Polaromonas naphthalenivorans CJ2 plasmid pPNAP02, complete sequence NC_008758 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 121583066 Nonpathogen - hypothetical protein Pnap_4492 5 None None None 121583061 Common - Heavy metal transport/detoxification protein Pnap_4487 56 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 121583034 Common - hypothetical protein Pnap_4457 4 None None None 121583114 Common - Isoprenylcysteine carboxyl methyltransferase Pnap_4540 30 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 121583098 Common - copper-translocating P-type ATPase Pnap_4524 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 121583028 Common - hypothetical protein Pnap_4451 10 None None None 121583176 Nonpathogen - hypothetical protein Pnap_4607 1 None None None 121583151 Nonpathogen - hypothetical protein Pnap_4582 3 None None None 121583148 Common - RNP-1 like RNA-binding protein Pnap_4579 66 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 121583077 Common - hypothetical protein Pnap_4503 22 COG5368 COG5368, Uncharacterized protein conserved in bacteria Function unknown 121583102 Common - major facilitator superfamily MFS_1 Pnap_4528 10 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 121583139 Common - hypothetical protein Pnap_4568 72 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 121583123 Common - hypothetical protein Pnap_4550 28 COG5569 COG5569, Uncharacterized conserved protein Function unknown 121583120 Common - heavy metal translocating P-type ATPase Pnap_4547 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 121583052 Nonpathogen - hypothetical protein Pnap_4476 1 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 121583080 Common - transposase Pnap_4506 15 None None None 121583045 Common - parB-like partition proteins Pnap_4468 181 COG1475 Spo0J, Predicted transcriptional regulators Transcription 121583140 Common - heavy metal efflux pump, CzcA family Pnap_4569 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 121583166 Common - transposase IS3/IS911 family protein Pnap_4597 4 None None None 121583032 Common - hypothetical protein Pnap_4455 22 COG5293 COG5293, Uncharacterized protein conserved in bacteria Function unknown 121583091 Common - Bilirubin oxidase Pnap_4517 125 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 121583026 Common - IS66 Orf2 family protein Pnap_4448 32 None None None 121583150 Common - Glutathione S-transferase, C-terminal domain Pnap_4581 108 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 121583157 Common - cell divisionFtsK/SpoIIIE Pnap_4588 197 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 121583075 Common - 6-phosphogluconate dehydrogenase-like protein Pnap_4501 181 COG1023 Gnd, Predicted 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 121583039 Common - hypothetical protein Pnap_4462 16 None None None 121583173 Nonpathogen - hypothetical protein Pnap_4604 1 None None None 121583048 Common - parB-like partition proteins Pnap_4471 113 COG1475 Spo0J, Predicted transcriptional regulators Transcription 121583041 Nonpathogen - hypothetical protein Pnap_4464 1 None None None 121583112 Common - hypothetical protein Pnap_4538 2 None None None 121583059 Common - transposase IS116/IS110/IS902 family protein Pnap_4485 87 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583107 Common - IS66 Orf2 family protein Pnap_4533 52 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583093 Common - Isoprenylcysteine carboxyl methyltransferase Pnap_4519 30 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 121583057 Nonpathogen - hypothetical protein Pnap_4483 3 None None None 121583125 Common - multicopper oxidase, type 3 Pnap_4552 129 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 121583137 Common - outer membrane efflux protein Pnap_4566 16 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 121583146 Nonpathogen - hypothetical protein Pnap_4577 3 None None None 121583070 Common - phosphoglucomutase Pnap_4496 203 COG0033 Pgm, Phosphoglucomutase Carbohydrate transport and metabolism 121583082 Nonpathogen - hypothetical protein Pnap_4508 5 None None None 121583043 Nonpathogen - hypothetical protein Pnap_4466 1 None None None 121583109 Common - protein of unknown function DUF305 Pnap_4535 28 COG3544 COG3544, Uncharacterized protein conserved in bacteria Function unknown 121583056 Common - transposase family protein Pnap_4482 13 None None None 121583118 Common - protein of unknown function DUF477 Pnap_4545 88 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 121583071 Common - putative phosphoketolase Pnap_4497 65 COG3957 COG3957, Phosphoketolase Carbohydrate transport and metabolism 121583171 Common - Radical SAM domain protein Pnap_4602 65 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 121583024 Nonpathogen - hypothetical protein Pnap_4446 1 None None None 121583155 Nonpathogen - hypothetical protein Pnap_4586 1 None None None 121583038 Nonpathogen - hypothetical protein Pnap_4461 1 None None None 121583064 Nonpathogen - hypothetical protein Pnap_4490 1 None None None 121583105 Nonpathogen - hypothetical protein Pnap_4531 4 None None None 121583087 Common - heavy metal efflux pump, CzcA family Pnap_4513 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 121583095 Nonpathogen - hypothetical protein Pnap_4521 1 COG3462 COG3462, Predicted membrane protein Function unknown 121583025 