547017 Common - hypothetical protein Pput_1782 7 None None None 148547627 Common - sulfatase Pput_2406 86 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 148546023 Common - hypothetical protein Pput_0777 1 None None None 148549429 Common - protein of unknown function DUF1704 Pput_4223 16 COG3930 COG3930, Uncharacterized protein conserved in bacteria Function unknown 148547653 Common - aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding Pput_2433 116 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 148545502 Common - binding-protein-dependent transport systems inner membrane component Pput_0246 199 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 148546113 Common - RNA methyltransferase, TrmH family, group 1 Pput_0869 157 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 148550265 Common - protein of unknown function DUF523 Pput_5065 70 COG1683 COG1683, Uncharacterized conserved protein Function unknown 148545283 Common - Putative protein-S-isoprenylcysteine methyltransferase-like protein Pput_0025 35 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 148550173 Common - methionine biosynthesis protein MetW Pput_4971 70 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 148548346 Common - hypothetical protein Pput_3136 5 None None None 148548631 Nonpathogen - hypothetical protein Pput_3423 1 None None None 148545410 Nonpathogen - protein of unknown function DUF1328 Pput_0153 1 None None None 148548015 Common - putative transmembrane anti-sigma factor Pput_2801 22 COG5662 COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) Transcription 148549319 Common - phage portal protein, HK97 family Pput_4113 67 COG4695 COG4695, Phage-related protein Function unknown 148546953 Common - ABC transporter related Pput_1715 249 COG4172 COG4172, ABC-type uncharacterized transport system, duplicated ATPase component General function prediction only 148547027 Common - malto-oligosyltrehalose trehalohydrolase Pput_1792 156 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 148545484 Common gabD succinate-semialdehyde dehydrogenase I Pput_0228 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148547115 Common - GntR domain protein Pput_1885 135 COG2186 FadR, Transcriptional regulators Transcription 148548468 Common - aminotransferase, class V Pput_3260 238 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 148548531 Common - periplasmic binding protein/LacI transcriptional regulator Pput_3323 51 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 148550212 Common - ABC transporter related Pput_5010 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 148549216 Common - major facilitator superfamily MFS_1 Pput_4010 201 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148546553 Common - major facilitator superfamily MFS_1 Pput_1311 219 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148549736 Common - diguanylate cyclase Pput_4534 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 148548034 Common - NADH:flavin oxidoreductase/NADH oxidase Pput_2820 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 148549253 Common - cob(I)yrinic acid a,c-diamide adenosyltransferase Pput_4047 142 COG2109 BtuR, ATP:corrinoid adenosyltransferase Coenzyme metabolism 148550494 Common atpC F0F1 ATP synthase subunit epsilon Pput_5294 167 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 148546022 Common - hypothetical protein Pput_0776 20 None None None 148549100 Common - short chain dehydrogenase Pput_3894 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148545606 Common - hypothetical protein Pput_0351 12 None None None 148547061 Common infA translation initiation factor IF-1 Pput_1826 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 148545402 Common - Endonuclease/exonuclease/phosphatase Pput_0145 34 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 148545588 Common - Electron transfer flavoprotein, alpha subunit-like protein Pput_0333 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 148549422 Common adk adenylate kinase Pput_4216 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 148546299 Common - ABC transporter related Pput_1056 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 148549775 Common - polynucleotide phosphorylase/polyadenylase Pput_4573 245 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 148549764 Common - poly(A) polymerase Pput_4562 213 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 148545385 Common - electron transport protein SCO1/SenC Pput_0128 108 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 148550448 Common - helix-turn-helix- domain containing protein, AraC type Pput_5248 91 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148545649 Common - acyl-CoA dehydrogenase domain protein Pput_0394 150 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148546147 Common - extracellular solute-binding protein, family 1 Pput_0903 132 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 148547738 Nonpathogen - hypothetical protein Pput_2521 1 None None None 148547010 Common - putative prophage repressor Pput_1773 14 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 148550003 Common - transcriptional regulator, LysR family Pput_4801 154 COG0583 LysR, Transcriptional regulator Transcription 148546888 Common - Electron-transferring-flavoprotein dehydrogenase Pput_1650 108 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 148545629 Nonpathogen - hypothetical protein Pput_0374 1 None None None 148547617 Common - putative transcriptional regulator, AsnC family Pput_2396 131 COG1522 Lrp, Transcriptional regulators Transcription 148546774 Common - putative CheW protein Pput_1535 140 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 148548382 Common - putative transcriptional regulator, GntR family Pput_3172 214 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 148547098 Common - Chloride channel, core Pput_1867 138 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 148545625 Common - lipopolysaccharide kinase Pput_0370 2 None None None 148547211 Common - Alginate lyase 2 Pput_1989 1 None None None 148545499 Common - Serine O-acetyltransferase Pput_0243 189 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 148547100 Common - cation transporter Pput_1869 126 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 148549532 Common - Antibiotic biosynthesis monooxygenase Pput_4327 5 COG1359 COG1359, Uncharacterized conserved protein Function unknown 148546823 Common - transcriptional regulator, GntR family Pput_1585 131 COG1802 GntR, Transcriptional regulators Transcription 148548521 Common - major facilitator superfamily MFS_1 Pput_3313 12 COG2270 COG2270, Permeases of the major facilitator superfamily General function prediction only 148545350 Common - sulfatase Pput_0093 93 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 148545570 Common - binding-protein-dependent transport systems inner membrane component Pput_0315 204 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 148549260 Common purN phosphoribosylglycinamide formyltransferase Pput_4054 220 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 148547761 Common - luciferase family protein Pput_2544 106 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 148550503 Common - parB-like partition protein Pput_5303 189 COG1475 Spo0J, Predicted transcriptional regulators Transcription 148546677 Common - aldehyde dehydrogenase Pput_1437 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148549277 Common - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Pput_4071 145 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 148550411 Common - (p)ppGpp synthetase I, SpoT/RelA Pput_5211 208 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 161936355 Common - transaldolase B Pput_3574 174 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 148549496 Common - GTP-binding protein LepA Pput_4290 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 148550148 Common - conserved hypothetical protein 156 Pput_4946 12 COG3111 COG3111, Uncharacterized conserved protein Function unknown 148545997 Nonpathogen - hypothetical protein Pput_0751 5 COG4129 COG4129, Predicted membrane protein Function unknown 148549971 Common - GTP-binding protein, HSR1-related Pput_4769 227 COG2262 HflX, GTPases General function prediction only 148549486 Common - putative methyltransferase Pput_4280 55 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 148547887 Common - helix-turn-helix- domain containing protein, AraC type Pput_2671 69 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148549031 Common - pili assembly chaperone Pput_3825 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 148546329 Common - hypothetical protein Pput_1086 1 None None None 148548039 Common - protein of unknown function DUF419 Pput_2825 15 COG2315 MmcQ, Uncharacterized protein conserved in bacteria Function unknown 148547583 Common - hypothetical protein Pput_2362 1 None None None 148548194 Common - ABC-type branched-chain amino acid transport systems periplasmic component-like protein Pput_2984 30 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 148545524 Common - phosphoenolpyruvate carboxykinase Pput_0268 98 COG1866 PckA, Phosphoenolpyruvate carboxykinase (ATP) Energy production and conversion 148545990 Common - hypothetical protein Pput_0744 3 COG4319 COG4319, Ketosteroid isomerase homolog Function unknown 148545635 Common - putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase Pput_0380 105 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 148548247 Common - Arsenate resistance ArsH Pput_3037 53 COG0431 COG0431, Predicted flavoprotein General function prediction only 148548461 Common - hypothetical protein Pput_3253 2 None None None 148546854 Common - hypothetical protein Pput_1616 5 COG4736 CcoQ, Cbb3-type cytochrome oxidase, subunit 3 Posttranslational modification, protein turnover, chaperones 148546656 Common - RNA-binding S4 domain protein Pput_1416 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 148547044 Common nudC NADH pyrophosphatase Pput_1809 98 COG2816 NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding DNA replication, recombination, and repair 148547109 Common - binding-protein-dependent transport systems inner membrane component Pput_1879 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 148548959 Common - Fimbrial protein-like protein Pput_3753 8 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 148548981 Common - transcriptional regulator, LysR family Pput_3775 193 COG0583 LysR, Transcriptional regulator Transcription 148545782 Common - amino acid carrier protein Pput_0530 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 148547957 Common - GCN5-related N-acetyltransferase Pput_2741 7 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 148547826 Common - amidase Pput_2609 221 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 148545282 Common - hypothetical protein Pput_0023 30 COG5569 COG5569, Uncharacterized conserved protein Function unknown 148548445 Common - L-asparaginase, type II Pput_3237 133 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 148547820 Common - major facilitator superfamily MFS_1 Pput_2603 176 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148550072 Common - Holliday junction resolvase-like protein Pput_4870 179 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 148549991 Common - aspartyl protease-like protein Pput_4789 52 COG3577 COG3577, Predicted aspartyl protease General function prediction only 148546307 Common - hypothetical protein Pput_1064 1 None None None 148548073 Common - major facilitator superfamily MFS_1 Pput_2859 92 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148545956 Common - hypothetical protein Pput_0710 15 None None None 148548180 Common - hypothetical protein Pput_2970 12 None None None 148550222 Common - hypothetical protein Pput_5020 5 None None None 148545359 Common - protein of unknown function DUF1161 Pput_0102 3 None None None 148548383 Common - hypothetical protein Pput_3174 1 None None None 148549982 Common motB flagellar motor protein MotB Pput_4780 89 COG1360 MotB, Flagellar motor protein Cell motility and secretion 148546142 Common - glycine betaine/L-proline ABC transporter, ATPase subunit Pput_0898 249 COG1125 OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components Amino acid transport and metabolism 148549044 Common - GAF domain-containing protein-like protein Pput_3838 82 COG1956 COG1956, GAF domain-containing protein Signal transduction mechanisms 148546424 Common - hypothetical protein Pput_1181 1 None None None 148546011 Common - hypothetical protein Pput_0765 12 None None None 148546875 Common - hypothetical protein Pput_1637 4 None None None 148549232 Common - protein of unknown function DUF195 Pput_4026 142 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 148549332 Common - phage integrase family protein Pput_4126 87 COG0582 XerC, Integrase DNA replication, recombination, and repair 148546913 Common - amino acid adenylation domain Pput_1675 215 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 148547609 Common - aldo/keto reductase Pput_2388 204 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 148546507 Common - protein of unknown function UPF0118 Pput_1264 91 COG0628 PerM, Predicted permease General function prediction only 148548832 Common - SAM-dependent methyltransferase-like protein Pput_3626 46 COG2933 COG2933, Predicted SAM-dependent methyltransferase General function prediction only 148547316 Common - Acyl-CoA dehydrogenase-like protein Pput_2095 46 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148547590 Nonpathogen - hypothetical protein Pput_2369 2 None None None 148548963 Common - helix-turn-helix- domain containing protein, AraC type Pput_3757 73 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148548210 Common - ABC transporter related Pput_3000 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 148548941 Common - AraC-type transcriptional regulator domain protein Pput_3735 130 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148546896 Common - protein of unknown function UPF0153 Pput_1658 36 None None None 148549178 Common - hypothetical protein Pput_3972 9 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 148549013 Common - HAD-superfamily hydrolase, subfamily IA, variant 3 Pput_3807 196 COG0546 Gph, Predicted phosphatases General function prediction only 148547484 Common - transmembrane pair domain protein Pput_2263 41 COG4125 COG4125, Predicted membrane protein Function unknown 148549616 Common - AFG1-family ATPase Pput_4412 103 COG1485 COG1485, Predicted ATPase General function prediction only 148548299 Common - Pyrrolo-quinoline quinone Pput_3089 76 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 148548498 Common - Redoxin domain protein Pput_3290 86 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 148546616 Common - hypothetical protein Pput_1376 1 None None None 148550456 Common - acetyl-CoA carboxylase Pput_5256 237 COG0439 AccC, Biotin carboxylase Lipid metabolism 148549977 Common - carbohydrate kinase, YjeF related protein Pput_4775 222 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 148545910 Common - regulatory protein GntR, HTH Pput_0660 121 COG2186 FadR, Transcriptional regulators Transcription 148545466 Common - uroporphyrinogen-III synthase Pput_0209 68 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 148550282 Common - efflux transporter, RND family, MFP subunit Pput_5082 155 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148545490 Common - binding-protein-dependent transport systems inner membrane component Pput_0234 184 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 148549525 Common - glycoside hydrolase, family 3 domain protein Pput_4320 127 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 148547164 Common - DNA topoisomerase Pput_1939 45 COG3569 COG3569, Topoisomerase IB DNA replication, recombination, and repair 148547829 Common - YD repeat protein Pput_2612 55 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 148548377 Common - major facilitator superfamily MFS_1 Pput_3167 124 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148548929 Common - exporter of the RND superfamily-like protein Pput_3723 44 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 148549298 Nonpathogen - hypothetical protein Pput_4092 1 None None None 148549667 Common - TonB-dependent siderophore receptor Pput_4465 115 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148546085 Common - hypothetical protein Pput_0841 4 None None None 148545894 Common ileS isoleucyl-tRNA synthetase Pput_0644 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 148548265 Common - flavin reductase domain protein, FMN-binding Pput_3055 124 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 148545367 Common - Carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein Pput_0110 187 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 148546265 Common - putative cold-shock DNA-binding domain protein Pput_1022 179 COG1278 CspC, Cold shock proteins Transcription 148546585 Common - hypothetical protein Pput_1343 1 None None None 148547154 Common - Male sterility C-terminal domain Pput_1929 46 COG3320 COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 148549648 Common - hypothetical protein Pput_4446 8 None None None 148548370 Common - Methyltransferase type 12 Pput_3160 70 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 148547937 Common - transcriptional regulator, TetR family Pput_2721 93 COG1309 AcrR, Transcriptional regulator Transcription 148548920 Common - TPR repeat-containing protein Pput_3714 48 COG4976 COG4976, Predicted methyltransferase (contains TPR repeat) General function prediction only 148549743 Common - CDP-diacylglycerol--serine O-phosphatidyltransferase Pput_4541 135 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 148547898 Common - hypothetical protein Pput_2682 1 None None None 148548795 Common - type IV pilus assembly PilZ Pput_3589 4 None None None 148549490 Common - heavy metal sensor signal transduction histidine kinase Pput_4284 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148548439 Common - RbsD or FucU transport Pput_3231 49 COG1869 RbsD, ABC-type ribose transport system, auxiliary component Carbohydrate transport and metabolism 148549206 Common - carboxyl-terminal protease Pput_4000 181 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 148549759 Common - transcriptional regulator, TraR/DksA family Pput_4557 144 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 148550142 Common - potassium efflux protein KefA Pput_4940 221 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 148550382 Common - protein of unknown function UPF0153 Pput_5182 9 None None None 148549989 Common - protein of unknown function DUF330 Pput_4787 15 COG3009 COG3009, Uncharacterized protein conserved in bacteria Function unknown 148547861 Common - PpiC-type peptidyl-prolyl cis-trans isomerase Pput_2645 148 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 148545511 Common ssuB aliphatic sulfonates transport ATP-binding subunit Pput_0255 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 148547788 Common - transcriptional regulator, LysR family Pput_2571 176 COG0583 LysR, Transcriptional regulator Transcription 148547294 Common - major facilitator superfamily MFS_1 Pput_2072 210 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148547638 Common - hypothetical protein Pput_2418 9 COG5266 CbiK, ABC-type Co2+ transport system, periplasmic component Inorganic ion transport and metabolism 148547332 Common - aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding Pput_2111 114 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 148548316 Common - protein of unknown function DUF606 Pput_3106 25 COG3238 COG3238, Uncharacterized protein conserved in bacteria Function unknown 148548221 Common - protein of unknown function DUF861, cupin_3 Pput_3011 23 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 148548441 Common - Alanine racemase Pput_3233 129 COG1609 PurR, Transcriptional regulators Transcription 148546943 Common - protein of unknown function UPF0118 Pput_1705 104 COG0628 PerM, Predicted permease General function prediction only 148548652 Common - UspA domain protein Pput_3444 41 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 148548051 Common - sulfatase Pput_2837 54 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 148548749 Common - extracellular solute-binding protein, family 1 Pput_3542 126 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 148545576 Common - thioesterase-like protein Pput_0321 30 COG0824 FcbC, Predicted thioesterase General function prediction only 148545397 Common - DNA polymerase I Pput_0140 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 148549630 Common - extracellular solute-binding protein, family 3 Pput_4428 107 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148548889 Common - citrate/H+ symporter, CitMHS family Pput_3683 38 COG2851 CitM, H+/citrate symporter Energy production and conversion 148547225 Common - MCP methyltransferase, CheR-type Pput_2003 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 148547321 Common - N-acetyl-gamma-glutamyl-phosphate reductase Pput_2100 212 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 148548543 Common - Spore coat U domain protein Pput_3335 23 COG5430 COG5430, Uncharacterized secreted protein Function unknown 148545293 Common - hypothetical protein Pput_0036 3 None None None 148546275 Common - protein of unknown function DUF1109 Pput_1032 19 COG4944 COG4944, Uncharacterized protein conserved in bacteria Function unknown 148546670 Common - polar amino acid ABC transporter, inner membrane subunit Pput_1430 172 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 148548671 Common - hypothetical protein Pput_3463 1 None None None 148546736 Common fliE flagellar hook-basal body protein FliE Pput_1497 86 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 148548805 Common - LexA repressor Pput_3599 172 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 148545349 Common - Substrate-binding region of ABC-type glycine betaine transport system Pput_0092 64 