Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence NC_009040 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 126464864 Common - putative transcriptional regulator, AsnC family Rsph17029_4135 3 COG1522 Lrp, Transcriptional regulators Transcription 126464809 Common - secretion protein HlyD family protein Rsph17029_4071 28 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 126464828 Common - hypothetical protein Rsph17029_4090 18 None None None 126464910 Common - putative transcriptional regulator, AsnC family Rsph17029_4183 138 COG1522 Lrp, Transcriptional regulators Transcription 126464836 Common - ATP synthase F1, epsilon subunit Rsph17029_4098 14 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 126464874 Common - transcriptional regulator, GntR family Rsph17029_4146 133 COG1802 GntR, Transcriptional regulators Transcription 126464912 Common - Na-Ca exchanger/integrin-beta4 Rsph17029_4185 66 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism 126464887 Common flbT flagellar biosynthesis repressor FlbT Rsph17029_4160 23 COG5443 FlbT, Flagellar biosynthesis regulator FlbT Cell motility and secretion 126464891 Common - protein of unknown function DUF81 Rsph17029_4164 36 None None None 126464866 Common - putative transcriptional regulator, MerR family Rsph17029_4137 117 COG0789 SoxR, Predicted transcriptional regulators Transcription 126464843 Common - hypothetical protein Rsph17029_4108 15 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 126464827 Common - hypothetical protein Rsph17029_4089 22 COG3551 COG3551, Uncharacterized protein conserved in bacteria Function unknown 126464904 Common - Lysine exporter protein (LYSE/YGGA) Rsph17029_4177 79 COG1279 COG1279, Lysine efflux permease General function prediction only 126464816 Common - dTDP-glucose 4,6-dehydratase Rsph17029_4078 232 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 126464835 Common - F0F1 ATP synthase subunit beta Rsph17029_4097 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 126464871 Common - sulphate transporter Rsph17029_4143 160 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 126464855 Common - TonB-dependent siderophore receptor Rsph17029_4121 125 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 126464825 Common - Lipopolysaccharide biosynthesis protein-like Rsph17029_4087 41 COG3754 RgpF, Lipopolysaccharide biosynthesis protein Cell envelope biogenesis, outer membrane 126464833 Common - NAD-dependent epimerase/dehydratase Rsph17029_4095 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 126464893 Common - transcriptional regulator, ModE family Rsph17029_4166 90 COG2005 ModE, N-terminal domain of molybdenum-binding protein General function prediction only 126464902 Common - transcriptional regulator, BadM/Rrf2 family Rsph17029_4175 164 COG1959 COG1959, Predicted transcriptional regulator Transcription 126464889 Common - flagellin domain protein Rsph17029_4162 26 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 126464841 Common - ATP synthase F1, alpha subunit Rsph17029_4103 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 126464848 Common - hypothetical protein Rsph17029_4114 6 None None None 126464873 Common - nucleoside diphosphate kinase regulator Rsph17029_4145 65 COG0782 GreA, Transcription elongation factor Transcription 126464812 Nonpathogen - hypothetical protein Rsph17029_4074 8 None None None 126464878 Common - short-chain dehydrogenase/reductase SDR Rsph17029_4150 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 126464819 Common - RepA Rsph17029_4081 32 COG5534 COG5534, Plasmid replication initiator protein DNA replication, recombination, and repair 126464860 Common - protein of unknown function DUF81 Rsph17029_4130 39 COG0730 COG0730, Predicted permeases General function prediction only 126464876 Common - binding-protein-dependent transport systems inner membrane component Rsph17029_4148 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 126464822 Common - ABC transporter related Rsph17029_4084 248 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 126464909 Common - sulfate ABC transporter, ATPase subunit Rsph17029_4182 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 126464853 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Rsph17029_4119 32 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 126464900 Common - alkylhydroperoxidase like protein, AhpD family Rsph17029_4173 63 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 126464839 Common - ATP synthase F0, C subunit Rsph17029_4101 93 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 126464880 Common - Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein Rsph17029_4153 120 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 126464810 Common - Methyltransferase type 11 Rsph17029_4072 14 COG4627 COG4627, Uncharacterized protein conserved in bacteria Function unknown 126464869 Common - protein of unknown function DUF606 Rsph17029_4141 59 COG3238 COG3238, Uncharacterized protein conserved in bacteria Function unknown 126464817 Common - dTDP-4-dehydrorhamnose 3,5-epimerase Rsph17029_4079 165 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 126464897 Common modB molybdate ABC transporter permease protein Rsph17029_4170 218 COG4149 ModC, ABC-type molybdate transport system, permease component Inorganic ion transport and metabolism 126464895 Common - TOBE domain protein Rsph17029_4168 70 COG3585 MopI, Molybdopterin-binding protein Coenzyme metabolism 126464875 Common - extracellular solute-binding protein, family 5 Rsph17029_4147 178 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 126464858 Common - ABC transporter related Rsph17029_4124 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 126464851 Common - putative transcriptional regulator, MerR family Rsph17029_4117 127 COG0789 SoxR, Predicted transcriptional regulators Transcription 126464807 Common - Tetratricopeptide TPR_2 repeat protein Rsph17029_4069 49 COG3914 Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family Posttranslational modification, protein turnover, chaperones 126464862 Common - Lysine exporter protein (LYSE/YGGA) Rsph17029_4133 106 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 126464846 Common - YD repeat protein Rsph17029_4111 74 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 126464814 Common - glucose-1-phosphate thymidylyltransferase Rsph17029_4076 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 126464884 Common - oligopeptide/dipeptide ABC transporter, ATPase subunit Rsph17029_4157 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 126464882 Common - MlrC domain protein Rsph17029_4155 32 COG5476 COG5476, Uncharacterized conserved protein Function unknown 126464820 Common - Cobyrinic acid a,c-diamide synthase Rsph17029_4082 201 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 126464907 Common - sulfate ABC transporter, inner membrane subunit CysT Rsph17029_4180 235 COG0555 CysU, ABC-type sulfate transport system, permease component Posttranslational modification, protein turnover, chaperones 126464830 Nonpathogen - hypothetical protein Rsph17029_4092 1 None None None 126464837 Common - ATP synthase gene 1, putative Rsph17029_4099 4 COG5178 PRP8, U5 snRNP spliceosome subunit RNA processing and modification 126464899 Common - Exopolysaccharide synthesis, ExoD Rsph17029_4172 35 COG3932 COG3932, Uncharacterized ABC-type transport system, permease components General function prediction only 126464890 Nonpathogen - hypothetical protein Rsph17029_4163 1 COG2273 SKN1, Beta-glucanase/Beta-glucan synthetase Carbohydrate transport and metabolism 126464844 Common - ISSpo9, transposase Rsph17029_4109 15 None None None 126464886 Common - protein of unknown function DUF1217 Rsph17029_4159 19 None None None 126464865 Common - alpha/beta hydrolase fold Rsph17029_4136 118 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 126464856 Common - periplasmic binding protein Rsph17029_4122 36 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 126464829 Common - Hemolysin-type calcium-binding region Rsph17029_4091 67 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism 126464849 Nonpathogen - hypothetical protein Rsph17029_4115 3 None None None 126464892 Nonpathogen - GntR domain protein Rsph17029_4165 6 COG2186 FadR, Transcriptional regulators Transcription 126464834 Nonpathogen - hypothetical protein Rsph17029_4096 1 None None None 126464881 Common - Succinylglutamate desuccinylase/aspartoacylase Rsph17029_4154 54 COG3608 COG3608, Predicted deacylase General function prediction only 126464877 Common - binding-protein-dependent transport systems inner membrane component Rsph17029_4149 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 126464888 Nonpathogen flaF flagellar biosynthesis regulatory protein FlaF Rsph17029_4161 10 COG5442 FlaF, Flagellar biosynthesis regulator FlaF Cell motility and secretion 126464905 Common - chromosome replication initiation inhibitor protein Rsph17029_4178 114 COG0583 LysR, Transcriptional regulator Transcription 126464842 Common - H+-transporting two-sector ATPase, gamma subunit Rsph17029_4104 4 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 126464826 Nonpathogen - hypothetical protein Rsph17029_4088 4 None None None 126464867 Nonpathogen - hypothetical protein Rsph17029_4138 1 None None None 126464815 Common - dTDP-4-dehydrorhamnose reductase Rsph17029_4077 163 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 126464854 Common - putative FecR Rsph17029_4120 44 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 126464823 Common - capsule polysaccharide export protein-like Rsph17029_4085 37 COG3524 KpsE, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 126464908 Common - sulfate ABC transporter, inner membrane subunit CysW Rsph17029_4181 194 COG4208 CysW, ABC-type sulfate transport system, permease component Inorganic ion transport and metabolism 126464832 Common - hypothetical protein Rsph17029_4094 13 None None None 126464818 Common - glycosyl transferase, family 2 Rsph17029_4080 38 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 126464824 Common - ABC-2 type transporter Rsph17029_4086 48 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 126464896 Common - molybdenum ABC transporter, periplasmic molybdate-binding protein Rsph17029_4169 151 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 126464894 Common - modD protein Rsph17029_4167 179 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 126464903 Common - FMN-binding negative transcriptional regulator Rsph17029_4176 60 COG2808 PaiB, Transcriptional regulator Transcription 126464840 Nonpathogen - H+-transporting two-sector ATPase, B/B' subunit Rsph17029_4102 1 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 126464859 Common - uncharacterized domain 1 Rsph17029_4126 52 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 126464868 Common - transcriptional regulator, LysR family Rsph17029_4140 102 COG0583 LysR, Transcriptional regulator Transcription 126464811 Common - 2-dehydro-3-deoxyphosphooctonate aldolase Rsph17029_4073 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 126464847 Nonpathogen - hypothetical protein Rsph17029_4113 1 None None None 126464861 Nonpathogen - hypothetical protein Rsph17029_4132 1 None None None 126464883 Common - Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein Rsph17029_4156 69 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 126464879 Common - short-chain dehydrogenase/reductase SDR Rsph17029_4152 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 126464870 Common - UspA domain protein Rsph17029_4142 38 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 126464806 Common - large exoprotein involved in heme utilization or adhesion Rsph17029_4068 9 None None None 126464911 Common - protein of unknown function UPF0126 Rsph17029_4184 129 COG2860 COG2860, Predicted membrane protein Function unknown 126464821 Common - ParB domain protein nuclease Rsph17029_4083 11 COG1475 Spo0J, Predicted transcriptional regulators Transcription 126464852 Common - cation diffusion facilitator family transporter Rsph17029_4118 173 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 126464901 Nonpathogen - hypothetical protein Rsph17029_4174 1 None None None 126464831 Nonpathogen - hypothetical protein Rsph17029_4093 2 None None None 126464898 Common - molybdate ABC transporter, ATPase subunit Rsph17029_4171 249 COG4148 ModC, ABC-type molybdate transport system, ATPase component Inorganic ion transport and metabolism 126464838 Common - ATP synthase F0, A subunit Rsph17029_4100 202 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 126464850 Common - transcriptional regulator, AraC family Rsph17029_4116 67 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 126464845 Nonpathogen - hypothetical protein Rsph17029_4110 1 None None None 126464906 Common - sulfate ABC transporter, periplasmic sulfate-binding protein Rsph17029_4179 88 COG1613 Sbp, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 126464872 Common - MscS Mechanosensitive ion channel Rsph17029_4144 172 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 126464863 Common - protein of unknown function DUF1234 Rsph17029_4134 51 COG3545 COG3545, Predicted esterase of the alpha/beta hydrolase fold General function prediction only 126464857 Common - iron-hydroxamate transporter permease subunit Rsph17029_4123 108 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 126464885 Common - oligopeptide/dipeptide ABC transporter, ATPase subunit Rsph17029_4158 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 126464808 Common - ABC transporter related Rsph17029_4070 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 126464813 Common - sulfotransferase Rsph17029_4075 29 None None None