Common - transposase IS3/IS911 family protein Pnap_4447 26 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583134 Common - protein of unknown function DUF305 Pnap_4562 28 COG3544 COG3544, Uncharacterized protein conserved in bacteria Function unknown 121583085 Common - outer membrane efflux protein Pnap_4511 59 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 121583163 Common - hypothetical protein Pnap_4594 7 None None None 121583144 Common - hypothetical protein Pnap_4573 23 COG2253 COG2253, Uncharacterized conserved protein Function unknown 121583126 Common - putative copper resistance-related lipoprotein Pnap_4553 20 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 121583128 Nonpathogen - hypothetical protein Pnap_4555 1 None None None 121583170 Common - hypothetical protein Pnap_4601 26 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583177 Common - transposase IS116/IS110/IS902 family protein Pnap_4608 86 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583152 Common - hypothetical protein Pnap_4583 10 None None None 121583116 Nonpathogen - hypothetical protein Pnap_4542 12 None None None 121583159 Nonpathogen - hypothetical protein Pnap_4590 3 None None None 121583036 Nonpathogen - hypothetical protein Pnap_4459 1 None None None 121583062 Common - protein of unknown function DUF344 Pnap_4488 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 121583161 Common - hypothetical protein Pnap_4592 5 None None None 121583103 Common - heavy metal translocating P-type ATPase Pnap_4529 18 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 121583022 Nonpathogen - hypothetical protein Pnap_4444 3 None None None 121583029 Common - addiction module antitoxin, RelB/DinJ family Pnap_4452 31 COG3077 RelB, DNA-damage-inducible protein J DNA replication, recombination, and repair 121583079 Common - transposase Pnap_4505 37 None None None 121583046 Common - Rad3-related DNA helicases-like protein Pnap_4469 116 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 121583132 Nonpathogen - hypothetical protein Pnap_4559 1 None None None 121583069 Common - transaldolase Pnap_4495 61 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 121583054 Common - putative transposase Pnap_4480 15 None None None 121583050 Common - phage integrase family protein Pnap_4473 155 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 121583089 Common - hypothetical protein Pnap_4515 8 None None None 121583060 Nonpathogen - hypothetical protein Pnap_4486 2 None None None 121583097 Common - protein of unknown function DUF344 Pnap_4523 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 121583149 Common - Glutathione S-transferase, C-terminal domain Pnap_4580 97 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 121583100 Common - acetate kinase Pnap_4526 161 COG0282 ackA, Acetate kinase Energy production and conversion 121583121 Common - 40-residue YVTN family beta-propeller repeat protein Pnap_4548 92 COG3391 COG3391, Uncharacterized conserved protein Function unknown 121583154 Common - phosphoadenosine phosphosulfate reductase Pnap_4585 26 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 121583142 Nonpathogen - hypothetical protein Pnap_4571 1 None None None 121583076 Common - hypothetical protein Pnap_4502 8 COG3892 COG3892, Uncharacterized protein conserved in bacteria Function unknown 121583124 Common - blue (type 1) copper domain protein Pnap_4551 29 COG4454 COG4454, Uncharacterized copper-binding protein Inorganic ion transport and metabolism 121583147 Common - histone family protein nucleoid-structuring protein H-NS Pnap_4578 11 COG2916 Hns, DNA-binding protein H-NS General function prediction only 121583101 Common - hypothetical protein Pnap_4527 21 COG3243 PhaC, Poly(3-hydroxyalkanoate) synthetase Lipid metabolism 121583167 Nonpathogen - hypothetical protein Pnap_4598 1 None None None 121583110 Nonpathogen - hypothetical protein Pnap_4536 2 None None None 121583053 Common - ATPase, P-type (transporting), HAD superfamily, subfamily IC Pnap_4479 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 121583083 Common - hypothetical protein Pnap_4509 34 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 121583115 Common - Heavy metal transport/detoxification protein Pnap_4541 54 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 121583138 Nonpathogen - hypothetical protein Pnap_4567 9 None None None 121583044 Nonpathogen - hypothetical protein Pnap_4467 1 None None None 121583074 Common - hypothetical protein Pnap_4500 3 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 121583099 Common - short-chain dehydrogenase/reductase SDR Pnap_4525 221 COG0623 FabI, Enoyl- acyl-carrier-protein 121583033 Nonpathogen - hypothetical protein Pnap_4456 1 None None None 121583113 Common - hypothetical protein Pnap_4539 9 None None None 121583174 Nonpathogen - Nucleotide binding protein, PINc Pnap_4605 4 COG1875 COG1875, Predicted ATPase related to phosphate starvation-inducible protein PhoH Signal transduction mechanisms 121583021 Common - hypothetical protein Pnap_4443 8 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 121583175 Common - Superfamily I DNA and RNA helicases and helicase subunits-like protein Pnap_4606 45 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 121583067 Common - hypothetical protein Pnap_4493 17 None None None 121583108 Common - transposase IS66 Pnap_4534 64 