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 148547335 Nonpathogen - hypothetical protein Pput_2114 1 None None None 148548157 Common - hypothetical protein Pput_2947 21 None None None 148549806 Common - hypothetical protein Pput_4604 1 None None None 148547930 Common - glutaredoxin 3 Pput_2714 125 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 148547303 Common - transcriptional regulator, GntR family Pput_2081 137 COG1802 GntR, Transcriptional regulators Transcription 148548875 Common - transcriptional regulator, LysR family Pput_3669 113 COG0583 LysR, Transcriptional regulator Transcription 148548131 Common - single-strand DNA-binding protein Pput_2920 18 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 148550030 Common - extracellular solute-binding protein, family 3 Pput_4828 26 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148547525 Common - FAD dependent oxidoreductase Pput_2304 18 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 148547200 Common pbpG D-alanyl-D-alanine endopeptidase Pput_1976 154 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 148549563 Nonpathogen - hypothetical protein Pput_4358 1 None None None 148549482 Common - Carbohydrate-selective porin OprB Pput_4276 20 COG3659 OprB, Carbohydrate-selective porin Cell envelope biogenesis, outer membrane 148550017 Common - glycosyl transferase, group 1 Pput_4815 52 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 148548694 Common - hypothetical protein Pput_3486 3 None None None 148547921 Common - transcriptional regulator, HxlR family Pput_2705 135 COG1733 COG1733, Predicted transcriptional regulators Transcription 148548997 Common - molybdenum cofactor synthesis domain protein Pput_3791 197 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 148548819 Common - putative CheA signal transduction histidine kinase Pput_3613 1 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 148547018 Common - alpha amylase, catalytic region Pput_1783 95 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 148546560 Common - cysteine synthase A Pput_1318 219 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 148547327 Nonpathogen - hypothetical protein Pput_2106 1 None None None 148548025 Common - hypothetical protein Pput_2811 2 None None None 148545411 Common - Inhibitor of vertebrate lysozyme Pput_0154 6 None None None 148546664 Common phhA phenylalanine 4-monooxygenase Pput_1424 45 COG3186 COG3186, Phenylalanine-4-hydroxylase Amino acid transport and metabolism 148546213 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B Pput_0970 213 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 148549552 Common - benzoate transport Pput_4347 107 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148550023 Common - acyl-CoA dehydrogenase domain protein Pput_4821 146 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148546574 Common - hypothetical protein Pput_1332 1 None None None 148547255 Common - two component transcriptional regulator, winged helix family Pput_2033 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148549559 Common - deacetylase-like protein Pput_4354 6 COG3233 COG3233, Predicted deacetylase General function prediction only 148546925 Common - thioesterase superfamily protein Pput_1687 29 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 148547709 Common - NUDIX hydrolase Pput_2492 51 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 148550051 Common - S-adenosyl-L-homocysteine hydrolase Pput_4849 177 COG0499 SAM1, S-adenosylhomocysteine hydrolase Coenzyme metabolism 148549456 Common - threonine synthase Pput_4250 135 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 148545686 Common apaG ApaG Pput_0434 88 COG2967 ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport Inorganic ion transport and metabolism 148550103 Common - D-tyrosyl-tRNA deacylase Pput_4901 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 148549352 Common - hypothetical protein Pput_4146 3 None None None 148545306 Common - GtrA family protein Pput_0049 10 COG2246 COG2246, Predicted membrane protein Function unknown 148549019 Common - protein of unknown function DUF343 Pput_3813 102 COG2835 COG2835, Uncharacterized conserved protein Function unknown 148550161 Common - nuclease (SNase domain protein) Pput_4959 51 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 148550235 Common - hypothetical protein Pput_5034 19 COG4938 COG4938, Uncharacterized conserved protein Function unknown 148548858 Common - RNA polymerase sigma factor SigX Pput_3652 166 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148548944 Common - short-chain dehydrogenase/reductase SDR Pput_3738 238 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 148550342 Common - ammonium transporter Pput_5142 202 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 148549245 Common - Phosphoglycerate mutase Pput_4039 163 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 148546628 Common - putative agmatinase Pput_1388 160 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 148549656 Common - major facilitator superfamily MFS_1 Pput_4454 164 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148548670 Common - CHAD domain containing protein Pput_3462 1 COG5607 COG5607, Uncharacterized conserved protein Function unknown 148548990 Common - secretion protein HlyD family protein Pput_3784 149 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 148548162 Common - protein of unknown function DUF159 Pput_2952 96 COG2135 COG2135, Uncharacterized conserved protein Function unknown 148548402 Common - ATPase-like protein Pput_3194 33 COG4637 COG4637, Predicted ATPase General function prediction only 148545680 Common cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase Pput_0428 192 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 148546116 Common - cysteine desulfurase IscS Pput_0872 239 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 148547970 Common - ABC transporter related Pput_2755 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 148549575 Common - major facilitator superfamily MFS_1 Pput_4370 147 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148549793 Common - dihydrodipicolinate reductase Pput_4591 217 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 148549098 Common - methyl-accepting chemotaxis sensory transducer Pput_3892 133 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148548827 Common - methyl-accepting chemotaxis sensory transducer Pput_3621 138 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148548880 Common - RND efflux system, outer membrane lipoprotein, NodT family Pput_3674 112 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148546226 Common - hypothetical protein Pput_0983 2 None None None 148548590 Common - hypothetical protein Pput_3382 9 None None None 148547444 Common - response regulator receiver protein Pput_2223 214 COG4566 TtrR, Response regulator Signal transduction mechanisms 148546258 Common valS valyl-tRNA synthetase Pput_1015 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 148550355 Common - transcriptional regulator, AraC family Pput_5155 160 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148548648 Common - alpha-L-glutamate ligase-like protein Pput_3440 19 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 148545328 Common - transcriptional regulator, LysR family Pput_0071 157 COG0583 LysR, Transcriptional regulator Transcription 148547752 Common - phage integrase family protein Pput_2535 48 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 148548223 Common - putative transcriptional regulator, MerR family Pput_3013 37 COG0789 SoxR, Predicted transcriptional regulators Transcription 148545420 Common - sodium-dependent inorganic phosphate (Pi) transporter Pput_0163 86 COG1283 NptA, Na+/phosphate symporter Inorganic ion transport and metabolism 148547384 Nonpathogen - hypothetical protein Pput_2163 1 None None None 148546402 Common - protein of unknown function DUF1145 Pput_1159 2 COG3776 COG3776, Predicted membrane protein Function unknown 148546645 Common - nitroreductase Pput_1405 100 COG0778 NfnB, Nitroreductase Energy production and conversion 148548152 Common - hypothetical protein Pput_2942 14 None None None 148548036 Common - FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pput_2822 175 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 148546004 Common lolB outer membrane lipoprotein LolB Pput_0758 54 COG3017 LolB, Outer membrane lipoprotein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 148548456 Common - Integral membrane protein TerC Pput_3248 114 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 148546330 Common - general secretion pathway protein D Pput_1087 142 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 148550310 Common - protein of unknown function DUF710 Pput_5110 48 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 148550064 Common - CheA signal transduction histidine kinase Pput_4862 223 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 148549001 Common - dTMP kinase Pput_3795 225 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 148550405 Nonpathogen - hypothetical protein Pput_5205 1 None None None 148548318 Common - hypothetical protein Pput_3108 8 None None None 148548091 Common - FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pput_2878 236 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 148549020 Common lpxK tetraacyldisaccharide 4'-kinase Pput_3814 123 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 148545518 Common - integral membrane sensor signal transduction histidine kinase Pput_0262 215 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148546148 Common - protein of unknown function DUF861, cupin_3 Pput_0904 31 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 148549081 Common - hypothetical protein Pput_3875 1 None None None 148549346 Common - hypothetical protein Pput_4140 7 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 148546972 Common - NADH dehydrogenase subunit N Pput_1734 210 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 148548107 Common - short-chain dehydrogenase/reductase SDR Pput_2895 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148549444 Common - binding-protein-dependent transport systems inner membrane component Pput_4238 195 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 148547152 Common - isochorismatase hydrolase Pput_1927 65 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 148548895 Common - HAD-superfamily hydrolase, subfamily IA, variant 3 Pput_3689 177 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 148549367 Common - Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase Pput_4161 206 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 148549824 Nonpathogen - hypothetical protein Pput_4622 1 None None None 148546613 Common - transposase IS3/IS911 family protein Pput_1373 28 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 148549309 Common - hypothetical protein Pput_4103 16 COG5281 COG5281, Phage-related minor tail protein Function unknown 148546253 Common - hypothetical protein Pput_1010 10 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 148549538 Common - transcriptional regulator, LysR family Pput_4333 180 COG0583 LysR, Transcriptional regulator Transcription 148550480 Common - Methyltransferase type 12 Pput_5280 6 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 148548326 Common - beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family Pput_3116 116 COG1414 IclR, Transcriptional regulator Transcription 148548475 Common - sugar efflux transporter Pput_3267 104 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148549603 Common - LppC family lipoprotein Pput_4399 44 COG3107 LppC, Putative lipoprotein General function prediction only 148548056 Common - HupE/UreJ protein Pput_2842 2 COG2370 HupE, Hydrogenase/urease accessory protein Posttranslational modification, protein turnover, chaperones 148550401 Common - hypothetical protein Pput_5201 8 COG3296 COG3296, Uncharacterized protein conserved in bacteria Function unknown 148548900 Common - 3-hydroxybutyryl-CoA epimerase Pput_3694 161 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 148550335 Nonpathogen - hypothetical protein Pput_5135 1 COG5567 COG5567, Predicted small periplasmic lipoprotein Cell motility and secretion 148546207 Common - hypothetical protein Pput_0964 3 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148548931 Common - aminopeptidase N Pput_3725 160 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 148549915 Common - hypothetical protein Pput_4713 1 None None None 148548169 Common - domain of unknown function DUF1738 Pput_2959 48 COG4227 COG4227, Antirestriction protein DNA replication, recombination, and repair 148546634 Common - yecA family protein Pput_1394 7 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 148548737 Common - 2-aminoethylphosphonate--pyruvate transaminase Pput_3529 158 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 148549225 Common - small multidrug resistance protein Pput_4019 128 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 148547812 Common - transcriptional regulator, LysR family Pput_2595 191 COG0583 LysR, Transcriptional regulator Transcription 148546682 Common - aspartate kinase Pput_1442 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 148548739 Common - protein of unknown function UPF0118 Pput_3531 197 COG0628 PerM, Predicted permease General function prediction only 148548008 Common - hypothetical protein Pput_2794 4 None None None 148549416 Common - hypothetical protein Pput_4210 1 None None None 148550351 Common - response regulator receiver protein Pput_5151 185 COG4566 TtrR, Response regulator Signal transduction mechanisms 148546449 Common - outer membrane porin Pput_1206 7 None None None 148549850 Common - ATP-dependent helicase HrpB Pput_4648 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 148546409 Common - hypothetical protein Pput_1166 1 None None None 148548605 Common - hypothetical protein Pput_3397 4 COG4197 COG4197, Uncharacterized protein conserved in bacteria, prophage-related Function unknown 148548116 Common - aldehyde dehydrogenase Pput_2904 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148548599 Nonpathogen - hypothetical protein Pput_3391 1 None None None 148549746 Common - acetolactate synthase 3 catalytic subunit Pput_4544 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 148546196 Common - diguanylate cyclase/phosphodiesterase Pput_0953 171 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148547530 Common - Quinohemoprotein amine dehydrogenase, gamma subunit Pput_2309 5 None None None 148550331 Common cyaA adenylate cyclase Pput_5131 25 COG3072 CyaA, Adenylate cyclase Nucleotide transport and metabolism 148549762 Common - multi-sensor signal transduction histidine kinase Pput_4560 222 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 148545745 Common rpsC 30S ribosomal protein S3 Pput_0493 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 148549322 Common - phage terminase Pput_4116 28 COG4626 COG4626, Phage terminase-like protein, large subunit General function prediction only 148548835 Common - pseudouridine synthase Pput_3629 202 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 148547021 Common - outer membrane autotransporter barrel domain Pput_1786 20 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148549952 Common - hypothetical protein Pput_4750 73 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 148550132 Common - peptidase M23B Pput_4930 186 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 148548909 Common - acyl-CoA dehydrogenase domain protein Pput_3703 161 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148549234 Common - hypothetical protein Pput_4028 1 None None None 148550115 Common - protein of unknown function DUF924 Pput_4913 63 COG3803 COG3803, Uncharacterized protein conserved in bacteria Function unknown 148547989 Common - riboflavin synthase subunit alpha Pput_2775 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 148549170 Common - asparagine synthase (glutamine-hydrolyzing) Pput_3964 159 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 148545339 Common - sun protein Pput_0082 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 148547718 Common ligD ATP-dependent DNA ligase Pput_2501 111 COG3285 COG3285, Predicted eukaryotic-type DNA primase DNA replication, recombination, and repair 148550372 Common - multidrug efflux protein NorA Pput_5172 141 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 148548765 Common - peptidase C26 Pput_3558 123 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 148545667 Common - protein of unknown function DUF955 Pput_0412 50 COG2856 COG2856, Predicted Zn peptidase Amino acid transport and metabolism 148545970 Common - CreA family protein Pput_0724 57 COG3045 CreA, Uncharacterized protein conserved in bacteria Function unknown 148547730 Common - aldo/keto reductase Pput_2513 110 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 148549706 Common - type IV pilus assembly PilZ Pput_4504 12 None None None 148550081 Common - poly(R)-hydroxyalkanoic acid synthase, class II Pput_4879 74 COG3243 PhaC, Poly(3-hydroxyalkanoate) synthetase Lipid metabolism 148550138 Common - betaine aldehyde dehydrogenase Pput_4936 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148546606 Common - transcriptional regulator, LysR family Pput_1366 171 COG0583 LysR, Transcriptional regulator Transcription 148548426 Common - putative transcriptional regulator, MerR family Pput_3218 101 COG0789 SoxR, Predicted transcriptional regulators Transcription 148547292 Common - MaoC domain protein dehydratase Pput_2070 40 COG2030 MaoC, Acyl dehydratase Lipid metabolism 148547886 Common - protein of unknown function DUF1234 Pput_2670 50 COG3545 COG3545, Predicted esterase of the alpha/beta hydrolase fold General function prediction only 148547786 Common - hypothetical protein Pput_2569 17 None None None 148548767 Common - transcriptional regulator, XRE family Pput_3560 64 COG1396 HipB, Predicted transcriptional regulators Transcription 148545377 Common - Cytochrome c oxidase, subunit I Pput_0120 174 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 148548569 Nonpathogen - hypothetical protein Pput_3361 1 None None None 148548688 Common - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Pput_3480 187 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148547737 Common - outer membrane protein-like protein Pput_2520 38 COG3652 COG3652, Predicted outer membrane protein Function unknown 148547607 Common - two component transcriptional regulator, winged helix family Pput_2386 219 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148548147 Common - transcriptional regulator, LysR family Pput_2937 143 COG0583 LysR, Transcriptional regulator Transcription 148545418 Common - hypothetical protein Pput_0161 11 None None None 148550217 Common - AAA ATPase Pput_5015 9 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 148545522 Common - phosphoesterase, PA-phosphatase related Pput_0266 14 None None None 148550245 Nonpathogen - hypothetical protein Pput_5045 1 None None None 148549993 Common - DNA topoisomerase IV subunit B Pput_4791 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 148546415 Common livG leucine/isoleucine/valine transporter ATP-binding subunit Pput_1172 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 148550053 Common - hypothetical protein Pput_4851 5 None None None 148545454 Common - Fusaric acid resistance protein conserved region Pput_0197 48 COG1289 COG1289, Predicted membrane protein Function unknown 148547927 Common - transcriptional regulator, LysR family Pput_2711 188 COG0583 LysR, Transcriptional regulator Transcription 148550464 Common - thioesterase superfamily protein Pput_5264 129 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 148549839 Common - GCN5-related N-acetyltransferase Pput_4637 102 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 148549940 Common - N-acylglucosamine 2-epimerase Pput_4738 36 COG2942 COG2942, N-acyl-D-glucosamine 2-epimerase Carbohydrate transport and metabolism 148547045 Common - protein of unknown function DUF81 Pput_1810 90 COG0730 COG0730, Predicted permeases General function prediction only 148547404 Common - aromatic amino acid permease Pput_2183 33 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 148549690 Common - flavodoxin Pput_4488 59 COG0716 FldA, Flavodoxins Energy production and conversion 148548195 Common - inner-membrane translocator Pput_2985 122 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 148547128 Common - outer membrane porin Pput_1898 9 None None None 148550186 Common - signal recognition particle-docking protein FtsY Pput_4984 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 148549431 Common - transcriptional regulator, TetR family Pput_4225 7 COG3226 COG3226, Uncharacterized protein conserved in bacteria Function unknown 148548098 Nonpathogen - hypothetical protein Pput_2885 1 None None None 148546768 Common - CheA signal transduction histidine kinase Pput_1529 150 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 148546793 Common - peptidylprolyl isomerase, FKBP-type Pput_1554 150 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 148547103 Common - methyl-accepting chemotaxis sensory transducer Pput_1872 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148549270 Common cysM cysteine synthase B Pput_4064 230 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 148547276 Common - Muconolactone Delta-isomerase Pput_2054 23 COG4829 CatC1, Muconolactone delta-isomerase Secondary metabolites biosynthesis, transport, and catabolism 148549300 Nonpathogen - hypothetical protein Pput_4094 1 None None None 148546815 Common - Nucleoside-binding outer membrane protein-like protein Pput_1577 18 COG3248 Tsx, Nucleoside-binding outer membrane protein Cell envelope biogenesis, outer membrane 148549943 Common - ABC transporter related Pput_4741 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 148546165 Common - outer membrane porin Pput_0922 13 None None None 148545426 Common - hypothetical protein Pput_0169 3 None None None 148546282 Common - arginine/ornithine antiporter