Campylobacter jejuni subsp. jejuni 81-176, complete genome NC_008787 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 121613340 Pathogen - hypothetical protein CJJ81176_0968 1 None None None 121613607 Pathogen - hypothetical protein CJJ81176_0069 2 None None None 121613645 Common - 2-oxoglutarate/malate translocator CJJ81176_0089 41 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 121612654 Common - lipoprotein, putative CJJ81176_1108 7 None None None 121613374 Common speA arginine decarboxylase CJJ81176_0785 161 COG1166 SpeA, Arginine decarboxylase (spermidine biosynthesis) Amino acid transport and metabolism 121613541 Common - hypothetical protein CJJ81176_1246 2 None None None 121613338 Common acs acetyl-CoA synthetase CJJ81176_1522 215 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 121612605 Pathogen - hypothetical protein CJJ81176_0445 1 None None None 121612491 Common - major facilitator superfamily protein CJJ81176_1679 72 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 121612854 Common - soluble lytic murein transglycosylase, putative CJJ81176_0859 113 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 121613130 Common nuoJ NADH dehydrogenase subunit J CJJ81176_1555 40 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 121613137 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase CJJ81176_1672 148 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 121612927 Common - sulfatase, putative CJJ81176_0283 59 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 121613167 Common - capsular biosynthesis sugar kinase, putative CJJ81176_1424 34 COG2605 COG2605, Predicted kinase related to galactokinase and mevalonate kinase General function prediction only 121613145 Common - hemin ABC transporter, ATP-binding protein, putative CJJ81176_1603 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 121612142 Common - hypothetical protein CJJ81176_0261 139 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 121612213 Common nuoI NADH dehydrogenase subunit I CJJ81176_1556 188 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 121612130 Pathogen - hypothetical protein CJJ81176_0400 1 None None None 121612373 Common - flagellar assembly protein FliW CJJ81176_1093 26 COG1699 COG1699, Uncharacterized protein conserved in bacteria Function unknown 121612598 Common - sodium-dependent transporter, putative CJJ81176_0629 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 121612289 Common map methionine aminopeptidase CJJ81176_1642 249 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 121612325 Common - high affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein CJJ81176_1037 134 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 121612891 Common waaF ADP-heptose--LPS heptosyltransferase II CJJ81176_1164 88 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 121612806 Common - inner membrane protein YagU CJJ81176_0040 11 COG3477 COG3477, Predicted periplasmic/secreted protein Function unknown 121612145 Common - hypothetical protein CJJ81176_1411 14 None None None 121612965 Common - beta-1,3-galactosyltransferase CJJ81176_1156 205 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 121612941 Common - integral membrane protein CJJ81176_0876 44 None None None 121612569 Common - putative periplasmic protein CJJ81176_1743 24 None None None 121612384 Common def peptide deformylase CJJ81176_0222 212 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 121612635 Common - thiF family protein CJJ81176_0318 72 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 121612947 Common rpoD RNA polymerase sigma factor RpoD CJJ81176_1019 217 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 121612573 Common dnaJ-1 co-chaperone protein DnaJ CJJ81176_1243 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 121612689 Common nspC carboxynorspermidine decarboxylase CJJ81176_1507 54 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 121612628 Pathogen - hypothetical protein CJJ81176_0287 1 None None None 121612107 Common - hypothetical protein CJJ81176_1497 25 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 121612957 Common - site-specific recombinase, phage integrase family CJJ81176_0879 215 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 121613313 Common - hypothetical protein CJJ81176_0752 19 COG1524 COG1524, Uncharacterized proteins of the AP superfamily General function prediction only 121612254 Common aas 2-acyl-glycerophospho-ethanolamine acyltransferase CJJ81176_0955 227 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 121613546 Common - HAD-superfamily hydrolase, subfamily IIA CJJ81176_0337 75 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 121613140 Common - amino acid carrier protein CJJ81176_0912 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 121612776 Common - hypothetical protein CJJ81176_1404 155 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 121612937 Common cmeB RND efflux system, inner membrane transporter CmeB CJJ81176_0389 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 121612406 Common - iron ABC transporter, periplasmic iron-binding protein CJJ81176_0211 136 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 121613355 Common - DNA polymerase III subunit delta' CJJ81176_0612 12 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 121613276 Common fliL flagellar basal body-associated protein FliL CJJ81176_1407 36 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 121613454 Pathogen - hypothetical protein CJJ81176_0565 1 None None None 121613046 Common cysQ cysQ protein CJJ81176_1674 167 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 121612887 Pathogen - hypothetical protein CJJ81176_0835 1 None None None 121613016 Common - peptidase, putative CJJ81176_0488 153 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 121613746 Common rpsM 30S ribosomal protein S13 CJJ81176_1579 247 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 121613688 Common - hypothetical protein CJJ81176_0781 109 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 121612619 Common - hypothetical protein CJJ81176_0740 39 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 121612948 Common - hypothetical protein CJJ81176_1657 64 COG3019 COG3019, Predicted metal-binding protein General function prediction only 121613321 Pathogen - hypothetical protein CJJ81176_0234 1 None None None 121613347 Pathogen - hypothetical protein CJJ81176_0569 1 COG3030 FxsA, Protein affecting phage T7 exclusion by the F plasmid General function prediction only 121612644 Common gmk guanylate kinase CJJ81176_1192 212 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 121612316 Common - hypothetical protein CJJ81176_0294 2 None None None 121612582 Common - deoxyuridine triphosphatase domain protein CJJ81176_1444 12 None None None 121613653 Common - hypothetical protein CJJ81176_1428 5 None None None 121613681 Common - flagellin modification protein, PseA CJJ81176_1333 25 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 121612280 Common - cation ABC transporter, permease protein CJJ81176_0177 191 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 121612175 Common - iron ABC transporter, permease protein CJJ81176_0210 138 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 121612341 Pathogen - hypothetical protein CJJ81176_1659 1 None None None 121613612 Common - proline/betaine transporter, putative, authentic frameshift CJJ81176_1576 128 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 121612652 Common - hypothetical protein CJJ81176_0063 9 None None None 121612798 Common - tetrapyrrole methylase family protein CJJ81176_0190 208 COG0313 COG0313, Predicted methyltransferases General function prediction only 121612859 Common - leucyl aminopeptidase CJJ81176_0936 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 121613249 Common - heavy metal translocating P-type ATPase CJJ81176_1172 228 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 121612870 Common ccpA-2 cytochrome c551 peroxidase CJJ81176_0382 95 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 121613598 Common ceuB enterochelin ABC transporter, permease protein CJJ81176_1351 190 COG4606 CeuB, ABC-type enterochelin transport system, permease component Inorganic ion transport and metabolism 121612704 Common - cysteine-rich domain protein CJJ81176_0112 162 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 121613309 Common wlaB ABC transporter, permease/ATP-binding protein CJJ81176_1147 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 121612881 Pathogen - pathogenicity domain protein CJJ81176_0246 1 None None None 121613175 Common - putative outer-membrane protein CJJ81176_0764 55 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 121612600 Common - putative periplasmic protein CJJ81176_0529 24 None None None 121613232 Pathogen - lipoprotein, putative CJJ81176_0125 1 COG5633 COG5633, Predicted periplasmic lipoprotein General function prediction only 121613584 Common fdhB formate dehydrogenase, iron-sulfur subunit CJJ81176_1502 160 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 121613628 Common - hypothetical protein CJJ81176_0918 2 None None None 121613238 Common - methyl-accepting chemotaxis protein CJJ81176_0180 112 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 121613522 Common - conserved hypothetical protein, authentic frameshift CJJ81176_1605 12 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 121612243 Common rpsD 30S ribosomal protein S4 CJJ81176_1581 244 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 121612762 Common rpsT 30S ribosomal protein S20 CJJ81176_1598 162 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 121613390 Common - hypothetical protein CJJ81176_1628 7 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 121612128 Pathogen - hypothetical protein CJJ81176_1260 2 None None None 121612791 Common murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase CJJ81176_0458 210 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 121613550 Common trmD tRNA (guanine-N(1)-)-methyltransferase CJJ81176_0736 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 121612920 Common - hypothetical protein CJJ81176_0155 7 None None None 121613295 Common - hypothetical protein CJJ81176_1544 79 COG0701 COG0701, Predicted permeases General function prediction only 121612666 Common alaS alanyl-tRNA synthetase CJJ81176_0534 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121612533 Common purA adenylosuccinate synthetase CJJ81176_1490 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 121612446 Common hisS histidyl-tRNA synthetase CJJ81176_0786 238 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121612840 Pathogen - putative periplasmic protein CJJ81176_1255 1 None None None 121613632 Common - 3-oxoacyl-(acyl carrier protein) synthase III CJJ81176_1319 196 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 121613153 Pathogen - hypothetical protein CJJ81176_0092 1 None None None 121612994 Common - transcriptional regulator, putative CJJ81176_0597 12 COG2378 COG2378, Predicted transcriptional regulator Transcription 121612585 Common - putative sulfite oxidase subunit YedY CJJ81176_0403 126 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 121612186 Common - RrF2 family protein, putative CJJ81176_0891 139 COG1959 COG1959, Predicted transcriptional regulator Transcription 121612498 Pathogen - putative periplasmic protein CJJ81176_0524 1 None None None 121612919 Common fliS flagellar protein FliS CJJ81176_0574 71 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 121612196 Common - hypothetical protein CJJ81176_0555 12 None None None 121613478 Common prfA peptide chain release factor 1 CJJ81176_1599 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 121612393 Common kdsA 2-dehydro-3-deoxyphosphooctonate aldolase CJJ81176_0407 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 121613077 Common - hypothetical protein CJJ81176_1118 7 None None None 121612127 Common - putative glycosyl transferase CJJ81176_1436 5 COG4092 COG4092, Predicted glycosyltransferase involved in capsule biosynthesis Cell envelope biogenesis, outer membrane 121613714 Pathogen - hypothetical protein CJJ81176_1457 1 None None None 121612155 Common cysK cysteine synthase A CJJ81176_0920 219 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 121613425 Common - molybdopterin-guanine dinucleotide biosynthesis protein, putative CJJ81176_1349 52 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 121612436 Pathogen - lipoprotein, putative CJJ81176_0619 2 None None None 121613124 Common - hypothetical protein CJJ81176_0628 17 COG2515 Acd, 1-aminocyclopropane-1-carboxylate deaminase Amino acid transport and metabolism 121613149 Common - permease, putative CJJ81176_0965 153 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 121612911 Pathogen - hypothetical protein CJJ81176_0948 1 None None None 121613097 Common corA magnesium and cobalt transport protein CorA CJJ81176_0749 127 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 121613510 Common slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD CJJ81176_0150 133 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 121613483 Common - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family CJJ81176_1377 233 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 121612501 Common - sodium transporter, putative CJJ81176_0942 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 121613551 Common - molybdopterin converting factor, subunit 2 CJJ81176_1510 12 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 121612875 Common - anion transporter CJJ81176_0088 12 None None None 121612466 Common nuoM NADH-quinone oxidoreductase, M subunit CJJ81176_1552 204 COG1008 NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) Energy production and conversion 121613727 Common - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative CJJ81176_1592 109 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 121613720 Common - peptide ABC transporter, permease protein CJJ81176_1568 206 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 121613378 Common rpmA 50S ribosomal protein L27 CJJ81176_0130 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 121613260 Common nrdF ribonucleotide-diphosphate reductase subunit beta CJJ81176_0256 155 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 121613353 Common kpsE capsular polysaccharide ABC transporter CJJ81176_1439 49 COG3524 KpsE, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 121613707 Common - prophage Lp2 protein 6 CJJ81176_0657 39 COG4748 COG4748, Uncharacterized conserved protein Function unknown 121613634 Pathogen - hypothetical protein CJJ81176_1622 1 None None None 121612597 Common rpmJ 50S ribosomal protein L36 CJJ81176_1754 19 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 121613079 Common gltA citrate synthase CJJ81176_1675 194 COG0372 GltA, Citrate synthase Energy production and conversion 121613648 Common - ATP-dependent DNA helicase, putative CJJ81176_0798 230 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 121612812 Common gltX glutamyl-tRNA synthetase CJJ81176_1305 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 121613442 Common pyrC dihydroorotase CJJ81176_0286 88 COG0418 PyrC, Dihydroorotase Nucleotide transport and metabolism 121612742 Common - biotin biosynthesis protein BioC CJJ81176_0326 31 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 121613231 Common hipO hippurate hydrolase CJJ81176_1004 170 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 121613399 Pathogen - hypothetical protein CJJ81176_0758 1 None None None 121612819 Common atpH F0F1 ATP synthase subunit delta CJJ81176_0139 21 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 121612315 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase CJJ81176_0461 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 121613038 Common - NOL1/NOP2/sun family protein CJJ81176_0664 196 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 121613662 Common mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB CJJ81176_0858 68 COG1763 MobB, Molybdopterin-guanine dinucleotide biosynthesis protein Coenzyme metabolism 121612726 Pathogen - acyl carrier protein, putative CJJ81176_1320 1 None None None 121612110 Common pyrD dihydroorotate dehydrogenase 2 CJJ81176_0825 222 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 121613538 Common - hypothetical protein CJJ81176_0779 16 None None None 121612163 Common fbp fructose-1,6-bisphosphatase CJJ81176_0857 108 COG0158 Fbp, Fructose-1,6-bisphosphatase Carbohydrate transport and metabolism 121613625 Common sdhB succinate dehydrogenase iron-sulfur subunit CJJ81176_0434 209 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 121612159 Pathogen - hypothetical protein CJJ81176_0084 1 None None None 121613192 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA CJJ81176_1203 193 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 121612249 Common groEL chaperonin GroEL CJJ81176_1234 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 121612512 Common - hypothetical protein CJJ81176_0952 8 None None None 121613491 Common metX homoserine O-acetyltransferase CJJ81176_0023 207 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 121612580 Pathogen - hypothetical protein CJJ81176_0233 1 None None None 121613748 Common - antioxidant, AhpC/Tsa family CJJ81176_0356 218 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 121612758 Pathogen - hypothetical protein CJJ81176_0797 1 COG2433 COG2433, Uncharacterized conserved protein Function unknown 121613575 Common kpsM capsular polysaccharide ABC transporter, permease protein CJJ81176_1441 48 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 121612541 Common icd isocitrate dehydrogenase, NADP-dependent CJJ81176_0556 65 COG2838 Icd, Monomeric isocitrate dehydrogenase Energy production and conversion 121612832 Common infC translation initiation factor IF-3 CJJ81176_0239 209 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 121612298 Pathogen - acyl carrier protein, putative CJJ81176_1326 1 None None None 121612769 Common - hypothetical protein CJJ81176_0889 10 COG2404 COG2404, Predicted phosphohydrolase (DHH superfamily) General function prediction only 121612548 Common - flagellin family protein CJJ81176_0894 93 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 121613567 Common - carboxypeptidase CJJ81176_0634 171 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 121613693 Pathogen - HsdM CJJ81176_1540 2 None None None 121613199 Pathogen - hypothetical protein CJJ81176_1355 1 None None None 121613731 Common - transcriptional regulator, MerR family CJJ81176_1244 98 COG0789 SoxR, Predicted transcriptional regulators Transcription 121613437 Common atpC F0F1 ATP synthase subunit epsilon CJJ81176_0143 145 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 121612454 Common thiF thiamine biosynthesis protein ThiF CJJ81176_1067 224 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 121612426 Common - hypothetical protein CJJ81176_0187 6 None None None 121613084 Common dnaK chaperone protein DnaK CJJ81176_0775 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 121612527 Common - type I restriction-modification system, M subunit CJJ81176_1539 161 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 121613213 Common rnc ribonuclease III CJJ81176_1626 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 121612306 Common rbfA ribosome-binding factor A CJJ81176_0172 8 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 121613024 Common fdhD formate dehydrogenase accessory protein CJJ81176_1500 137 COG1526 FdhD, Uncharacterized protein required for formate dehydrogenase activity Energy production and conversion 121613336 Common - cytochrome C CJJ81176_0885 38 COG3258 COG3258, Cytochrome c Energy production and conversion 121613385 Pathogen - hypothetical protein CJJ81176_0243 1 None None None 121612668 Common porA major outer membrane protein CJJ81176_1275 3 None None None 121612690 Common - hypothetical protein CJJ81176_0868 7 None None None 121612334 Common - membrane-bound lytic murein transglycosylase D, putative CJJ81176_0673 116 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 121612457 Common - polyA polymerase family protein CJJ81176_0810 201 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 121613414 Common galU UTP-glucose-1-phosphate uridylyltransferase CJJ81176_1521 229 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 121612603 Common asd aspartate-semialdehyde dehydrogenase CJJ81176_1042 236 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 121613678 Pathogen - hypothetical protein CJJ81176_1208 1 None None None 121613275 Common - ABC transporter, ATP-binding protein/permease MsbA, putative CJJ81176_0824 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 121612751 Common dnaA chromosomal replication initiation protein CJJ81176_0027 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 121612266 Common - hypothetical protein CJJ81176_0030 7 None None None 121612716 Common - hypothetical protein CJJ81176_0220 77 COG1432 COG1432, Uncharacterized conserved protein Function unknown 121613461 Common nadD nicotinate (nicotinamide) nucleotide adenylyltransferase CJJ81176_1403 178 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 121612695 Common dusB tRNA-dihydrouridine synthase B CJJ81176_0158 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 121613469 Pathogen - hypothetical protein CJJ81176_1405 2 None None None 121612681 Common - conserved hypothetical protein, authentic frameshift CJJ81176_0109 26 COG2703 COG2703, Hemerythrin Inorganic ion transport and metabolism 121613067 Common ctsP transformation system protein CJJ81176_1466 4 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 121613368 Common hydA quinone-reactive Ni/Fe-hydrogenase, small subunit CJJ81176_1283 79 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 121612471 Common - peptide ABC transporter, periplasmic peptide-binding protein CJJ81176_1569 208 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 121612233 Common ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein CJJ81176_1594 196 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 121612273 Common nuoK NADH-quinone oxidoreductase, K subunit CJJ81176_1554 16 COG0713 NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) Energy production and conversion 121612905 Common - major antigenic peptide PEB4 CJJ81176_0624 159 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 121612200 Common - outer membrane efflux protein CJJ81176_0637 86 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 121613364 Pathogen - hypothetical protein CJJ81176_0770 1 None None None 121612484 Common - hypothetical protein CJJ81176_0854 6 None None None 121613700 Common flhA flagellar biosynthesis protein A CJJ81176_0890 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 121612673 Common thiH thiamine biosynthesis protein ThiH CJJ81176_1065 57 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 121612101 Common - di-/tripeptide transporter CJJ81176_0683 79 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 121612363 Common - oxidoreductase, putative CJJ81176_0439 72 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 121613185 Common modC molybdenum ABC transporter, ATP-binding protein CJJ81176_0322 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 121613224 Common thrB homoserine kinase CJJ81176_0169 99 COG0083 ThrB, Homoserine kinase Amino acid transport and metabolism 121613566 Pathogen - colicin E1 immunity protein CJJ81176_0394 1 None None None 121613289 Common - hypothetical protein CJJ81176_0676 1 None None None 121613506 Common - hypothetical protein CJJ81176_1475 30 COG3893 COG3893, Inactivated superfamily I helicase DNA replication, recombination, and repair 121613544 Common cutE apolipoprotein N-acyltransferase CJJ81176_1113 57 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 121613205 Common - hypothetical protein CJJ81176_0778 7 None None None 121613450 Pathogen - tram-like protein CJJ81176_0418 1 None None None 121612841 Pathogen - hypothetical protein CJJ81176_0193 1 None None None 121612826 Common - hypothetical protein CJJ81176_0474 26 COG2841 COG2841, Uncharacterized protein conserved in bacteria Function unknown 121612893 Common ppk polyphosphate kinase CJJ81176_1361 161 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 121613117 Common gyrA DNA gyrase subunit A CJJ81176_1046 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 121612547 Common plsX fatty acid/phospholipid synthesis protein CJJ81176_0351 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 121612917 Common - DNA polymerase III subunit epsilon CJJ81176_0477 139 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 121612475 Common purE phosphoribosylaminoimidazole carboxylase, catalytic subunit CJJ81176_0725 231 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 121613303 Common ilvE branched-chain amino acid aminotransferase CJJ81176_0296 216 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 121612140 Common - ribosomal large subunit pseudouridine synthases, RluA family CJJ81176_1296 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 121612945 Common - hypothetical protein CJJ81176_1250 44 COG1565 COG1565, Uncharacterized conserved protein Function unknown 121612429 Common - RNA methyltransferase, TrmH family CJJ81176_0913 159 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 121612739 Common - mechanosensitive ion channel family protein CJJ81176_1025 34 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 121612404 Common pckA phosphoenolpyruvate carboxykinase CJJ81176_0939 98 COG1866 PckA, Phosphoenolpyruvate carboxykinase (ATP) Energy production and conversion 121612687 Common ubiA prenyltransferase CJJ81176_0200 162 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 121613626 Common pglD general glycosylation pathway protein CJJ81176_1140 96 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 121612967 Common ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase CJJ81176_0709 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 121612981 Common - galactosyltransferase CJJ81176_1153 71 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 121612211 Common - amino acid ABC transporter, permease protein PEB1 CJJ81176_0927 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 121612256 Pathogen - hypothetical protein CJJ81176_1347 1 None None None 121612617 Common mnmC 5-methylaminomethyl-2-thiouridine methyltransferase CJJ81176_1284 68 COG4121 COG4121, Uncharacterized conserved protein Function unknown 121612638 Common ruvB Holliday junction DNA helicase B CJJ81176_1364 214 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 121612441 Common rplJ 50S ribosomal protein L10 CJJ81176_0507 146 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 121612332 Common - DNA ligase CJJ81176_1665 32 COG1793 CDC9, ATP-dependent DNA ligase DNA replication, recombination, and repair 121612828 Common - cytochrome P450 family protein CJJ81176_1410 75 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 121613169 Common - aspartate aminotransferase CJJ81176_0186 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 121612925 Pathogen - putative periplasmic protein CJJ81176_1623 1 None None None 121612105 Common lpxB lipid-A-disaccharide synthase CJJ81176_0314 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 121612587 Common - hypothetical protein CJJ81176_0586 6 None None None 121613122 Common - hypothetical protein CJJ81176_0638 15 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 121613409 Common - hypothetical protein CJJ81176_0479 3 None None None 121613387 Common - putative integral membrane protein CJJ81176_0071 4 None None None 121613744 Common nadE NAD+ synthetase CJJ81176_0831 230 COG0171 NadE, NAD synthase Coenzyme metabolism 121613234 Common - PhnA domain protein CJJ81176_0216 105 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 121613051 Common - hypothetical protein CJJ81176_0856 6 None None None 121612789 Common pepD aminoacyl-histidine dipeptidase CJJ81176_0999 52 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 121613113 Common - putative methyltransferase CJJ81176_1418 49 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 121613706 Common gltB glutamate synthase, large subunit CJJ81176_0033 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 121612968 Common cdsA phosphatidate cytidylyltransferase CJJ81176_1346 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 121613187 Common - hypothetical protein CJJ81176_1107 4 None None None 121613376 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase CJJ81176_0321 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 121612459 Common - lipoprotein, putative CJJ81176_0997 2 None None None 121612808 Common pheT phenylalanyl-tRNA synthetase subunit beta CJJ81176_0905 215 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 121612323 Common - RNA pseudouridine synthase family protein CJJ81176_0731 214 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 121613072 Common recN DNA repair protein RecN CJJ81176_0670 196 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 121612139 Common - radical SAM enzyme, Cfr family CJJ81176_0007 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 121612132 Common - TOBE domain protein CJJ81176_0324 3 COG3585 MopI, Molybdopterin-binding protein Coenzyme metabolism 121612375 Pathogen - permease, putative CJJ81176_1543 1 None None None 121613326 Common rpiB ribose 5-phosphate isomerase B CJJ81176_0932 125 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 121613201 Common ftsY signal recognition particle-docking protein FtsY CJJ81176_1221 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 121612608 Pathogen - hypothetical protein CJJ81176_0231 1 None None None 121612416 Pathogen - putative periplasmic protein CJJ81176_0992 1 None None None 121613733 Pathogen - hypothetical protein CJJ81176_0175 2 COG4268 McrC, McrBC 5-methylcytosine restriction system component Defense mechanisms 121613643 Common - hypothetical protein CJJ81176_0083 39 COG2703 COG2703, Hemerythrin Inorganic ion transport and metabolism 121612534 Common truB tRNA pseudouridine synthase B CJJ81176_1120 231 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 121612235 Common - putative sugar transferase CJJ81176_1434 28 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 121612784 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase CJJ81176_0874 208 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 121612996 Common rpsH 30S ribosomal protein S8 CJJ81176_1690 231 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 121613428 Common dnaE DNA polymerase III subunit alpha CJJ81176_0741 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 121612434 Common - transglycosylase domain protein CJJ81176_0070 197 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 121612871 Common purB-2 adenylosuccinate lyase CJJ81176_1393 230 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 121612184 Common - cvpA family protein CJJ81176_0422 7 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 121613151 Common - hypothetical protein CJJ81176_0579 19 None None None 121613519 Common fliG flagellar motor switch protein G CJJ81176_0341 125 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 121613639 Common - hypothetical protein CJJ81176_1385 1 None None None 121612913 Common algC phosphomannomutase/phosphoglucomutase CJJ81176_1406 241 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 121612469 Common trpC indole-3-glycerol phosphate synthase CJJ81176_0519 219 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 121612157 Common - trkA domain protein CJJ81176_1027 10 COG3400 COG3400, Uncharacterized protein conserved in bacteria Function unknown 121613001 Common - major antigenic peptide PEB3 CJJ81176_0315 24 COG4588 AcfC, Accessory colonization factor AcfC, contains ABC-type periplasmic domain General function prediction only 121613729 Common - hypothetical protein CJJ81176_1312 14 COG4310 COG4310, Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain General function prediction only 121612164 Pathogen - hypothetical protein CJJ81176_1684 4 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 121612351 Common rpoC DNA-directed RNA polymerase, beta' subunit CJJ81176_0510 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 121613485 Common - ATPase, AAA family protein CJJ81176_0401 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 121613357 Common - nucleotide phosphoribosyltransferase, putative CJJ81176_1373 55 COG2236 COG2236, Predicted phosphoribosyltransferases General function prediction only 121613206 Common dnaX DNA polymerase III subunits gamma and tau CJJ81176_1174 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 121612125 Common nuoA NADH dehydrogenase subunit A CJJ81176_1564 10 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 121612194 Common - hypothetical protein CJJ81176_1059 38 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 121612193 Common - polyprenyl synthetase family protein CJJ81176_0566 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 121612464 Common lolD lipoprotein releasing system ATP-binding protein LolD CJJ81176_1293 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 121613686 Common - hypothetical protein CJJ81176_0306 7 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 121613135 Pathogen - hypothetical protein CJJ81176_0589 1 None None None 121613495 Common flhF flagellar biosynthesis regulator FlhF CJJ81176_0102 246 COG1419 FlhF, Flagellar GTP-binding protein Cell motility and secretion 121612877 Common upp uracil phosphoribosyltransferase CJJ81176_1303 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 121612282 Common - hypothetical protein CJJ81176_0982 145 COG0759 COG0759, Uncharacterized conserved protein Function unknown 121613609 Common efp elongation factor P CJJ81176_0576 224 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 121613471 Common - hypothetical protein CJJ81176_1227 7 None None None 121612508 Common napA periplasmic nitrate reductase, large subunit CJJ81176_0801 180 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 121613227 Common fliH flagellar assembly protein H CJJ81176_0342 19 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 121613342 Common pyrF orotidine 5'-phosphate decarboxylase CJJ81176_0404 168 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 121612952 Common katA catalase CJJ81176_1387 122 COG0753 KatE, Catalase Inorganic ion transport and metabolism 121613656 Pathogen - hypothetical protein CJJ81176_0293 1 None None None 121612595 Common - hypothetical protein CJJ81176_1458 2 None None None 121612932 Common psd phosphatidylserine decarboxylase CJJ81176_0863 90 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 121613682 Common - integral membrane protein, TerC family CJJ81176_0217 103 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 121612834 Common - putative sugar transferase CJJ81176_1435 3 None None None 121612398 Common proS prolyl-tRNA synthetase CJJ81176_0568 247 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121612201 Common - iron permease, FTR1 family CJJ81176_1649 81 COG0672 FTR1, High-affinity Fe2+/Pb2+ permease Inorganic ion transport and metabolism 121612557 Common gyrB DNA gyrase subunit B CJJ81176_0029 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 121613501 Common metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase CJJ81176_1216 140 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 121613655 Common valS valyl-tRNA synthetase CJJ81176_0796 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121612650 Common selD selenide, water dikinase CJJ81176_1496 121 COG0709 SelD, Selenophosphate synthase Amino acid transport and metabolism 121613600 Pathogen - hypothetical protein CJJ81176_1358 2 COG3295 COG3295, Uncharacterized protein conserved in bacteria Function unknown 121612722 Pathogen - hypothetical protein CJJ81176_0815 1 None None None 121612779 Pathogen - hypothetical protein CJJ81176_1263 1 None None None 121612883 Common metC cystathionine beta-lyase CJJ81176_1392 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 121613129 Common - iron ABC transporter, ATP binding subunit CJJ81176_0209 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 121613392 Common - serine protease, subtilase family CJJ81176_1367 65 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 121612625 Common - non-heme iron protein, hemerythrin family CJJ81176_1237 44 COG2703 COG2703, Hemerythrin Inorganic ion transport and metabolism 121612223 Common pflA paralyzed flagella protein PflA CJJ81176_1550 4 None None None 121613196 Common - bifunctional riboflavin kinase/FMN adenylyltransferase CJJ81176_0617 210 COG0196 RibF, FAD synthase Coenzyme metabolism 121613293 Common - RNA pseudouridine synthase family protein CJJ81176_0049 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 121613577 Common - hypothetical protein CJJ81176_1193 7 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 121613170 Common - DNA-binding response regulator, putative CJJ81176_1595 9 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 121613194 Common - AcrB/AcrD/AcrF family protein CJJ81176_1052 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 121612183 Common folC folC bifunctional protein CJJ81176_1106 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 121612480 Common serC phosphoserine aminotransferase CJJ81176_0348 111 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 121612977 Common - hypothetical protein CJJ81176_1631 5 None None None 121613280 Common - PseE CJJ81176_1337 20 COG2604 COG2604, Uncharacterized protein conserved in bacteria Function unknown 121612268 Common secA preprotein translocase subunit SecA CJJ81176_0966 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 121613570 Common argD acetylornithine aminotransferase CJJ81176_0252 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 121612313 Common - hypothetical protein CJJ81176_0280 8 None None None 121612818 Common - PseD CJJ81176_1336 17 COG2604 COG2604, Uncharacterized protein conserved in bacteria Function unknown 121613088 Common - peptidase, A24 family CJJ81176_0842 31 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 121613115 Common - DedA family protein CJJ81176_1224 81 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 121613695 Common fliN flagellar motor switch protein CJJ81176_0375 119 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 121613431 Common purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase CJJ81176_0976 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 121612424 Pathogen - hypothetical protein CJJ81176_0765 1 None None None 121613661 Common nth endonuclease III CJJ81176_0623 238 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 121613623 Common clpB ATP-dependent chaperone protein ClpB CJJ81176_0537 231 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 121612230 Common - ABC transporter, ATP-binding protein CJJ81176_1654 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 121613215 Common surE stationary phase survival protein SurE CJJ81176_0317 186 COG0496 SurE, Predicted acid phosphatase General function prediction only 121612456 Common - hypothetical protein CJJ81176_0480 4 None None None 121613242 Common - methyl-accepting chemotaxis protein CJJ81176_1204 82 COG2202 AtoS, FOG: PAS/PAC domain Signal transduction mechanisms 121612510 Common arsB arsenical pump membrane protein CJJ81176_1202 83 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 121612622 Common - hypothetical protein CJJ81176_0395 6 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 121612895 Common - conserved hypothetical protein, degenerate CJJ81176_0759 3 None None None 121613722 Common - ATP-NAD kinase, putative CJJ81176_0669 240 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 121613301 Common - potassium-transporting ATPase, A subunit, degenerate CJJ81176_0699 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 121612308 Pathogen - beta-1,3-galactosyltransferase CJJ81176_1155 1 None None None 121612137 Common oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB CJJ81176_0562 110 COG1013 PorB, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Energy production and conversion 121613456 Common - rod shape-determining protein MreC CJJ81176_0304 12 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 121613040 Common rpoB DNA-directed RNA polymerase subunit beta CJJ81176_0509 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 121612203 Common ligA NAD-dependent DNA ligase LigA CJJ81176_0614 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 121612358 Common pglC general glycosylation pathway protein CJJ81176_1141 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 121613370 Common - hypothetical protein CJJ81176_0176 22 COG4268 McrC, McrBC 5-methylcytosine restriction system component Defense mechanisms 121612659 Common lysS lysyl-tRNA synthetase CJJ81176_0424 249 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 121612903 Common - peptidase, M23/M37 family CJJ81176_0166 165 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 121612519 Common truD tRNA pseudouridine synthase D CJJ81176_1450 84 COG0585 COG0585, Uncharacterized conserved protein Function unknown 121613646 Common - modification methylase, HemK family CJJ81176_0745 184 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 121613262 Common - ATPase, ParA family CJJ81176_0101 238 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 121613361 Common pyrE orotate phosphoribosyltransferase CJJ81176_0258 104 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 121612112 Pathogen - hypothetical protein CJJ81176_1005 1 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 121613101 Common - hypothetical protein CJJ81176_0441 15 None None None 121612728 Common - hypothetical protein CJJ81176_1445 5 None None None 121612866 Common - hypothetical protein CJJ81176_1262 1 None None None 121613444 Common - hypothetical protein CJJ81176_0161 165 COG1576 COG1576, Uncharacterized conserved protein Function unknown 121613531 Common aroB 3-dehydroquinate synthase CJJ81176_1026 210 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 121613034 Common fumC fumarate hydratase CJJ81176_1366 222 COG0114 FumC, Fumarase Energy production and conversion 121612473 Common - hypothetical protein CJJ81176_0202 61 COG1971 COG1971, Predicted membrane protein Function unknown 121613104 Common pgpA phosphatidylglycerophosphatase A CJJ81176_1597 82 COG1267 PgpA, Phosphatidylglycerophosphatase A and related proteins Lipid metabolism 121613269 Common - hypothetical protein CJJ81176_1313 14 COG4310 COG4310, Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain General function prediction only 121613493 Common - peptidyl-prolyl cis-trans isomerase D, homolog CJJ81176_0717 97 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 121613060 Pathogen - hypothetical protein CJJ81176_1429 1 None None None 121612365 Common - hypothetical protein CJJ81176_0706 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 121612275 Common frdA fumarate reductase CJJ81176_0433 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 121612802 Common - hypothetical protein CJJ81176_0986 34 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 121612506 Common - acetyltransferase, GNAT family CJJ81176_0250 32 COG0456 RimI, Acetyltransferases General function prediction only 121613711 Common - hypothetical protein CJJ81176_1667 2 None None None 121613251 Common - hypothetical protein CJJ81176_0420 7 None None None 121612764 Common msrA methionine sulfoxide reductase A CJJ81176_0665 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 121613083 Pathogen - hypothetical protein CJJ81176_0763 1 None None None 121613564 Pathogen cdtA cytolethal distending toxin, subunit A CJJ81176_0116 5 None None None 121613508 Common - CMP-Neu5Ac synthetase CJJ81176_1161 57 COG1083 NeuA, CMP-N-acetylneuraminic acid synthetase Cell envelope biogenesis, outer membrane 121612756 Common - sodium/dicarboxylate symporter CJJ81176_0052 143 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 121612545 Common - flagellin CJJ81176_1339 123 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 121613066 Common - peptidase, M24 family CJJ81176_0681 205 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 121613592 Common tolB translocation protein TolB CJJ81176_0147 125 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 121612988 Pathogen - hypothetical protein CJJ81176_0951 1 None None None 121612261 Common - aspartate racemase, putative CJJ81176_0120 84 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 121612734 Pathogen - conserved hypothetical protein, degenerate CJJ81176_0523 1 None None None 121613014 Common - hypothetical protein CJJ81176_0947 10 COG1598 COG1598, Uncharacterized conserved protein Function unknown 121612979 Common - hypothetical protein CJJ81176_0713 57 COG1002 COG1002, Type II restriction enzyme, methylase subunits Defense mechanisms 121613524 Common - hypothetical protein CJJ81176_0580 18 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 121612661 Common lspA lipoprotein signal peptidase CJJ81176_0384 165 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 121612749 Common - inosine-uridine preferring nucleoside hydrolase family protein CJJ81176_0364 82 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 121613173 Common sdhA succinate dehydrogenase, flavoprotein subunit CJJ81176_0463 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 121613334 Common - SCO1/SenC family protein CJJ81176_0919 65 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 121612714 Common greA transcription elongation factor GreA CJJ81176_0313 204 COG0782 GreA, Transcription elongation factor Transcription 121612525 Common carB carbamoyl phosphate synthase large subunit CJJ81176_0305 237 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 121612774 Common kpsF arabinose-5-phosphate isomerase CJJ81176_1437 172 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 121613026 Common tatB sec-independent translocase CJJ81176_0607 8 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 121612935 Common tig trigger factor CJJ81176_0224 215 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 121612740 Common - putative cytochrome C-type haem-binding periplasmic protein CJJ81176_0292 24 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 121612296 Common - hypothetical protein CJJ81176_1600 15 COG0748 HugZ, Putative heme iron utilization protein Inorganic ion transport and metabolism 121613672 Common nuoH NADH dehydrogenase subunit H CJJ81176_1557 192 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 121613366 Common hisD histidinol dehydrogenase CJJ81176_1585 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 121612955 Common - hypothetical protein CJJ81176_1272 1 None None None 121612329 Common - 4-oxalocrotonate tautomerase family protein CJJ81176_0297 20 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 121613273 Common - peptidase, M16 family CJJ81176_0826 188 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 121612348 Common - hypothetical protein CJJ81176_1478 2 None None None 121612448 Common - flavodoxin-like fold domain protein CJJ81176_1530 38 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 121612301 Common - hypothetical protein CJJ81176_1559 2 None None None 121613463 Common rplO 50S ribosomal protein L15 CJJ81176_1686 66 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 121612835 Common - potassium-transporting ATPase subunit B CJJ81176_0700 232 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism 121612386 Common - ATP-sulfurylase family protein CJJ81176_1596 53 COG2046 MET3, ATP sulfurylase (sulfate adenylyltransferase) Inorganic ion transport and metabolism 121613480 Common hypB hydrogenase accessory protein HypB CJJ81176_0652 155 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 121613536 Common flhB flagellar biosynthesis protein FlhB CJJ81176_0357 129 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 121613252 Common ccoP cytochrome c oxidase, cbb3-type, subunit III CJJ81176_1479 76 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 121613057 Common - hypothetical protein CJJ81176_1317 3 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 121612723 Common pebC amino acid ABC transporter, ATP-binding protein PEB1 CJJ81176_0929 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 121613424 Common - hypothetical protein CJJ81176_1177 2 None None None 121612102 Common - cytochrome c family protein, degenerate CJJ81176_0884 35 COG3258 COG3258, Cytochrome c Energy production and conversion 121612354 Common yajC preprotein translocase subunit YajC CJJ81176_1112 168 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 121613580 Common - ABC transporter, permease protein CJJ81176_1653 21 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 121612856 Common coaBC bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase CJJ81176_0839 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 121613685 Common ccoO cytochrome c oxidase, cbb3-type, subunit II CJJ81176_1481 82 COG2993 CcoO, Cbb3-type cytochrome oxidase, cytochrome c subunit Energy production and conversion 121613455 Common - hypothetical protein CJJ81176_0729 31 COG1579 COG1579, Zn-ribbon protein, possibly nucleic acid-binding General function prediction only 121612894 Common fcl GDP-fucose synthetase CJJ81176_1427 146 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 121612795 Common - hypothetical protein CJJ81176_0443 116 COG2353 COG2353, Uncharacterized conserved protein Function unknown 121612978 Pathogen - putative glycosyltransferase CJJ81176_1421 1 None None None 121612397 Common uppS undecaprenyl diphosphate synthase CJJ81176_0841 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 121613300 Common - lipoprotein, putative CJJ81176_1092 9 COG4105 ComL, DNA uptake lipoprotein General function prediction only 121612246 Common fliP flagellar biosynthesis protein FliP CJJ81176_0837 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 121613171 Common priA primosome assembly protein PriA CJJ81176_0707 202 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 121613203 Common - molybdopterin oxidoreductase family protein CJJ81176_0031 63 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 121613394 Pathogen - hypothetical protein CJJ81176_0867 1 None None None 121612326 Common cysS cysteinyl-tRNA synthetase CJJ81176_0823 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121612487 Common - hypothetical protein CJJ81176_1003 29 COG3022 COG3022, Uncharacterized protein conserved in bacteria Function unknown 121612706 Common - MotA/TolQ/ExbB proton channel family protein CJJ81176_0144 138 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 121612566 Common hypD hydrogenase expression/formation protein HypD CJJ81176_0654 109 COG0409 HypD, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 121613718 Common - hypothetical protein CJJ81176_1073 2 None None None 121613594 Common ribE riboflavin synthase subunit alpha CJJ81176_1231 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 121613474 Common - Inositol monophosphatase family protein CJJ81176_0163 59 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 121613070 Common - hydrolase, putative CJJ81176_1169 127 COG0241 HisB, Histidinol phosphatase and related phosphatases Amino acid transport and metabolism 121613723 Pathogen - hypothetical protein CJJ81176_1218 1 None None None 121612677 Common - cation efflux family protein CJJ81176_1178 204 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 121612879 Common purQ phosphoribosylformylglycinamidine synthase subunit I CJJ81176_0542 232 COG0047 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain Nucleotide transport and metabolism 121612192 Pathogen - hypothetical protein CJJ81176_0887 1 None None None 121613329 Common tyrS tyrosyl-tRNA synthetase CJJ81176_1287 239 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121612199 Common rpsP 30S ribosomal protein S16 CJJ81176_0733 210 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 121612983 Common eno phosphopyruvate hydratase CJJ81176_1668 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 121612782 Common gidB methyltransferase GidB CJJ81176_1015 147 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 121612915 Common - iron-sulfur cluster-binding domain protein CJJ81176_1379 47 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 121612844 Common rpsU 30S ribosomal protein S21 CJJ81176_0393 82 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 121613589 Common - transporter, putative CJJ81176_1256 110 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 121612990 Common aroQ 3-dehydroquinate dehydratase CJJ81176_0104 170 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 121613048 Common nrdA ribonucleotide-diphosphate reductase subunit alpha CJJ81176_0051 218 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 121612495 Pathogen - conserved hypothetical protein, authentic frameshift CJJ81176_0596 2 None None None 121613421 Common nhaA-1 Na+/H+ antiporter NhaA CJJ81176_1645 107 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 121612900 Common - multidrug resistance efflux transporter, putative CJJ81176_1378 154 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 121613197 Pathogen - hypothetical protein CJJ81176_1449 1 None None None 121613555 Common hemE uroporphyrinogen decarboxylase CJJ81176_1258 181 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 121612182 Common cydA cytochrome d ubiquinol oxidase, subunit I CJJ81176_0118 166 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 121612123 Common napL napL protein CJJ81176_0805 8 None None None 121613358 Common - chromosome partitioning protein, ParA family CJJ81176_0135 232 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 121612670 Common rplA 50S ribosomal protein L1 CJJ81176_0506 237 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 121613093 Common - hypothetical protein CJJ81176_1488 10 COG3334 COG3334, Uncharacterized conserved protein Function unknown 121612874 Common - hypothetical protein CJJ81176_1271 37 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 121612551 Common rpmI 50S ribosomal protein L35 CJJ81176_0269 101 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 121613141 Common - thiamine monophosphate kinase CJJ81176_1451 184 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 121613344 Common nuoN NADH-quinone oxidoreductase, N subunit CJJ81176_1551 209 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 121612227 Common - membrane-associated zinc metalloprotease, putative CJJ81176_1086 210 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 121612909 Common - GlnD family protein CJJ81176_1369 9 COG2844 GlnD, UTP:GlnB (protein PII) uridylyltransferase Posttranslational modification, protein turnover, chaperones 121613325 Common thiC thiamine biosynthesis protein ThiC CJJ81176_0478 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 121612593 Common cheR chemotaxis protein methyltransferase CheR CJJ81176_0930 149 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 121612321 Common - GTP-binding protein CJJ81176_0435 44 COG0486 ThdF, Predicted GTPase General function prediction only 121612150 Common - hypothetical protein CJJ81176_0450 7 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 121612340 Common rplB 50S ribosomal protein L2 CJJ81176_1701 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 121612930 Common groES co-chaperonin GroES CJJ81176_1233 215 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 121613641 Common sppA signal peptide peptidase SppA, 36K type CJJ81176_0106 190 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 121613316 Common coaE dephospho-CoA kinase CJJ81176_1515 200 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 121613373 Common mfd transcription-repair coupling factor CJJ81176_1103 219 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 121612998 Common uvrA excinuclease ABC subunit A CJJ81176_0366 240 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 121613657 Common pglH general glycosylation pathway protein CJJ81176_1146 169 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 121612528 Common - lipoprotein, NLPA family CJJ81176_0791 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 121613159 Common - hypothetical protein CJJ81176_1633 136 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 121613602 Common - chemotaxis protein MotB, putative CJJ81176_0627 58 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 121612309 Common kgtP alpha-ketoglutarate permease CJJ81176_1606 140 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 121612295 Common - hypothetical protein CJJ81176_1618 4 None None None 121612816 Common motB flagellar motor protein MotB CJJ81176_0358 45 COG1360 MotB, Flagellar motor protein Cell motility and secretion 121612823 Common dcuB anaerobic C4-dicarboxylate transporter CJJ81176_0697 36 COG2704 DcuB, Anaerobic C4-dicarboxylate transporter General function prediction only 121612237 Common frr ribosome recycling factor CJJ81176_0259 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 121613751 Common - ABC transporter, permease protein, putative CJJ81176_1637 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 121612574 Pathogen - hypothetical protein CJJ81176_0078 1 None None None 121612482 Common - hypothetical protein CJJ81176_0870 7 None None None 121613351 Common csrA carbon storage regulator CJJ81176_1121 10 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 121612218 Common ldh L-lactate dehydrogenase CJJ81176_1182 146 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 121612685 Common - lipopolysaccharide core biosynthesis protien, putative CJJ81176_0010 8 None None None 121612939 Common lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase CJJ81176_0167 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 121612467 Common cmeC RND efflux system, outer membrane lipoprotein CmeC CJJ81176_0388 123 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 121612639 Pathogen - arsenical resistance operon repressor CJJ81176_1546 1 None None None 121613006 Common chuA TonB-dependent heme receptor CJJ81176_1601 118 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 121613402 Common - hypothetical protein CJJ81176_1181 37 COG2966 COG2966, Uncharacterized conserved protein Function unknown 121613549 Common dxs 1-deoxy-D-xylulose-5-phosphate synthase CJJ81176_0343 212 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 121613133 Common - hypothetical protein CJJ81176_0843 58 COG0795 COG0795, Predicted permeases General function prediction only 121613749 Common - ABC transporter, ATP-binding protein CJJ81176_1638 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 121613163 Common - sialic acid synthase CJJ81176_1158 77 COG2089 SpsE, Sialic acid synthase Cell envelope biogenesis, outer membrane 121612961 Common purN phosphoribosylglycinamide formyltransferase CJJ81176_0218 218 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 121612616 Pathogen - hypothetical protein CJJ81176_0244 4 None None None 121613283 Pathogen - hypothetical protein CJJ81176_1512 2 None None None 121613381 Common - hypothetical protein CJJ81176_0821 4 None None None 121613619 Common ftsZ cell division protein FtsZ CJJ81176_0719 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 121613332 Pathogen - hypothetical protein CJJ81176_1747 1 None None None 121613407 Common arsR arsenical resistance operon repressor CJJ81176_1545 36 COG0640 ArsR, Predicted transcriptional regulators Transcription 121612258 Common - DNA/RNA non-specific endonuclease CJJ81176_0622 37 COG1864 NUC1, DNA/RNA endonuclease G, NUC1 Nucleotide transport and metabolism 121612649 Common - putative homolog of BLC protein CJJ81176_1532 63 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 121613128 Common - hypothetical protein CJJ81176_0956 6 None None None 121612630 Common trmE tRNA modification GTPase TrmE CJJ81176_0979 223 COG0486 ThdF, Predicted GTPase General function prediction only 121612699 Pathogen - hypothetical protein CJJ81176_0886 1 None None None 121612216 Common purB-1 adenylosuccinate lyase CJJ81176_0050 236 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 121612787 Common - hypothetical protein CJJ81176_0267 2 None None None 121613028 Common - hypothetical protein CJJ81176_0543 7 None None None 121612663 Common ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase CJJ81176_0903 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 121612612 Common ctsE general secretory pathway protein E CJJ81176_1464 176 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 121612222 Common fliQ flagellar biosynthesis protein FliQ CJJ81176_1671 87 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 121612950 Common - iron-sulfur cluster-binding domain protein CJJ81176_1009 174 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 121612755 Common - cytochrome oxidase maturation protein, cbb3-type, putative CJJ81176_1171 3 COG3197 FixS, Uncharacterized protein, possibly involved in nitrogen fixation Inorganic ion transport and metabolism 121612747 Common uvrB excinuclease ABC subunit B CJJ81176_0703 226 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 121612778 Common - hypothetical protein CJJ81176_0274 5 None None None 121612607 Pathogen - hypothetical protein CJJ81176_0588 1 None None None 121613534 Common - fibronectin type III domain protein CJJ81176_1295 20 COG3401 COG3401, Fibronectin type 3 domain-containing protein General function prediction only 121612640 Common trpD anthranilate synthase component II CJJ81176_0370 238 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 121613418 Common - hypothetical protein CJJ81176_1572 17 COG3302 DmsC, DMSO reductase anchor subunit General function prediction only 121613270 Common - sodium/hydrogen exchanger family protein CJJ81176_1245 206 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 121612766 Common - conserved hypothetical protein, degenerate CJJ81176_1541 53 COG2910 COG2910, Putative NADH-flavin reductase General function prediction only 121612178 Common cjaA CjaA protein CJJ81176_1001 175 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 121612283 Common prmA ribosomal protein L11 methyltransferase CJJ81176_1135 175 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 121613674 Common waaV lipooligosaccharide biosynthesis glycosyltransferase CJJ81176_1163 106 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 121612171 Pathogen - porin domain protein CJJ81176_1040 1 None None None 121613410 Common rpmB 50S ribosomal protein L28 CJJ81176_0475 167 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 121612624 Common - hypothetical protein CJJ81176_0257 7 COG1714 COG1714, Predicted membrane protein/domain Function unknown 121613668 Common - hypothetical protein CJJ81176_1460 11 None None None 121612712 Common pssA CDP-diacylglycerol--serine O-phosphatidyltransferase CJJ81176_1132 156 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 121612388 Common rpmH 50S ribosomal protein L34 CJJ81176_0984 198 COG0230 RpmH, Ribosomal protein L34 Translation, ribosomal structure and biogenesis 121613131 Pathogen - non-heme iron protein, hemerythrin family CJJ81176_0108 1 None None None 121613356 Common dmsB dimethylsulfoxide reductase, chain B CJJ81176_1571 162 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 121613509 Common - hypothetical protein CJJ81176_1670 38 COG2107 COG2107, Predicted periplasmic solute-binding protein General function prediction only 121612536 Common ftsA cell division protein FtsA CJJ81176_0718 176 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 121612586 Common - hypothetical protein CJJ81176_1321 3 None None None 121612924 Common fliY flagellar motor switch protein FliY CJJ81176_0097 116 COG1776 CheC, Chemotaxis protein CheC, inhibitor of MCP methylation Cell motility and secretion / Signal transduction mechanisms 121613258 Common ssb single-strand DNA-binding protein CJJ81176_1089 191 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 121612367 Pathogen - hypothetical protein CJJ81176_0212 1 None None None 121612270 Common frdC fumarate reductase, cytochrome b subunit CJJ81176_0432 10 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 121613180 Common ctsG transformation system protein CJJ81176_1342 30 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 121613284 Pathogen - hypothetical protein CJJ81176_0045 1 None None None 121613465 Common - endoribonuclease L-PSP family protein CJJ81176_0349 130 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 121613487 Common fabF 3-oxoacyl-(acyl carrier protein) synthase II CJJ81176_0469 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 121612303 Common - PP-loop family protein CJJ81176_0153 165 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 121612277 Common fliD flagellar capping protein CJJ81176_0573 93 COG1345 FliD, Flagellar capping protein Cell motility and secretion 121612862 Common - ABC transporter, permease protein CJJ81176_1652 31 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 121613228 Common accB acetyl-CoA carboxylase, biotin carboxyl carrier protein CJJ81176_1308 179 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 121613209 Common - putative methyltransferase CJJ81176_1419 35 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 121613075 Common pcm protein-L-isoaspartate O-methyltransferase CJJ81176_0253 156 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 121612166 Common - hypothetical protein CJJ81176_0704 4 None None None 121613562 Common - hypothetical protein CJJ81176_1513 17 COG3950 COG3950, Predicted ATP-binding protein involved in virulence General function prediction only 121612736 Pathogen - hypothetical protein CJJ81176_1055 1 None None None 121613638 Common - malate:quinone oxidoreductase, putative CJJ81176_0416 69 COG0579 COG0579, Predicted dehydrogenase General function prediction only 121612837 Common pbpA penicillin-binding protein 1A CJJ81176_0536 206 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 121612523 Common - potassium uptake protein, TrkH family CJJ81176_1300 89 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 121613741 Common flgA flagellar basal body P-ring biosynthesis protein FlgA CJJ81176_0790 5 COG1261 FlgA, Flagellar basal body P-ring biosynthesis protein Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 121612251 Common - hypothetical protein CJJ81176_0462 11 COG5015 COG5015, Uncharacterized conserved protein Function unknown 121613445 Common fbaA fructose-bisphosphate aldolase CJJ81176_0625 172 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 121612360 Common - hypothetical protein CJJ81176_1011 4 None None None 121613263 Pathogen - hypothetical protein CJJ81176_0368 1 None None None 121612462 Pathogen - hypothetical protein CJJ81176_0448 1 None None None 121613496 Common - motility accessory factor CJJ81176_1340 17 COG2604 COG2604, Uncharacterized protein conserved in bacteria Function unknown 121612428 Common - MiaB-like tRNA modifying enzyme CJJ81176_1024 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 121613264 Common nuoB NADH dehydrogenase subunit B CJJ81176_1563 192 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 121613189 Pathogen - hypothetical protein CJJ81176_0447 1 None None None 121613735 Common - hypothetical protein CJJ81176_0345 1 None None None 121613195 Common moaC molybdenum cofactor biosynthesis protein C CJJ81176_0279 195 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 121613218 Common infB translation initiation factor IF-2 CJJ81176_0171 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 121613103 Common rpsA 30S ribosomal protein S1 CJJ81176_0902 219 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 121612868 Common - hypothetical protein CJJ81176_1442 18 COG3787 COG3787, Uncharacterized protein conserved in bacteria Function unknown 121612847 Common - major facilitator family protein CJJ81176_0866 73 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 121612114 Common htpG heat shock protein 90 CJJ81176_0546 149 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 121613440 Common rplQ 50S ribosomal protein L17 CJJ81176_1583 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 121612319 Common - hypothetical protein CJJ81176_1477 5 None None None 121613246 Common - MerR family transcription regulator CJJ81176_1547 51 COG0789 SoxR, Predicted transcriptional regulators Transcription 121612414 Common cysE serine acetyltransferase CJJ81176_0784 208 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 121613683 Common - hypothetical protein CJJ81176_1682 8 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 121613161 Pathogen - putative MCP-domain signal transduction protein CJJ81176_0271 1 None None None 121612560 Common - multidrug resistance protein, SMR family CJJ81176_1189 43 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 121612721 Common rpoA DNA-directed RNA polymerase subunit alpha CJJ81176_1582 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 121613032 Common - Mur ligase family protein CJJ81176_0816 168 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 121612516 Common - dnaK suppressor protein, putative CJJ81176_0160 115 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 121612180 Common modB molybdenum ABC transporter, permease protein CJJ81176_0323 211 COG4149 ModC, ABC-type molybdate transport system, permease component Inorganic ion transport and metabolism 121613363 Common exbD biopolymer transport exbD protein CJJ81176_1620 63 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 121612594 Common lysA diaminopimelate decarboxylase CJJ81176_0336 217 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 121613021 Common - multidrug resistance protein, SMR family CJJ81176_0332 68 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 121613554 Common - integral membrane protein CJJ81176_1529 9 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 121613041 Common ceuD enterochelin ABC transporter, ATP-binding protein CJJ81176_1353 249 COG4604 CeuD, ABC-type enterochelin transport system, ATPase component Inorganic ion transport and metabolism 121612463 Common gapA glyceraldehyde 3-phosphate dehydrogenase A CJJ81176_1402 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 121613518 Common - thiamine-phosphate pyrophosphorylase, putative CJJ81176_1064 62 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 121612205 Common serA D-3-phosphoglycerate dehydrogenase CJJ81176_0900 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 121612972 Common selA selenocysteine synthase CJJ81176_1380 64 COG1921 SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] Amino acid transport and metabolism 121613299 Common rpmF 50S ribosomal protein L32 CJJ81176_0352 7 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 121613526 Common - 7-alpha-hydroxysteroid dehydrogenase CJJ81176_0828 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 121612489 Common - lipoprotein, putative CJJ81176_0419 7 None None None 121612390 Common - MATE efflux family protein, authentic frameshift CJJ81176_0585 69 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 121612419 Common ceuC enterochelin ABC transporter, permease protein CJJ81176_1352 43 COG4605 CeuC, ABC-type enterochelin transport system, permease component Inorganic ion transport and metabolism 121612263 Common - hypothetical protein CJJ81176_0969 23 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 121612450 Common - ABC transporter, permease protein CJJ81176_0794 101 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 121613697 Common ilvD dihydroxy-acid dehydratase CJJ81176_0039 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 121613457 Common - potassium-transporting ATPase, C subunit, putative CJJ81176_0701 93 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 121613064 Common fliM flagellar motor switch protein FliM CJJ81176_0098 105 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 121613240 Common fliI flagellum-specific ATP synthase CJJ81176_0226 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 121613725 Common aroA 3-phosphoshikimate 1-carboxyvinyltransferase CJJ81176_0904 229 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 121612675 Common acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase CJJ81176_0852 221 COG1049 AcnB, Aconitase B Energy production and conversion 121613118 Common - ferredoxin, 4Fe-4S CJJ81176_0378 115 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 121612842 Common - hypothetical protein CJJ81176_1527 104 COG2049 DUR1, Allophanate hydrolase subunit 1 Amino acid transport and metabolism 121613237 Common tpx thiol peroxidase CJJ81176_0800 99 COG2077 Tpx, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 121612907 Common bioB biotin synthase CJJ81176_1677 171 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 121613091 Common algI alginate O-acetyltransferase AlgI CJJ81176_0640 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 121613631 Common - haemagglutination domain protein CJJ81176_0760 7 None None None 121612121 Common aroC chorismate synthase CJJ81176_1625 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 121612493 Common ribB bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein CJJ81176_0600 229 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 121612554 Pathogen - putative periplasmic protein CJJ81176_0993 1 None None None 121613571 Common flgG flagellar basal body rod protein FlgG CJJ81176_0721 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 121612160 Common - sodium/hydrogen exchanger family protein CJJ81176_1676 145 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 121613147 Common era GTP-binding protein Era CJJ81176_0688 218 COG1159 Era, GTPase General function prediction only 121612190 Common - putative MCP-domain signal transduction protein CJJ81176_0273 6 None None None 121612460 Pathogen - hypothetical protein CJJ81176_0276 1 None None None 121612553 Common - phosphate ABC transporter, permease protein PstC, putative CJJ81176_0643 223 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 121612432 Common rpsF 30S ribosomal protein S6 CJJ81176_1088 206 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 121613610 Pathogen - hypothetical protein CJJ81176_1489 1 None None None 121612189 Common lpxA UDP-N-acetylglucosamine acyltransferase CJJ81176_0301 145 COG1043 LpxA, Acyl- acyl carrier protein 121613018 Common - hypothetical protein CJJ81176_1270 48 COG3663 Mug, G:T/U mismatch-specific DNA glycosylase DNA replication, recombination, and repair 121612152 Common - RelA/SpoT family protein CJJ81176_1288 207 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 121612793 Common - hypothetical protein CJJ81176_0230 6 None None None 121613099 Common - multidrug transporter membrane component/ATP-binding component CJJ81176_1575 249 COG4615 PvdE, ABC-type siderophore export system, fused ATPase and permease components Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism 121612708 Common ybbB tRNA 2-selenouridine synthase CJJ81176_0521 65 COG2603 COG2603, Predicted ATPase General function prediction only 121612858 Common - hypothetical protein CJJ81176_0128 11 COG1462 CsgG, Uncharacterized protein involved in formation of curli polymers Cell envelope biogenesis, outer membrane 121612646 Common - hemin ABC transporter, periplasmic hemin-binding protein, putative CJJ81176_1604 119 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 121612591 Common - hypothetical protein CJJ81176_1302 9 COG1427 COG1427, Predicted periplasmic solute-binding protein General function prediction only 121612743 Common gmhA-2 phosphoheptose isomerase CJJ81176_1423 122 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 121613396 Common hslV ATP-dependent protease peptidase subunit CJJ81176_0690 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 121612356 Common - ABC transporter, permease protein CJJ81176_0753 38 COG4132 COG4132, ABC-type uncharacterized transport system, permease component General function prediction only 121612232 Common - conserved hypothetical protein, degenerate CJJ81176_1746 20 COG5472 COG5472, Predicted small integral membrane protein Function unknown 121613659 Common mdh malate dehydrogenase CJJ81176_0557 160 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 121612343 Common acpS 4'-phosphopantetheinyl transferase CJJ81176_1408 92 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 121613307 Common rplE 50S ribosomal protein L5 CJJ81176_1692 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 121613650 Common accC-1 acetyl-CoA carboxylase CJJ81176_1056 232 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 121612559 Common - hydrogenase, (NiFe)/(NiFeSe) small subunit family CJJ81176_1398 77 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 121613222 Common - type I restriction modification DNA specificity domain protein CJJ81176_0777 109 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 121612922 Pathogen - hypothetical protein CJJ81176_0829 1 None None None 121612897 Common hydC quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit CJJ81176_1281 42 COG1969 HyaC, Ni,Fe-hydrogenase I cytochrome b subunit Energy production and conversion 121612395 Common nidH dinucleoside polyphosphate hydrolase CJJ81176_0609 116 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 121613297 Pathogen - hypothetical protein CJJ81176_0440 1 None None None 121612439 Common - DNA-binding response regulator CJJ81176_0379 215 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 121612479 Common - peptide ABC transporter, ATP-binding protein CJJ81176_1565 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 121612504 Common - transferase, hexapeptide repeat family CJJ81176_0254 198 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 121613670 Common - MmgE/PrpD family protein CJJ81176_1394 60 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 121612709 Common nhaA-2 Na+/H+ antiporter NhaA CJJ81176_1646 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 121612785 Common dnaG DNA primase CJJ81176_1629 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 121612963 Pathogen - hypothetical protein CJJ81176_0018 1 None None None 121613348 Common - anaerobic dimethyl sulfoxide reductase chain A CJJ81176_1570 176 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 121612287 Common - serine protease, subtilase family CJJ81176_1371 111 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 121612444 Common - methyl-accepting chemotaxis protein CJJ81176_1548 29 None None None 121613604 Common rpsI 30S ribosomal protein S9 CJJ81176_1472 249 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 121612378 Common dprA DNA processing protein A CJJ81176_0662 209 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 121612633 Common kpsT capsular polysaccharide ABC transporter, ATP-binding protein CJJ81176_1440 248 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 121613459 Common ilvH acetolactate synthase 3 regulatory subunit CJJ81176_0603 190 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 121612109 Common - MOSC domain protein CJJ81176_0630 77 COG2258 COG2258, Uncharacterized protein conserved in bacteria Function unknown 121613666 Common leuD 3-isopropylmalate dehydratase, small subunit CJJ81176_0014 210 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 121612959 Common - hypothetical protein CJJ81176_0980 7 None None None 121613476 Common ctpA carboxyl-terminal protease CJJ81176_0539 182 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 121612886 Common pgi glucose-6-phosphate isomerase CJJ81176_1520 208 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 121612610 Common argC N-acetyl-gamma-glutamyl-phosphate reductase CJJ81176_0249 215 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 121613011 Common - hypothetical protein CJJ81176_1087 19 COG2990 VirK, Uncharacterized protein conserved in bacteria Function unknown 121612614 Common fliF flagellar MS-ring protein CJJ81176_0340 127 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 121612702 Common rplV 50S ribosomal protein L22 CJJ81176_1699 213 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 121612803 Common flgH flagellar basal body L-ring protein CJJ81176_0710 99 COG2063 FlgH, Flagellar basal body L-ring protein Cell motility and secretion 121613512 Common - putative transporter CJJ81176_0213 61 COG1133 SbmA, ABC-type long-chain fatty acid transport system, fused permease and ATPase components Lipid metabolism 121613004 Common - biotin--protein ligase CJJ81176_0134 110 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 121613747 Common - hypothetical protein CJJ81176_0734 7 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 121613617 Common dsbA thiol:disulfide interchange protein DsbA CJJ81176_0880 27 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 121612100 Common - methyl-accepting chemotaxis protein CJJ81176_0046 76 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 121612992 Pathogen - putative ATP CJJ81176_0595 2 None None None 121613452 Common - multidrug resistance efflux transporter, authentic frameshift CJJ81176_1273 88 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 121613318 Common - hypothetical protein CJJ81176_0159 8 None None None 121613557 Common - transthyretin-like protein CJJ81176_0738 63 COG2351 COG2351, Transthyretin-like protein General function prediction only 121613055 Common - lipoprotein, putative CJJ81176_0399 6 None None None 121612943 Common - hypothetical protein CJJ81176_0621 132 COG2860 COG2860, Predicted membrane protein Function unknown 121613737 Common - sodium/dicarboxylate symporter CJJ81176_1115 144 COG3633 SstT, Na+/serine symporter Amino acid transport and metabolism 121612408 Common - anion transporter CJJ81176_0086 4 None None None 121613323 Common hypE hydrogenase expression/formation protein HypE CJJ81176_0655 113 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 121613126 Common - hypothetical protein CJJ81176_0173 157 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 121613383 Common - DNA-binding response regulator CJJ81176_1236 217 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 121613178 Common - hypothetical protein CJJ81176_0110 67 COG1556 COG1556, Uncharacterized conserved protein Function unknown 121613435 Common - macrolide-specific efflux protein macB CJJ81176_0636 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 121613081 Common - thiol:disulfide interchange protein DsbA, putative CJJ81176_0883 19 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 121613157 Pathogen - lipoprotein, putative CJJ81176_1383 1 None None None 121612869 Common - peptidoglycan-associated lipoprotein Omp18 CJJ81176_0148 147 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 121612632 Common - polyphosphate kinase 2 CJJ81176_0633 125 COG2326 COG2326, Uncharacterized conserved protein Function unknown 121613044 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase CJJ81176_0090 215 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 121613143 Pathogen - hypothetical protein CJJ81176_1537 1 None None None 121613314 Common purF amidophosphoribosyltransferase CJJ81176_0227 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 121612225 Common - hypothetical protein CJJ81176_0808 4 None None None 121612647 Common - hypothetical protein CJJ81176_0275 42 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 121612402 Common - oxidoreductase, 2-nitropropane dioxygenase family CJJ81176_1286 133 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 121613400 Common - amino acid-binding protein CJJ81176_0836 178 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 121613665 Common thiS thiamine biosynthesis protein ThiS CJJ81176_1068 17 COG2104 ThiS, Sulfur transfer protein involved in thiamine biosynthesis Coenzyme metabolism 121612656 Common - flagellar motor protein MotA CJJ81176_0359 114 COG1291 MotA, Flagellar motor component Cell motility and secretion 121613008 Common - hypothetical protein CJJ81176_0042 12 COG4940 ComGF, Competence protein ComGF Intracellular trafficking and secretion 121612371 Common sucC succinyl-CoA synthase, beta subunit CJJ81176_0558 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 121612852 Common - hypothetical protein CJJ81176_0065 6 COG2143 COG2143, Thioredoxin-related protein Posttranslational modification, protein turnover, chaperones 121612929 Common tatC Sec-independent protein translocase TatC CJJ81176_0606 205 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 121612135 Common prfB peptide chain release factor 2 CJJ81176_1448 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 121612241 Common flgE-1 flagellar hook protein CJJ81176_0081 127 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 121612526 Common - TenA/Thi-4 family protein CJJ81176_0466 74 COG0819 TenA, Putative transcription activator Transcription 121612683 Pathogen - hypothetical protein CJJ81176_0242 1 None None None 121613730 Pathogen - acetyltransferase, GNAT family CJJ81176_1323 1 COG0456 RimI, Acetyltransferases General function prediction only 121612293 Common - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative CJJ81176_0544 145 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 121612369 Common - HIT family protein CJJ81176_0442 47 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 121612502 Common - McrBC restriction endonuclease system, McrB subunit, putative CJJ81176_0174 45 COG1401 McrB, GTPase subunit of restriction endonuclease Defense mechanisms 121613597 Common pbpC penicillin-binding protein 2 CJJ81176_0680 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 121612530 Common - cell division protein FtsH, putative CJJ81176_1023 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 121613502 Common ppiB peptidyl-prolyl cis-trans isomerase B CJJ81176_1186 186 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 121612339 Common recJ single-stranded-DNA-specific exonuclease RecJ CJJ81176_0055 192 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 121612956 Common - hypothetical protein CJJ81176_0184 58 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 121612412 Pathogen - hypothetical protein CJJ81176_0620 1 None None None 121612576 Common ksgA dimethyladenosine transferase CJJ81176_0005 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 121613330 Common truA tRNA pseudouridine synthase A CJJ81176_0844 224 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 121613087 Common purD phosphoribosylamine--glycine ligase CJJ81176_1266 231 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 121612272 Common ctsF general secretory pathway protein F CJJ81176_1463 148 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 121612486 Common - hypothetical protein CJJ81176_1365 124 COG0628 PerM, Predicted permease General function prediction only 121612845 Common lepB signal peptidase I CJJ81176_0872 174 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 121613255 Common - hypothetical protein CJJ81176_1624 29 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 121613586 Pathogen - hypothetical protein CJJ81176_0061 1 None None None 121613256 Common flgB flagellar basal body rod protein FlgB CJJ81176_0553 50 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 121613504 Common pheS phenylalanyl-tRNA synthetase subunit alpha CJJ81176_0906 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 121612330 Common - hypothetical protein CJJ81176_1315 8 COG2746 COG2746, Aminoglycoside N3'-acetyltransferase Defense mechanisms 121613182 Common - hypothetical protein CJJ81176_0809 4 None None None 121612738 Common kpsC capsule polysaccharide export protein KpsC CJJ81176_1413 30 COG3563 KpsC, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 121612731 Common rpsK 30S ribosomal protein S11 CJJ81176_1580 247 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 121612984 Common nuoL NADH dehydrogenase subunit L CJJ81176_1553 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 121612717 Common - hypothetical protein CJJ81176_1230 141 COG1496 COG1496, Uncharacterized conserved protein Function unknown 121613542 Common gltD glutamate synthase subunit beta CJJ81176_0035 204 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 121613677 Common yihY YihY family protein CJJ81176_1225 59 COG1295 Rbn, Predicted membrane protein Function unknown 121613286 Pathogen - hypothetical protein CJJ81176_0909 1 None None None 121612291 Common recG ATP-dependent DNA helicase RecG CJJ81176_0489 213 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 121612780 Pathogen - hypothetical protein CJJ81176_0901 1 None None None 121613547 Common - recombination factor protein RarA CJJ81176_0229 244 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 121613430 Common - hypothetical protein CJJ81176_0299 66 COG1636 COG1636, Uncharacterized protein conserved in bacteria Function unknown 121613702 Common ppa inorganic pyrophosphatase CJJ81176_0666 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 121612305 Common - tungstate ABC transporter, periplasmic tungstate-binding protein, putative CJJ81176_1525 61 COG2998 TupB, ABC-type tungstate transport system, permease component Coenzyme metabolism 121613560 Common dgkA diacylglycerol kinase CJJ81176_0284 81 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 121612253 Common hydD hydrogenase maturation protease HydD CJJ81176_1280 54 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 121613165 Common fabH 3-oxoacyl-(acyl carrier protein) synthase III CJJ81176_0350 225 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 121612381 Common - hypothetical protein CJJ81176_0582 19 COG1289 COG1289, Predicted membrane protein Function unknown 121612521 Common - hypothetical protein CJJ81176_0335 21 COG0795 COG0795, Predicted permeases General function prediction only 121612265 Common leuA 2-isopropylmalate synthase CJJ81176_0017 215 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 121612310 Common - putative transmembrane transport protein CJJ81176_1061 60 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 121612579 Common gmhA-1 phosphoheptose isomerase CJJ81176_1166 126 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 121613279 Common waaA 3-deoxy-D-manno-octulosonic-acid transferase CJJ81176_0730 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 121612417 Common - hypothetical protein CJJ81176_0632 126 COG2326 COG2326, Uncharacterized conserved protein Function unknown 121612665 Common acpP acyl carrier protein CJJ81176_0468 209 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 121612220 Common fdhC formate dehydrogenase, cytochrome b subunit CJJ81176_1501 59 COG2864 FdnI, Cytochrome b subunit of formate dehydrogenase Energy production and conversion 121613532 Common pebA bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein CJJ81176_0928 160 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 121613416 Common sdaA L-serine ammonia-lyase CJJ81176_1615 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 121612362 Common ribD riboflavin biosynthesis protein RibD CJJ81176_1613 199 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 121613061 Common - radical SAM domain protein CJJ81176_1259 52 COG0731 COG0731, Fe-S oxidoreductases Energy production and conversion 121612285 Common - hypothetical protein CJJ81176_0974 7 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 121613311 Common - hypothetical protein CJJ81176_0554 184 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 121612400 Common - hypothetical protein CJJ81176_0487 81 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 121613615 Pathogen - hypothetical protein CJJ81176_1647 1 None None None 121612177 Common - hypothetical protein CJJ81176_0650 7 None None None 121612753 Common petB ubiquinol--cytochrome c reductase, cytochrome b subunit CJJ81176_1200 149 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 121612710 Common pglE general glycosylation pathway protein CJJ81176_1139 190 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 121612589 Common ung uracil-DNA glycosylase CJJ81176_0121 129 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 121612697 Common - acetyltransferase, GNAT family CJJ81176_1082 17 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 121612864 Common - conserved hypothetical protein, authentic frameshift CJJ81176_1050 19 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 121612147 Common cadF fibronectin-binding protein CJJ81176_1471 163 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 121612692 Common rbr rubrerythrin CJJ81176_0038 79 COG1592 COG1592, Rubrerythrin Energy production and conversion 121612279 Pathogen - pathogenicity protein, putative, truncation CJJ81176_0248 2 None None None 121613514 Common - multidrug resistance protein, SMR family CJJ81176_1188 47 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 121612602 Common flmA polysaccharide biosynthesis protein CJJ81176_1310 204 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 121613715 Pathogen - hypothetical protein CJJ81176_0268 1 None None None 121612514 Common fmt methionyl-tRNA formyltransferase CJJ81176_0133 215 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 121613569 Common - hypothetical protein CJJ81176_0865 18 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 121612562 Common livM high affinity branched-chain amino acid ABC transporter, permease protein CJJ81176_1035 150 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 121613406 Common napB periplasmic nitrate reductase, small subunit CJJ81176_0804 41 COG3043 NapB, Nitrate reductase cytochrome c-type subunit Energy production and conversion 121613023 Common - putative integral membrane protein CJJ81176_1075 45 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 121613305 Common - lipoprotein, putative CJJ81176_1476 5 None None None 121612970 Common - hypothetical protein CJJ81176_1518 6 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 121612745 Common ftn nonheme iron-containing ferritin CJJ81176_0641 85 COG1528 Ftn, Ferritin-like protein Inorganic ion transport and metabolism 121612898 Pathogen - hypothetical protein CJJ81176_0456 1 None None None 121613699 Common - thioredoxin family protein CJJ81176_1656 1 None None None 121613447 Common - NAD-dependent deacetylase CJJ81176_1071 150 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 121612543 Common - type I site-specific deoxyribonuclease chain R CJJ81176_0780 133 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 121613636 Common trxB thioredoxin-disulfide reductase CJJ81176_0182 246 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 121612477 Common - exsB protein CJJ81176_0043 178 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 121613111 Common - hypothetical protein CJJ81176_0946 5 None None None 121612452 Pathogen - hypothetical protein CJJ81176_0687 1 None None None 121613190 Common dsbB putative disulfide oxidoreductase CJJ81176_0881 22 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 121612830 Common hydB quinone-reactive Ni/Fe-hydrogenase, large subunit CJJ81176_1282 97 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 121613154 Common - conserved hypothetical protein TIGR00486 CJJ81176_0728 90 COG0327 COG0327, Uncharacterized conserved protein Function unknown 121613108 Common rpsR 30S ribosomal protein S18 CJJ81176_1090 210 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 121613211 Common - HAD-superfamily hydrolase, subfamily IA, variant 1 family protein CJJ81176_1247 144 COG0546 Gph, Predicted phosphatases General function prediction only 121612207 Common - hypothetical protein CJJ81176_1265 3 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 121613691 Common dnaB replicative DNA helicase CJJ81176_0587 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 121613290 Common secD preprotein translocase subunit SecD CJJ81176_1111 219 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 121613266 Common atpD F0F1 ATP synthase subunit beta CJJ81176_0142 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 121612248 Common - capsular biosynthesis nucleotidyltransferase, putative CJJ81176_1422 230 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 121612317 Common glnA glutamine synthetase, type I CJJ81176_0722 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 121613498 Common - hypothetical protein CJJ81176_0723 5 None None None 121612116 Common - pyridine nucleotide-disulphide oxidoreductase family protein CJJ81176_0584 208 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 121612111 Common - Holliday junction resolvase-like protein CJJ81176_0663 22 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 121613105 Pathogen - hypothetical protein CJJ81176_0705 1 None None None 121612609 Common - acetyltransferase CJJ81176_1162 151 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 121613244 Common - hypothetical protein CJJ81176_0953 25 None None None 121613573 Common - xanthine/uracil permease family protein CJJ81176_1372 140 COG2252 COG2252, Permeases General function prediction only 121612118 Common - di-/tripeptide transporter CJJ81176_0682 73 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 121613516 Common - potassium uptake protein TrkA, putative CJJ81176_1301 119 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 121613709 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein CJJ81176_1264 239 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 121613482 Common - hypothetical protein CJJ81176_1506 7 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 121613649 Common - thioesterase family protein CJJ81176_0922 138 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 121613030 Common - hypothetical protein CJJ81176_1666 4 None None None 121613441 Common leuS leucyl-tRNA synthetase CJJ81176_1109 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121612518 Common - hypothetical protein CJJ81176_0715 6 None None None 121613037 Common oorC 2-oxoglutarate-acceptor oxidoreductase subunit OorC CJJ81176_0563 53 COG1014 PorG, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit Energy production and conversion 121613155 Pathogen - hypothetical protein CJJ81176_1648 1 None None None 121612741 Pathogen - hypothetical protein CJJ81176_0374 1 None None None 121612768 Common cdtB cytolethal distending toxin, subunit B CJJ81176_0115 7 None None None 121613492 Common hypC hydrogenase assembly chaperone HypC/HupF CJJ81176_0653 86 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 121612176 Common - organic solvent tolerance protein, putative CJJ81176_1268 90 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 121612169 Common - lipoprotein, NLPA family CJJ81176_0792 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 121612154 Common rplY 50S ribosomal protein L25/general stress protein Ctc CJJ81176_0333 161 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 121612476 Common - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family CJJ81176_0492 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 121613732 Common aspA aspartate ammonia-lyase CJJ81176_0122 238 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 121612162 Common - 6-pyruvoyl tetrahydrobiopterin synthase, homolog CJJ81176_0195 37 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 121613663 Common - peptidase, M23/M37 family CJJ81176_1228 192 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 121613100 Common trpA tryptophan synthase subunit alpha CJJ81176_0373 217 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 121612725 Common - sensor histidine kinase CJJ81176_0814 136 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 121612299 Pathogen - hypothetical protein CJJ81176_0444 1 None None None 121612761 Common - hypothetical protein CJJ81176_0647 2 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 121612430 Common tuf elongation factor Tu CJJ81176_0499 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 121612158 Common - hypothetical protein CJJ81176_1017 116 COG2855 COG2855, Predicted membrane protein Function unknown 121613107 Common pglJ general glycosylation pathway protein CJJ81176_1144 155 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 121613624 Common recR recombination protein RecR CJJ81176_1279 203 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 121613404 Common hisB imidazole glycerol-phosphate dehydratase/histidinol phosphatase CJJ81176_1586 216 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 121612453 Common - hypothetical protein CJJ81176_0578 28 COG3817 COG3817, Predicted membrane protein Function unknown 121613352 Common - phosphatase, Ppx/GppA family CJJ81176_0377 182 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 121613708 Common yliG MiaB-like tRNA modifying enzyme YliG, TIGR01125 CJJ81176_1447 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 121612524 Common hisI phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase CJJ81176_1591 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 121613521 Common - disulfide bond formation protein, DsbB family CJJ81176_0044 8 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 121613268 Common - class I glutamine amidotransferase, putative CJJ81176_1416 48 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 121612540 Common mviN integral membrane protein MviN CJJ81176_0822 170 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 121613116 Common ffh signal recognition particle protein CJJ81176_0732 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 121612831 Common pheA chorismate mutase/prephenate dehydratase CJJ81176_0338 214 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 121613388 Common - major facilitator superfamily protein CJJ81176_0277 132 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 121613261 Common - hypothetical protein CJJ81176_0714 3 None None None 121612425 Common dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase CJJ81176_1345 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 121613191 Common - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CJJ81176_0789 151 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 121612239 Common engA GTP-binding protein EngA CJJ81176_0409 226 COG1160 COG1160, Predicted GTPases General function prediction only 121613576 Common - hypothetical protein CJJ81176_0127 6 None None None 121612538 Common - ABC transporter, ATP-binding protein CJJ81176_0795 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 121613214 Common flgE flagellar hook protein FlgE CJJ81176_0025 129 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 121612720 Common fusA elongation factor G CJJ81176_0513 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 121612583 Common rnhB ribonuclease HII CJJ81176_0036 206 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 121613460 Common - amino acid adenylation domain protein CJJ81176_1322 196 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 121612682 Common typA GTP-binding protein TypA CJJ81176_0077 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 121613274 Common cheA chemotaxis protein CheA CJJ81176_0310 224 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 121612696 Common purC phosphoribosylaminoimidazole-succinocarboxamide synthase CJJ81176_0540 191 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 121613507 Common - LPS glycosyltransferase subfamily CJJ81176_1165 15 COG3306 COG3306, Glycosyltransferase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 121612750 Common bioD dethiobiotin synthetase CJJ81176_0330 101 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 121612627 Common - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family CJJ81176_0493 155 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 121613462 Common - arginyl-tRNA-protein transferase CJJ81176_1054 86 COG2935 COG2935, Putative arginyl-tRNA:protein arginylyltransferase Posttranslational modification, protein turnover, chaperones 121613068 Common putP sodium/proline permease CJJ81176_1494 184 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 121612322 Common - hypothetical protein CJJ81176_1363 2 None None None 121612775 Common - lipoprotein, VacJ family CJJ81176_1374 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 121613467 Common - cell division protein FtsK, putative CJJ81176_0893 206 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 121612691 Common - hypothetical protein CJJ81176_0481 3 None None None 121613369 Pathogen - putative periplasmic protein CJJ81176_0990 1 None None None 121612234 Common gatC aspartyl/glutamyl-tRNA amidotransferase subunit C CJJ81176_0421 30 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 121613337 Common - peptide ABC transporter, ATP-binding protein CJJ81176_1566 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 121612513 Common - galactosyltransferase CJJ81176_1432 157 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 121612385 Pathogen - hypothetical protein CJJ81176_0747 1 None None None 121613174 Common hypF [NiFe] hydrogenase maturation protein HypF CJJ81176_0651 110 COG0068 HypF, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 121612667 Common - aspartate kinase CJJ81176_0610 237 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 121612335 Common trpE anthranilate synthase component I CJJ81176_0369 222 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 121612813 Common hemH ferrochelatase CJJ81176_0531 163 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 121613413 Common thiG thiazole synthase CJJ81176_1066 166 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 121612290 Pathogen - hypothetical protein CJJ81176_0762 1 None None None 121612715 Common hisG ATP phosphoribosyltransferase CJJ81176_1584 213 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 121613243 Common - mechanosensitive ion channel family protein CJJ81176_0263 173 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 121612757 Pathogen - hypothetical protein CJJ81176_1673 1 None None None 121613304 Common argF ornithine carbamoyltransferase CJJ81176_1012 240 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 121612546 Common - lipoprotein, putative CJJ81176_0970 24 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 121613065 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase CJJ81176_0201 210 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 121613593 Common ctsD general secretory pathway protein D CJJ81176_1467 144 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 121613253 Common - DedA family protein CJJ81176_1183 135 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 121612141 Common glyS glycyl-tRNA synthetase subunit beta CJJ81176_1248 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 121613078 Common - transcriptional regulator, LysR family CJJ81176_1018 162 COG0583 LysR, Transcriptional regulator Transcription 121612472 Common ccoN cytochrome c oxidase, cbb3-type, subunit I CJJ81176_1482 154 COG3278 CcoN, Cbb3-type cytochrome oxidase, subunit 1 Posttranslational modification, protein turnover, chaperones 121613539 Common - response regulator/GGDEF domain protein CJJ81176_0671 188 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 121612274 Common - hypothetical protein CJJ81176_1462 110 COG0730 COG0730, Predicted permeases General function prediction only 121612733 Common flgC flagellar basal body rod protein FlgC CJJ81176_0552 124 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 121612904 Common glcD glycolate oxidase, subunit GlcD CJJ81176_1226 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 121612403 Common fliR flagellar biosynthesis protein FliR CJJ81176_1194 111 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 121613545 Common hemB delta-aminolevulinic acid dehydratase CJJ81176_1013 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 121613739 Common bioF 8-amino-7-oxononanoate synthase CJJ81176_0328 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 121613719 Common - lipoprotein, putative CJJ81176_1640 3 COG3218 COG3218, ABC-type uncharacterized transport system, auxiliary component General function prediction only 121613365 Common thiJ 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme CJJ81176_0908 90 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 121612364 Common rplM 50S ribosomal protein L13 CJJ81176_1473 230 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 121613432 Pathogen - hypothetical protein CJJ81176_0024 1 None None None 121612976 Common lpxK tetraacyldisaccharide 4'-kinase CJJ81176_0832 74 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 121612989 Common - membrane protein, putative, degenerate CJJ81176_0975 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 121613184 Common purL phosphoribosylformylglycinamidine synthase II CJJ81176_0978 233 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 121612825 Common - hypothetical protein CJJ81176_1232 7 None None None 121612827 Common gcp O-sialoglycoprotein endopeptidase CJJ81176_1343 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 121613225 Common - drug resistance transporter, Bcr/CflA family CJJ81176_0073 197 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 121612483 Common radA DNA repair protein RadA CJJ81176_1220 206 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 121612437 Common sdhB succinate dehydrogenase, iron-sulfur protein subunit CJJ81176_0464 196 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 121612440 Common - HsdS CJJ81176_1536 82 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 121613204 Common - sensor histidine kinase CJJ81176_1240 182 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 121612374 Common - chlorohydrolase CJJ81176_0105 79 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 121612853 Common - DedA family protein CJJ81176_0935 127 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 121612599 Common - transporter, putative CJJ81176_0214 218 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 121612131 Common - hypothetical protein CJJ81176_0451 5 None None None 121613015 Common - hypothetical protein CJJ81176_0281 3 None None None 121612805 Common tal transaldolase CJJ81176_0307 91 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 121612892 Common - hypothetical protein CJJ81176_0367 10 COG0730 COG0730, Predicted permeases General function prediction only 121612214 Pathogen - putative periplasmic protein CJJ81176_0525 1 None None None 121613339 Common - sensor histidine kinase CJJ81176_1235 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 121612590 Common hisH imidazole glycerol phosphate synthase subunit HisH CJJ81176_1587 214 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 121613377 Common - NifU family protein CJJ81176_0264 114 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 121612645 Common - hypothetical protein CJJ81176_0782 4 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 121612799 Common panC pantoate--beta-alanine ligase CJJ81176_0320 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 121612405 Pathogen - hypothetical protein CJJ81176_0157 1 None None None 121612153 Common - DNA polymerase III subunit delta CJJ81176_0658 8 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 121613540 Common - sigma-54 dependent DNA-binding response regulator CJJ81176_1043 169 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 121613146 Common murG N-acetylglucosaminyl transferase CJJ81176_1058 206 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 121612964 Common - site-specific DNA methyltransferase, putative CJJ81176_1454 52 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 121612606 Common - S4 domain protein CJJ81176_0693 36 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 121613511 Common - transporter, putative CJJ81176_0486 33 None None None 121612680 Common gltX-1 glutamyl-tRNA synthetase CJJ81176_0861 243 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 121613138 Common - sodium transporter, putative CJJ81176_0941 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 121613367 Common - formate dehydrogenase CJJ81176_1504 175 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 121612197 Common - hypothetical protein CJJ81176_0923 11 COG2879 COG2879, Uncharacterized small protein Function unknown 121612350 Pathogen - hypothetical protein CJJ81176_1229 1 None None None 121612906 Pathogen - hypothetical protein CJJ81176_0593 1 None None None 121612410 Common - tungsten ABC transporter, ATP-binding protein, putative CJJ81176_1523 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 121613002 Common - hypothetical protein CJJ81176_0490 41 COG2346 COG2346, Truncated hemoglobins General function prediction only 121613629 Common leuB 3-isopropylmalate dehydrogenase CJJ81176_0016 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 121612936 Common - hypothetical protein CJJ81176_0082 4 None None None 121612106 Common - hypothetical protein CJJ81176_1681 9 None None None 121613045 Common livH high affinity branched-chain amino acid ABC transporter, permease protein CJJ81176_1036 150 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 121612800 Pathogen - putative periplasmic protein CJJ81176_0527 1 None None None 121613453 Common - Hit family protein CJJ81176_0520 99 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 121612394 Pathogen - hypothetical protein CJJ81176_0945 1 None None None 121613168 Common - hmcD domain protein CJJ81176_0094 4 None None None 121612653 Common mutS recombination and DNA strand exchange inhibitor protein CJJ81176_1072 77 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 121612889 Common - hypothetical protein CJJ81176_0381 169 COG0344 COG0344, Predicted membrane protein Function unknown 121613346 Common pglA general glycosylation pathway protein CJJ81176_1142 163 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 121612570 Common - cytochrome c biogenesis protein, CcmF/CycK/CcsA family CJJ81176_1032 106 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 121613734 Common - lipooligosaccharide biosynthesis glycosyltransferase, putative CJJ81176_1152 144 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 121612337 Common - plasmid stabilization system protein, RelE/ParE family CJJ81176_1356 3 COG3668 ParE, Plasmid stabilization system protein General function prediction only 121613059 Common mtnA 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase CJJ81176_0152 92 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 121613745 Common - F0F1 ATP synthase subunit B CJJ81176_0138 7 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 121613679 Common - hypothetical protein CJJ81176_0365 91 COG1238 COG1238, Predicted membrane protein Function unknown 121612946 Common atpA F0F1 ATP synthase subunit alpha CJJ81176_0140 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 121612383 Common - flagellar protein, putative CJJ81176_1329 25 COG3980 spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase Cell envelope biogenesis, outer membrane 121613019 Common - DegT/DnrJ/EryC1/StrS aminotransferase family CJJ81176_0533 201 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 121613558 Pathogen - hypothetical protein CJJ81176_0575 1 None None None 121613475 Common - predicted inner membrane protein CJJ81176_1492 65 COG2391 COG2391, Predicted transporter component General function prediction only 121612568 Common - ABC transporter, ATP-binding protein CJJ81176_0755 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 121612255 Common clpP ATP-dependent Clp protease proteolytic subunit CJJ81176_0223 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 121613384 Common dctA C4-dicarboxylate transport protein CJJ81176_1207 157 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 121613054 Common - hypothetical protein CJJ81176_0547 15 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 121612986 Pathogen - putative periplasmic protein CJJ81176_0991 1 None None None 121613152 Pathogen - feoA family protein CJJ81176_1395 1 None None None 121612971 Pathogen - hypothetical protein CJJ81176_0807 1 None None None 121612783 Common waaD ADP-L-glycero-D-mannoheptose-6-epimerase CJJ81176_1168 232 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 121612458 Pathogen - hypothetical protein CJJ81176_0093 1 None None None 121613176 Common rplL 50S ribosomal protein L7/L12 CJJ81176_0508 207 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 121613294 Common - hypothetical protein CJJ81176_1560 6 None None None 121613559 Pathogen - lipoprotein, putative CJJ81176_0430 1 None None None 121612969 Common murI glutamate racemase CJJ81176_1643 189 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 121613728 Common - Ser/Thr protein phosphatase family protein CJJ81176_0215 30 COG4639 COG4639, Predicted kinase General function prediction only 121613523 Common rplT 50S ribosomal protein L20 CJJ81176_0270 213 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 121612921 Common - phosphate transporter family protein CJJ81176_1209 173 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 121612357 Common oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD CJJ81176_0560 56 COG1146 COG1146, Ferredoxin Energy production and conversion 121613277 Common - methyl-accepting chemotaxis protein CJJ81176_0289 114 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 121612792 Common - hypothetical protein CJJ81176_0679 1 None None None 121613689 Pathogen - hypothetical protein CJJ81176_0615 1 None None None 121612940 Common ileS isoleucyl-tRNA synthetase CJJ81176_1080 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121613391 Common panD aspartate alpha-decarboxylase CJJ81176_0319 130 COG0853 PanD, Aspartate 1-decarboxylase Coenzyme metabolism 121613322 Common racR DNA-binding response regulator CJJ81176_1277 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 121612651 Common ruvC Holliday junction resolvase CJJ81176_0026 193 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 121612634 Common gatA aspartyl/glutamyl-tRNA amidotransferase subunit A CJJ81176_1079 218 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 121612219 Common hemN coproporphyrinogen III oxidase CJJ81176_1010 204 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 121612995 Common - cysteine desulfurase, putative CJJ81176_0265 240 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 121613308 Common - hypothetical protein CJJ81176_1528 115 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 121612888 Common napH quinol dehydrogenase membrane component CJJ81176_0803 59 COG0348 NapH, Polyferredoxin Energy production and conversion 121613692 Common - flavohemoprotein, truncation CJJ81176_1574 69 COG1017 Hmp, Hemoglobin-like flavoprotein Energy production and conversion 121612342 Common - putative sugar-1-phosphate nucleotidyltransferase CJJ81176_1415 130 COG1213 COG1213, Predicted sugar nucleotidyltransferases Cell envelope biogenesis, outer membrane 121612174 Common - hypothetical protein CJJ81176_0751 27 COG4222 COG4222, Uncharacterized protein conserved in bacteria Function unknown 121613528 Common livF high affinity branched-chain amino acid ABC transporter, ATP-binding protein CJJ81176_1033 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 121612185 Common nusA transcription elongation factor NusA CJJ81176_0485 216 COG0195 NusA, Transcription elongation factor Transcription 121613654 Common clpA ATP-dependent Clp protease, ATP-binding subunit ClpA CJJ81176_1126 226 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 121612882 Common - F0F1 ATP synthase subunit B' CJJ81176_0137 7 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 121612928 Common - hypothetical protein CJJ81176_0516 88 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 121612703 Common ftsH cell division protein FtsH CJJ81176_1134 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 121612500 Common - ankyrin repeat protein CJJ81176_1388 76 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 121613398 Common - TonB system transport protein ExbD, putative CJJ81176_0145 137 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 121613426 Common - phosphatidylserine decarboxylase-related protein CJJ81176_1133 35 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 121613484 Common - hypothetical protein CJJ81176_0376 4 None None None 121612876 Common - cell division protein, FtsW/RodA/SpoVE family CJJ81176_1057 205 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 121612202 Common - twin-arginine translocation protein, TatA/E family CJJ81176_1191 6 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 121612910 Pathogen - hypothetical protein CJJ81176_1007 1 None None None 121613613 Common xth exodeoxyribonuclease III CJJ81176_0282 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 121612435 Common - hypothetical protein CJJ81176_1456 6 None None None 121612126 Common ctsX transformation system protein CJJ81176_1465 5 None None None 121612242 Common rnhA ribonuclease H CJJ81176_1627 174 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 121613622 Common tyrA prephenate dehydrogenase CJJ81176_0165 156 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 121613121 Pathogen - formyl transferase domain protein CJJ81176_1325 2 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 121613096 Common - conserved hypothetical protein, authentic point mutation CJJ81176_0726 4 None None None 121612236 Common cmeA RND efflux system, membrane fusion protein CmeA CJJ81176_0390 169 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 121613740 Common - phosphate ABC transporter, periplasmic phosphate-binding protein, putative CJJ81176_0642 141 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 121612556 Common ccpA-1 cytochrome c551 peroxidase CJJ81176_0047 93 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 121613644 Common purS phosphoribosylformylglycinamidine synthase, purS protein CJJ81176_0541 115 COG1828 PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component Nucleotide transport and metabolism 121613590 Common - YGGT family protein CJJ81176_0860 28 COG0762 COG0762, Predicted integral membrane protein Function unknown 121613633 Common - truncated KdpD protein CJJ81176_0702 94 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 121612492 Common dnaN DNA polymerase III subunit beta CJJ81176_0028 210 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 121612288 Common smpB SsrA-binding protein CJJ81176_1123 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 121612532 Common - hypothetical protein CJJ81176_0626 16 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 121612509 Common nlpC lipoprotein NlpC CJJ81176_1644 142 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 121613230 Common ruvA Holliday junction DNA helicase RuvA CJJ81176_0820 208 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 121613599 Common hisC histidinol-phosphate aminotransferase CJJ81176_0339 224 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 121612918 Common proB gamma-glutamyl kinase CJJ81176_0132 195 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 121613713 Common mraY phospho-N-acetylmuramoyl-pentapeptide-transferase CJJ81176_0459 223 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 121612499 Common - peptidase, M48 family CJJ81176_0746 143 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 121612204 Common - peptidase, M23/M37 family CJJ81176_1291 59 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 121613694 Common clpX ATP-dependent protease ATP-binding subunit CJJ81176_0302 226 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 121612596 Common - methyl-accepting chemotaxis protein CJJ81176_1206 87 COG2202 AtoS, FOG: PAS/PAC domain Signal transduction mechanisms 121612833 Common - transcriptional regulator, Fur family CJJ81176_0344 186 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 121612511 Common - ATP-dependent DNA helicase, UvrD/REP family CJJ81176_1119 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 121612113 Common - major antigenic peptide PEB2 CJJ81176_0799 14 COG4588 AcfC, Accessory colonization factor AcfC, contains ABC-type periplasmic domain General function prediction only 121613102 Common - MATE efflux family protein CJJ81176_0648 121 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 121613063 Common xseA exodeoxyribonuclease VII large subunit CJJ81176_0347 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 121613216 Common dapA dihydrodipicolinate synthase CJJ81176_0827 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 121612621 Common ansA L-asparaginase CJJ81176_0056 141 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 121613470 Common - toluene tolerance protein, putative CJJ81176_1375 60 COG2854 Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component Secondary metabolites biosynthesis, transport, and catabolism 121612465 Common - conserved hypothetical protein, degenerate CJJ81176_1744 47 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 121613379 Common - hypothetical protein CJJ81176_1526 100 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 121613578 Common obgE GTPase ObgE CJJ81176_0131 249 COG0536 Obg, Predicted GTPase General function prediction only 121613439 Common trmA tRNA (uracil-5-)-methyltransferase CJJ81176_0848 152 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 121613489 Common - acetyltransferase, GNAT family CJJ81176_0985 62 COG0456 RimI, Acetyltransferases General function prediction only 121612209 Common - phosphatase, YrbI family CJJ81176_0675 101 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 121613193 Common - hypothetical protein CJJ81176_1180 16 COG3610 COG3610, Uncharacterized conserved protein Function unknown 121612974 Common rpmC 50S ribosomal protein L29 CJJ81176_1696 14 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 121612399 Common - peptidyl-arginine deiminase family protein CJJ81176_0973 88 COG2957 COG2957, Peptidylarginine deiminase and related enzymes Amino acid transport and metabolism 121613488 Common kpsD capsular polysaccharide ABC transporter, periplasmic polysaccharide-binding protein CJJ81176_1438 59 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 121613281 Common rplW 50S ribosomal protein L23 CJJ81176_1702 106 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 121613494 Common - bacterioferritin, putative CJJ81176_1519 111 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 121613371 Common - hypothetical protein CJJ81176_1370 82 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 121612297 Common - hypothetical protein CJJ81176_1386 11 COG4378 COG4378, Uncharacterized protein conserved in bacteria Function unknown 121613248 Common secF preprotein translocase subunit SecF CJJ81176_1110 220 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 121612763 Common aroK shikimate kinase CJJ81176_0410 179 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 121613647 Pathogen - hypothetical protein CJJ81176_1008 1 None None None 121612522 Common folE GTP cyclohydrolase I CJJ81176_0225 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 121613035 Common neuA CMP-N-acetylneuraminic acid synthetase CJJ81176_1328 87 COG1083 NeuA, CMP-N-acetylneuraminic acid synthetase Cell envelope biogenesis, outer membrane 121613039 Common - motility accessory factor CJJ81176_1335 20 COG2604 COG2604, Uncharacterized protein conserved in bacteria Function unknown 121612865 Common fdhA formate dehydrogenase, alpha subunit, selenocysteine-containing CJJ81176_1503 181 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 121613139 Common - hypothetical protein CJJ81176_0954 62 COG0679 COG0679, Predicted permeases General function prediction only 121613443 Pathogen - hypothetical protein CJJ81176_0199 1 None None None 121613109 Common secE preprotein translocase subunit SecE CJJ81176_0502 8 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 121612474 Common - hypothetical protein CJJ81176_0219 193 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 121613186 Common - lipoprotein, putative CJJ81176_0518 11 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 121612896 Common - hypothetical protein CJJ81176_0107 7 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 121613721 Common - hypothetical protein CJJ81176_1453 4 None None None 121612997 Common - hypothetical protein CJJ81176_1608 4 None None None 121612423 Common - beta-1,4-N-acetylgalactosaminyltransferase CJJ81176_1154 3 None None None 121612124 Common - oxidoreductase, Gfo/Idh/MocA family CJJ81176_0532 101 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 121612849 Pathogen ctsR transformation system protein CJJ81176_1468 1 None None None 121612468 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase CJJ81176_1632 208 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 121613582 Common - ABC transporter, ATP-binding protein CJJ81176_0446 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 121612860 Common pyrG CTP synthetase CJJ81176_0054 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 121612672 Common - hypothetical protein CJJ81176_1125 120 COG2127 COG2127, Uncharacterized conserved protein Function unknown 121612679 Common dapE succinyl-diaminopimelate desuccinylase CJJ81176_1069 206 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 121612821 Common waaM lipid A biosynthesis lauroyl acyltransferase CJJ81176_1151 104 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 121613703 Common - hypothetical protein CJJ81176_1417 13 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 121612267 Common - ankyrin repeat protein CJJ81176_0851 40 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 121612713 Common - low molecular weight phosphotyrosine protein phosphatase family protein CJJ81176_1274 128 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 121613241 Common - penicillin-binding protein CJJ81176_0550 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 121612848 Common argB acetylglutamate kinase CJJ81176_0251 219 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 121612496 Common dcd deoxycytidine triphosphate deaminase CJJ81176_1309 153 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 121613114 Common pyrH uridylate kinase CJJ81176_1290 227 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 121613073 Common - hypothetical protein CJJ81176_0661 56 COG2861 COG2861, Uncharacterized protein conserved in bacteria Function unknown 121612544 Common - adenylylsulfate kinase CJJ81176_1414 140 COG0529 CysC, Adenylylsulfate kinase and related kinases Inorganic ion transport and metabolism 121612413 Pathogen - hypothetical protein CJJ81176_1709 1 None None None 121612735 Common - acetyltransferase, GNAT family CJJ81176_1330 16 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 121613259 Common - hypothetical protein CJJ81176_0149 11 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 121613446 Common - pyruvate ferredoxin/flavodoxin oxidoreductase CJJ81176_1469 123 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 121612470 Common fabD malonyl CoA-acyl carrier protein transacylase CJJ81176_0151 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 121612727 Common sixA phosphohistidine phosphatase SixA CJJ81176_1020 58 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 121613082 Common nuoC NADH dehydrogenase subunit C CJJ81176_1562 169 COG0852 NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit Energy production and conversion 121613025 Common petC ubiquinol--cytochrome c reductase, cytochrome c1 subunit CJJ81176_1199 11 COG2857 CYT1, Cytochrome c1 Energy production and conversion 121613434 Common topA DNA topoisomerase I CJJ81176_1678 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 121612276 Common ddl D-alanyl-alanine synthetase A CJJ81176_0819 211 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 121613717 Common pta phosphate acetyltransferase CJJ81176_0711 165 COG0280 Pta, Phosphotransacetylase Energy production and conversion 121612902 Common ccoQ cytochrome c oxidase, cbb3-type, subunit IV CJJ81176_1480 7 COG4736 CcoQ, Cbb3-type cytochrome oxidase, subunit 3 Posttranslational modification, protein turnover, chaperones 121612366 Pathogen - hypothetical protein CJJ81176_0698 1 None None None 121613712 Common - conserved hypothetical protein TIGR00150 CJJ81176_0694 138 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 121613673 Common rplX 50S ribosomal protein L24 CJJ81176_1693 204 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 121613411 Common thrC threonine synthase CJJ81176_0833 131 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 121612300 Common - lipoprotein, putative CJJ81176_1222 66 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 121612333 Common - bifunctional putA protein, putative CJJ81176_1495 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 121612347 Common - nucleotide-binding protein CJJ81176_0398 107 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 121612811 Common trmB tRNA (guanine-N(7))-methyltransferase CJJ81176_1294 141 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 121613272 Common modA molybdenum ABC transporter, periplasmic molybdenum-binding protein CJJ81176_0325 125 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 121612694 Common mreB cell shape-determining protein MreB CJJ81176_0303 235 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 121612642 Common - HrEpiB CJJ81176_1425 220 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 121612447 Common - hydrolase, carbon-nitrogen family CJJ81176_0971 201 COG0388 COG0388, Predicted amidohydrolase General function prediction only 121613464 Common - putative sugar transferase CJJ81176_1431 2 None None None 121612328 Common cjaB CjaB protein CJJ81176_1000 129 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 121612387 Common - copper-translocating P-type ATPase CJJ81176_1176 231 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 121612455 Common - flagellin CJJ81176_1338 124 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 121613247 Pathogen mapA outer membrane liproprotein MapA CJJ81176_1048 1 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 121613419 Common cstA carbon starvation protein A CJJ81176_0924 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 121613302 Common - SPFH domain / Band 7 family protein CJJ81176_0295 50 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 121612260 Common - hypothetical protein CJJ81176_0168 9 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 121613537 Common - aminotransferase, DegT/DnrJ/EryC1/StrS family CJJ81176_1311 190 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 121612719 Common prsA ribose-phosphate pyrophosphokinase CJJ81176_0925 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 121613335 Common secG preprotein translocase subunit SecG CJJ81176_0260 10 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 121613085 Common ndk nucleoside diphosphate kinase CJJ81176_0354 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 121612564 Common - cell division protein FtsX, putative CJJ81176_1292 7 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 121612660 Common fliA flagellar biosynthesis sigma factor CJJ81176_0099 99 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 121612669 Common nrfA cytochrome c552 CJJ81176_1359 40 COG3303 NrfA, Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit Inorganic ion transport and metabolism 121612966 Common - hypothetical protein CJJ81176_0761 10 None None None 121613288 Pathogen - hypothetical protein CJJ81176_0875 1 None None None 121612748 Common atpB F0F1 ATP synthase subunit A CJJ81176_1219 199 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 121613250 Common - hypothetical protein CJJ81176_0387 1 None None None 121613563 Common fabI enoyl-(acyl carrier protein) reductase CJJ81176_1399 232 COG0623 FabI, Enoyl- acyl-carrier-protein 121612954 Common rpmG 50S ribosomal protein L33 CJJ81176_0500 93 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 121612773 Common - hypothetical protein CJJ81176_0987 6 None None None 121612307 Common ackA acetate kinase CJJ81176_0712 162 COG0282 ackA, Acetate kinase Energy production and conversion 121613601 Common nusG transcription antitermination protein NusG CJJ81176_0503 215 COG0250 NusG, Transcription antiterminator Transcription 121612345 Common - hypothetical protein CJJ81176_0847 3 COG3399 COG3399, Uncharacterized protein conserved in bacteria Function unknown 121612934 Common rho transcription termination factor Rho CJJ81176_1173 205 COG1158 Rho, Transcription termination factor Transcription 121613179 Common - endoribonuclease L-PSP, putative CJJ81176_1390 179 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 121612944 Common - hypothetical protein CJJ81176_1306 29 None None None 121613354 Common - ABC transporter, ATP-binding protein CJJ81176_1195 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 121612449 Common dapF diaminopimelate epimerase CJJ81176_1516 193 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 121612584 Common - hypothetical protein CJJ81176_1187 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 121612771 Common - HAD-superfamily hydrolase, subfamily IA, variant 1 family protein CJJ81176_1470 186 COG0546 Gph, Predicted phosphatases General function prediction only 121612884 Common - arylsulfate sulfotransferase, degenerate CJJ81176_0882 10 None None None 121612572 Common neuB N-acetylneuraminic acid synthetase CJJ81176_1334 78 COG2089 SpsE, Sialic acid synthase Cell envelope biogenesis, outer membrane 121613150 Common - hypothetical protein CJJ81176_1382 6 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 121612926 Common - oxidoreductase, short chain dehydrogenase/reductase family CJJ81176_0850 238 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 121612820 Common thrS threonyl-tRNA synthetase CJJ81176_0238 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121612637 Common - hypothetical protein CJJ81176_1102 89 COG2607 COG2607, Predicted ATPase (AAA+ superfamily) General function prediction only 121613320 Common rpsB 30S ribosomal protein S2 CJJ81176_1197 224 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 121612212 Common - undecaprenol kinase, putative CJJ81176_0237 200 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 121613052 Common - pyrazinamidase/nicotinamidase, putative CJJ81176_0154 11 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 121612257 Common pabB para-aminobenzoate synthase glutamine amidotransferase, component I CJJ81176_0878 222 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 121613565 Common rpsJ 30S ribosomal protein S10 CJJ81176_0002 244 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 121613000 Common kpsS capsule polysaccharide export protein KpsS CJJ81176_1412 30 COG3562 KpsS, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 121613627 Common rpsS 30S ribosomal protein S19 CJJ81176_1700 242 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 121612790 Common - fibronectin/fibrinogen binding protein, putative CJJ81176_1348 52 COG1293 COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP Transcription 121613386 Common - hypothetical protein CJJ81176_1238 4 COG4710 COG4710, Predicted DNA-binding protein with an HTH domain General function prediction only 121612688 Common - Na/Pi-cotransporter, putative CJJ81176_0549 73 COG1283 NptA, Na+/phosphate symporter Inorganic ion transport and metabolism 121612138 Common - enterochelin ABC transporter, periplasmic enterochelin-binding protein, authentic frameshift CJJ81176_1354 90 COG4607 CeuA, ABC-type enterochelin transport system, periplasmic component Inorganic ion transport and metabolism 121612421 Common - endonuclease III, putative CJJ81176_1101 68 COG2231 COG2231, Uncharacterized protein related to Endonuclease III DNA replication, recombination, and repair 121612781 Common - phosphatase, Ppx/GppA family CJJ81176_1251 24 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 121612797 Common ribA GTP cyclohydrolase II CJJ81176_1014 173 COG0807 RibA, GTP cyclohydrolase II Coenzyme metabolism 121612376 Common cheV chemotaxis protein CheV CJJ81176_0311 178 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 121612229 Common nusB transcription antitermination protein NusB CJJ81176_0405 179 COG0781 NusB, Transcription termination factor Transcription 121612807 Common pyrB aspartate carbamoyltransferase catalytic subunit CJJ81176_1116 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 121613221 Common pstB phosphate ABC transporter, ATP-binding protein CJJ81176_0645 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 121612133 Common - lipoprotein, putative CJJ81176_1045 4 COG3018 COG3018, Uncharacterized protein conserved in bacteria Function unknown 121613327 Common glmM phosphoglucosamine mutase CJJ81176_0383 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 121613642 Common feoB ferrous iron transport protein B CJJ81176_1397 152 COG0370 FeoB, Fe2+ transport system protein B Inorganic ion transport and metabolism 121613136 Common - amino acid ABC transporter, ATP-binding protein CJJ81176_0494 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 121612507 Common - hemin ABC transporter, permease protein, putative CJJ81176_1602 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 121612643 Common - hypothetical protein CJJ81176_1732 4 COG4467 COG4467, Uncharacterized protein conserved in bacteria Function unknown 121612801 Pathogen - hypothetical protein CJJ81176_1031 1 None None None 121612415 Common - iron-sulfur cluster binding protein CJJ81176_0111 98 COG1139 COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain Energy production and conversion 121612636 Common accD acetyl-CoA carboxylase subunit beta CJJ81176_0162 219 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 121613341 Common - hypothetical protein CJJ81176_1267 14 COG1714 COG1714, Predicted membrane protein/domain Function unknown 121612442 Common - hypothetical protein CJJ81176_0019 2 None None None 121613680 Common wlaX polysaccharide biosynthesis protein CJJ81176_1149 34 COG3298 COG3298, Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA replication, recombination, and repair 121613013 Common - putative transmembrane transport protein CJJ81176_1060 8 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 121612244 Pathogen - hypothetical protein CJJ81176_1097 1 None None None 121613705 Common pdxJ pyridoxal phosphate biosynthetic protein PdxJ CJJ81176_1252 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 121613606 Common - hypothetical protein CJJ81176_1179 34 COG3809 COG3809, Uncharacterized protein conserved in bacteria Function unknown 121613743 Common - amino acid ABC transporter, permease protein PEB1 CJJ81176_0926 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 121612352 Common - hypothetical protein CJJ81176_0288 29 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 121613076 Common hisA phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase CJJ81176_1588 215 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 121613420 Common fliE flagellar hook-basal body protein FliE CJJ81176_0551 38 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 121613618 Common - cryptic C4-dicarboxylate transporter DcuD, authentic frameshift CJJ81176_1391 24 COG3069 DcuC, C4-dicarboxylate transporter Energy production and conversion 121612658 Common - HIT family protein CJJ81176_0907 230 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 121612872 Common flgK flagellar hook-associated protein FlgK CJJ81176_1459 96 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 121612165 Common lon ATP-dependent protease La CJJ81176_1091 224 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 121613449 Common - glutathionylspermidine synthase family protein CJJ81176_0396 53 COG0754 Gsp, Glutathionylspermidine synthase Amino acid transport and metabolism 121613486 Common - MloB CJJ81176_1538 62 COG2865 COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen Transcription 121613620 Common pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase CJJ81176_1085 196 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 121613207 Common comEA competence protein ComEA CJJ81176_0037 103 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 121612490 Common - hypothetical protein CJJ81176_1389 38 COG2964 COG2964, Uncharacterized protein conserved in bacteria Function unknown 121613552 Common argG argininosuccinate synthase CJJ81176_0692 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 121612550 Common - DNA-binding response regulator CJJ81176_1483 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 121612626 Common - hypothetical protein CJJ81176_1650 25 COG3470 Tpd, Uncharacterized protein probably involved in high-affinity Fe2+ transport Inorganic ion transport and metabolism 121612878 Common - outer membrane protein, OMP85 family CJJ81176_0164 155 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 121613094 Common - coproporphyrinogen III oxidase CJJ81176_0386 196 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 121612497 Common moaA molybdenum cofactor biosynthesis protein A CJJ81176_0197 202 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 121613479 Common rplK 50S ribosomal protein L11 CJJ81176_0505 247 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 121613401 Common - hypothetical protein CJJ81176_0170 4 COG2740 COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination Transcription 121613477 Pathogen - hypothetical protein CJJ81176_0402 1 COG2717 COG2717, Predicted membrane protein Function unknown 121612392 Common dnaJ-2 co-chaperone protein DnaJ CJJ81176_1276 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 121613585 Common - thioesterase family protein CJJ81176_0988 117 COG0824 FcbC, Predicted thioesterase General function prediction only 121612156 Common cheW purine-binding chemotaxis protein CheW CJJ81176_0309 128 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 121613393 Common thyX FAD-dependent thymidylate synthase CJJ81176_0053 46 COG1351 THY1, Predicted alternative thymidylate synthase Nucleotide transport and metabolism 121612359 Common pepF oligoendopeptidase F CJJ81176_1117 87 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 121612148 Common - cytochrome c family protein CJJ81176_0064 14 COG2864 FdnI, Cytochrome b subunit of formate dehydrogenase Energy production and conversion 121613292 Common - beta-1,4-N-acetylgalactosaminyltransferase CJJ81176_1160 3 None None None 121613239 Common ispE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase CJJ81176_1122 111 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 121612129 Common - type I restriction-modification system, M subunit CJJ81176_0776 157 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 121612173 Common aspS aspartyl-tRNA synthetase CJJ81176_0668 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121612224 Common rpmE 50S ribosomal protein L31 CJJ81176_0191 179 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 121613472 Common - ferrous iron transport protein B, authentic frameshift CJJ81176_1396 160 COG0370 FeoB, Fe2+ transport system protein B Inorganic ion transport and metabolism 121612281 Pathogen - invasion phenotype protein CJJ81176_0708 2 None None None 121613687 Common glyQ glycyl-tRNA synthetase subunit alpha CJJ81176_0727 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 121612953 Pathogen - hypothetical protein CJJ81176_1184 1 None None None 121612195 Common - lysine decarboxylase family protein CJJ81176_0091 106 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 121612217 Common - TonB-dependent receptor, putative, degenerate CJJ81176_0471 129 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 121613226 Common - lipoprotein, putative CJJ81176_0124 22 COG3014 COG3014, Uncharacterized protein conserved in bacteria Function unknown 121612104 Common rpsG 30S ribosomal protein S7 CJJ81176_0512 221 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 121612314 Pathogen - membrane protein, putative, degenerate CJJ81176_0041 1 COG3477 COG3477, Predicted periplasmic/secreted protein Function unknown 121613233 Common metA homoserine O-succinyltransferase CJJ81176_0022 64 