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583145 Common - hypothetical protein Pnap_4574 29 COG5340 COG5340, Predicted transcriptional regulator Transcription 121583030 Common - hypothetical protein Pnap_4453 11 None None None 121583136 Common - hypothetical protein Pnap_4564 17 None None None 121583042 Nonpathogen - hypothetical protein Pnap_4465 1 None None None 121583165 Common - transposase Pnap_4596 22 None None None 121583027 Common - transposase IS66 Pnap_4449 62 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583031 Nonpathogen - hypothetical protein Pnap_4454 2 None None None 121583072 Common - acetate kinase Pnap_4498 161 COG0282 ackA, Acetate kinase Energy production and conversion 121583158 Nonpathogen - hypothetical protein Pnap_4589 3 None None None 121583172 Common - ATPase AAA-2 domain protein Pnap_4603 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 121583049 Common - Cobyrinic acid a,c-diamide synthase Pnap_4472 157 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 121583058 Common - transposase, IS4 family protein Pnap_4484 18 None None None 121583111 Nonpathogen - hypothetical protein Pnap_4537 5 None None None 121583020 Common - hypothetical protein Pnap_4442 5 None None None 121583037 Nonpathogen - hypothetical protein Pnap_4460 1 None None None 121583119 Common - protein of unknown function DUF477 Pnap_4546 52 COG3762 COG3762, Predicted membrane protein Function unknown 121583164 Nonpathogen - hypothetical protein Pnap_4595 1 None None None 121583086 Common - efflux transporter, RND family, MFP subunit Pnap_4512 168 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 121583018 Nonpathogen - hypothetical protein Pnap_4440 1 None None None 121583084 Nonpathogen - hypothetical protein Pnap_4510 1 None None None 121583106 Common - transposase IS3/IS911 family protein Pnap_4532 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 121583040 Nonpathogen - hypothetical protein Pnap_4463 1 None None None 121583047 Common - TrfA Pnap_4470 17 None None None 121583133 Common - hypothetical protein Pnap_4560 26 COG5569 COG5569, Uncharacterized conserved protein Function unknown 121583073 Common - transketolase Pnap_4499 221 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 121583143 Nonpathogen - phage integrase Pnap_4572 3 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 121583129 Nonpathogen - hypothetical protein Pnap_4556 6 None None None 121583127 Common - hypothetical protein Pnap_4554 4 None None None 121583130 Common - heavy metal sensor signal transduction histidine kinase Pnap_4557 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 121583178 Nonpathogen - hypothetical protein Pnap_4610 1 None None None 121583090 Common - hypothetical protein Pnap_4516 2 None None None 121583019 Common - hypothetical protein Pnap_4441 6 COG5245 DYN1, Dynein, heavy chain Cytoskeleton 121583117 Common - LemA family protein Pnap_4544 131 COG1704 LemA, Uncharacterized conserved protein Function unknown 121583092 Common - hypothetical protein Pnap_4518 6 None None None 121583169 Nonpathogen - hypothetical protein Pnap_4600 1 None None None 121583156 Common - histidine kinase Pnap_4587 165 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 121583135 Common - FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pnap_4563 191 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 121583065 Common - copper-translocating P-type ATPase Pnap_4491 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 121583078 Nonpathogen - hypothetical protein Pnap_4504 2 None None None 121583131 Common - two component heavy metal response transcriptional regulator, winged helix family Pnap_4558 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 121583122 Common - hypothetical protein Pnap_4549 5 None None None 121583162 Nonpathogen - prevent-host-death protein Pnap_4593 1 None None None 121583068 Common - asparagine synthase (glutamine-hydrolyzing) Pnap_4494 155 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 121583023 Nonpathogen - hypothetical protein Pnap_4445 1 None None None 121583051 Common - histidine kinase Pnap_4475 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 121583088 Nonpathogen - hypothetical protein Pnap_4514 2 None None None 121583055 Common - hypothetical protein Pnap_4481 29 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 121583096 Common - Heavy metal transport/detoxification protein Pnap_4522 49 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 121583141 Nonpathogen - hypothetical protein Pnap_4570 10 None None None 121583081 Common - phospholipase D/Transphosphatidylase Pnap_4507 146 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 121583153 Common - putative ATP-binding protein Pnap_4584 10 None None None 121583160 Nonpathogen - hypothetical protein Pnap_4591 1 None None None 121583104 Common - creatininase Pnap_4530 5 COG1402 COG1402, Uncharacterized protein, putative amidase General function prediction only 121583063 Nonpathogen - Heavy metal transport/detoxification protein Pnap_4489 4 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 121583168 Common - AAA ATPase Pnap_4599 180 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 121583094 Common - Heavy metal transport/detoxification protein Pnap_4520 76 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 121583035 Nonpathogen - hypothetical protein Pnap_4458 2 None None None