Pput_1039 96 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 148547870 Common - PpiC-type peptidyl-prolyl cis-trans isomerase Pput_2654 121 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 148545551 Common - hypothetical protein Pput_0295 1 None None None 148546332 Common - general secretion pathway protein F Pput_1089 142 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 148548869 Common - diaminopimelate decarboxylase Pput_3663 218 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 148547571 Common - two component transcriptional regulator, LuxR family Pput_2350 213 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148547842 Common - protein of unknown function DUF1305 Pput_2626 47 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 148547144 Common - protein of unknown function DUF1003 Pput_1917 42 COG4420 COG4420, Predicted membrane protein Function unknown 148547176 Common - OmpA/MotB domain protein Pput_1951 125 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 148546457 Common - dienelactone hydrolase Pput_1214 89 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 148547193 Common - periplasmic solute binding protein Pput_1968 155 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 148548874 Common - hypothetical protein Pput_3668 5 None None None 148547011 Common - Carbamoyl-phosphate synthase L chain, ATP-binding Pput_1774 234 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 148548033 Common - Spermidine/putrescine-binding periplasmic protein-like protein Pput_2819 59 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 148547844 Common - hypothetical protein Pput_2628 25 COG3521 COG3521, Uncharacterized protein conserved in bacteria Function unknown 148545871 Common - acetyl-CoA acetyltransferase Pput_0621 170 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 148546054 Common - thioredoxin reductase Pput_0809 246 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 148545530 Common - HAD-superfamily hydrolase, subfamily IA, variant 3 Pput_0274 41 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 148548558 Common - Propeptide, PepSY amd peptidase M4 Pput_3350 3 COG3212 COG3212, Predicted membrane protein Function unknown 148547562 Common - integral membrane sensor signal transduction histidine kinase Pput_2341 215 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 148547181 Common - bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein Pput_1956 224 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 148545846 Common - GAF modulated sigma54 specific transcriptional regulator, Fis family Pput_0596 172 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 148545713 Common - histidine triad (HIT) protein Pput_0461 232 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 148548395 Common - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pput_3187 229 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 148547663 Common - extracellular solute-binding protein, family 3 Pput_2444 80 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148546238 Common - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family Pput_0995 104 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 148547198 Common - Lysine/ornithine N-monooxygenase-like protein Pput_1973 52 COG3486 IucD, Lysine/ornithine N-monooxygenase Secondary metabolites biosynthesis, transport, and catabolism 148546433 Common - Formate/nitrite family of transporter-like protein Pput_1190 75 COG2116 FocA, Formate/nitrite family of transporters Inorganic ion transport and metabolism 148550394 Common radC DNA repair protein RadC Pput_5194 179 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 148548571 Common - hypothetical protein Pput_3363 9 None None None 148549060 Common - transcriptional regulator, MarR family Pput_3854 129 COG1846 MarR, Transcriptional regulators Transcription 148545657 Common - pyrroloquinoline quinone biosynthesis protein PqqD Pput_0402 14 None None None 148547963 Common - hypothetical protein Pput_2747 1 None None None 148547420 Common - short-chain dehydrogenase/reductase SDR Pput_2199 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148548100 Common - 4-hydroxy-2-ketovalerate aldolase Pput_2888 203 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 148549695 Common - short chain dehydrogenase Pput_4493 168 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148545692 Common - Nucleotidyl transferase Pput_0440 225 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 148546696 Common - major facilitator superfamily MFS_1 Pput_1456 66 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 148546881 Common - peptidase M19, renal dipeptidase Pput_1643 99 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 148547325 Common - 3-demethylubiquinone-9 3-methyltransferase Pput_2104 64 COG3865 COG3865, Uncharacterized protein conserved in bacteria Function unknown 148547971 Common - hypothetical protein Pput_2756 27 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148546316 Common - ADP-ribosyl-(dinitrogen reductase) hydrolase Pput_1073 60 COG1397 DraG, ADP-ribosylglycohydrolase Posttranslational modification, protein turnover, chaperones 148550168 Common - twitching motility protein Pput_4966 212 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 148546033 Common - peptidase M48, Ste24p Pput_0787 128 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 148549457 Common - homoserine dehydrogenase Pput_4251 217 COG0460 ThrA, Homoserine dehydrogenase Amino acid transport and metabolism 148547118 Common - transcriptional regulator, TetR family Pput_1888 94 COG1309 AcrR, Transcriptional regulator Transcription 148547852 Common - excinuclease ABC, A subunit Pput_2636 230 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 148546173 Common - YceI family protein Pput_0930 11 COG2353 COG2353, Uncharacterized conserved protein Function unknown 148547509 Common - type II secretion system protein E Pput_2288 214 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 148549136 Common - WxcM domain protein, C-terminal domain protein Pput_3930 207 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 148548271 Common - hypothetical protein Pput_3061 12 None None None 148546352 Common - ABC transporter related Pput_1109 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 148549218 Common - short-chain dehydrogenase/reductase SDR Pput_4012 234 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 148549379 Common lpxB lipid-A-disaccharide synthase Pput_4173 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 148547860 Common - phospho-2-dehydro-3-deoxyheptonate aldolase Pput_2644 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 148548255 Common - exodeoxyribonuclease III Pput_3045 196 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 148546814 Common - Nucleoside-binding outer membrane protein-like protein Pput_1576 17 COG3248 Tsx, Nucleoside-binding outer membrane protein Cell envelope biogenesis, outer membrane 148549668 Common - anti-FecI sigma factor, FecR Pput_4466 48 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 148549959 Common rpsR 30S ribosomal protein S18 Pput_4757 214 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 148550435 Common - phosphate ABC transporter, inner membrane subunit PstA Pput_5235 219 COG4985 COG4985, ABC-type phosphate transport system, auxiliary component Inorganic ion transport and metabolism 148548551 Common - AFG1-family ATPase Pput_3343 99 COG1485 COG1485, Predicted ATPase General function prediction only 148545827 Common - inorganic pyrophosphatase Pput_0577 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 148550499 Common - F0F1 ATP synthase subunit B Pput_5299 96 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 148550369 Common - transcriptional regulator, LysR family Pput_5169 127 COG0583 LysR, Transcriptional regulator Transcription 148546110 Common secF preprotein translocase subunit SecF Pput_0866 203 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 148546512 Common - beta-lactamase domain protein Pput_1269 64 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 148548547 Common - multi-sensor signal transduction histidine kinase Pput_3339 221 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 148547977 Common - carboxynorspermidine decarboxylase Pput_2763 57 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 148550272 Common - NLPA lipoprotein Pput_5072 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 148549112 Common - Capsule polysaccharide biosynthesis protein Pput_3906 9 COG4092 COG4092, Predicted glycosyltransferase involved in capsule biosynthesis Cell envelope biogenesis, outer membrane 148547549 Common - diguanylate phosphodiesterase Pput_2328 163 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 148546500 Common - methyl-accepting chemotaxis sensory transducer Pput_1257 141 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148546935 Common - TonB-dependent receptor, plug Pput_1697 118 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 148546786 Common - cytochrome C biogenesis protein Pput_1547 90 COG3088 CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes Posttranslational modification, protein turnover, chaperones 148549921 Common - ABC-type branched-chain amino acid transport systems periplasmic component-like protein Pput_4719 112 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 148545364 Common - hypothetical protein Pput_0107 1 None None None 148547395 Common - Rhodanese domain protein Pput_2174 14 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 148548281 Common - DNA-binding transcriptional dual regulator Pput_3071 179 COG0583 LysR, Transcriptional regulator Transcription 148549840 Common - putative phosphohistidine phosphatase, SixA Pput_4638 4 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 148548335 Common - putative FAD-binding dehydrogenase Pput_3125 66 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 148545503 Common tauB taurine transporter ATP-binding subunit Pput_0247 249 COG4525 TauB, ABC-type taurine transport system, ATPase component Inorganic ion transport and metabolism 148545467 Common - protein of unknown function DUF513, hemX Pput_0210 34 COG2959 HemX, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 148547054 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Pput_1819 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 148549611 Common - ubiquinol-cytochrome c reductase, iron-sulfur subunit Pput_4407 92 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 148546067 Common - outer membrane porin Pput_0822 14 None None None 148549826 Common - TonB-dependent siderophore receptor Pput_4624 123 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148548954 Common - hypothetical protein Pput_3748 10 None None None 148549155 Common - 3-demethylubiquinone-9 3-methyltransferase Pput_3949 184 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 148549691 Common - putative PAS/PAC sensor protein Pput_4489 86 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 148548109 Common - aromatic-ring-hydroxylating dioxygenase, beta subunit Pput_2897 33 COG5517 COG5517, Small subunit of phenylpropionate dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 148550291 Common - Glutamate--putrescine ligase Pput_5091 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 148546072 Common - type I secretion membrane fusion protein, HlyD family Pput_0827 142 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 148546181 Common - hypothetical protein Pput_0938 69 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 148549679 Common - Glu/Leu/Phe/Val dehydrogenase, dimerisation region Pput_4477 142 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 148549007 Common - malonyl CoA-acyl carrier protein transacylase Pput_3801 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 148549119 Common - Capsule polysaccharide biosynthesis protein Pput_3913 30 COG3562 KpsS, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 148549091 Common - isochorismatase hydrolase Pput_3885 107 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 148547728 Common - hypothetical protein Pput_2511 7 None None None 148548384 Common - hypothetical protein Pput_3176 8 None None None 148546386 Common - DEAD/H associated domain protein Pput_1143 130 COG1201 Lhr, Lhr-like helicases General function prediction only 148550277 Common - sulfate ABC transporter, inner membrane subunit CysT Pput_5077 233 COG0555 CysU, ABC-type sulfate transport system, permease component Posttranslational modification, protein turnover, chaperones 148546464 Common - protein of unknown function DUF1456 Pput_1221 31 COG4807 COG4807, Uncharacterized protein conserved in bacteria Function unknown 148550362 Common - Amidohydrolase 3 Pput_5162 100 COG1574 COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 148545809 Common - periplasmic binding protein Pput_0559 63 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 148548975 Common - aspartate-semialdehyde dehydrogenase Pput_3769 166 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 148546537 Common - Cystathionine gamma-lyase Pput_1294 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 148550424 Common - Rubredoxin-type Fe(Cys)4 protein Pput_5224 116 COG1773 COG1773, Rubredoxin Energy production and conversion 148545323 Common - integral membrane protein-like protein Pput_0066 14 COG5455 COG5455, Predicted integral membrane protein Function unknown 148549620 Common - methionine gamma-lyase Pput_4416 211 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 148547574 Common - hypothetical protein Pput_2353 37 COG2073 CbiG, Cobalamin biosynthesis protein CbiG Coenzyme metabolism 148549957 Common rplI 50S ribosomal protein L9 Pput_4755 195 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 148549257 Common - protein of unknown function UPF0118 Pput_4051 171 COG0628 PerM, Predicted permease General function prediction only 148545855 Common - translation initiation factor SUI1 Pput_0605 51 COG0023 SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins Translation, ribosomal structure and biogenesis 148547982 Common - Radical SAM domain protein Pput_2768 55 COG4277 COG4277, Predicted DNA-binding protein with the Helix-hairpin-helix motif General function prediction only 148550159 Common - penicillin-binding protein, 1A family Pput_4957 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 148546454 Common - two component transcriptional regulator, winged helix family Pput_1211 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148550261 Common - FAD linked oxidase domain protein Pput_5061 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 148545777 Common - formate dehydrogenase, gamma subunit Pput_0525 70 COG2864 FdnI, Cytochrome b subunit of formate dehydrogenase Energy production and conversion 148546016 Common - NAD/FAD-dependent oxidoreductase-like protein Pput_0770 39 COG3380 COG3380, Predicted NAD/FAD-dependent oxidoreductase General function prediction only 148549196 Common - hypothetical protein Pput_3990 1 None None None 148549710 Common - oxidoreductase FAD/NAD(P)-binding domain protein Pput_4508 120 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 148548860 Common - hypothetical protein Pput_3654 1 None None None 148549719 Common - protocatechuate 3,4-dioxygenase, alpha subunit Pput_4517 38 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 148545843 Common - Transketolase, central region Pput_0593 208 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 148547907 Common - shikimate 5-dehydrogenase Pput_2691 195 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 148549533 Common - AraC-type transcriptional regulator domain protein Pput_4328 127 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148549105 Common - hypothetical protein Pput_3899 1 None None None 148545537 Common - Agmatine deiminase Pput_0281 87 COG2957 COG2957, Peptidylarginine deiminase and related enzymes Amino acid transport and metabolism 148549123 Common - Capsule polysaccharide biosynthesis protein Pput_3917 30 COG3563 KpsC, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 148548022 Common - DSBA oxidoreductase Pput_2808 46 COG3917 NahD, 2-hydroxychromene-2-carboxylate isomerase Secondary metabolites biosynthesis, transport, and catabolism 148550298 Common - hypothetical protein Pput_5098 3 None None None 148547345 Common - protein of unknown function DUF879 Pput_2124 48 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 148545562 Common - AsmA family protein Pput_0307 42 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 148549674 Common - hypothetical protein Pput_4472 1 None None None 148545852 Common - response regulator receiver modulated diguanylate cyclase Pput_0602 215 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 148546631 Common - DTW domain containing protein Pput_1391 39 COG3148 COG3148, Uncharacterized conserved protein Function unknown 148548201 Common - Acyl-CoA dehydrogenase, type 2, C-terminal domain Pput_2991 119 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148547235 Common - putative transcriptional regulator, GntR family Pput_2013 185 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 148549069 Common - hypothetical protein Pput_3863 1 None None None 148548771 Common - transcription activator, effector binding Pput_3564 127 COG3449 COG3449, DNA gyrase inhibitor DNA replication, recombination, and repair 148547354 Common - hypothetical protein Pput_2133 18 None None None 148547920 Common - Alcohol dehydrogenase, zinc-binding domain protein Pput_2704 189 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 148547873 Common - transcriptional regulator, AraC family Pput_2657 130 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148545683 Common - putative serine protein kinase, PrkA Pput_0431 69 COG2766 PrkA, Putative Ser protein kinase Signal transduction mechanisms 148547449 Common - PAS/PAC sensor hybrid histidine kinase Pput_2228 209 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 148550071 Common - hypothetical protein Pput_4869 129 COG1678 COG1678, Putative transcriptional regulator Transcription 148547597 Common - Gluconate 2-dehydrogenase (acceptor) Pput_2376 66 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 148547686 Common - GCN5-related N-acetyltransferase Pput_2469 92 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 148547471 Common - hypothetical protein Pput_2250 1 None None None 148548278 Common - proteasome-type protease-like protein Pput_3068 54 COG3484 COG3484, Predicted proteasome-type protease Posttranslational modification, protein turnover, chaperones 148545432 Common - NAD(P)(+) transhydrogenase (AB-specific) Pput_0175 166 COG3288 PntA, NAD/NADP transhydrogenase alpha subunit Energy production and conversion 148546990 Common - sulphate transporter Pput_1752 160 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 148549395 Common - hypothetical protein Pput_4189 241 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 148546912 Common - amino acid adenylation domain Pput_1674 221 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 148548618 Common - hypothetical protein Pput_3410 6 None None None 148549722 Common - methyl-accepting chemotaxis sensory transducer Pput_4520 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148546358 Common - transcriptional regulator, DeoR family Pput_1115 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 148546295 Common - N-acylglucosamine 2-epimerase Pput_1052 30 COG2942 COG2942, N-acyl-D-glucosamine 2-epimerase Carbohydrate transport and metabolism 148545371 Common - Radical SAM domain protein Pput_0114 104 COG1533 SplB, DNA repair photolyase DNA replication, recombination, and repair 148546229 Common - zinc/iron permease Pput_0986 81 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 148549286 Common - transcriptional regulator, LysR family Pput_4080 180 COG0583 LysR, Transcriptional regulator Transcription 148545405 Common - EAL domain protein Pput_0148 162 COG4943 COG4943, Predicted signal transduction protein containing sensor and EAL domains Signal transduction mechanisms 148545786 Common - NAD-dependent epimerase/dehydratase Pput_0536 235 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 148546398 Common - hypothetical protein Pput_1155 86 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 148549272 Common - two component transcriptional regulator, winged helix family Pput_4066 207 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148546088 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Pput_0844 39 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148550015 Common - LmbE family protein Pput_4813 2 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 148545506 Common - Peroxidase Pput_0250 209 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 148549731 Common - protein of unknown function DUF861, cupin_3 Pput_4529 38 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 148548212 Common - ABC-type branched-chain amino acid transport systems periplasmic component-like protein Pput_3002 30 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 148549617 Common - tryptophanyl-tRNA synthetase Pput_4413 221 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 148546801 Common - major facilitator superfamily MFS_1 Pput_1563 162 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 148548773 Common - transcriptional regulator, TetR family Pput_3566 106 COG1309 AcrR, Transcriptional regulator Transcription 148546548 Common - Oligopeptidase B Pput_1306 103 COG1770 PtrB, Protease II Amino acid transport and metabolism 148548188 Common - hypothetical protein Pput_2978 15 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148545285 Nonpathogen - hypothetical protein Pput_0027 5 None None None 148547166 Common - molybdate ABC transporter, inner membrane subunit Pput_1941 212 COG4149 ModC, ABC-type molybdate transport system, permease component Inorganic ion transport and metabolism 148546025 Common - malate:quinone oxidoreductase Pput_0779 55 COG0579 COG0579, Predicted dehydrogenase General function prediction only 148548249 Common - two component transcriptional regulator, winged helix family Pput_3039 219 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148545343 Common - SUA5/yciO/yrdC, N-terminal domain Pput_0086 237 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 148548414 Common - hypothetical protein Pput_3206 18 None None None 148547319 Common - binding-protein-dependent transport systems inner membrane component Pput_2098 184 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 148545299 Common - hypothetical protein Pput_0042 1 None None None 148547338 Common - Rhs element Vgr protein Pput_2117 55 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 148545292 Nonpathogen - hypothetical protein Pput_0035 1 None None None 148549138 Common - glycosyl transferase, family 2 Pput_3932 43 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 148550283 Common - protein of unknown function DUF1568 Pput_5083 29 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 148548320 Common - Glucose/sorbosone dehydrogenase-like protein Pput_3110 64 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 148547650 Common - hypothetical protein Pput_2430 4 None None None 148548060 Common ureA urease subunit gamma Pput_2846 96 COG0831 UreA, Urea amidohydrolase (urease) gamma subunit Amino acid transport and metabolism 148548386 Common - transcriptional regulator, LysR family Pput_3178 178 COG0583 LysR, Transcriptional regulator Transcription 148548077 Common - transcriptional regulator, LysR family Pput_2863 107 COG0583 LysR, Transcriptional regulator Transcription 148549317 Common - hypothetical protein Pput_4111 5 None None None 148545904 Common - allantoate amidohydrolase Pput_0654 86 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 148546772 Common - Cobyrinic acid a,c-diamide synthase Pput_1533 201 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 148549049 Common - aminotransferase AlaT Pput_3843 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 148550078 Common - protein of unknown function DUF971 Pput_4876 51 COG3536 COG3536, Uncharacterized protein conserved in bacteria Function unknown 148547030 Common - 6-phosphogluconate dehydrogenase-like protein Pput_1795 187 COG1023 Gnd, Predicted 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 148549338 Common - protein of unknown function DUF1654 Pput_4132 1 None None None 148548798 Common - ApbE family lipoprotein Pput_3592 137 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 148545380 Common - hypothetical protein Pput_0123 4 None None None 148549581 Common - hypothetical protein Pput_4376 151 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 148548638 Common - protein of unknown function DUF1289 Pput_3430 16 COG3313 COG3313, Predicted Fe-S protein General function prediction only 148547333 Common - (2Fe-2S)-binding domain protein Pput_2112 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 148545261 Common - DNA polymerase III subunit beta Pput_0002 215 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 148545881 Common - adenosine deaminase Pput_0631 100 COG1816 Add, Adenosine deaminase Nucleotide transport and metabolism 148546485 Common aspS aspartyl-tRNA synthetase Pput_1242 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 148548597 Common - bacteriophage Lambda NinG family protein Pput_3389 10 None None None 148546043 Common - beta-lactamase domain protein Pput_0797 216 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 148547323 Common - SH3, type 3 domain protein Pput_2102 27 COG3103 COG3103, SH3 domain protein Signal transduction mechanisms 148547824 Common - helix-turn-helix- domain containing protein, AraC type Pput_2607 103 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148549460 Common - sodium/hydrogen exchanger Pput_4254 118 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 148545834 Common - aldehyde dehydrogenase Pput_0584 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148546277 Common - transcriptional regulator, TyrR Pput_1034 170 COG3283 TyrR, Transcriptional regulator of aromatic amino acids metabolism Transcription / Amino acid transport and metabolism 148548241 Common - short-chain dehydrogenase/reductase SDR Pput_3031 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148550259 Common - SdiA-regulated domain protein Pput_5059 9 COG3204 COG3204, Uncharacterized protein conserved in bacteria Function unknown 148549814 Common - N-6 DNA methylase Pput_4612 161 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 148545443 Common - ABC transporter related Pput_0186 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 148548924 Common - SMC domain protein Pput_3718 102 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 148547202 Common - transcriptional regulator, LysR family Pput_1979 141 COG0583 LysR, Transcriptional regulator Transcription 148548367 Common - type I secretion outer membrane protein, TolC family Pput_3157 142 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148547956 Common - protein of unknown function DUF125, transmembrane Pput_2740 73 COG1814 COG1814, Uncharacterized membrane protein Function unknown 148545387 Common - binding-protein-dependent transport systems inner membrane component Pput_0130 111 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 148549299 Common - hypothetical protein Pput_4093 1 None None None 148547091 Common - Endoribonuclease L-PSP Pput_1859 26 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 148545933 Nonpathogen - hypothetical protein Pput_0686 1 None None None 148549513 Common - 5'-Nucleotidase domain protein Pput_4307 130 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 148546985 Common - YhhN family protein Pput_1747 24 COG3714 COG3714, Predicted membrane protein Function unknown 148549175 Common - short chain dehydrogenase Pput_3969 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 148546081 Common - Cytochrome o ubiquinol oxidase, subunit III Pput_0837 158 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 148546694 Common - putative transcriptional regulator, AsnC family Pput_1454 157 COG1522 Lrp, Transcriptional regulators Transcription 148548533 Common - uncharacterised conserved protein UCP030820 Pput_3325 53 COG3749 COG3749, Uncharacterized protein conserved in bacteria Function unknown 148548803 Common - beta-hexosaminidase Pput_3597 180 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 148545996 Common - secretion protein HlyD family protein Pput_0750 142 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 148548696 Common - transcriptional regulator, LysR family Pput_3488 148 COG0583 LysR, Transcriptional regulator Transcription 148550108 Common - histidine ammonia-lyase Pput_4906 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 148546857 Common - hydrolase of the alpha/beta-hydrolase fold-like protein Pput_1619 37 COG3571 COG3571, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 148548053 Common - phosphatidylinositol-specific phospholipase C, X region Pput_2839 4 None None None 148550181 Common - protein of unknown function DUF423 Pput_4979 63 COG2363 COG2363, Uncharacterized small membrane protein Function unknown 148548956 Common - response regulator receiver modulated diguanylate phosphodiesterase Pput_3750 180 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 148550485 Common - hypothetical protein Pput_5285 2 None None None 148549867 Common - CBS domain containing protein Pput_4665 217 COG4535 CorC, Putative Mg2+ and Co2+ transporter CorC Inorganic ion transport and metabolism 148550420 Common - putative signal transduction protein Pput_5220 60 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 148550062 Common - channel protein, hemolysin III family Pput_4860 119 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 148545460 Common - hypothetical protein Pput_0203 8 None None None 148549015 Common - ribonuclease, Rne/Rng family Pput_3809 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 148549359 Common - 4Fe-4S ferredoxin, iron-sulfur binding domain protein Pput_4153 135 COG1146 COG1146, Ferredoxin Energy production and conversion 148549681 Common - maleylacetoacetate isomerase Pput_4479 104 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148545578 Common - protein of unknown function DUF849 Pput_0323 61 COG3246 COG3246, Uncharacterized conserved protein Function unknown 148548042 Common - methyl-accepting chemotaxis sensory transducer Pput_2828 152 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148550166 Common - TM2 domain containing protein+B7201 Pput_4964 22 COG2314 XynA, Predicted membrane protein Function unknown 148548390 Common - major facilitator superfamily MFS_1 Pput_3182 199 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148546825 Common - guanine deaminase Pput_1587 155 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 148547902 Common - RNA polymerase sigma factor Pput_2686 127 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 148546757 Common - hypothetical protein Pput_1518 3 None None None 148545618 Common - dihydrolipoamide acetyltransferase Pput_0363 201 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 148548754 Common - hypothetical protein Pput_3547 1 None None None 148545497 Common - polar amino acid ABC transporter, inner membrane subunit Pput_0241 174 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 148549370 Common - Septum formation initiator Pput_4164 64 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 148545837 Common - aromatic acid decarboxylase Pput_0587 152 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 148547838 Common - uncharacterised conserved protein UCP028301 Pput_2622 50 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 148547286 Common - transcriptional regulator, AraC family Pput_2064 108 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148546704 Common flgC flagellar basal body rod protein FlgC Pput_1465 124 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 148547209 Common - putative transcriptional regulator, GntR family Pput_1987 214 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 148547478 Common - hypothetical protein Pput_2257 30 None None None 148548628 Common - hypothetical protein Pput_3420 1 None None None 148547773 Common - hypothetical protein Pput_2556 12 None None None 148547882 Common - exporter of the RND superfamily-like protein Pput_2666 95 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 148545671 Common - transposase IS3/IS911 family protein Pput_0419 19 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 148545571 Common - Substrate-binding region of ABC-type glycine betaine transport system Pput_0316 59 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 148549988 Common - Uncharacterized membrane protein affecting hemolysin expression Pput_4786 1 COG3726 AhpA, Uncharacterized membrane protein affecting hemolysin expression General function prediction only 148548515 Common - Lysine exporter protein (LYSE/YGGA) Pput_3307 22 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148548876 Common - GCN5-related N-acetyltransferase Pput_3670 62 COG0456 RimI, Acetyltransferases General function prediction only 148546105 Common - Endoribonuclease L-PSP Pput_0861 11 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 148550141 Common - potassium/proton antiporter Pput_4939 152 COG3263 COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain Inorganic ion transport and metabolism 148550196 Common - aldehyde dehydrogenase Pput_4994 219 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148548181 Common - short-chain dehydrogenase/reductase SDR Pput_2971 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148548446 Common - putative PAS/PAC sensor protein Pput_3238 179 COG3604 FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains Transcription / Signal transduction mechanisms 148546244 Common - hypothetical protein Pput_1001 4 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 148548130 Common - hypothetical protein Pput_2919 15 None None None 148550340 Common - HAD-superfamily hydrolase, subfamily IA, variant 1 Pput_5140 145 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 148550249 Common - prolipoprotein diacylglyceryl transferase Pput_5049 209 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 148548496 Common - 3-dehydroquinate dehydratase Pput_3288 170 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 148549463 Common trmD tRNA (guanine-N(1)-)-methyltransferase Pput_4257 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 148550146 Common - transcriptional regulator, LysR family Pput_4944 192 COG0583 LysR, Transcriptional regulator Transcription 148548154 Common - hypothetical protein Pput_2944 19 None None None 148545395 Common - homoserine kinase Pput_0138 61 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 148545865 Common - hypothetical protein Pput_0615 15 None None None 148547088 Common - protein of unknown function UPF0153 Pput_1855 2 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 148549161 Common - DSBA oxidoreductase Pput_3955 33 COG3531 COG3531, Predicted protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 148549774 Common - transport-associated Pput_4572 32 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 148548264 Common - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Pput_3054 146 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 148550497 Common - F0F1 ATP synthase subunit alpha Pput_5297 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 148547213 Common - putative phage repressor Pput_1991 23 COG2932 COG2932, Predicted transcriptional regulator Transcription 148548505 Common - hypothetical protein Pput_3297 62 COG3220 COG3220, Uncharacterized protein conserved in bacteria Function unknown 148546018 Common hemH ferrochelatase Pput_0772 157 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 148549586 Common lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase Pput_4381 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 148548651 Common cysB transcriptional regulator CysB Pput_3443 188 COG0583 LysR, Transcriptional regulator Transcription 148546309 Common - peptidase M23B Pput_1066 191 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 148549590 Common ddl D-alanine--D-alanine ligase Pput_4385 227 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 148546495 Common - Peptidoglycan-associated lipoprotein Pput_1252 159 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 148547133 Common - Citrate transporter Pput_1903 141 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 148549148 Common rpsA 30S ribosomal protein S1 Pput_3942 222 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 148547007 Common - Sigma-70, region 4 type 2 Pput_1770 4 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 148547588 Common - hypothetical protein Pput_2367 2 None None None 148547529 Common - Radical SAM domain protein Pput_2308 106 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 148547649 Common - Alcohol dehydrogenase GroES domain protein Pput_2429 204 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 148548527 Common - fatty acid cistrans isomerase Pput_3319 15 None None None 148546894 Common - putative transcriptional regulator, GntR family Pput_1656 222 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 148549000 Common - DNA polymerase III subunit delta' Pput_3794 217 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 148549488 Common - hypothetical protein Pput_4282 1 None None None 148546555 Common - Allophanate hydrolase subunit 1 Pput_1313 99 COG2049 DUR1, Allophanate hydrolase subunit 1 Amino acid transport and metabolism 148545643 Common - biotin synthase Pput_0388 183 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 148549881 Common - rare lipoprotein A Pput_4679 137 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 148547367 Common - GCN5-related N-acetyltransferase Pput_2146 20 COG0456 RimI, Acetyltransferases General function prediction only 148546954 Common - binding-protein-dependent transport systems inner membrane component Pput_1716 221 COG4239 COG4239, ABC-type uncharacterized transport system, permease component General function prediction only 148546351 Common - integral membrane sensor signal transduction histidine kinase Pput_1108 192 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 148549920 Common - D-alanine/D-serine/glycine permease Pput_4718 181 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 148548781 Common - hypothetical protein Pput_3575 21 None None None 148546509 Common - Glycine cleavage system regulatory protein-like protein Pput_1266 27 COG2716 GcvR, Glycine cleavage system regulatory protein Amino acid transport and metabolism 148549934 Common - alpha/beta hydrolase fold Pput_4732 27 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 148549388 Common - undecaprenyl diphosphate synthase Pput_4182 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 148549890 Common - phosphoesterase, PA-phosphatase related Pput_4688 117 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 148549917 Common - hypothetical protein Pput_4715 1 None None None 148549188 Common - VacJ family lipoprotein Pput_3982 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 148548922 Common - hypothetical protein Pput_3716 7 None None None 148549756 Common - Rieske (2Fe-2S) domain protein Pput_4554 40 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 148549229 Common - transcriptional regulator, GntR family Pput_4023 118 COG2188 PhnF, Transcriptional regulators Transcription 148549528 Common - metabolite/H+ symporter, major facilitator superfamily (MFS) Pput_4323 151 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148545901 Common - Tfp pilus assembly protein PilE-like protein Pput_0651 41 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 148546407 Common - OmpA/MotB domain protein Pput_1164 121 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 148549209 Common - putative transcriptional regulator, XRE family Pput_4003 3 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 148546901 Common sdhA succinate dehydrogenase flavoprotein subunit Pput_1663 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 148547076 Common - uracil-xanthine permease Pput_1841 127 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 148548828 Common - lipid A ABC exporter family, fused ATPase and inner membrane subunits Pput_3622 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 148549599 Common - cell division protein FtsL Pput_4394 18 COG3116 FtsL, Cell division protein Cell division and chromosome partitioning 148548564 Nonpathogen - hypothetical protein Pput_3356 1 None None None 148546744 Common - Hpt protein Pput_1505 6 COG2198 ArcB, FOG: HPt domain Signal transduction mechanisms 148547792 Common - glycosyl transferase, group 1 Pput_2575 200 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 148547896 Nonpathogen - hypothetical protein Pput_2680 1 None None None 148546435 Common - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Pput_1192 189 COG0388 COG0388, Predicted amidohydrolase General function prediction only 148547285 Common - major facilitator superfamily MFS_1 Pput_2063 123 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148545741 Common rplW 50S ribosomal protein L23 Pput_0489 216 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 148545690 Common - Organic solvent tolerance protein Pput_0438 125 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 148550268 Common - Lysophospholipase-like protein Pput_5068 45 COG2267 PldB, Lysophospholipase Lipid metabolism 148547690 Common - transcriptional regulator, PaaX family Pput_2473 33 COG3327 PaaX, Phenylacetic acid-responsive transcriptional repressor Transcription 148548330 Common - fumarate reductase/succinate dehydrogenase flavoprotein domain protein Pput_3120 67 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 148545486 Common - putative signal transduction protein Pput_0230 142 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 148547655 Common - (2Fe-2S)-binding domain protein Pput_2435 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 148550200 Common - 4Fe-4S ferredoxin, iron-sulfur binding domain protein Pput_4998 121 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 148546473 Common - virulence factor family protein Pput_1230 19 COG3946 VirJ, Type IV secretory pathway, VirJ component Intracellular trafficking and secretion 148545947 Common - Bile acid:sodium symporter Pput_0701 33 COG0798 ACR3, Arsenite efflux pump ACR3 and related permeases Inorganic ion transport and metabolism 148550178 Common trmB tRNA (guanine-N(7))-methyltransferase Pput_4976 177 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 148549738 Common - exodeoxyribonuclease V, alpha subunit Pput_4536 120 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 148546323 Common - Sec-independent protein translocase, TatC subunit Pput_1080 200 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 148550113 Common - Lipocalin family protein Pput_4911 72 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 148547987 Common - transcriptional regulator, LysR family Pput_2773 191 COG0583 LysR, Transcriptional regulator Transcription 148548467 Common - transcriptional regulator, LysR family Pput_3259 129 COG0583 LysR, Transcriptional regulator Transcription 148549939 Common - transcriptional regulator, TetR family Pput_4737 40 COG1309 AcrR, Transcriptional regulator Transcription 148548460 Common - protein of unknown function DUF480 Pput_3252 41 COG3132 COG3132, Uncharacterized protein conserved in bacteria Function unknown 148545654 Common - protein of unknown function UPF0057 Pput_0399 34 COG0401 COG0401, Uncharacterized homolog of Blt101 Function unknown 148549906 Common - precorrin-3B C17-methyltransferase Pput_4704 117 COG1010 CobJ, Precorrin-3B methylase Coenzyme metabolism 148550446 Common - transcriptional regulator, LysR family Pput_5246 179 COG0583 LysR, Transcriptional regulator Transcription 148546941 Common - alpha/beta hydrolase fold Pput_1703 143 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148548170 Common - hypothetical protein Pput_2960 4 None None None 148549658 Common - UspA domain protein Pput_4456 2 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 148548836 Common - hypothetical protein Pput_3630 1 None None None 148547242 Common - hypothetical protein Pput_2020 3 None None None 148545579 Common - Substrate-binding region of ABC-type glycine betaine transport system Pput_0324 61 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 148549803 Common - L-lactate transport Pput_4601 104 COG1620 LldP, L-lactate permease Energy production and conversion 148546138 Common - Ornithine decarboxylase Pput_0894 217 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 148547864 Common - binding-protein-dependent transport systems inner membrane component Pput_2648 220 COG4239 COG4239, ABC-type uncharacterized transport system, permease component General function prediction only 148545924 Common - type II secretion system protein Pput_0674 142 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 148550171 Common - protein of unknown function YGGT Pput_4969 120 COG0762 COG0762, Predicted integral membrane protein Function unknown 148547089 Common - helix-turn-helix- domain containing protein, AraC type Pput_1857 133 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148547768 Common benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase Pput_2551 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 148547932 Common - RimK domain protein ATP-grasp Pput_2716 50 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 148547939 Common - helix-turn-helix- domain containing protein, AraC type Pput_2723 56 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148549522 Common - hypothetical protein Pput_4317 14 None None None 148549887 Common nadD nicotinic acid mononucleotide adenyltransferase Pput_4685 180 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 148547486 Common - ABC transporter related Pput_2265 239 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 148547755 Common - Glycerate kinase Pput_2538 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 148549037 Common - hypothetical protein Pput_3831 2 None None None 148548351 Common - Paraquat-inducible protein A Pput_3141 54 COG2995 PqiA, Uncharacterized paraquat-inducible protein A Function unknown 148548684 Common - binding-protein-dependent transport systems inner membrane component Pput_3476 147 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 148545607 Common - hypothetical protein Pput_0352 4 None None None 148548344 Common - Haem oxygenase Pput_3134 14 COG3230 HemO, Heme oxygenase Inorganic ion transport and metabolism 148547257 Common - multi-sensor hybrid histidine kinase Pput_2035 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148545816 Common - putative esterase Pput_0566 34 COG2819 COG2819, Predicted hydrolase of the alpha/beta superfamily General function prediction only 148545567 Common - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase Pput_0312 214 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 148548049 Common - hypothetical protein Pput_2835 1 None None None 148545470 Common - anti-RNA polymerase sigma 70 factor Pput_0213 24 COG3160 Rsd, Regulator of sigma D Transcription 148547195 Common - hypothetical protein Pput_1970 11 None None None 148545627 Common - hypothetical protein Pput_0372 6 None None None 148548437 Common - hypothetical protein Pput_3229 1 None None None 148548964 Common - hypothetical protein Pput_3758 13 COG5373 COG5373, Predicted membrane protein Function unknown 148547386 Common - phosphate ABC transporter, inner membrane subunit PstC Pput_2165 225 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 148549434 Common - response regulator receiver modulated diguanylate cyclase Pput_4228 215 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 148550124 Common - signal transduction histidine kinase, nitrogen specific, NtrB Pput_4922 219 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 148548714 Common - transcriptional regulator, AraC family Pput_3506 113 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148545529 Common - hypothetical protein Pput_0273 52 COG1652 XkdP, Uncharacterized protein containing LysM domain Function unknown 148547204 Common - luciferase family protein Pput_1981 71 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 148547452 Common - Cytochrome c oxidase cbb3 type, accessory protein FixG Pput_2231 77 COG0348 NapH, Polyferredoxin Energy production and conversion 148546192 Common - protein of unknown function DUF1111 Pput_0949 49 COG3488 COG3488, Predicted thiol oxidoreductase Energy production and conversion 148547422 Common - flavoprotein involved in K+ transport-like protein Pput_2201 68 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 148550252 Common - PTSINtr with GAF domain, PtsP Pput_5052 235 COG3605 PtsP, Signal transduction protein containing GAF and PtsI domains Signal transduction mechanisms 148549269 Common rumA 23S rRNA 5-methyluridine methyltransferase Pput_4063 198 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 148548232 Common - deoxyribodipyrimidine photolyase-related protein Pput_3022 59 COG3046 COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase General function prediction only 148545623 Common - glycosyl transferase, group 1 Pput_0368 106 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 148549847 Common - putative periplasmic ligand-binding sensor protein Pput_4645 5 COG3416 COG3416, Uncharacterized protein conserved in bacteria Function unknown 148548721 Common - putative monovalent cation/H+ antiporter subunit E Pput_3513 47 COG1863 MnhE, Multisubunit Na+/H+ antiporter, MnhE subunit Inorganic ion transport and metabolism 148545728 Common rplK 50S ribosomal protein L11 Pput_0476 246 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 148549200 Common - type I phosphodiesterase/nucleotide pyrophosphatase Pput_3994 18 COG1524 COG1524, Uncharacterized proteins of the AP superfamily General function prediction only 148548911 Common - hypothetical protein Pput_3705 137 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 148548840 Common - protein of unknown function DUF883, ElaB Pput_3634 11 COG4575 ElaB, Uncharacterized conserved protein Function unknown 148549966 Common - methyl-accepting chemotaxis sensory transducer Pput_4764 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148546666 Common - transposase, IS111A/IS1328/IS1533 Pput_1426 59 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 148548817 Common - MOSC domain containing protein Pput_3611 65 COG3217 COG3217, Uncharacterized Fe-S protein General function prediction only 148545265 Common - Integrase, catalytic region Pput_0006 59 None None None 148546383 Common dcd deoxycytidine triphosphate deaminase Pput_1140 149 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 148545784 Common - hypothetical protein Pput_0532 2 None None None 148547391 Common - hypothetical protein Pput_2170 14 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 148548178 Common - exporter of the RND superfamily-like protein Pput_2968 47 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 148545482 Common - CBS domain containing protein Pput_0225 192 COG0517 COG0517, FOG: CBS domain General function prediction only 148549292 Common - conserved hypothetical protein 730 Pput_4086 101 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 148550045 Common - cytochrome c, class II Pput_4843 18 COG3909 COG3909, Cytochrome c556 Energy production and conversion 148550322 Common - UbiD family decarboxylase Pput_5122 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 148548484 Common - membrane protein-like protein Pput_3276 30 COG3503 COG3503, Predicted membrane protein Function unknown 148547360 Common - cellulose synthase subunit BcsC Pput_2139 21 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 148546908 Common - branched-chain amino acid transport system II carrier protein Pput_1670 50 COG1114 BrnQ, Branched-chain amino acid permeases Amino acid transport and metabolism 148548849 Common - putative RNA methylase Pput_3643 162 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 148550210 Common - extracellular solute-binding protein, family 1 Pput_5008 105 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 148550326 Common - polyphosphate kinase Pput_5126 161 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 148550479 Common - transcriptional regulator, LysR family Pput_5279 162 COG0583 LysR, Transcriptional regulator Transcription 148548742 Common - membrane protein-like protein Pput_3535 72 COG1238 COG1238, Predicted membrane protein Function unknown 148548669 Common - Acyl-CoA thioesterase-like protein Pput_3461 18 COG1946 TesB, Acyl-CoA thioesterase Lipid metabolism 148545755 Common rplR 50S ribosomal protein L18 Pput_0503 215 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 148549649 Common - hypothetical protein Pput_4447 4 None None None 148549076 Common - protein of unknown function DUF1260 Pput_3870 3 None None None 148549492 Common recO DNA repair protein RecO Pput_4286 62 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 148547704 Common - acetate permease Pput_2487 172 COG4147 DhlC, Predicted symporter General function prediction only 148547247 Common - transcriptional regulator, GntR family Pput_2025 123 COG1802 GntR, Transcriptional regulators Transcription 148550458 Common - transcriptional regulator, RpiR family Pput_5258 87 COG1737 RpiR, Transcriptional regulators Transcription 148549042 Common - Fimbrial protein-like protein Pput_3836 14 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 148549860 Common - phosphomethylpyrimidine kinase Pput_4658 218 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 148546961 Common rnhA ribonuclease H Pput_1723 178 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 148545804 Common - thiamine monophosphate kinase Pput_0554 183 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 148549893 Common - LrgA family protein Pput_4691 1 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 148547067 Common - CrcB protein Pput_1832 126 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 148547996 Common - hypothetical protein Pput_2782 12 None None None 148550226 Common - pyruvate carboxyltransferase Pput_5024 199 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 148548075 Common - hypothetical protein Pput_2861 1 None None None 148546379 Common - NADH:ubiquinone oxidoreductase subunit RnfA-like protein Pput_1136 61 COG4657 RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA Energy production and conversion 148546530 Common - putative PAS/PAC sensor protein Pput_1287 138 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148547744 Common - N-isopropylammelide isopropylaminohydrolase Pput_2527 71 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 148548003 Common - UDP-2,3-diacylglucosamine hydrolase Pput_2789 80 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 148547514 Common - type II and III secretion system protein Pput_2293 137 COG4796 HofQ, Type II secretory pathway, component HofQ Intracellular trafficking and secretion 148545679 Common - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Pput_0427 129 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 148545517 Common ompR osmolarity response regulator Pput_0261 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148550451 Common - putative transcriptional regulator, GntR family Pput_5251 209 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 148546262 Common - permease YjgP/YjgQ family protein Pput_1019 74 COG0795 COG0795, Predicted permeases General function prediction only 148547799 Nonpathogen - hypothetical protein Pput_2582 1 None None None 148549499 Common - anti sigma-E protein, RseA Pput_4293 5 COG3073 RseA, Negative regulator of sigma E activity Signal transduction mechanisms 148547457 Common - transcriptional regulator, AraC family Pput_2236 98 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148550207 Common - Dihydrofolate reductase Pput_5005 147 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 148550021 Common putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase Pput_4819 220 COG4230 COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase Energy production and conversion 148546541 Common - protein of unknown function DUF709 Pput_1298 35 COG3100 COG3100, Uncharacterized protein conserved in bacteria Function unknown 148549858 Common - acyl-CoA dehydrogenase domain protein Pput_4656 136 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148547060 Common - ATP-dependent Clp protease, ATP-binding subunit clpA Pput_1825 217 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 148546595 Common - NAD(P)H dehydrogenase (quinone) Pput_1353 100 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 148548145 Common - hypothetical protein Pput_2935 21 None None None 148546636 Common - transcriptional regulator, MarR family Pput_1396 94 COG1846 MarR, Transcriptional regulators Transcription 148550285 Common - binding-protein-dependent transport systems inner membrane component Pput_5085 192 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 148545825 Nonpathogen - hypothetical protein Pput_0575 1 None None None 148549035 Common - YD repeat-containing protein Pput_3829 39 None None None 148548083 Nonpathogen - hypothetical protein Pput_2870 1 None None None 148545978 Common - Lysine exporter protein (LYSE/YGGA) Pput_0732 108 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148548011 Common - protein of unknown function DUF490 Pput_2797 103 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 148545621 Common - lipopolysaccharide heptosyltransferase II Pput_0366 109 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 148547298 Common - putative transcriptional regulator, AsnC family Pput_2076 150 COG1522 Lrp, Transcriptional regulators Transcription 148545605 Common - Formaldehyde dehydrogenase, glutathione-independent Pput_0350 190 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 148548712 Common - hypothetical protein Pput_3504 6 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 148547605 Common - hypothetical protein Pput_2384 1 None None None 148548902 Common - beta-lactamase domain protein Pput_3696 45 COG2015 COG2015, Alkyl sulfatase and related hydrolases Secondary metabolites biosynthesis, transport, and catabolism 148545794 Common - hypothetical protein Pput_0544 1 None None None 148550263 Common - hypothetical protein Pput_5063 18 None None None 148549227 Common - amidohydrolase 2 Pput_4021 43 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 148545959 Common - hypothetical protein Pput_0713 55 COG2862 COG2862, Predicted membrane protein Function unknown 148547819 Common - HAD-superfamily hydrolase, subfamily IA, variant 3 Pput_2602 149 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 148547215 Common - hypothetical protein Pput_1993 1 None None None 148548500 Common - two component transcriptional regulator, winged helix family Pput_3292 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148547772 Common - transcriptional regulator, AraC family Pput_2555 73 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 148547042 Common nhaB sodium/proton antiporter Pput_1807 25 COG3067 NhaB, Na+/H+ antiporter Inorganic ion transport and metabolism 148549259 Common - phosphoribosylaminoimidazole synthetase Pput_4053 230 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 148547953 Common - hypothetical protein Pput_2737 14 COG3656 COG3656, Predicted periplasmic protein Function unknown 148546535 Common - oxidoreductase alpha (molybdopterin) subunit Pput_1292 172 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 148546684 Common - magnesium transporter Pput_1444 176 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 148548159 Nonpathogen - hypothetical protein Pput_2949 1 None None None 148549320 Nonpathogen - hypothetical protein Pput_4114 1 None None None 148549414 Common - transcriptional regulator, TetR family Pput_4208 101 COG1309 AcrR, Transcriptional regulator Transcription 148546979 Common - NADH dehydrogenase subunit G Pput_1741 180 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 148549531 Common - hypothetical protein Pput_4326 1 None None None 148548283 Common - hydroxymethylglutaryl-CoA reductase, degradative Pput_3073 56 COG1257 HMG1, Hydroxymethylglutaryl-CoA reductase Lipid metabolism 148546145 Common - binding-protein-dependent transport systems inner membrane component Pput_0901 174 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 148550315 Common - ABC transporter related Pput_5115 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 148549748 Common - hypothetical protein Pput_4546 8 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 148547935 Common - Alcohol dehydrogenase. zinc-binding type 1 Pput_2719 155 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 148550131 Common - phosphoglyceromutase Pput_4929 125 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 148547532 Common - acyl-CoA synthetase Pput_2311 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148545355 Common - tryptophan synthase subunit beta Pput_0098 226 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 148546284 Common - protein of unknown function DUF454 Pput_1041 81 COG2832 COG2832, Uncharacterized protein conserved in bacteria Function unknown 148550215 Common - putative transcriptional regulator, MerR family Pput_5013 138 COG0789 SoxR, Predicted transcriptional regulators Transcription 148549438 Common - Protein-glutamate O-methyltransferase Pput_4232 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 148545972 Common - hypothetical protein Pput_0726 7 None None None 148547759 Common - aldo/keto reductase Pput_2542 201 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 148546701 Common - putative CheW protein Pput_1461 182 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 148548096 Common - membrane protein involved in aromatic hydrocarbon degradation Pput_2883 50 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 148547085 Common - transcriptional regulator, LysR family Pput_1852 175 COG0583 LysR, Transcriptional regulator Transcription 148547732 Common - Bile acid:sodium symporter Pput_2515 85 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 148547126 Common - isochorismatase hydrolase Pput_1896 105 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 148550055 Common - DEAD/DEAH box helicase domain protein Pput_4853 238 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 148545967 Common rpmA 50S ribosomal protein L27 Pput_0721 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 148549329 Nonpathogen - hypothetical protein Pput_4123 1 None None None 148550333 Common - protein of unknown function DUF1289 Pput_5133 10 COG3313 COG3313, Predicted Fe-S protein General function prediction only 148546360 Common - MIP family channel protein Pput_1117 134 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 148547500 Common - acyl-CoA dehydrogenase domain protein Pput_2279 166 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148546795 Common - D-amino-acid dehydrogenase Pput_1556 109 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 148547916 Common - ThiJ/PfpI domain protein Pput_2700 83 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 148547884 Common - protein of unknown function DUF1329 Pput_2668 17 None None None 148549194 Common - pseudouridine synthase Pput_3988 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 148546201 Common - hypothetical protein Pput_0958 1 None None None 148545583 Common - protein of unknown function DUF1311 Pput_0328 10 COG3755 COG3755, Uncharacterized protein conserved in bacteria Function unknown 148549619 Common - protein of unknown function DUF1043 Pput_4415 9 COG3105 COG3105, Uncharacterized protein conserved in bacteria Function unknown 148548968 Common - Colicin V production protein Pput_3762 87 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 148548763 Common - transcriptional regulator, XRE family Pput_3556 62 COG1396 HipB, Predicted transcriptional regulators Transcription 148546948 Common - osmosensitive K+ channel signal transduction histidine kinase Pput_1710 217 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 148548122 Nonpathogen - hypothetical protein Pput_2911 1 None None None 148547402 Common - Malate/L-lactate dehydrogenase Pput_2181 67 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 148548387 Common - hypothetical protein Pput_3179 1 None None None 148549800 Common - cyclase/dehydrase Pput_4598 102 COG2867 COG2867, Oligoketide cyclase/lipid transport protein Lipid metabolism 148550403 Common - hypothetical protein Pput_5203 137 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 148546870 Common - Gluconate 2-dehydrogenase (acceptor) Pput_1632 57 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 148550385 Common - putative transcriptional regulator, GntR family Pput_5185 230 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 148546608 Common - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pput_1368 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 148548172 Common - Relaxase Pput_2962 28 None None None 148549372 Common - 2-dehydro-3-deoxyphosphooctonate aldolase Pput_4166 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 148550136 Common - choline/carnitine/betaine transporter Pput_4934 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 148546339 Common - hypothetical protein Pput_1096 1 None None None 148546417 Common - inner-membrane translocator Pput_1174 150 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 148546755 Common - D-alanine--D-alanine ligase Pput_1516 217 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 148549152 Common - phosphoserine aminotransferase Pput_3946 114 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 148546565 Common - protein of unknown function DUF6, transmembrane Pput_1323 67 COG2962 RarD, Predicted permeases General function prediction only 148545927 Common - hypothetical protein Pput_0680 3 None None None 148548404 Common - TonB-dependent siderophore receptor Pput_3196 118 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148549862 Common - glutamate-1-semialdehyde aminotransferase Pput_4660 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 148545413 Common - nucleoside recognition domain protein Pput_0156 39 COG2715 SpmA, Uncharacterized membrane protein, required for spore maturation in B.subtilis. General function prediction only 148548129 Common - Domain of unknown function DUF1845 Pput_2918 22 None None None 148546231 Common - hypothetical protein Pput_0988 140 COG1660 COG1660, Predicted P-loop-containing kinase General function prediction only 148549307 Common - hypothetical protein Pput_4101 2 None None None 148546662 Common - hypothetical protein Pput_1422 1 None None None 148548001 Common - glutaminyl-tRNA synthetase Pput_2787 245 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 148547630 Common - diguanylate cyclase Pput_2409 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 148550098 Common - ABC transporter related Pput_4896 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 148547616 Common - hypothetical protein Pput_2395 7 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 148548058 Common ureC urease subunit alpha Pput_2844 96 COG0804 UreC, Urea amidohydrolase (urease) alpha subunit Amino acid transport and metabolism 148546581 Common - acyl-CoA synthetase Pput_1339 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148546711 Common flgI flagellar basal body P-ring protein Pput_1472 105 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 148545688 Common pdxA 4-hydroxythreonine-4-phosphate dehydrogenase Pput_0436 159 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 148547684 Common - beta-lactamase domain protein Pput_2467 133 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 148548882 Common - drug resistance transporter, EmrB/QacA subfamily Pput_3676 205 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148548660 Common - ABC transporter related Pput_3452 249 COG4181 COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 148548698 Common - Uncharacterized membrane protein Pput_3490 20 COG3949 COG3949, Uncharacterized membrane protein Function unknown 148550433 Common - phosphate uptake regulator, PhoU Pput_5233 194 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 148547446 Common - secretion protein HlyD family protein Pput_2225 161 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 148548324 Nonpathogen - hypothetical protein Pput_3114 1 None None None 148549769 Common - acetyl-CoA synthetase Pput_4567 212 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 148550105 Common - N-formylglutamate amidohydrolase Pput_4903 57 COG3741 HutG, N-formylglutamate amidohydrolase Amino acid transport and metabolism 148548592 Nonpathogen - hypothetical protein Pput_3384 1 None None None 148548856 Common - uroporphyrin-III C-methyltransferase Pput_3650 203 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 148545914 Common - protein of unknown function DUF152 Pput_0664 179 COG1496 COG1496, Uncharacterized conserved protein Function unknown 148546833 Common - putative transcriptional regulator, MerR family Pput_1595 92 COG0789 SoxR, Predicted transcriptional regulators Transcription 148547306 Common - aldehyde dehydrogenase Pput_2084 222 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148550237 Common - hypothetical protein Pput_5037 4 None None None 148545308 Common - phosphate-selective porin O and P Pput_0051 24 COG3746 OprP, Phosphate-selective porin Inorganic ion transport and metabolism 148546208 Nonpathogen - hypothetical protein Pput_0965 1 None None None 148547157 Common - alcohol dehydrogenase Pput_1932 212 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 148550396 Common dut deoxyuridine 5'-triphosphate nucleotidohydrolase Pput_5196 180 COG0756 Dut, dUTPase Nucleotide transport and metabolism 148547094 Common - hypothetical protein Pput_1862 8 None None None 148549279 Common - flavodoxin/nitric oxide synthase Pput_4073 117 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 148546843 Common - hypothetical protein Pput_1605 31 COG2836 COG2836, Uncharacterized conserved protein Function unknown 148545705 Common - anthranilate synthase component II Pput_0453 236 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 148546475 Common - DNA polymerase IV Pput_1232 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 148550407 Common - peptidase C26 Pput_5207 123 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 148545330 Common - General substrate transporter Pput_0073 130 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148550289 Common - putative aminotransferase Pput_5089 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 148549536 Common - transcriptional regulator, LysR family Pput_4331 170 COG0583 LysR, Transcriptional regulator Transcription 148549554 Common - hypothetical protein Pput_4349 1 None None None 148547150 Common - ERF family protein Pput_1923 5 None None None 148548273 Common - Endoribonuclease L-PSP Pput_3063 162 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 148548471 Common - dihydropteridine reductase Pput_3263 68 COG0778 NfnB, Nitroreductase Energy production and conversion 148550377 Common - Cytochrome c5-like protein Pput_5177 43 COG3245 CycB, Cytochrome c5 Energy production and conversion 148546400 Common - OmpA/MotB domain protein Pput_1157 163 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 148545317 Common - outer membrane porin Pput_0060 9 None None None 148549058 Common - protein of unknown function DUF81 Pput_3852 13 COG0730 COG0730, Predicted permeases General function prediction only 148545652 Common - transcriptional regulator, LysR family Pput_0397 191 COG0583 LysR, Transcriptional regulator Transcription 148547965 Common - Helix-turn-helix, type 11 domain protein Pput_2749 77 COG2378 COG2378, Predicted transcriptional regulator Transcription 148549666 Common - helix-turn-helix- domain containing protein, AraC type Pput_4464 149 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148549577 Common - nucleotide-binding protein Pput_4372 107 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 148550353 Common - isochorismatase hydrolase Pput_5153 79 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 148546877 Common - integral membrane sensor signal transduction histidine kinase Pput_1639 199 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148548477 Common - Alcohol dehydrogenase GroES domain protein Pput_3269 181 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 148545831 Common - ethanolamine ammonia-lyase small subunit Pput_0581 54 COG4302 EutC, Ethanolamine ammonia-lyase, small subunit Amino acid transport and metabolism 148548012 Common - surface antigen (D15) Pput_2798 141 COG0729 COG0729, Outer membrane protein Cell envelope biogenesis, outer membrane 148549790 Common greA transcription elongation factor GreA Pput_4588 204 COG0782 GreA, Transcription elongation factor Transcription 148547104 Common - SMP-30/Gluconolaconase/LRE domain protein Pput_1874 63 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 148546410 Common - 17 kDa surface antigen Pput_1167 21 COG3133 SlyB, Outer membrane lipoprotein Cell envelope biogenesis, outer membrane 148545886 Common - beta alanine--pyruvate transaminase Pput_0636 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 148547329 Common - Lysine exporter protein (LYSE/YGGA) Pput_2108 116 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148547668 Nonpathogen - phosphoribosyltransferase Pput_2450 4 COG2065 PyrR, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase Nucleotide transport and metabolism 148548646 Common - protein of unknown function DUF785 Pput_3438 32 COG4067 COG4067, Uncharacterized protein conserved in archaea Posttranslational modification, protein turnover, chaperones 148550370 Common - protein of unknown function DUF1338 Pput_5170 23 COG5383 COG5383, Uncharacterized protein conserved in bacteria Function unknown 148548617 Nonpathogen - hypothetical protein Pput_3409 1 None None None 148548637 Nonpathogen - hypothetical protein Pput_3429 1 None None None 148550076 Common - ATP-dependent protease peptidase subunit Pput_4874 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 148546647 Common - protein of unknown function, Spy-related Pput_1407 2 COG3678 CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism 148549051 Common - thiopurine S-methyltransferase Pput_3845 33 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 148549816 Common - EcoEI R, C-terminal domain protein Pput_4614 144 COG4096 HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 148549097 Common - benzoate transporter Pput_3891 59 COG3135 BenE, Uncharacterized protein involved in benzoate metabolism Secondary metabolites biosynthesis, transport, and catabolism 148547779 Common - transcriptional regulator, LysR family Pput_2562 191 COG0583 LysR, Transcriptional regulator Transcription 148549822 Common - ATPase associated with various cellular activities, AAA_5 Pput_4620 40 COG1401 McrB, GTPase subunit of restriction endonuclease Defense mechanisms 148545569 Common - glycine betaine/L-proline ABC transporter, ATPase subunit Pput_0314 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 148546345 Common - DEAD/H associated domain protein Pput_1102 230 COG1201 Lhr, Lhr-like helicases General function prediction only 148546970 Common - bacteriophage CI repressor Pput_1732 3 None None None 148547784 Common - extracellular solute-binding protein, family 1 Pput_2567 132 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 148545770 Common - single-strand DNA-binding protein Pput_0518 211 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 148547348 Common - uncharacterised conserved protein UCP028301 Pput_2127 49 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 148549729 Common - protein of unknown function DUF156 Pput_4527 78 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 148549067 Common - transcriptional regulator, LysR family Pput_3861 185 COG0583 LysR, Transcriptional regulator Transcription 148545864 Common - peptidase A24A, prepilin type IV Pput_0614 3 COG4960 CpaA, Flp pilus assembly protein, protease CpaA Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 148546065 Common - hypothetical protein Pput_0820 20 None None None 148549047 Common - Glutathione peroxidase Pput_3841 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 148546176 Common - protein of unknown function DUF1486 Pput_0933 17 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 148546008 Common - modification methylase, HemK family Pput_0762 214 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 148548808 Common - hypothetical protein Pput_3602 3 None None None 148549121 Common - sulfatase Pput_3915 32 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 148546070 Common - hypothetical protein Pput_0825 6 None None None 148548933 Common - protein of unknown function DUF1315 Pput_3727 26 COG3139 COG3139, Uncharacterized protein conserved in bacteria Function unknown 148549610 Common - Cytochrome b/b6, N-terminal domain Pput_4406 149 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 148549623 Common - bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein Pput_4421 249 COG2895 CysN, GTPases - Sulfate adenylate transferase subunit 1 Inorganic ion transport and metabolism 148549720 Common - protocatechuate 3,4-dioxygenase, beta subunit Pput_4518 52 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 148550157 Common - Fimbrial assembly family protein Pput_4955 27 COG3166 PilN, Tfp pilus assembly protein PilN Cell motility and secretion / Intracellular trafficking and secretion 148547948 Common - protein of unknown function DUF6, transmembrane Pput_2732 52 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 148546884 Common - hypothetical protein Pput_1646 1 None None None 148546466 Common - GCN5-related N-acetyltransferase Pput_1223 52 COG0456 RimI, Acetyltransferases General function prediction only 148545869 Common - MaoC domain protein dehydratase Pput_0619 33 COG2030 MaoC, Acyl dehydratase Lipid metabolism 148550293 Common - acetylornithine deacetylase Pput_5093 197 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 148545469 Common - Disulphide bond formation protein DsbB Pput_0212 14 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 148547750 Common - electron transport protein SCO1/SenC Pput_2533 65 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 148549427 Common - hypothetical protein Pput_4221 2 None None None 148548675 Common - ATP-dependent protease La Pput_3467 212 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 148547288 Common - diguanylate cyclase Pput_2066 177 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 148550320 Common - ChaC family protein Pput_5120 44 COG3703 ChaC, Uncharacterized protein involved in cation transport Inorganic ion transport and metabolism 148547878 Common - methylated-DNA--protein-cysteine methyltransferase Pput_2662 191 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 148550364 Common - hypothetical protein Pput_5164 8 COG3224 COG3224, Uncharacterized protein conserved in bacteria Function unknown 148547592 Common - Rhs element Vgr protein Pput_2371 53 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 148549897 Common - putative TIM-barrel protein, nifR3 family Pput_4695 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 148550426 Common ubiA 4-hydroxybenzoate octaprenyltransferase Pput_5226 183 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 148545616 Common - methionine sulfoxide reductase A Pput_0361 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 148546980 Common - NADH dehydrogenase I subunit F Pput_1742 170 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 148545874 Common - putative transcriptional regulator, MerR family Pput_0624 143 COG0789 SoxR, Predicted transcriptional regulators Transcription 148547739 Common - hypothetical protein Pput_2522 13 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 148549712 Common - rRNA (guanine-N(2)-)-methyltransferase Pput_4510 75 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 148547960 Common - Cytochrome-c peroxidase Pput_2744 93 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 148550069 Common - glutathione synthetase Pput_4867 119 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 148549441 Common - protein of unknown function DUF533 Pput_4235 37 COG2979 COG2979, Uncharacterized protein conserved in bacteria Function unknown 148550413 Common - hypothetical protein Pput_5213 1 None None None 148547258 Common - amino acid permease-associated region Pput_2036 174 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 148547270 Common - Ethanolamine utilisation protein, EutH Pput_2048 18 COG3192 EutH, Ethanolamine utilization protein Amino acid transport and metabolism 148548946 Common - helix-turn-helix- domain containing protein, AraC type Pput_3740 122 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148546468 Nonpathogen - hypothetical protein Pput_1225 12 None None None 148548198 Common - Long-chain acyl-CoA synthetase (AMP-forming)-like protein Pput_2988 43 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 148549420 Common - hypothetical protein Pput_4214 1 None None None 148545424 Common - hypothetical protein Pput_0167 11 None None None 148548236 Common - protein of unknown function DUF1543 Pput_3026 13 None None None 148546992 Common - hypothetical protein Pput_1754 1 None None None 148548428 Common pheT phenylalanyl-tRNA synthetase subunit beta Pput_3220 248 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 148550243 Common - Thymidylate synthase Pput_5043 139 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 148546452 Common - ribonucleotide-diphosphate reductase subunit beta Pput_1209 154 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 148546602 Common - LmbE family protein Pput_1362 40 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 148549708 Common - DNA repair protein RadA Pput_4506 209 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 148545841 Common - Alcohol dehydrogenase, zinc-binding domain protein Pput_0591 215 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 148547551 Common - hypothetical protein Pput_2330 4 None None None 148547831 Nonpathogen - hypothetical protein Pput_2614 1 None None None 148549349 Nonpathogen - hypothetical protein Pput_4143 1 None None None 148547980 Common - UDP-glucose 6-dehydrogenase Pput_2766 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 148548862 Common - ribonuclease activity regulator protein RraA Pput_3656 89 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 148549876 Common - peptidase U61, LD-carboxypeptidase A Pput_4674 87 COG1619 LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF Defense mechanisms 148546738 Common fliG flagellar motor switch protein G Pput_1499 125 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 148545430 Common - NAD(P)(+) transhydrogenase (AB-specific) Pput_0173 123 COG1282 PntB, NAD/NADP transhydrogenase beta subunit Energy production and conversion 148549284 Common - hypothetical protein Pput_4078 26 COG3091 SprT, Uncharacterized protein conserved in bacteria Function unknown 148546163 Common - Alkaline phosphatase Pput_0920 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 148545383 Common - cytochrome oxidase assembly Pput_0126 43 COG1612 CtaA, Uncharacterized protein required for cytochrome oxidase assembly Posttranslational modification, protein turnover, chaperones 148550279 Common - Uncharacterized small protein Pput_5079 2 COG5583 COG5583, Uncharacterized small protein Function unknown 148545553 Common - polar amino acid ABC transporter, inner membrane subunit Pput_0298 172 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 148547614 Common - acetolactate synthase Pput_2393 222 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 148548487 Common - ABC transporter related Pput_3279 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 148549107 Common - transferase hexapeptide repeat containing protein Pput_3901 148 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 148547341 Common - protein of unknown function DUF876 Pput_2120 48 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 148549632 Common - ATP-dependent RNA helicase RhlB Pput_4430 233 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 148546293 Common - two component transcriptional regulator, winged helix family Pput_1050 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148548020 Common - transcriptional regulator, XRE family Pput_2806 69 COG1396 HipB, Predicted transcriptional regulators Transcription 148547036 Common - putative oxidoreductase Pput_1801 212 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 148547343 Common - putative FHA domain containing protein Pput_2122 11 COG3456 COG3456, Uncharacterized conserved protein, contains FHA domain Signal transduction mechanisms 148546215 Common gatC aspartyl/glutamyl-tRNA amidotransferase subunit C Pput_0972 149 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 148545981 Common - major facilitator superfamily MFS_1 Pput_0735 50 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148547599 Common - regulatory protein, LacI Pput_2378 126 COG1609 PurR, Transcriptional regulators Transcription 148546373 Common - hypothetical protein Pput_1130 1 None None None 148545535 Common - integral membrane sensor signal transduction histidine kinase Pput_0279 185 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 148547191 Common - ABC-3 protein Pput_1966 186 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 148546052 Common - GAD-like protein Pput_0806 10 COG5620 COG5620, Uncharacterized conserved protein Function unknown 148546518 Nonpathogen - hypothetical protein Pput_1275 1 COG5373 COG5373, Predicted membrane protein Function unknown 148550275 Common - sulfate ABC transporter, ATPase subunit Pput_5075 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 148545711 Common - hypothetical protein Pput_0459 13 None None None 148547279 Common - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Pput_2057 183 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148547632 Common - hypothetical protein Pput_2411 6 None None None 148549508 Common - outer membrane porin Pput_4302 8 None None None 148546035 Common - rRNA (guanine-N(2)-)-methyltransferase Pput_0789 111 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 148548545 Common - Spore coat U domain protein Pput_3337 8 COG5430 COG5430, Uncharacterized secreted protein Function unknown 148546812 Common - transcriptional regulator, TetR family Pput_1574 120 COG1309 AcrR, Transcriptional regulator Transcription 148546455 Common - integral membrane sensor signal transduction histidine kinase Pput_1212 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148550060 Common - adenosylmethionine--8-amino-7-oxononanoate transaminase Pput_4858 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 148547560 Common - general secretion pathway protein G Pput_2339 74 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 148546576 Common - DGPFAETKE family protein Pput_1334 46 COG3795 COG3795, Uncharacterized protein conserved in bacteria Function unknown 148549110 Common - lipopolysaccharide biosynthesis protein Pput_3904 40 COG3524 KpsE, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 148547547 Common - Integral membrane protein TerC Pput_2326 215 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 148548334 Common - regulatory protein, IclR Pput_3124 117 COG1414 IclR, Transcriptional regulator Transcription 148550185 Common - cell division ATP-binding protein FtsE Pput_4983 249 COG2884 FtsE, Predicted ATPase involved in cell division Cell division and chromosome partitioning 148546609 Common - major facilitator superfamily MFS_1 Pput_1369 152 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 148547689 Common - membrane protein-like protein Pput_2472 25 COG3174 COG3174, Predicted membrane protein Function unknown 148549701 Common - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase Pput_4499 104 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 148547142 Common - Phosphoglycerate mutase Pput_1912 26 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 148547070 Common - glutathione S-transferase-like protein Pput_1835 79 COG0435 ECM4, Predicted glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148547301 Common - GAF sensor hybrid histidine kinase Pput_2079 219 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 148545858 Common - MATE efflux family protein Pput_0608 89 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 148549146 Nonpathogen - hypothetical protein Pput_3940 1 None None None 148547854 Common - secretion protein HlyD family protein Pput_2638 129 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 148547310 Common - flavin reductase domain protein, FMN-binding Pput_2088 120 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 148550344 Common - protein of unknown function DUF526 Pput_5144 48 COG2960 COG2960, Uncharacterized protein conserved in bacteria Function unknown 148547426 Common - Pyrrolo-quinoline quinone Pput_2205 58 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 148546048 Common - Peroxiredoxin Pput_0802 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 148549835 Common - GntR domain protein Pput_4633 139 COG2186 FadR, Transcriptional regulators Transcription 148546510 Common - dihydrodipicolinate synthase Pput_1267 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 148545850 Common dipZ thiol:disulfide interchange protein precursor Pput_0600 76 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 148549212 Common - transcriptional regulator, LysR family Pput_4006 187 COG0583 LysR, Transcriptional regulator Transcription 148546001 Common - 50S ribosomal protein L25/general stress protein Ctc Pput_0755 188 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 148547639 Common - TonB-dependent siderophore receptor Pput_2419 115 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 148545414 Common - ABC-type uncharacterized transport system auxiliary component-like protein Pput_0157 28 COG3218 COG3218, ABC-type uncharacterized transport system, auxiliary component General function prediction only 148547023 Common - glycogen debranching enzyme GlgX Pput_1788 155 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 148545810 Common - TonB-dependent receptor, plug Pput_0560 127 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 148545548 Common - protein of unknown function DUF891 Pput_0292 9 COG4679 COG4679, Phage-related protein Function unknown 148545326 Common - FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pput_0069 86 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 148549837 Common - HAD-superfamily hydrolase, subfamily IA, variant 3 Pput_4635 76 COG0546 Gph, Predicted phosphatases General function prediction only 148546989 Common - peptidase S8 and S53, subtilisin, kexin, sedolisin Pput_1751 16 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 148547808 Common - transcriptional regulator, XRE family Pput_2591 130 COG1476 COG1476, Predicted transcriptional regulators Transcription 148546788 Common - hypothetical protein Pput_1549 1 None None None 148549003 Common - 4-amino-4-deoxychorismate lyase Pput_3797 168 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 148547678 Nonpathogen - hypothetical protein Pput_2461 1 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 148546937 Common - hypothetical protein Pput_1699 4 None None None 148546220 Common - ribonuclease, Rne/Rng family Pput_0977 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 148548926 Nonpathogen - hypothetical protein Pput_3720 1 None None None 148550011 Common - hypothetical protein Pput_4809 3 None None None 148546444 Common - TRAP dicarboxylate transporter, DctM subunit Pput_1201 136 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 148550280 Common - acriflavin resistance protein Pput_5080 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 148548105 Common - class II aldolase/adducin family protein Pput_2893 6 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 148548678 Common tig trigger factor Pput_3470 216 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 148550088 Common - protein of unknown function DUF1243 Pput_4886 46 COG3165 COG3165, Uncharacterized protein conserved in bacteria Function unknown 148547413 Common - protein of unknown function DUF1345 Pput_2192 38 COG4291 COG4291, Predicted membrane protein Function unknown 148550305 Common - hypothetical protein Pput_5105 18 None None None 148549760 Common - glutamyl-Q tRNA(Asp) synthetase Pput_4558 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 148548560 Common - hypothetical protein Pput_3352 14 None None None 148545595 Common - hypothetical protein Pput_0340 2 None None None 148549503 Common - protein of unknown function DUF339 Pput_4297 41 COG2938 COG2938, Uncharacterized conserved protein Function unknown 148549882 Common - lytic murein transglycosylase B Pput_4680 103 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 148546821 Common - Hydroxyisourate hydrolase Pput_1583 63 COG2351 COG2351, Transthyretin-like protein General function prediction only 148549962 Common - ribonuclease R Pput_4760 200 COG0557 VacB, Exoribonuclease R Transcription 148550270 Common - transferase hexapeptide repeat containing protein Pput_5070 218 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 148547862 Common - extracellular solute-binding protein, family 5 Pput_2646 117 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 148549465 Common rpsP 30S ribosomal protein S16 Pput_4259 209 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 148546158 Common - transcriptional regulator, LysR family Pput_0915 160 COG0583 LysR, Transcriptional regulator Transcription 148547228 Common - response regulator receiver protein Pput_2006 182 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148547722 Common - glycosyl transferase, family 2 Pput_2505 37 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 148547846 Common - hypothetical protein Pput_2630 44 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 148547261 Common - CoA-binding domain protein Pput_2039 140 COG1042 COG1042, Acyl-CoA synthetase (NDP forming) Energy production and conversion 148547696 Common - beta-ketoadipyl CoA thiolase Pput_2479 167 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 148548369 Common - chromate transporter, chromate ion transporter (CHR) family Pput_3159 114 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 148549267 Common mazG nucleoside triphosphate pyrophosphohydrolase Pput_4061 156 COG3956 COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain General function prediction only 148548040 Common - protein of unknown function DUF1294 Pput_2826 52 COG3326 COG3326, Predicted membrane protein Function unknown 148549995 Common - Calcineurin phosphoesterase C-terminal domain protein Pput_4793 83 COG1409 Icc, Predicted phosphohydrolases General function prediction only 148546502 Common - protein of unknown function DUF945 Pput_1259 17 COG5339 COG5339, Uncharacterized protein conserved in bacteria Function unknown 148548312 Common - GntR domain protein Pput_3102 145 COG2186 FadR, Transcriptional regulators Transcription 148546126 Common - helix-turn-helix domain protein Pput_0882 61 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 148548480 Common - Aspartyl/Asparaginyl beta-hydroxylase Pput_3272 36 COG3555 COG3555, Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases Posttranslational modification, protein turnover, chaperones 148545393 Common - putative ferric uptake regulator, Fur family Pput_0136 105 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 148548507 Common - hypothetical protein Pput_3299 3 None None None 148546091 Common - hypothetical protein Pput_0847 1 None None None 148548525 Common - HesB/YadR/YfhF-family protein Pput_3317 50 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 148546078 Common - disulfide bond formation protein B Pput_0833 26 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 148547077 Common - protein of unknown function UPF0005 Pput_1842 128 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 148547634 Common - hypothetical protein Pput_2413 1 None None None 148545495 Common - Acyl-CoA dehydrogenase, type 2, C-terminal domain Pput_0239 64 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148548295 Common - beta-lactamase domain protein Pput_3085 62 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 148549634 Common - molybdopterin converting factor, subunit 1 Pput_4432 63 COG1977 MoaD, Molybdopterin converting factor, small subunit Coenzyme metabolism 148548208 Common - Acyl-CoA dehydrogenase, type 2, C-terminal domain Pput_2998 129 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148546271 Common - hypothetical protein Pput_1028 28 None None None 148546326 Common - General secretion pathway protein K Pput_1083 6 COG3156 PulK, Type II secretory pathway, component PulK Intracellular trafficking and secretion 148547084 Common - Phosphopyruvate hydratase Pput_1850 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 148549869 Common - protein of unknown function DUF218 Pput_4667 66 COG1434 COG1434, Uncharacterized conserved protein Function unknown 148548243 Nonpathogen - hypothetical protein Pput_3033 1 None None None 148549026 Common - ABC transporter related Pput_3820 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 148548361 Common - Pirin domain protein Pput_3151 146 COG1741 COG1741, Pirin-related protein General function prediction only 148548448 Common - formate/nitrite transporter Pput_3240 97 COG2116 FocA, Formate/nitrite family of transporters Inorganic ion transport and metabolism 148549955 Common - ABC transporter related Pput_4753 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 148546412 Common - FAD dependent oxidoreductase Pput_1169 83 COG2509 COG2509, Uncharacterized FAD-dependent dehydrogenases General function prediction only 148548625 Nonpathogen - hypothetical protein Pput_3417 1 None None None 148546914 Common - amino acid adenylation domain Pput_1676 221 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 148548262 Common - Redoxin domain protein Pput_3052 81 COG0678 AHP1, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 148546493 Common - Tol-Pal system, TolA Pput_1250 10 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 148547129 Nonpathogen - hypothetical protein Pput_1899 1 None None None 148547836 Common - hypothetical protein Pput_2620 1 None None None 148550415 Common - TonB-system energizer ExbB type-1 Pput_5215 126 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 148546612 Common - hypothetical protein Pput_1372 1 None None None 148546037 Common - acyl-CoA synthetase Pput_0791 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148548135 Common - hypothetical protein Pput_2925 21 None None None 148548756 Common - tRNA--hydroxylase Pput_3549 40 COG4445 MiaE, Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 148546446 Common - TRAP dicarboxylate transporter, DctP subunit Pput_1203 110 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 148549040 Common - YD repeat protein Pput_3834 45 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 148548657 Common - ErfK/YbiS/YcfS/YnhG family protein Pput_3449 94 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 148549588 Common - cell division protein FtsA Pput_4383 192 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 148547880 Common - acyl-CoA synthetase Pput_2664 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 148548399 Common - O-acetylhomoserine aminocarboxypropyltransferase Pput_3191 206 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 148547005 Common - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Pput_1767 200 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 148548792 Common - lipoprotein releasing system, transmembrane protein, LolC/E family Pput_3586 164 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 148547900 Common - hypothetical protein Pput_2684 4 None None None 148549350 Nonpathogen - hypothetical protein Pput_4144 1 None None None 148545592 Common - Oxidoreductase FAD-binding domain protein Pput_0337 159 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 148547135 Nonpathogen - hypothetical protein Pput_1905 1 None None None 148549945 Common - inner-membrane translocator Pput_4743 156 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 148545867 Common - Methyltransferase type 11 Pput_0617 78 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 148548878 Common - Cupin 2, conserved barrel domain protein Pput_3672 38 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 148548626 Common - hypothetical protein Pput_3418 4 None None None 148547003 Common - two component transcriptional regulator, LuxR family Pput_1765 209 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148547890 Common - major facilitator superfamily MFS_1 Pput_2674 205 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148545534 Common - two component, sigma54 specific, transcriptional regulator, Fis family Pput_0278 220 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148546420 Common - 3-hydroxyisobutyrate dehydrogenase Pput_1177 167 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 148548750 Common - transcriptional regulator, LysR family Pput_3543 95 COG0583 LysR, Transcriptional regulator Transcription 148545462 Common - Glutathione S-transferase, N-terminal domain Pput_0205 53 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 148549017 Common - protein tyrosine phosphatase Pput_3811 141 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 148549583 Common argJ bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein Pput_4378 167 COG1364 ArgJ, N-acetylglutamate synthase (N-acetylornithine aminotransferase) Amino acid transport and metabolism 148549986 Common psd phosphatidylserine decarboxylase Pput_4784 98 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 148545472 Common - hypothetical protein Pput_0215 1 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 148545735 Common - 30S ribosomal protein S7 Pput_0483 249 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 148548611 Nonpathogen - hypothetical protein Pput_3403 1 None None None 148549683 Common - homogentisate 1,2-dioxygenase Pput_4481 45 COG3508 HmgA, Homogentisate 1,2-dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 148545639 Common - RarD protein, DMT superfamily transporter Pput_0384 95 COG2962 RarD, Predicted permeases General function prediction only 148549129 Common - dTDP-4-dehydrorhamnose 3,5-epimerase Pput_3923 166 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 148545806 Common - hypothetical protein Pput_0556 7 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 148547268 Common - hypothetical protein Pput_2046 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 148548913 Common - benzoate transporter Pput_3707 59 COG3135 BenE, Uncharacterized protein involved in benzoate metabolism Secondary metabolites biosynthesis, transport, and catabolism 148546927 Common - heat shock protein 90 Pput_1689 150 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 148548494 Common - efflux transporter, RND family, MFP subunit Pput_3286 159 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148547934 Common - Antibiotic biosynthesis monooxygenase Pput_2718 26 COG1359 COG1359, Uncharacterized conserved protein Function unknown 148547625 Common - acyl-CoA dehydrogenase domain protein Pput_2404 145 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 148547790 Common - glycosyl transferase, WecB/TagA/CpsF family Pput_2573 110 COG1922 WecG, Teichoic acid biosynthesis proteins Cell envelope biogenesis, outer membrane 148548373 Common - Aromatic-L-amino-acid decarboxylase Pput_3163 94 COG0076 GadB, Glutamate decarboxylase and related PLP-dependent proteins Amino acid transport and metabolism 148545564 Common hisB imidazoleglycerol-phosphate dehydratase Pput_0309 213 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 148548966 Common - O-succinylhomoserine sulfhydrylase Pput_3760 209 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 148548871 Common - anti-FecI sigma factor, FecR Pput_3665 43 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 148545407 Common - two component, sigma54 specific, transcriptional regulator, Fis family Pput_0150 220 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148549976 Common - protein of unknown function UPF0079 Pput_4774 205 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 148549211 Common - peptidylprolyl isomerase, FKBP-type Pput_4005 136 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 148549065 Common - transcriptional regulator, LysR family Pput_3859 171 COG0583 LysR, Transcriptional regulator Transcription 148550506 Common - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Pput_5306 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 148548397 Common - 5'-nucleotidase Pput_3189 31 None None None 148549242 Common - transcriptional regulator, MarR family Pput_4036 40 COG1846 MarR, Transcriptional regulators Transcription 148548183 Common - aminotransferase class-III Pput_2973 235 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 148546103 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Pput_0859 13 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 148547264 Common - aminotransferase, class I and II Pput_2042 238 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 148547331 Common - Gluconate 2-dehydrogenase (acceptor) Pput_2110 71 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 148548079 Common - regulatory protein, IclR Pput_2866 100 COG1414 IclR, Transcriptional regulator Transcription 148549315 Common - phage protein, HK97 gp10 family Pput_4109 5 None None None 148545298 Common - hypothetical protein Pput_0041 22 None None None 148547378 Common - iron-containing alcohol dehydrogenase Pput_2157 166 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 148545768 Common uvrA excinuclease ABC subunit A Pput_0516 244 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 148546994 Common - aminotransferase class-III Pput_1756 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 148545319 Common - hypothetical protein Pput_0062 2 None None None 148545345 Common - Alcohol dehydrogenase, zinc-binding domain protein Pput_0088 185 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 148545458 Common - hypothetical protein Pput_0201 14 None None None 148548225 Common - protein of unknown function DUF1486 Pput_3015 27 None None None 148545528 Common - formate dehydrogenase family accessory protein FdhD Pput_0272 132 COG1526 FdhD, Uncharacterized protein required for formate dehydrogenase activity Energy production and conversion 148546427 Common - Fusaric acid resistance protein conserved region Pput_1184 47 COG1289 COG1289, Predicted membrane protein Function unknown 148550307 Common - peptidase M24 Pput_5107 237 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 148545898 Common - hypothetical protein Pput_0648 2 COG4970 FimT, Tfp pilus assembly protein FimT Cell motility and secretion / Intracellular trafficking and secretion 148550121 Common - thiamine biosynthesis protein ThiI Pput_4919 94 COG0301 ThiI, Thiamine biosynthesis ATP pyrophosphatase Coenzyme metabolism 148546778 Common - hypothetical protein Pput_1539 12 None None None 148546987 Common - NolW domain protein Pput_1749 11 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 148549336 Nonpathogen - phage replication protein O Pput_4130 1 None None None 148548575 Common - Prophage tail length tape measure Pput_3367 23 COG5281 COG5281, Phage-related minor tail protein Function unknown 148550165 Common - Sporulation domain protein Pput_4963 40 COG3087 FtsN, Cell division protein Cell division and chromosome partitioning 148548728 Common - Integrase, catalytic region Pput_3520 73 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 148545822 Common - hypothetical protein Pput_0572 20 None None None 148548799 Common - glyceraldehyde-3-phosphate dehydrogenase Pput_3593 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 148550028 Common - HI0933 family protein Pput_4826 142 COG2081 COG2081, Predicted flavoproteins General function prediction only 148545883 Common - protein of unknown function UPF0029 Pput_0633 130 COG1739 COG1739, Uncharacterized conserved protein Function unknown 148547665 Common - protein of unknown function DUF395, YeeE/YedE Pput_2447 66 COG2391 COG2391, Predicted transporter component General function prediction only 148545314 Common - heavy metal efflux pump, CzcA family Pput_0057 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 148549462 Common rplS 50S ribosomal protein L19 Pput_4256 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 148549474 Common - NUDIX hydrolase Pput_4268 129 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 148550390 Nonpathogen - hypothetical protein Pput_5190 1 None None None 148545321 Common - hypothetical protein Pput_0064 7 None None None 148548319 Common - TonB-dependent siderophore receptor Pput_3109 125 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 148547513 Common - hypothetical protein Pput_2292 7 None None None 148546770 Common motC flagellar motor protein Pput_1531 120 COG1291 MotA, Flagellar motor component Cell motility and secretion 148547374 Common - GCN5-related N-acetyltransferase Pput_2153 84 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 148545931 Common - hypothetical protein Pput_0684 1 None None None 148548206 Common - periplasmic binding protein/LacI transcriptional regulator Pput_2996 76 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 148546828 Common - Xanthine dehydrogenase, small subunit Pput_1590 122 COG4630 XdhA, Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A Nucleotide transport and metabolism 148548160 Common - DNA-directed DNA polymerase Pput_2950 182 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 148546098 Common - protein of unknown function UPF0187 Pput_0854 55 COG3781 COG3781, Predicted membrane protein Function unknown 148547168 Common - 2-nitropropane dioxygenase, NPD Pput_1943 89 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 148548301 Common - two component transcriptional regulator, LuxR family Pput_3091 182 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148548658 Common - hypothetical protein Pput_3450 1 None None None 148545906 Common - ABC transporter related Pput_0656 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 148547365 Common - response regulator receiver and ANTAR domain protein Pput_2144 35 COG3707 AmiR, Response regulator with putative antiterminator output domain Signal transduction mechanisms 148548167 Common - hypothetical protein Pput_2957 15 None None None 148546652 Common - PHP C-terminal domain protein Pput_1412 129 COG0613 COG0613, Predicted metal-dependent phosphoesterases (PHP family) General function prediction only 148545275 Common - hypothetical protein Pput_0016 1 None None None 148546041 Common - response regulator receiver protein Pput_0795 98 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 148546384 Common - hypothetical protein Pput_1141 1 None None None 148549022 Common - MotA/TolQ/ExbB proton channel Pput_3816 154 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 148550009 Common - lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA Pput_4807 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 148550198 Common - glucose-methanol-choline oxidoreductase Pput_4996 80 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 148545994 Common - protein of unknown function UPF0118 Pput_0748 112 COG0628 PerM, Predicted permease General function prediction only 148548489 Common - hypothetical protein Pput_3281 1 None None None 148550013 Common - hypothetical protein Pput_4811 4 None None None 148547942 Nonpathogen - globin Pput_2726 4 COG2346 COG2346, Truncated hemoglobins General function prediction only 148548214 Common - inner-membrane translocator Pput_3004 151 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 148546731 Common fliS flagellar protein FliS Pput_1492 73 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 148547466 Common - aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein Pput_2245 69 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 148549733 Common - methylmalonate-semialdehyde dehydrogenase Pput_4531 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 148546855 Common - cytochrome c oxidase, cbb3-type, subunit II Pput_1617 82 COG2993 CcoO, Cbb3-type cytochrome oxidase, cytochrome c subunit Energy production and conversion 148550002 Common - 3-deoxy-D-manno-octulosonic-acid transferase Pput_4800 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 148545788 Common - major facilitator superfamily MFS_1 Pput_0538 88 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148548801 Common - hypothetical protein Pput_3595 1 None None None 148547239 Common glcE glycolate oxidase FAD binding subunit Pput_2017 159 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 148546659 Common - FAD linked oxidase domain protein Pput_1419 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 148546868 Common - aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding Pput_1630 114 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 148548055 Common - Urease accessory protein UreF Pput_2841 56 COG0830 UreF, Urease accessory protein UreF Posttranslational modification, protein turnover, chaperones 148546279 Common - carbamate kinase Pput_1036 65 COG0549 ArcC, Carbamate kinase Amino acid transport and metabolism 148548973 Common truA tRNA pseudouridine synthase A Pput_3767 234 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 148549515 Common - Enoyl-CoA hydratase/isomerase Pput_4309 135 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 148545721 Common - tyrosyl-tRNA synthetase Pput_0469 239 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 148547459 Common - gamma-glutamyltransferase Pput_2238 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 148548094 Common - ring hydroxylating dioxygenase, alpha subunit Pput_2881 83 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 148545753 Common rpsH 30S ribosomal protein S8 Pput_0501 229 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 148550254 Common - HAD-superfamily subfamily IB hydrolase, TIGR01490 Pput_5054 86 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 148549845 Common - DNA polymerase III, epsilon subunit Pput_4643 161 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 148550422 Common - histone family protein DNA-binding protein Pput_5222 208 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 148547411 Common - diguanylate cyclase/phosphodiesterase Pput_2190 177 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148545630 Common - PepSY-associated TM helix domain protein Pput_0375 43 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 148547352 Common - ABC transporter related Pput_2131 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 148548234 Common - hypothetical protein Pput_3024 36 None None None 148549294 Common recA recombinase A Pput_4088 215 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 148547538 Common - transmembrane pair domain protein Pput_2317 41 COG4125 COG4125, Predicted membrane protein Function unknown 148549357 Common - Zeta toxin family protein Pput_4151 5 None None None 148548821 Common - two component transcriptional regulator, LuxR family Pput_3615 211 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 148547065 Common lolA outer-membrane lipoprotein carrier protein Pput_1830 83 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 148548581 Common - hypothetical protein Pput_3373 5 None None None 148547206 Common - low temperature requirement A Pput_1984 25 COG4292 COG4292, Predicted membrane protein Function unknown 148550487 Common - histidine kinase Pput_5287 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 148545263 Common gyrB DNA gyrase subunit B Pput_0004 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 148545799 Common - riboflavin biosynthesis protein RibD Pput_0549 220 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 148547299 Common - Lysine exporter protein (LYSE/YGGA) Pput_2077 21 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148548778 Common - PDZ/DHR/GLGF domain protein Pput_3571 1 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 148549652 Common - hypothetical protein Pput_4450 1 None None None 148549927 Common - hypothetical protein Pput_4725 13 None None None 148549968 Common hisZ ATP phosphoribosyltransferase regulatory subunit Pput_4766 166 COG3705 HisZ, ATP phosphoribosyltransferase involved in histidine biosynthesis Amino acid transport and metabolism 148549534 Common - hypothetical protein Pput_4329 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 148546381 Common - protein of unknown function DUF59 Pput_1138 230 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 148547359 Common - endo-1,4-D-glucanase Pput_2138 31 COG3405 CelA, Endoglucanase Y Carbohydrate transport and metabolism 148548842 Common - hypothetical protein Pput_3636 1 None None None 148545969 Common - gamma-glutamyl kinase Pput_0723 190 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 148547520 Common - Curli production assembly/transport component CsgG Pput_2299 14 COG1462 CsgG, Uncharacterized protein involved in formation of curli polymers Cell envelope biogenesis, outer membrane 148547905 Common - major facilitator superfamily MFS_1 Pput_2689 203 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148547797 Common - transferase hexapeptide repeat containing protein Pput_2580 153 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 148548667 Common - methyl-accepting chemotaxis sensory transducer Pput_3459 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 148548987 Common - hypothetical protein Pput_3781 27 COG1647 COG1647, Esterase/lipase General function prediction only 148550043 Common ligB NAD-dependent DNA ligase LigB Pput_4841 217 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 148549895 Common prmA ribosomal protein L11 methyltransferase Pput_4693 174 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 148545515 Common - thioesterase superfamily protein Pput_0259 81 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 148547742 Common - hypothetical protein Pput_2525 209 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 148545488 Common - fatty acid desaturase Pput_0232 65 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 148546599 Common - 6-phosphogluconate dehydrogenase, NAD-binding Pput_1359 53 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 148547495 Common - peptidase U32 Pput_2274 140 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 148546260 Common - DNA polymerase III subunit chi Pput_1017 62 COG2927 HolC, DNA polymerase III, chi subunit DNA replication, recombination, and repair 148548708 Nonpathogen - hypothetical protein Pput_3500 1 None None None 148547753 Common - SMP-30/Gluconolaconase/LRE domain protein Pput_2536 70 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 148547985 Common - Allophanate hydrolase subunit 1 Pput_2771 98 COG2049 DUR1, Allophanate hydrolase subunit 1 Amino acid transport and metabolism 148548410 Common - transcriptional regulator, LysR family Pput_3202 183 COG0583 LysR, Transcriptional regulator Transcription 148546724 Common - methyltransferase FkbM family Pput_1485 28 None None None 148546366 Common - bacterioferritin Pput_1123 105 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 148547221 Common - outer membrane porin Pput_1999 12 None None None 148545792 Common - ABC transporter related Pput_0542 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 148549202 Common - binding-protein-dependent transport systems inner membrane component Pput_3996 170 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 148545677 Common - hypothetical protein Pput_0425 157 COG0344 COG0344, Predicted membrane protein Function unknown 148545448 Common - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein Pput_0191 21 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 148547407 Common - efflux transporter, RND family, MFP subunit Pput_2186 162 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 148548588 Common - protein of unknown function DUF264 Pput_3380 11 None None None 148546593 Common - transcriptional regulator, LysR family Pput_1351 159 COG0583 LysR, Transcriptional regulator Transcription 148548807 Common - hypothetical protein Pput_3601 4 None None None 148549249 Common - threonine-phosphate decarboxylase Pput_4043 85 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 148545779 Common - selenocysteine synthase Pput_0527 71 COG1921 SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] Amino acid transport and metabolism 148546523 Common - regulatory protein, ArsR Pput_1280 35 COG0640 ArsR, Predicted transcriptional regulators Transcription 148549772 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Pput_4570 20 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 148545270 Common - protein of unknown function DUF411 Pput_0011 64 COG3019 COG3019, Predicted metal-binding protein General function prediction only 148548705 Common - major facilitator superfamily MFS_1 Pput_3497 187 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148545437 Common - anti-FecI sigma factor, FecR Pput_0180 43 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 148548156 Common - hypothetical protein Pput_2946 21 COG1955 FlaJ, Archaeal flagella assembly protein J Cell motility and secretion / Intracellular trafficking and secretion 148549856 Common - pseudouridine synthase Pput_4654 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 148546766 Common - response regulator receiver protein Pput_1527 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 148548635 Common - phage transcriptional regulator, AlpA Pput_3427 43 COG3311 AlpA, Predicted transcriptional regulator Transcription 148547559 Common - type II secretion system protein Pput_2338 140 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 148548726 Common - hypothetical protein Pput_3518 1 None None None 148548744 Common - DinB family protein Pput_3537 32 COG2318 DinB, Uncharacterized protein conserved in bacteria Function unknown 148550490 Common - 3-oxoacid CoA-transferase, B subunit Pput_5290 94 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 148550126 Common - hypothetical protein Pput_4924 1 None None None 148549544 Common - RND efflux system, outer membrane lipoprotein, NodT family Pput_4339 125 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 148547894 Nonpathogen - hypothetical protein Pput_2678 1 None None None 148549426 Common - OmpA/MotB domain protein Pput_4220 171 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 148548357 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Pput_3147 23 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 148549636 Common - PhoH family protein Pput_4434 199 COG1875 COG1875, Predicted ATPase related to phosphate starvation-inducible protein PhoH Signal transduction mechanisms 148546405 Common - Beta-agarase Pput_1162 11 COG1874 LacA, Beta-galactosidase Carbohydrate transport and metabolism 148546689 Common - diguanylate cyclase with PAS/PAC sensor Pput_1449 189 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 148549784 Common - phosphoglucosamine mutase Pput_4582 242 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 148550176 Common - coproporphyrinogen III oxidase Pput_4974 205 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 148548566 Nonpathogen - hypothetical protein Pput_3358 1 None None None 148547047 Common - alpha/beta hydrolase fold Pput_1812 88 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148545645 Common - Carboxylesterase Pput_0390 56 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148548432 Common infC translation initiation factor IF-3 Pput_3224 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 148549781 Common - hypothetical protein Pput_4579 178 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 148548031 Common - protein of unknown function DUF6, transmembrane Pput_2817 102 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 148548838 Common - glutaredoxin 2 Pput_3632 11 None None None 148549451 Common - YaeQ family protein Pput_4245 52 COG4681 COG4681, Uncharacterized protein conserved in bacteria Function unknown 148548810 Common - protein of unknown function DUF1653 Pput_3604 36 COG4728 COG4728, Uncharacterized protein conserved in bacteria Function unknown 148548062 Common - phage integrase family protein Pput_2848 202 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 148545389 Common katE hydroperoxidase II Pput_0132 126 COG0753 KatE, Catalase Inorganic ion transport and metabolism 148546419 Common - Uncharacterized small conserved protein Pput_1176 11 COG5626 COG5626, Uncharacterized small conserved protein Function unknown 148547111 Common - binding-protein-dependent transport systems inner membrane component Pput_1881 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 148547657 Common - Uncharacterized protein containing double-stranded beta helix domain Pput_2437 20 COG4297 COG4297, Uncharacterized protein containing double-stranded beta helix domain Function unknown 148546546 Common - tRNA/rRNA methyltransferase (SpoU) Pput_1304 23 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 148546952 Common - TonB-dependent siderophore receptor Pput_1714 87 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 148545926 Common - filamentation induced by cAMP protein Fic Pput_0676 106 COG3177 COG3177, Uncharacterized conserved protein Function unknown 148546437 Common - Asparaginase/glutaminase Pput_1194 113 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 148548260 Common - hypothetical protein Pput_3050 11 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 148549186 Common - hypothetical protein Pput_3980 1 None None None 148547641 Common - drug resistance transporter, Bcr/CflA subfamily Pput_2421 212 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 148546483 Common - hypothetical protein Pput_1240 22 COG4321 COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis General function prediction only 148545940 Common - amino acid permease-associated region Pput_0694 189 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 148548534 Common - leucine-rich repeat protein Pput_3326 8 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 148548081 Common - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family Pput_2868 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 148549401 Common - aminotransferase, class V Pput_4195 237 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 148546321 Common - phosphoribosylformylglycinamidine synthase Pput_1078 232 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 148547503 Common - 40-residue YVTN family beta-propeller repeat protein Pput_2282 67 COG3391 COG3391, Uncharacterized conserved protein Function unknown 148549408 Common - putative cold-shock DNA-binding domain protein Pput_4202 175 COG1278 CspC, Cold shock proteins Transcription 148545573 Common - transcriptional regulator, AraC family Pput_0318 146 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 148546246 Common - UDP-N-acetylglucosamine 1-carboxyvinyltransferase Pput_1003 213 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 148549754 Common - transport system permease protein Pput_4552 185 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 148549779 Common infB translation initiation factor IF-2 Pput_4577 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 148546136 Common - putative hydroxylase Pput_0892 45 COG3128 PiuC, Uncharacterized iron-regulated protein Function unknown 148549597 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase Pput_4392 213 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 148547430 Common - Lysine exporter protein (LYSE/YGGA) Pput_2209 122 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 148546161 Common - oligopeptide/dipeptide ABC transporter, ATPase subunit Pput_0918 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 148548454 Common - hypothetical protein Pput_3246 14 None None None 148547234 Common - major facilitator superfamily MFS_1 Pput_2012 49 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 148548691 Common - C4-dicarboxylate transporter DctA Pput_3483 161 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 148549686 Common - alpha/beta hydrolase fold Pput_4484 95 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148546143 Common - binding-protein-dependent transport systems inner membrane component Pput_0899 163 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 148547488 Nonpathogen - hypothetical protein Pput_2267 1 None None None 148549805 Common - D-lactate dehydrogenase (cytochrome) Pput_4603 199 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 148547240 Common - glycolate oxidase subunit GlcD Pput_2018 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 148545441 Common - diguanylate cyclase/phosphodiesterase Pput_0184 165 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 148546746 Common fliL flagellar basal body-associated protein FliL Pput_1507 21 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 148547866 Common - Citrate transporter Pput_2650 36 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 148549908 Common cobH precorrin-8X methylmutase Pput_4706 118 COG2082 CobH, Precorrin isomerase Coenzyme metabolism 148549564 Common sbcB exonuclease I Pput_4359 51 COG2925 SbcB, Exonuclease I DNA replication, recombination, and repair 148546557 Common - hypothetical protein Pput_1315 58 COG3825 COG3825, Uncharacterized protein conserved in bacteria Function unknown 148549163 Common - BolA family protein Pput_3957 98 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 148548465 Common - Integral membrane protein TerC Pput_3257 96 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 148546676 Common - Arginine N-succinyltransferase Pput_1436 37 COG3138 AstA, Arginine/ornithine N-succinyltransferase beta subunit Amino acid transport and metabolism 148545479 Common - YbaK/prolyl-tRNA synthetase associated region Pput_0222 29 COG2606 EbsC, Uncharacterized conserved protein Function unknown 148546865 Common dsbG disulfide isomerase/thiol-disulfide oxidase Pput_1627 34 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 148548350 Common - Paraquat-inducible protein A Pput_3140 54 COG2995 PqiA, Uncharacterized paraquat-inducible protein A Function unknown 148549150 Common - 3-phosphoshikimate 1-carboxyvinyltransferase Pput_3944 229 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 148546899 Common - Succinate dehydrogenase, cytochrome b556 subunit Pput_1661 85 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 148549911 Common cbiD cobalt-precorrin-6A synthase Pput_4709 83 COG1903 CbiD, Cobalamin biosynthesis protein CbiD Coenzyme metabolism 148545949 Common - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Pput_0703 195 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 148549369 Common ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Pput_4163 192 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 148550444 Common - phosphoribosylaminoimidazole carboxylase, catalytic subunit Pput_5244 232 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 148545609 Common - hypothetical protein Pput_0354 4 None None None 148548686 Common - ABC transporter related Pput_3478 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 148549520 Common - alpha/beta hydrolase fold Pput_4315 8 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 148547766 Common - catechol 1,2-dioxygenase Pput_2549 48 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 148546957 Common - extracellular solute-binding protein, family 5 Pput_1719 175 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 148549889 Common - 3-methyladenine DNA glycosylase Pput_4687 58 COG2094 Mpg, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 148547424 Common - acetylornithine deacetylase Pput_2203 208 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 148548253 Common - AMP-dependent synthetase and ligase Pput_3043 215 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 148546968 Nonpathogen - hypothetical protein Pput_1730 1 None None None 148550035 Common - fructose-1,6-bisphosphate aldolase Pput_4833 176 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 148547124 Common - alpha/beta hydrolase fold Pput_1894 14 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only