Polaromonas naphthalenivorans CJ2 plasmid pPNAP04, complete sequence NC_008760 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 121583403 Common - hypothetical protein Pnap_4676 4 None None None 121583378 Common - transposase IS3/IS911 family protein Pnap_4650 60 None None None 121583410 Common - ADP-ribosyl-(dinitrogen reductase) hydrolase Pnap_4684 83 COG1397 DraG, ADP-ribosylglycohydrolase Posttranslational modification, protein turnover, chaperones 121583436 Nonpathogen - hypothetical protein Pnap_4714 1 None None None 121583477 Common - 2-oxoacid dehydrogenase subunit E1 Pnap_4757 137 COG2609 AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component Energy production and conversion 121583389 Common - ATP/GTP-binding protein Pnap_4662 22 COG2301 CitE, Citrate lyase beta subunit Carbohydrate transport and metabolism 121583443 Common - FAD dependent oxidoreductase Pnap_4721 31 COG4529 COG4529, Uncharacterized protein conserved in bacteria Function unknown 121583392 Common - hypothetical protein Pnap_4665 8 None None None 121583461 Nonpathogen - hypothetical protein Pnap_4739 8 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 121583415 Nonpathogen - hypothetical protein Pnap_4689 1 None None None 121583382 Common - stress protein Pnap_4654 29 COG2310 TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Signal transduction mechanisms 121583421 Nonpathogen - hypothetical protein Pnap_4695 1 None None None 121583347 Common - D-serine dehydratase Pnap_4614 36 COG3048 DsdA, D-serine dehydratase Amino acid transport and metabolism 121583368 Common - Recombinase Pnap_4640 47 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 121583422 Common - beta-lactamase domain protein Pnap_4696 91 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 121583433 Common - hypothetical protein Pnap_4710 9 None None None 121583357 Common - Uncharacterized protein UPF0065 Pnap_4625 75 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 121583441 Common - protein of unknown function DUF1458 Pnap_4719 19 COG3360 COG3360, Uncharacterized conserved protein Function unknown 121583472 Common - putative transposase Pnap_4750 19 None None None 121583409 Nonpathogen - hypothetical protein Pnap_4683 1 None None None 121583398 Common - hypothetical protein Pnap_4671 21 COG4380 COG4380, Uncharacterized protein conserved in bacteria Function unknown 121583350 Nonpathogen - hypothetical protein Pnap_4618 1 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 121583438 Common - protein of unknown function DUF1326 Pnap_4716 17 COG5588 COG5588, Uncharacterized conserved protein Function unknown 121583426 Common - transposase IS66 Pnap_4702 34 None None None 121583413 Common - integrase, catalytic region Pnap_4687 22 None None None 121583376 Common - transposase, IS4 family protein Pnap_4648 31 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 121583345 Nonpathogen - hypothetical protein Pnap_4612 2 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 121583384 Common - stress protein Pnap_4657 28 COG2310 TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Signal transduction mechanisms 121583462 Common - putative transposase Pnap_4740 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 121583449 Nonpathogen - hypothetical protein Pnap_4727 5 None None None 121583474 Common - hypothetical protein Pnap_4752 29 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 121583435 Common - transposase IS116/IS110/IS902 family protein Pnap_4712 83 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583407 Nonpathogen - hypothetical protein Pnap_4681 1 None None None 121583459 Common - excinuclease ABC, A subunit Pnap_4737 235 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 121583355 Common - oxidoreductase domain protein Pnap_4623 181 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 121583479 Common - putative transcriptional regulator, AsnC family Pnap_4759 125 COG1522 Lrp, Transcriptional regulators Transcription 121583450 Common - protein of unknown function DUF1486 Pnap_4728 17 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 121583464 Common - regulatory proteins, IclR Pnap_4742 94 COG1414 IclR, Transcriptional regulator Transcription 121583466 Common - Extracellular ligand-binding receptor Pnap_4744 128 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 121583386 Common - hypothetical protein Pnap_4659 24 None None None 121583456 Nonpathogen - hypothetical protein Pnap_4734 2 None None None 121583351 Common - hypothetical protein Pnap_4619 17 None None None 121583451 Common - hypothetical protein Pnap_4729 29 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 121583395 Common - stress protein Pnap_4668 27 COG2310 TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Signal transduction mechanisms 121583418 Common - parB-like partition proteins Pnap_4692 109 COG1475 Spo0J, Predicted transcriptional regulators Transcription 121583424 Common - parB-like partition proteins Pnap_4698 172 COG1475 Spo0J, Predicted transcriptional regulators Transcription 121583430 Common - transposase IS3/IS911 family protein Pnap_4707 12 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583454 Common - Glutathione S-transferase, C-terminal domain Pnap_4732 97 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 121583361 Nonpathogen - hypothetical protein Pnap_4629 1 None None None 121583444 Common - phage Tail Collar domain protein Pnap_4722 35 COG4675 MdpB, Microcystin-dependent protein Function unknown 121583353 Common - hypothetical protein Pnap_4621 6 None None None 121583447 Common - transposase Pnap_4725 15 None None None 121583428 Common - transposase IS66 Pnap_4705 60 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583388 Common - hypothetical protein Pnap_4661 24 None None None 121583468 Common - inner-membrane translocator Pnap_4746 149 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 121583399 Common - hypothetical protein Pnap_4672 21 COG4259 COG4259, Uncharacterized protein conserved in bacteria Function unknown 121583416 Common - protein of unknown function DUF465 Pnap_4690 18 COG2841 COG2841, Uncharacterized protein conserved in bacteria Function unknown 121583394 Common - von Willebrand factor, type A Pnap_4667 25 COG4245 TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain General function prediction only 121583374 Common - hypothetical protein Pnap_4646 8 None None None 121583379 Nonpathogen - hypothetical protein Pnap_4651 1 None None None 121583400 Common - hypothetical protein Pnap_4673 2 None None None 121583471 Nonpathogen - hypothetical protein Pnap_4749 3 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 121583366 Nonpathogen - hypothetical protein Pnap_4637 2 None None None 121583420 Common - initiator RepB protein Pnap_4694 10 COG5527 COG5527, Protein involved in initiation of plasmid replication DNA replication, recombination, and repair 121583442 Common - hypothetical protein Pnap_4720 4 None None None 121583452 Common - histone family protein nucleoid-structuring protein H-NS Pnap_4730 11 COG2916 Hns, DNA-binding protein H-NS General function prediction only 121583404 Common - transposase, IS4 family protein Pnap_4677 59 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583377 Common - IS1477 transposase Pnap_4649 69 None None None 121583432 Common - transposase IS66 Pnap_4709 60 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583372 Common - stress protein Pnap_4644 25 COG2310 TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Signal transduction mechanisms 121583360 Common - hemerythrin-like metal-binding protein Pnap_4628 19 COG2703 COG2703, Hemerythrin Inorganic ion transport and metabolism 121583365 Common - helix-turn-helix domain protein Pnap_4634 16 COG2944 COG2944, Predicted transcriptional regulator Transcription 121583358 Common - 4,5-dihydroxyphthalate decarboxylase Pnap_4626 10 COG4521 TauA, ABC-type taurine transport system, periplasmic component Inorganic ion transport and metabolism 121583475 Common - protein of unknown function DUF1458 Pnap_4753 34 COG3360 COG3360, Uncharacterized conserved protein Function unknown 121583453 Common - RNP-1 like RNA-binding protein Pnap_4731 66 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 121583476 Common - putative transcriptional regulator, GntR family Pnap_4754 183 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 121583397 Nonpathogen - hypothetical protein Pnap_4670 1 None None None 121583375 Common - transposase, IS4 family protein Pnap_4647 30 None None None 121583412 Common - TniB family protein Pnap_4686 32 None None None 121583370 Common - transposase IS116/IS110/IS902 family protein Pnap_4642 68 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583381 Common - protein of unknown function DUF475 Pnap_4653 40 COG2899 COG2899, Uncharacterized protein conserved in bacteria Function unknown 121583402 Common - hypothetical protein Pnap_4675 4 None None None 121583411 Common - hypothetical protein Pnap_4685 10 COG2945 COG2945, Predicted hydrolase of the alpha/beta superfamily General function prediction only 121583460 Common - protein of unknown function DUF6, transmembrane Pnap_4738 59 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 121583463 Common - putative transposase Pnap_4741 9 None None None 121583437 Nonpathogen - hypothetical protein Pnap_4715 1 None None None 121583348 Common - Uncharacterized protein UPF0065 Pnap_4615 68 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 121583367 Common - transposase IS66 Pnap_4638 34 None None None 121583448 Common - hypothetical protein Pnap_4726 7 COG4461 LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein Function unknown 121583423 Nonpathogen - hypothetical protein Pnap_4697 1 None None None 121583440 Common - UspA domain protein Pnap_4718 52 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 121583356 Common - ferredoxin Pnap_4624 109 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 121583434 Common - transposase IS116/IS110/IS902 family protein Pnap_4711 81 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583478 Common - putative transcriptional regulator, AsnC family Pnap_4758 121 COG1522 Lrp, Transcriptional regulators Transcription 121583380 Common - hypothetical protein Pnap_4652 6 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 121583458 Common - hypothetical protein Pnap_4736 8 None None None 121583467 Common - inner-membrane translocator Pnap_4745 141 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 121583427 Common - Recombinase Pnap_4704 47 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 121583439 Common - hypothetical protein Pnap_4717 17 COG5486 COG5486, Predicted metal-binding integral membrane protein Function unknown 121583408 Nonpathogen - hypothetical protein Pnap_4682 1 None None None 121583346 Common - transcriptional regulator, LysR family Pnap_4613 92 COG0583 LysR, Transcriptional regulator Transcription 121583369 Common - transposase IS66 Pnap_4641 60 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583383 Common - stress protein Pnap_4655 30 COG2310 TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Signal transduction mechanisms 121583465 Common - Nitrilase Pnap_4743 72 COG0388 COG0388, Predicted amidohydrolase General function prediction only 121583419 Common - Cobyrinic acid a,c-diamide synthase Pnap_4693 205 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 121583363 Common - nicotinate-nucleotide pyrophosphorylase Pnap_4632 205 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 121583364 Common - hypothetical protein Pnap_4633 13 None None None 121583446 Common - transposase Pnap_4724 38 None None None 121583385 Common - protein of unknown function DUF201 Pnap_4658 23 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 121583349 Common - Amidase Pnap_4617 220 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 121583354 Common - transcriptional regulator, MarR family Pnap_4622 72 COG1846 MarR, Transcriptional regulators Transcription 121583406 Common - hypothetical protein Pnap_4680 7 None None None 121583457 Common - Integrase, catalytic region Pnap_4735 25 None None None 121583469 Common - ABC transporter related Pnap_4747 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 121583344 Common - Uncharacterized protein UPF0065 Pnap_4611 69 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 121583359 Common - Rieske (2Fe-2S) domain protein Pnap_4627 71 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 121583393 Common - von Willebrand factor, type A Pnap_4666 24 COG4245 TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain General function prediction only 121583373 Common - hypothetical protein Pnap_4645 18 None None None 121583425 Common - phospho-2-dehydro-3-deoxyheptonate aldolase Pnap_4700 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 121583396 Common - von Willebrand factor, type A Pnap_4669 24 COG4245 TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain General function prediction only 121583362 Common - transposase, IS4 family protein Pnap_4630 12 None None None 121583429 Common - IS66 Orf2 family protein Pnap_4706 36 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583352 Common - hypothetical protein Pnap_4620 13 None None None 121583473 Common - hypothetical protein Pnap_4751 7 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583431 Common - IS66 Orf2 family protein Pnap_4708 25 None None None 121583405 Common - hypothetical protein Pnap_4679 4 None None None 121583455 Common - Glutathione S-transferase, C-terminal domain Pnap_4733 108 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 121583387 Common - hypothetical protein Pnap_4660 16 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 121583445 Nonpathogen - transposase Pnap_4723 3 None None None 121583414 Common - Integrase, catalytic region Pnap_4688 57 None None None 121583391 Common - serine/threonine protein kinase Pnap_4664 10 COG4248 COG4248, Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains General function prediction only 121583390 Common - stress protein Pnap_4663 25 COG4110 COG4110, Uncharacterized protein involved in stress response General function prediction only 121583417 Common - phage integrase family protein Pnap_4691 137 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 121583401 Common - Curli production assembly/transport component CsgG Pnap_4674 31 COG1462 CsgG, Uncharacterized protein involved in formation of curli polymers Cell envelope biogenesis, outer membrane 121583470 Common - ABC transporter related Pnap_4748 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 121583371 Common - hypothetical protein Pnap_4643 9 None None None