COG1897 MetA, Homoserine trans-succinylase Amino acid transport and metabolism 121613500 Pathogen - hypothetical protein CJJ81176_0515 1 None None None 121612912 Common pyk pyruvate kinase CJJ81176_0415 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 121612259 Pathogen - hypothetical protein CJJ81176_0522 1 None None None 121613312 Common - GTP-binding protein CJJ81176_0436 40 COG4988 CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 121612810 Common - dihydroorotase CJJ81176_1210 168 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 121613417 Pathogen - hypothetical protein CJJ81176_0592 1 None None None 121612389 Common - molybdopterin biosynthesis MoeA protein, putative CJJ81176_0873 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 121612623 Common kdsB 3-deoxy-manno-octulosonate cytidylyltransferase CJJ81176_0834 137 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 121613530 Common - lipoprotein, putative CJJ81176_0126 25 COG3417 FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) General function prediction only 121612817 Common tlyA hemolysin A CJJ81176_0616 130 COG1189 COG1189, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 121613245 Common - dipeptidyl-peptidase CJJ81176_1680 67 COG2936 COG2936, Predicted acyl esterases General function prediction only 121612294 Common - conserved hypothetical protein, authentic frameshift CJJ81176_0266 12 COG2703 COG2703, Hemerythrin Inorganic ion transport and metabolism 121613675 Common trpS tryptophanyl-tRNA synthetase CJJ81176_0411 238 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121613497 Common - 2-oxoglutarate/malate translocator CJJ81176_0087 7 None None None 121612179 Common - hypothetical protein CJJ81176_0611 7 None None None 121612278 Common - NifU family protein CJJ81176_1630 83 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 121612693 Common - type II restriction-modification enzyme CJJ81176_0068 66 COG1002 COG1002, Type II restriction enzyme, methylase subunits Defense mechanisms 121613160 Common folD folD bifunctional protein CJJ81176_0871 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 121613127 Common - hypothetical protein CJJ81176_0917 62 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 121613669 Common - hypothetical protein CJJ81176_0517 10 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 121613490 Pathogen cdtC cytolethal distending toxin, subunit C CJJ81176_0114 2 None None None 121612777 Common - ABC transporter, periplasmic substrate-binding protein, putative CJJ81176_1639 60 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 121612250 Common - competence/damage-inducible domain protein CJJ81176_1081 190 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 121613333 Common - tungstate ABC transporter, permease protein, putative CJJ81176_1524 107 COG4662 TupA, ABC-type tungstate transport system, periplasmic component Coenzyme metabolism 121612346 Common metS methionyl-tRNA synthetase CJJ81176_0855 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121612262 Common rpsQ 30S ribosomal protein S17 CJJ81176_1695 215 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 121613412 Common - D12 class N6 adenine-specific DNA methyltransferase CJJ81176_0240 14 COG3392 COG3392, Adenine-specific DNA methylase DNA replication, recombination, and repair 121612829 Common rplU 50S ribosomal protein L21 CJJ81176_0129 163 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 121613080 Common - radical SAM domain protein CJJ81176_0196 79 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 121612215 Common - hypothetical protein CJJ81176_1022 5 None None None 121612361 Common - hypothetical protein CJJ81176_0590 4 None None None 121613466 Common - hypothetical protein CJJ81176_0564 1 None None None 121612238 Common - hypothetical protein CJJ81176_1487 11 COG2952 COG2952, Uncharacterized protein conserved in bacteria Function unknown 121613535 Pathogen - hypothetical protein CJJ81176_0232 2 None None None 121612401 Common - tat domain protein CJJ81176_1505 1 None None None 121612302 Common - ferredoxin, 4Fe-4S CJJ81176_0355 104 COG1142 HycB, Fe-S-cluster-containing hydrogenase components 2 Energy production and conversion 121612611 Common - sensory box sensor histidine kinase, putative CJJ81176_1484 212 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 121612221 Common murC UDP-N-acetylmuramate--L-alanine ligase CJJ81176_1074 207 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 121613561 Common - coproporphyrinogen III oxidase CJJ81176_0608 205 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 121613074 Common rpoZ DNA-directed RNA polymerase subunit omega CJJ81176_1289 8 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 121612737 Common lolA outer-membrane lipoprotein carrier protein CJJ81176_0967 11 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 121612985 Pathogen - hypothetical protein CJJ81176_0247 1 None None None 121613120 Common - Maf-like protein CJJ81176_0535 133 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 121613676 Common - cytochrome c family protein CJJ81176_1039 1 COG2863 COG2863, Cytochrome c553 Energy production and conversion 121613360 Pathogen ctsT transformation system protein CJJ81176_1095 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 121613660 Pathogen - hypothetical protein CJJ81176_0245 1 None None None 121613742 Common - NADP-dependent malic enzyme, truncation CJJ81176_1304 191 COG0281 SfcA, Malic enzyme Energy production and conversion 121612601 Common - hypothetical protein CJJ81176_1452 5 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 121613616 Common - metallo-beta-lactamase family protein CJJ81176_0830 193 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 121612537 Common - hypothetical protein CJJ81176_0034 28 COG1479 COG1479, Uncharacterized conserved protein Function unknown 121612730 Common metF 5,10-methylenetetrahydrofolate reductase CJJ81176_1217 143 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 121613525 Common - hypothetical protein CJJ81176_0813 8 None None None 121612338 Common ciaB invasion antigen B CJJ81176_0921 7 None None None 121612320 Common - amino acid ABC tansporter, permease protein, His/Glu/Gln/Arg/opine family CJJ81176_0910 182 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 121612368 Common tsf elongation factor Ts CJJ81176_1196 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 121612284 Common - hypothetical protein CJJ81176_0646 2 None None None 121612271 Common - hypothetical protein CJJ81176_0072 27 COG2859 COG2859, Uncharacterized protein conserved in bacteria Function unknown 121613208 Common - transcriptional regulator, putative CJJ81176_0491 64 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 121612861 Common trx thioredoxin CJJ81176_0183 235 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 121613579 Common apt adenine phosphoribosyltransferase CJJ81176_0934 170 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 121613257 Common ggt gamma-glutamyltransferase CJJ81176_0067 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 121612433 Common rplI 50S ribosomal protein L9 CJJ81176_0691 214 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 121612718 Pathogen - alpha-2,3-sialyltransferase CJJ81176_1157 4 None None None 121613229 Common napG quinol dehydrogenase periplasmic component CJJ81176_0802 61 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 121613069 Common - hypothetical protein CJJ81176_1683 12 None None None 121613640 Common - Na+/H+ antiporter family protein CJJ81176_0849 42 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 121612312 Common ctsW transformation system protein CJJ81176_1047 8 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 121613188 Pathogen - hypothetical protein CJJ81176_0278 1 None None None 121612115 Common - hypothetical protein CJJ81176_0639 22 COG2845 COG2845, Uncharacterized protein conserved in bacteria Function unknown 121613217 Common - oxidoreductase, putative CJJ81176_1508 131 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 121612867 Common - hypothetical protein CJJ81176_1185 8 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 121612380 Common - Mg chelatase-related protein CJJ81176_0221 189 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 121612172 Common - CoA-binding domain protein CJJ81176_0846 124 COG1832 COG1832, Predicted CoA-binding protein General function prediction only 121612561 Pathogen - DnaJ domain protein CJJ81176_1053 2 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 121613033 Common pgk phosphoglycerate kinase CJJ81176_1401 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 121612794 Common - major facilitator family transporter CJJ81176_0361 22 None None None 121613265 Common ogt methylated-DNA--protein-cysteine S-methyltransferase CJJ81176_0853 219 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 121612850 Common - hypothetical protein CJJ81176_1104 66 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 121613397 Common - hypothetical protein CJJ81176_1314 13 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 121612149 Common rplF 50S ribosomal protein L6 CJJ81176_1689 234 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 121613220 Common serS seryl-tRNA synthetase CJJ81176_0412 243 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 121612765 Common pglI general glycosylation pathway protein CJJ81176_1145 198 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 121613736 Common - hypothetical protein CJJ81176_1016 5 None None None 121612746 Common rplN 50S ribosomal protein L14 CJJ81176_1694 247 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 121612973 Common - hypothetical protein CJJ81176_0449 132 COG1739 COG1739, Uncharacterized conserved protein Function unknown 121613089 Common - rhomboid family protein CJJ81176_1021 156 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 121613448 Common jlpA surface-exposed lipoprotein CJJ81176_1002 5 None None None 121613637 Pathogen - hypothetical protein CJJ81176_0594 2 None None None 121613701 Common - putative sugar transferase CJJ81176_1433 129 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 121613572 Common - hypothetical protein CJJ81176_1409 3 None None None 121613112 Pathogen - putative periplasmic protein CJJ81176_0526 1 None None None 121612488 Common - hypothetical protein CJJ81176_0437 52 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 121612846 Pathogen - hypothetical protein CJJ81176_0285 1 None None None 121612206 Common - hypothetical protein CJJ81176_1223 77 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 121612517 Common - hydrolase, carbon-nitrogen family CJJ81176_1076 24 COG0388 COG0388, Predicted amidohydrolase General function prediction only 121612422 Common - zinc transporter ZupT CJJ81176_0290 90 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 121613696 Common - rod shape-determining protein RodA, putative CJJ81176_1297 206 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 121612657 Common - TonB domain protein CJJ81176_0146 5 None None None 121613517 Common cynT carbonic anhydrase CJJ81176_0262 149 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 121612181 Common - hypothetical protein CJJ81176_0744 6 None None None 121612411 Common - hypothetical protein CJJ81176_0888 1 None None None 121613210 Common hemL glutamate-1-semialdehyde aminotransferase CJJ81176_0869 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 121612269 Common - TPR domain protein CJJ81176_0413 14 None None None 121612836 Common aat leucyl/phenylalanyl-tRNA--protein transferase CJJ81176_1127 134 COG2360 Aat, Leu/Phe-tRNA-protein transferase Posttranslational modification, protein turnover, chaperones 121612772 Common ubiE ubiquinone/menaquinone biosynthesis methyltransferase CJJ81176_0346 211 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 121613027 Common - RloH CJJ81176_1535 26 COG3593 COG3593, Predicted ATP-dependent endonuclease of the OLD family DNA replication, recombination, and repair 121613020 Common ribH riboflavin synthase subunit beta CJJ81176_0406 230 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 121612729 Common - DNA-binding response regulator CJJ81176_1241 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 121612427 Common - ModE repressor domain protein CJJ81176_1499 55 COG2005 ModE, N-terminal domain of molybdenum-binding protein General function prediction only 121612240 Common - peptide ABC transporter, permease protein CJJ81176_1567 175 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 121613621 Common ilvA threonine dehydratase CJJ81176_0845 223 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 121613042 Common htrA protease DO CJJ81176_1242 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 121613172 Common flgD flagellar basal body rod modification protein CJJ81176_0080 92 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 121612558 Common secY preprotein translocase subunit SecY CJJ81176_1685 240 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 121613548 Common tilS tRNA(Ile)-lysidine synthetase CJJ81176_1446 184 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 121612620 Common - chromosome partitioning protein, ParB family CJJ81176_0136 183 COG1475 Spo0J, Predicted transcriptional regulators Transcription 121613395 Common - hypothetical protein CJJ81176_0577 28 COG3819 COG3819, Predicted membrane protein Function unknown 121613223 Common lgt prolipoprotein diacylglyceryl transferase CJJ81176_0431 206 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 121612391 Common - fumarylacetoacetate hydrolase family protein CJJ81176_0048 169 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 121612662 Common - hypothetical protein CJJ81176_0591 2 None None None 121612705 Common - hypothetical protein CJJ81176_0538 90 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 121612980 Common - hypothetical protein CJJ81176_1461 22 None None None 121613458 Common - ABC transporter, permease protein CJJ81176_0754 188 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 121612505 Common - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family CJJ81176_0964 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 121612353 Common msrB methionine sulfoxide reductase B CJJ81176_1130 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 121612724 Common hemA glutamyl-tRNA reductase CJJ81176_0567 180 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 121613158 Common - hypothetical protein CJJ81176_0996 10 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 121612122 Common - oxaloacetate decarboxylase, alpha subunit, putative CJJ81176_0940 185 COG5016 COG5016, Pyruvate/oxaloacetate carboxyltransferase Energy production and conversion 121612901 Common - HAD-superfamily phosphatase, subfamily IIIC CJJ81176_1318 29 COG3882 FkbH, Predicted enzyme involved in methoxymalonyl-ACP biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 121612855 Common - hypothetical protein CJJ81176_1577 63 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 121613047 Common - peptidase family protein CJJ81176_0096 5 COG3271 COG3271, Predicted double-glycine peptidase General function prediction only 121612999 Common - hypothetical protein CJJ81176_0074 16 COG4487 COG4487, Uncharacterized protein conserved in bacteria Function unknown 121613608 Common flaG flagellar protein FlaG CJJ81176_0572 7 COG1334 FlaG, Uncharacterized flagellar protein FlaG Cell motility and secretion 121613553 Common - oxidoreductase, zinc-binding dehydrogenase family CJJ81176_1533 204 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 121613684 Common hldE D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase CJJ81176_1167 148 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 121613198 Common - peptidase, U32 family CJJ81176_0724 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 121612618 Pathogen - hypothetical protein CJJ81176_0241 1 None None None 121613588 Common uvrC excinuclease ABC subunit C CJJ81176_1261 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 121612451 Common accC-2 biotin carboxylase CJJ81176_1307 232 COG0439 AccC, Biotin carboxylase Lipid metabolism 121613095 Pathogen - hypothetical protein CJJ81176_1316 2 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 121612991 Common - prevent-host-death family protein CJJ81176_0818 1 None None None 121612975 Common hemC porphobilinogen deaminase CJJ81176_0570 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 121612552 Common pnp polynucleotide phosphorylase/polyadenylase CJJ81176_1269 233 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 121613422 Common - nitroreducatase family protein, authentic frameshift CJJ81176_1083 76 COG0778 NfnB, Nitroreductase Energy production and conversion 121612822 Common - hypothetical protein CJJ81176_0915 47 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 121612443 Common - putative sugar transferase CJJ81176_1420 3 None None None 121612796 Common - ATP-dependent DNA helicase, UvrD/REP family CJJ81176_1474 220 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 121612809 Common - crcB protein CJJ81176_0545 184 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 121612678 Common - pantothenate kinase CJJ81176_0417 17 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 121613595 Common miaB tRNA-i(6)A37 thiotransferase enzyme MiaB CJJ81176_0483 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 121612245 Common pdxA 4-hydroxythreonine-4-phosphate dehydrogenase CJJ81176_1253 158 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 121613724 Common polA DNA polymerase I CJJ81176_0360 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 121612629 Common - TonB-dependent receptor, putative, authentic frameshift CJJ81176_1621 12 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 121613050 Common - hypothetical protein CJJ81176_0327 10 COG2830 COG2830, Uncharacterized protein conserved in bacteria Function unknown 121613328 Common - hypothetical protein CJJ81176_0484 7 None None None 121612958 Common gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase CJJ81176_1211 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 121613092 Common - hypothetical protein CJJ81176_0649 127 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 121612914 Common queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase CJJ81176_0605 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 121613285 Common - 2-hydroxyacid dehydrogenase CJJ81176_0397 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 121613658 Common mutY A/G-specific adenine glycosylase CJJ81176_1607 233 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 121612575 Common metK S-adenosylmethionine synthetase CJJ81176_1114 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 121612938 Common - methyl-accepting chemotaxis protein CJJ81176_1549 116 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 121612565 Pathogen - hypothetical protein CJJ81176_1324 1 None None None 121613499 Pathogen - putative periplasmic protein CJJ81176_1741 1 None None None 121612136 Common - putative nucleotide-sugar epimerase-dehydratase CJJ81176_1430 154 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 121613427 Common - hypothetical protein CJJ81176_0156 197 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 121613009 Common - putative inner membrane protein translocase component YidC CJJ81176_0981 215 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 121612377 Pathogen - hypothetical protein CJJ81176_0204 1 None None None 121613583 Common guaB inositol-5-monophosphate dehydrogenase CJJ81176_1078 242 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 121613515 Common - methyl-accepting chemotaxis protein CJJ81176_1205 124 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 121613134 Common hrcA heat-inducible transcription repressor CJJ81176_0773 16 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 121612641 Common - type I restriction-modification enzyme, R subunit CJJ81176_1534 137 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 121613235 Common - methyl-accepting chemotaxis protein CJJ81176_0473 76 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 121613142 Common - methyltransferase, putative CJJ81176_0618 51 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 121613317 Common dsbD thiol:disulfide interchange protein DsbD CJJ81176_0631 103 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 121612228 Common rpoN RNA polymerase factor sigma-54 CJJ81176_0696 143 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 121613372 Common galE UDP-glucose 4-epimerase CJJ81176_1148 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 121612933 Common accA acetyl-CoA carboxylase carboxyltransferase subunit alpha CJJ81176_0470 178 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 121612885 Common sdaC serine transporter CJJ81176_1616 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 121612520 Common - glycerol-3-phosphate transporter, authentic frameshift CJJ81176_0316 46 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 121613058 Common argH argininosuccinate lyase CJJ81176_0938 217 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 121612370 Common - HrgA protein CJJ81176_1589 15 COG2958 COG2958, Uncharacterized protein conserved in bacteria Function unknown 121613738 Common - hypothetical protein CJJ81176_1485 46 COG2836 COG2836, Uncharacterized conserved protein Function unknown 121613408 Common - hypothetical protein CJJ81176_0428 8 COG3266 DamX, Uncharacterized protein conserved in bacteria Function unknown 121612615 Common - RNB-like protein CJJ81176_0659 192 COG0557 VacB, Exoribonuclease R Transcription 121612210 Common hom homoserine dehydrogenase CJJ81176_0185 217 COG0460 ThrA, Homoserine dehydrogenase Amino acid transport and metabolism 121612804 Common rpsE 30S ribosomal protein S5 CJJ81176_1687 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 121613603 Common aspC aspartate aminotransferase CJJ81176_0783 238 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 121612409 Common - citrate transporter, authentic frameshift CJJ81176_0235 31 COG2851 CitM, H+/citrate symporter Energy production and conversion 121612960 Common - transcriptional regulator CJJ81176_1542 151 COG1733 COG1733, Predicted transcriptional regulators Transcription 121613433 Common hup DNA-binding protein HU CJJ81176_1731 199 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 121612535 Common - hypothetical protein CJJ81176_0188 5 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 121613704 Common fabZ (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase CJJ81176_0300 187 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 121613282 Common - hypothetical protein CJJ81176_1131 46 COG2833 COG2833, Uncharacterized protein conserved in bacteria Function unknown 121613380 Common - peptidase, M23/M37 family CJJ81176_1249 192 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 121612711 Common pglF general glycosylation pathway protein CJJ81176_1138 170 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 121612481 Common - hypothetical protein CJJ81176_0079 5 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 121612671 Pathogen - hypothetical protein CJJ81176_1614 1 None None None 121613343 Common - conserved hypothetical protein TIGR00044 CJJ81176_0742 198 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 121612327 Common atpG F0F1 ATP synthase subunit gamma CJJ81176_0141 207 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 121612754 Common - ABC transporter, ATP-binding protein CJJ81176_0695 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 121612686 Common ilvB acetolactate synthase 3 catalytic subunit CJJ81176_0602 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 121612788 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B CJJ81176_1212 213 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 121613164 Common fur ferric uptake regulation protein CJJ81176_0423 201 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 121613012 Pathogen - hypothetical protein CJJ81176_0916 1 None None None 121612732 Common - Na+/H+ antiporter family protein CJJ81176_0032 29 COG2056 COG2056, Predicted permease General function prediction only 121612549 Common lepA GTP-binding protein LepA CJJ81176_1049 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 121613614 Common - peptidase, M23/M37 family CJJ81176_1105 189 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 121612531 Common - hypothetical protein CJJ81176_1341 4 None None None 121613527 Pathogen - hypothetical protein CJJ81176_1742 1 None None None 121612382 Common - mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain protein CJJ81176_1517 33 COG2992 Bax, Uncharacterized FlgJ-related protein General function prediction only 121613568 Common mraW S-adenosyl-methyltransferase MraW CJJ81176_0716 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 121613267 Common oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA CJJ81176_0561 113 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 121613591 Common hemD uroporphyrinogen-III synthase CJJ81176_1098 15 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 121613596 Common ispA geranyltranstransferase CJJ81176_1635 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 121612770 Common - hypothetical protein CJJ81176_1327 4 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 121613481 Common rlpA rare lipoprotein A CJJ81176_0674 137 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 121613752 Common - hypothetical protein CJJ81176_0840 3 None None None 121613716 Common rplR 50S ribosomal protein L18 CJJ81176_1688 200 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 121612503 Common - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative CJJ81176_0571 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 121612951 Common tdk thymidylate kinase CJJ81176_0787 198 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 121613362 Common - OstA family protein CJJ81176_0677 8 COG1934 COG1934, Uncharacterized protein conserved in bacteria Function unknown 121613278 Common - inner membrane metabolite transport protein YdfJ CJJ81176_0363 124 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 121613503 Common - hypothetical protein CJJ81176_0548 1 None None None 121613415 Common - acetyltransferase, GNAT family CJJ81176_0013 23 COG0456 RimI, Acetyltransferases General function prediction only 121613181 Common - ABC transporter, periplasmic substrate-binding protein CJJ81176_0750 60 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 121613086 Common - hypothetical protein CJJ81176_1041 25 COG2862 COG2862, Predicted membrane protein Function unknown 121613287 Pathogen - hypothetical protein CJJ81176_0467 1 None None None 121613254 Pathogen - exodeoxyribonuclease VII, small subunit, putative CJJ81176_1077 1 None None None 121613587 Common - hypothetical protein CJJ81176_1051 59 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 121613438 Common sdhC succinate dehydrogenase, C subunit CJJ81176_0465 49 COG2048 HdrB, Heterodisulfide reductase, subunit B Energy production and conversion 121612581 Common - hypothetical protein CJJ81176_0427 5 None None None 121612752 Common - hypothetical protein CJJ81176_1641 3 None None None 121613029 Common - thioredoxin domain protein CJJ81176_1124 6 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 121612167 Common - conserved hypothetical protein TIGR00701 CJJ81176_0385 97 COG1981 COG1981, Predicted membrane protein Function unknown 121613005 Common aroE shikimate 5-dehydrogenase CJJ81176_0429 220 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 121613125 Common - oligopeptide transporter, OPT family CJJ81176_0236 41 COG1297 COG1297, Predicted membrane protein Function unknown 121613271 Common exbB-2 TonB system transport protein ExbB CJJ81176_1619 146 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 121612838 Pathogen - hypothetical protein CJJ81176_1044 1 None None None 121612588 Common coaD phosphopantetheine adenylyltransferase CJJ81176_0788 209 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 121612815 Common - GTPase EngB CJJ81176_0678 175 COG0218 COG0218, Predicted GTPase General function prediction only 121612863 Common rpsO 30S ribosomal protein S15 CJJ81176_0892 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 121612292 Common - cytochrome c family protein CJJ81176_0075 35 COG3258 COG3258, Cytochrome c Energy production and conversion 121613543 Common ilvC ketol-acid reductoisomerase CJJ81176_0660 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 121612318 Common - amino acid ABC transporter, ATP-binding protein CJJ81176_0911 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 121612146 Common - nicotinate phosphoribosyltransferase CJJ81176_0255 115 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 121613331 Common - anion transporter CJJ81176_0085 41 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 121613177 Common rnpA ribonuclease P protein component CJJ81176_0983 5 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 121612264 Common - 3-deoxy-7-phosphoheptulonate synthase CJJ81176_0739 73 COG3200 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 121612311 Common - putative outer-membrane protein CJJ81176_0530 47 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 121613200 Common glmS D-fructose-6-phosphate amidotransferase CJJ81176_1368 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 121612108 Common - cyclopropane-fatty-acyl-phospholipid synthase, putative CJJ81176_1198 146 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 121612461 Common pabA para-aminobenzoate synthase glutamine amidotransferase, component II CJJ81176_0877 240 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 121612418 Common - thiS family protein CJJ81176_1509 7 COG1977 MoaD, Molybdopterin converting factor, small subunit Coenzyme metabolism 121613667 Common - RNA methyltransferase, TrmH family CJJ81176_0189 213 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 121613605 Pathogen - hypothetical protein CJJ81176_0207 2 None None None 121612578 Common - hydrolase, TatD family CJJ81176_0672 233 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 121613468 Pathogen - hypothetical protein CJJ81176_0772 1 None None None 121612664 Common proC pyrroline-5-carboxylate reductase CJJ81176_1094 205 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 121613062 Common - iron-sulfur cluster-binding domain protein CJJ81176_0392 81 COG0348 NapH, Polyferredoxin Energy production and conversion 121612529 Common - multidrug resistance protein, SMR family CJJ81176_0331 121 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 121612331 Common - N-acetylmuramoyl-L-alanine amidase CJJ81176_1285 182 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 121613533 Common flgI flagellar basal body P-ring protein CJJ81176_1455 105 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 121613698 Common napD napD protein CJJ81176_0806 6 COG3062 NapD, Uncharacterized protein involved in formation of periplasmic nitrate reductase Inorganic ion transport and metabolism 121612571 Common pldA phospholipase A CJJ81176_1350 52 COG2829 PldA, Outer membrane phospholipase A Cell envelope biogenesis, outer membrane 121612420 Pathogen - hypothetical protein CJJ81176_1257 1 None None None 121612542 Common lctP L-lactate permease CJJ81176_0113 105 COG1620 LldP, L-lactate permease Energy production and conversion 121612987 Common - transcriptional regulator, AraC family CJJ81176_1063 79 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 121613405 Common glyA serine hydroxymethyltransferase CJJ81176_0425 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 121613106 Common tgt queuine tRNA-ribosyltransferase CJJ81176_1028 229 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 121612698 Common - hypothetical protein CJJ81176_1573 7 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 121613022 Common mogA molybdenum cofactor biosynthesis protein CJJ81176_0748 189 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 121613298 Common alr alanine racemase CJJ81176_0914 196 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 121613574 Common - hypothetical protein CJJ81176_0312 5 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 121612336 Pathogen - peptidase family protein CJJ81176_0095 1 COG3271 COG3271, Predicted double-glycine peptidase General function prediction only 121613671 Common rplP 50S ribosomal protein L16 CJJ81176_1697 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 121612899 Common - hypothetical protein CJJ81176_0006 7 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 121612674 Common - cation efflux family protein CJJ81176_0972 202 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 121613212 Common - hypothetical protein CJJ81176_0438 17 None None None 121613505 Common livG high affinity branched-chain amino acid ABC transporter, ATP-binding protein CJJ81176_1034 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 121613219 Common cydB cytochrome d ubiquinol oxidase, subunit II CJJ81176_0119 81 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 121613630 Common glmU UDP-N-acetylglucosamine pyrophosphorylase CJJ81176_0838 220 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 121612478 Common - cation ABC transporter, periplasmic cation-binding protein CJJ81176_0179 168 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 121613529 Pathogen - hypothetical protein CJJ81176_0686 1 None None None 121612117 Common grpE co-chaperone protein GrpE CJJ81176_0774 220 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 121612252 Common selB selenocysteine-specific elongation factor CJJ81176_1381 249 COG3276 SelB, Selenocysteine-specific translation elongation factor Translation, ribosomal structure and biogenesis 121613119 Common - biotin sulfoxide reductase CJJ81176_0291 171 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 121613690 Common cyf cytochrome c553 CJJ81176_1170 11 COG2863 COG2863, Cytochrome c553 Energy production and conversion 121613162 Common luxS S-ribosylhomocysteinase CJJ81176_1213 55 COG1854 LuxS, LuxS protein involved in autoinducer AI2 synthesis Signal transduction mechanisms 121613031 Common - conserved hypothetical protein TIGR00046 CJJ81176_0192 19 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 121613036 Common pth peptidyl-tRNA hydrolase CJJ81176_0334 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 121612563 Common - thermonuclease family protein CJJ81176_0998 92 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 121613291 Common - di-/tripeptide transporter CJJ81176_0684 11 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 121613236 Common - GatB/Yqey family protein CJJ81176_0601 152 COG1610 COG1610, Uncharacterized conserved protein Function unknown 121612208 Common lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase CJJ81176_0604 170 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 121613375 Common - inner membrane metabolite transport protein YdfJ CJJ81176_0362 26 None None None 121612170 Common - integral membrane protein, MarC family CJJ81176_1129 156 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 121612515 Common - cytochrome c biogenesis protein CJJ81176_0066 94 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 121612604 Common rimM 16S rRNA processing protein RimM CJJ81176_0735 59 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 121613049 Common serB phosphoserine phosphatase SerB CJJ81176_0308 152 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 121612767 Common mrp ATP/GTP-binding protein CJJ81176_1593 229 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 121612916 Common - DnaJ domain protein CJJ81176_0977 81 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 121612438 Common - hypothetical protein CJJ81176_0198 3 None None None 121612247 Common racS sensor histidine kinase CJJ81176_1278 161 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 121612191 Common rplD 50S ribosomal protein L4 CJJ81176_1703 217 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 121612344 Common flaC flagellin subunit protein FlaC CJJ81176_0743 91 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 121613473 Common bioA adenosylmethionine--8-amino-7-oxononanoate transaminase CJJ81176_0329 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 121613611 Common hisF-2 imidazole glycerol phosphate synthase subunit HisF CJJ81176_1590 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 121612485 Common - hypothetical protein CJJ81176_0021 4 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 121612555 Common - hypothetical protein CJJ81176_1376 65 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 121612119 Common - molybdopterin biosynthesis MoeA protein, putative CJJ81176_1511 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 121612168 Common - oxidoreductase, 2OG-Fe(II) oxygenase family CJJ81176_1214 52 COG3491 PcbC, Isopenicillin N synthase and related dioxygenases General function prediction only 121612873 Common hisH imidazole glycerol phosphate synthase subunit HisH CJJ81176_1332 216 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 121612161 Common proA gamma-glutamyl phosphate reductase CJJ81176_0583 188 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 121612188 Common pglB general glycosylation pathway protein CJJ81176_1143 10 COG1287 COG1287, Uncharacterized membrane protein, required for N-linked glycosylation General function prediction only 121612431 Common - phosphate ABC transporter, permease protein PstA, putative CJJ81176_0644 221 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 121612143 Common nuoD NADH dehydrogenase subunit D CJJ81176_1561 192 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 121613148 Pathogen - hypothetical protein CJJ81176_1254 1 None None None 121613183 Common argS arginyl-tRNA synthetase CJJ81176_1190 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121612396 Common - sensor histidine kinase CJJ81176_0898 203 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 121612539 Common folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase CJJ81176_0103 155 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 121613010 Common - 7-cyano-7-deazaguanine reductase CJJ81176_0020 90 COG0780 COG0780, Enzyme related to GTP cyclohydrolase I General function prediction only 121613110 Pathogen - putative MCP-domain signal transduction protein CJJ81176_0272 1 None None None 121613556 Common - hypothetical protein CJJ81176_1617 5 None None None 121612982 Common pgm phosphoglyceromutase CJJ81176_0460 126 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 121612843 Common - cation ABC transporter, ATP-binding protein CJJ81176_0178 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 121612676 Common hslU ATP-dependent protease ATP-binding subunit CJJ81176_0689 209 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 121613098 Common - DNA-binding response regulator CJJ81176_0899 214 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 121612839 Common thiD phosphomethylpyrimidine kinase CJJ81176_1100 224 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 121612701 Pathogen - hypothetical protein CJJ81176_0950 1 None None None 121612324 Common - hypothetical protein CJJ81176_0353 7 None None None 121612494 Common - macrolide-specific efflux protein macA CJJ81176_0635 178 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 121613071 Common purM phosphoribosylaminoimidazole synthetase CJJ81176_1514 230 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 121612931 Common - hypothetical protein CJJ81176_0181 78 COG3211 PhoX, Predicted phosphatase General function prediction only 121613296 Common - lipoprotein, NLPA family CJJ81176_0793 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 121612923 Common - flagellar basal-body rod protein CJJ81176_0720 124 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 121613403 Common trpF N-(5'phosphoribosyl)anthranilate isomerase CJJ81176_0371 167 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 121612103 Common - hypothetical protein CJJ81176_0817 15 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 121613710 Common - hypothetical protein CJJ81176_0117 8 None None None 121613581 Common - hypothetical protein CJJ81176_1344 8 COG3608 COG3608, Predicted deacylase General function prediction only 121613202 Common cheY chemotaxis protein CheY CJJ81176_1136 224 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 121613423 Common sucD succinyl-CoA synthase, alpha subunit CJJ81176_0559 215 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 121612890 Common leuC isopropylmalate isomerase large subunit CJJ81176_0015 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 121613520 Common - hypothetical protein CJJ81176_1029 2 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 121612707 Common sodB superoxide dismutase, Fe CJJ81176_0205 207 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 121612355 Common - Di-/tripeptide transporter CJJ81176_0685 79 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 121612857 Pathogen - hypothetical protein CJJ81176_1096 1 None None None 121612144 Pathogen - hypothetical protein CJJ81176_1443 1 None None None 121613652 Pathogen - hypothetical protein CJJ81176_0949 1 None None None 121613156 Common - methyltransferase, putative CJJ81176_0995 59 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 121612592 Common recA recombinase A CJJ81176_1669 238 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 121612151 Common - translation-associated GTPase CJJ81176_0937 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 121612231 Common tpiA triosephosphate isomerase CJJ81176_1400 217 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 121613389 Common - hypothetical protein CJJ81176_0100 4 None None None 121613306 Common wcbK GDP-mannose 4,6-dehydratase CJJ81176_1426 227 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 121612760 Common - transcriptional regulator, TetR family CJJ81176_0391 40 COG1309 AcrR, Transcriptional regulator Transcription 121612744 Common rpsC 30S ribosomal protein S3 CJJ81176_1698 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 121613651 Common - UDP-N-acetylglucosamine 2-epimerase CJJ81176_1159 106 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 121612198 Common - methyl-accepting chemotaxis protein CJJ81176_1128 133 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 121613429 Common infA translation initiation factor IF-1 CJJ81176_1578 213 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 121612700 Common - NUDIX domain protein CJJ81176_0472 24 None None None 121612908 Common - nitroreductase family protein CJJ81176_1084 124 COG0778 NfnB, Nitroreductase Energy production and conversion 121613123 Common - aminotransferase, putative CJJ81176_0812 166 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 121612759 Common - high affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein CJJ81176_1038 137 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 121613382 Common - metallo-beta-lactamase family protein CJJ81176_0004 162 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 121613003 Common - hypothetical protein CJJ81176_0414 6 None None None 121612613 Common - lipoprotein, NLPA family CJJ81176_1215 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 121612187 Common hypA hydrogenase nickel insertion protein HypA CJJ81176_0656 76 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 121612880 Common waaC lipopolysaccharide heptosyltransferase I CJJ81176_1150 51 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 121612962 Common - integral membrane protein CJJ81176_0408 110 COG2510 COG2510, Predicted membrane protein Function unknown 121612684 Common dcuA anaerobic C4-dicarboxylate transporter CJJ81176_0123 36 COG2704 DcuB, Anaerobic C4-dicarboxylate transporter General function prediction only 121612631 Common - saccharopine dehydrogenase CJJ81176_0208 53 COG1748 LYS9, Saccharopine dehydrogenase and related proteins Amino acid transport and metabolism 121613436 Common - hypothetical protein CJJ81176_1651 17 COG4393 COG4393, Predicted membrane protein Function unknown 121612949 Common - folB domain protein CJJ81176_0380 2 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 121612349 Common fldA flavodoxin FldA CJJ81176_1384 77 COG0716 FldA, Flavodoxins Energy production and conversion 121613451 Pathogen - hypothetical protein CJJ81176_0206 2 None None None 121612407 Common rplS 50S ribosomal protein L19 CJJ81176_0737 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 121613319 Common - ABC transporter, ATP-binding protein CJJ81176_0897 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 121612824 Pathogen - cytochrome c family protein CJJ81176_0194 1 COG2863 COG2863, Cytochrome c553 Energy production and conversion 121613053 Common petA ubiquinol--cytochrome c reductase, iron-sulfur subunit CJJ81176_1201 97 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 121612814 Common nuoG NADH dehydrogenase subunit G CJJ81176_1558 181 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 121612445 Common - FlhB domain protein CJJ81176_0864 120 COG2257 COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB Function unknown 121613345 Common - transporter, LysE family CJJ81176_1070 13 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 121613043 Common folP dihydropteroate synthase CJJ81176_0613 217 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 121613359 Common pglG general glycosylation pathway protein CJJ81176_1137 9 None None None 121612286 Common rpsN 30S ribosomal protein S14 CJJ81176_1691 185 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 121613349 Common atpE F0F1 ATP synthase subunit C CJJ81176_0943 4 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 121612786 Common carA carbamoyl phosphate synthase small subunit CJJ81176_1486 232 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 121613056 Common - hypothetical protein CJJ81176_0482 44 COG2121 COG2121, Uncharacterized protein conserved in bacteria Function unknown 121613166 Common - transcriptional regulator, putative CJJ81176_1531 131 COG1733 COG1733, Predicted transcriptional regulators Transcription 121612379 Common cjaC cjaC protein CJJ81176_0757 182 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 121613310 Common hisF-1 imidazoleglycerol phosphate synthase, cyclase subunit CJJ81176_1331 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 121612372 Common - hypothetical protein CJJ81176_1493 32 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 121613132 Common adk adenylate kinase CJJ81176_0667 228 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 121612134 Common - hypothetical protein CJJ81176_1006 7 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 121613324 Pathogen - hypothetical protein CJJ81176_1658 1 None None None 121613090 Common rplC 50S ribosomal protein L3 CJJ81176_0001 216 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 121612942 Common - HAD-superfamily subfamily IB hydrolase CJJ81176_0756 59 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 121612993 Common thiE thiamine-phosphate pyrophosphorylase CJJ81176_1099 189 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 121612304 Common rpe ribulose-phosphate 3-epimerase CJJ81176_0476 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 121612851 Common - RNA pseudouridine synthase family protein CJJ81176_0003 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 121613513 Common cheB protein-glutamate methylesterase CheB CJJ81176_0931 140 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 121613726 Common - hypothetical protein CJJ81176_1062 11 None None None 121612567 Common dapB dihydrodipicolinate reductase CJJ81176_0228 215 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 121613635 Pathogen - hypothetical protein CJJ81176_0076 1 None None None 121613007 Common tkt transketolase CJJ81176_1636 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 121613664 Common rpsL 30S ribosomal protein S12 CJJ81176_0511 228 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 121613017 Common - methyl-accepting chemotaxis protein CJJ81176_1498 137 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 121613750 Pathogen - hypothetical protein CJJ81176_0528 1 None None None 121612655 Common - antioxidant, AhpC/Tsa family CJJ81176_0298 225 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 121613144 Common - thiredoxin, homolog CJJ81176_1655 17 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 121612577 Common purU formyltetrahydrofolate deformylase CJJ81176_0811 220 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 121612226 Common trpB tryptophan synthase subunit beta CJJ81176_0372 224 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 121613350 Common - Ser/Thr protein phosphatase family protein CJJ81176_0862 93 COG1408 COG1408, Predicted phosphohydrolases General function prediction only 121612120 Common nrfH cytochrome c-type protein nrfH CJJ81176_1360 53 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 121613315 Common - hypothetical protein CJJ81176_0581 29 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 121612648 Common - PDZ domain protein CJJ81176_1634 5 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones