Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence NC_009007 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 125654684 Nonpathogen - hypothetical protein RSP_3925 6 None None None 125654647 Common flgF possible flagellar basal-body ROD protein FLGF RSP_3881 19 None None None 125654655 Common - Short-chain dehydrogenase/reductase RSP_3889 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 125654612 Common rfbC dTDP-4-dehydrorhamnose 3,5-epimerase related protein RSP_3843 165 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 125654662 Common - putative Mrr restriction system protein RSP_7364 20 COG1715 Mrr, Restriction endonuclease Defense mechanisms 125654672 Common virC1 possible virC1 gene, ATPase RSP_3901 39 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 125654619 Common - Generic methyltransferase RSP_3850 14 COG4627 COG4627, Uncharacterized protein conserved in bacteria Function unknown 125654632 Common - Negative transcriptional regulator RSP_3864 60 COG2808 PaiB, Transcriptional regulator Transcription 125654691 Common - hypothetical protein RSP_3918 41 COG3754 RgpF, Lipopolysaccharide biosynthesis protein Cell envelope biogenesis, outer membrane 125654649 Common - ABC di/oligopeptide transporter, ATPase subunit RSP_3883 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 125654608 Common - ParB-like nuclease RSP_7084 11 None None None 125654645 Nonpathogen flaF flagellar biosynthesis regulatory protein FlaF RSP_3879 9 COG5442 FlaF, Flagellar biosynthesis regulator FlaF Cell motility and secretion 125654674 Common repC possible replication protein C RSP_3896 17 None None None 125654676 Common atpA H+-transporting two-sector ATPase, alpha/beta subunit RSP_3935 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 125654660 Common - probable ring hydroxylating dioxygenase, alpha- subunit RSP_3894 36 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 125654614 Common rmlD/rfbD dTDP-4-dehydrorhamnose reductase RSP_3845 163 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 125654669 Common traI TraI RSP_3904 64 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 125654634 Nonpathogen - hypothetical protein RSP_3866 1 None None None 125654667 Common - DSBA oxidoreductase RSP_3906 63 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 125654622 Common - predicted O-linked acetylglucosamine transferase RSP_3853 49 COG3914 Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family Posttranslational modification, protein turnover, chaperones 125654624 Common - Hemolysin-type calcium-binding protein RSP_3855 66 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism 125654615 Common rmlA/rfbA Glucose-1-phosphatethymidylyl transferase, long form RSP_3848 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 125654658 Common - ABC di/oligopeptide transporter, periplasmic ligand binding protein RSP_3892 178 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 125654637 Common modC ABC molybdate transporter, ATPase subunit ModC RSP_3869 249 COG4148 ModC, ABC-type molybdate transport system, ATPase component Inorganic ion transport and metabolism 125654643 Nonpathogen - Glycoside hydrolase, family 16 RSP_3877 1 COG2273 SKN1, Beta-glucanase/Beta-glucan synthetase Carbohydrate transport and metabolism 125654607 Common rkpS ABC polysaccharide export transporter, ATPase subunit RSP_3839 248 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 125654626 Common - Transcriptional regulator, AsnC family RSP_7362 138 COG1522 Lrp, Transcriptional regulators Transcription 125654681 Common atpD F0F1 ATP synthase subunit beta RSP_3929 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 125654635 Common - Carboxymuconolactonedecarboxylase/Alkylhydroperoxidase RSP_3867 63 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 125654639 Common - Molybdenum-pterin binding protein RSP_3872 70 COG3585 MopI, Molybdopterin-binding protein Coenzyme metabolism 125654679 Common - hypothetical protein RSP_3931 4 None None None 125654670 Nonpathogen - hypothetical protein RSP_3903 1 None None None 125654665 Common - hypothetical protein RSP_3908 4 None None None 125654688 Common - hypothetical protein RSP_3921 18 None None None 125654617 Nonpathogen - hypothetical protein RSP_6258 8 None None None 125654610 Common - Plasmid replication initiator protein RepA RSP_6257 32 COG5534 COG5534, Plasmid replication initiator protein DNA replication, recombination, and repair 125654653 Common - Mandelate racemase/muconate lactonizing enzyme RSP_3887 119 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 125654686 Nonpathogen - hypothetical protein RSP_3923 1 None None None 125654630 Common - ABC Sulfate/Molybdate transporter, periplasmic ligand binding protein RSP_3861 88 COG1613 Sbp, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 125654628 Common - ABC Sulfate/Molybdate transporter, inner membrane subunit RSP_3859 194 COG4208 CysW, ABC-type sulfate transport system, permease component Inorganic ion transport and metabolism 125654641 Common mopB transcriptional repressor, ModE RSP_3874 91 COG2005 ModE, N-terminal domain of molybdenum-binding protein General function prediction only 125654648 Common - ABC di/oligopeptide transporter, ATPase subunit RSP_3882 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 125654663 Nonpathogen - hypothetical protein RSP_3910 1 None None None 125654651 Common - hypothetical protein RSP_3885 32 COG5476 COG5476, Uncharacterized conserved protein Function unknown 125654621 Common - ABC export transporter, fused inner membrane and ATPase subunits RSP_3852 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 125654646 Common flbT flagellar biosynthesis repressor FlbT RSP_3880 23 COG5443 FlbT, Flagellar biosynthesis regulator FlbT Cell motility and secretion 125654685 Nonpathogen - hypothetical protein RSP_3924 2 None None None 125654673 Common - hypothetical protein RSP_3899 23 None None None 125654654 Common fabG Short-chain dehydrogenase/reductase SDR RSP_3888 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 125654631 Common - chromosome replication initiation inhibitor protein RSP_3862 121 COG0583 LysR, Transcriptional regulator Transcription 125654611 Common rfbG Glycosyl transferase, family 2 RSP_3842 38 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 125654613 Common rffG/rfbB dTDP-glucose 4,6-dehydratase RSP_3844 232 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 125654661 Common - hypothetical protein RSP_7363 22 COG2929 COG2929, Uncharacterized protein conserved in bacteria Function unknown 125654692 Common rkpT1 ABC polysaccharide export transporter, inner membrane subunit RSP_3917 48 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 125654633 Common - predicted transcriptional regulator RSP_3865 164 COG1959 COG1959, Predicted transcriptional regulator Transcription 125654683 Common - NAD-dependent epimerase/dehydratase RSP_3926 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 125654656 Common - ABC di/oligopeptide transporter, inner membrane subunit RSP_3890 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 125654609 Common repA ATPase, ParA type RSP_3840 201 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 125654623 Common - Ice nucleation protein RSP_3854 9 None None None 125654625 Common - Protein of unknown function UPF0126 RSP_3856 129 COG2860 COG2860, Predicted membrane protein Function unknown 125654644 Common flaA Flagellin RSP_3878 26 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 125654675 Common - possible H(+)-transporting ATP synthase, subunit gamma RSP_3936 4 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 125654606 Common - capsule polysaccharide export protein RSP_3838 37 COG3524 KpsE, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 125654668 Common traD TraG RSP_3905 69 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 125654677 Nonpathogen - H+-transporting two-sector ATPase, B/B' subunit RSP_7012 1 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 125654627 Common cysA ABC Sulfate/Molybdate transporter, ATPase subunit RSP_3858 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 125654642 Common - hypothetical protein RSP_3876 36 None None None 125654690 Nonpathogen - hypothetical protein RSP_3919 4 None None None 125654689 Common - hypothetical protein RSP_3920 22 COG3551 COG3551, Uncharacterized protein conserved in bacteria Function unknown 125654659 Common pdhR transcriptional regulator, GntR family RSP_3893 133 COG1802 GntR, Transcriptional regulators Transcription 125654657 Common - ABC di/oligopeptide transporter, inner membrane subunit RSP_3891 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 125654616 Common - putative deacetylase sulfotransferase RSP_3846 29 None None None 125654666 Nonpathogen - hypothetical protein RSP_3907 1 None None None 125654682 Nonpathogen - hypothetical protein RSP_3927 1 None None None 125654636 Common - possible ABC molybdate transporter, inner membrane subunit RSP_3868 35 COG3932 COG3932, Uncharacterized ABC-type transport system, permease components General function prediction only 125654678 Common - H+-transporting two-sector ATPase, A subunit RSP_3933 202 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 125654620 Common - Membrane-fusion protein RSP_7361 28 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 125654629 Common - ABC Sulfate/Molybdate transporter, inner membrane subunit RSP_3860 235 COG0555 CysU, ABC-type sulfate transport system, permease component Posttranslational modification, protein turnover, chaperones 125654671 Nonpathogen - hypothetical protein RSP_3902 4 None None None 125654638 Common modA ABC molybdate transporter, periplasmic binding protein ModA RSP_3871 150 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 125654664 Nonpathogen - hypothetical protein RSP_3909 1 None None None 125654650 Common - Mandelate racemase/muconate lactonizing enzyme/Enolase superfamily RSP_3884 70 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 125654618 Common - 2-dehydro-3-deoxyphosphooctonate aldolase RSP_3849 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 125654680 Common atpC-1 H+-transporting two-sector ATPase, delta/epsilon subunit RSP_3930 14 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 125654652 Common - Succinylglutamatedesuccinylase/aspartoacylase RSP_3886 54 COG3608 COG3608, Predicted deacylase General function prediction only 125654640 Common modD Quinolinate phosphoribosyl transferase/Putativemolybdenum utilization protein ModD RSP_3873 159 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 125654687 Common - Hemolysin-type calcium-binding protein RSP_3922 56 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism