Paracoccus denitrificans PD1222 plasmid 1, complete sequence NC_008688 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 119387681 Common - binding-protein-dependent transport systems inner membrane component Pden_4959 216 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 119387537 Common - hypothetical protein Pden_4814 12 None None None 119387359 Common - Leucyl aminopeptidase Pden_4634 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 119387249 Common - putative transcriptional regulator, MerR family Pden_4523 137 COG0789 SoxR, Predicted transcriptional regulators Transcription 119387665 Common - extracellular solute-binding protein, family 1 Pden_4943 83 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 119387567 Common - extracellular solute-binding protein, family 1 Pden_4845 81 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 119387288 Common - transcriptional regulator, LysR family Pden_4563 164 COG0583 LysR, Transcriptional regulator Transcription 119387281 Common - DNA polymerase III, epsilon subunit Pden_4556 196 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 119387560 Common - hypothetical protein Pden_4838 27 None None None 119387483 Common - dihydrolipoamide dehydrogenase Pden_4760 242 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 119387617 Common - BFD domain protein (2Fe-2S)-binding domain protein Pden_4895 29 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 119387270 Common - TRAP C4-dicarboxylate transport system permease DctM subunit Pden_4545 122 COG4664 FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large permease component Secondary metabolites biosynthesis, transport, and catabolism 119387434 Common - cell division topological specificity factor MinE Pden_4711 92 COG0851 MinE, Septum formation topological specificity factor Cell division and chromosome partitioning 119387421 Common - hypothetical protein Pden_4698 41 None None None 119387350 Common - Glu/Leu/Phe/Val dehydrogenase, dimerisation region Pden_4625 132 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 119387377 Common aphA acid phosphatase/phosphotransferase Pden_4654 12 COG3700 AphA, Acid phosphatase (class B) General function prediction only 119387380 Common - two component, sigma54 specific, transcriptional regulator, Fis family Pden_4657 218 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 119387412 Common - hypothetical protein Pden_4689 15 None None None 119387699 Nonpathogen - hypothetical protein Pden_4977 1 None None None 119387511 Nonpathogen - hypothetical protein Pden_4788 2 None None None 119387583 Common - ABC transporter related Pden_4861 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 119387390 Common - extracellular solute-binding protein, family 3 Pden_4667 150 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 119387826 Common - Surfeit locus 1 family protein Pden_5104 45 COG3346 COG3346, Uncharacterized conserved protein Function unknown 119387579 Common - TRAP dicarboxylate transporter, DctM subunit Pden_4857 135 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 119387261 Common - TonB-dependent siderophore receptor Pden_4535 98 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 119387446 Common - periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family Pden_4723 46 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 119387742 Common - 3-oxoacid CoA-transferase, A subunit Pden_5020 102 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 119387747 Common - glycerol-3-phosphate cytidylyltransferase Pden_5025 90 COG0615 TagD, Cytidylyltransferase Cell envelope biogenesis, outer membrane / Lipid metabolism 119387532 Common - phenylacetate-CoA oxygenase, PaaH subunit Pden_4809 37 COG3460 COG3460, Uncharacterized enzyme of phenylacetate metabolism Secondary metabolites biosynthesis, transport, and catabolism 119387467 Nonpathogen - hypothetical protein Pden_4744 2 None None None 119387749 Common - glycosyl transferase, group 1 Pden_5027 192 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 119387632 Common - transcriptional regulator, AraC family Pden_4910 68 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 119387852 Common - putative FecR Pden_5130 43 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 119387494 Common - ABC ribose transporter, periplasmic solute-binding protein Pden_4771 98 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 119387781 Common - PfkB domain protein Pden_5059 85 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 119387320 Common - carbohydrate kinase, FGGY Pden_4595 59 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 119387313 Common - putative molecular chaperone small heat shock protein, HSP20 family Pden_4588 37 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 119387581 Common - proline racemase Pden_4859 47 COG3938 COG3938, Proline racemase Amino acid transport and metabolism 119387422 Common - cytochrome B561 Pden_4699 43 COG3658 COG3658, Cytochrome b Energy production and conversion 119387296 Common - NAD-dependent epimerase/dehydratase Pden_4571 89 COG2910 COG2910, Putative NADH-flavin reductase General function prediction only 119387705 Common - branched-chain alpha-keto acid dehydrogenase subunit E2 Pden_4983 198 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 119387721 Common - inner-membrane translocator Pden_4999 150 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 119387845 Nonpathogen - hypothetical protein Pden_5123 1 None None None 119387719 Common - ABC transporter related Pden_4997 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 119387454 Nonpathogen - methylamine utilisation MauE Pden_4731 1 None None None 119387277 Common - Na+/solute symporter Pden_4552 166 COG4147 DhlC, Predicted symporter General function prediction only 119387750 Common - hypothetical protein Pden_5028 9 None None None 119387513 Common - 5-formyltetrahydrofolate cyclo-ligase Pden_4790 51 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 119387683 Common - extracellular solute-binding protein, family 5 Pden_4961 176 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 119387707 Common - Pyruvate dehydrogenase (acetyl-transferring) Pden_4985 156 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 119387730 Common - copper resistance protein CopC Pden_5008 31 COG1276 PcoD, Putative copper export protein Inorganic ion transport and metabolism 119387712 Common - ErfK/YbiS/YcfS/YnhG family protein Pden_4990 61 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 119387405 Common - putative PAS/PAC sensor protein Pden_4682 62 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 119387595 Common - putative spermidine/putrescine transport system substrate-binding protein Pden_4873 47 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 119387847 Common - putative monooxygenase protein Pden_5125 68 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 119387263 Nonpathogen - hypothetical protein Pden_4538 1 None None None 119387635 Common - ABC transporter related Pden_4913 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 119387828 Common - cytochrome c oxidase, subunit III Pden_5106 159 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 119387565 Common - binding-protein-dependent transport systems inner membrane component Pden_4843 159 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 119387654 Common - short-chain dehydrogenase/reductase SDR Pden_4932 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 119387286 Common - Glycerate kinase Pden_4561 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 119387736 Common - Acyl-CoA dehydrogenase, type 2, C-terminal domain Pden_5014 148 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 119387605 Common - ABC transporter related Pden_4883 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 119387764 Nonpathogen - hypothetical protein Pden_5042 1 None None None 119387505 Common - phosphonate metabolism PhnG Pden_4782 31 COG3624 PhnG, Uncharacterized enzyme of phosphonate metabolism Inorganic ion transport and metabolism 119387373 Common - binding-protein-dependent transport systems inner membrane component Pden_4650 227 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 119387833 Nonpathogen - hypothetical protein Pden_5111 1 None None None 119387543 Common - acyl-CoA synthetase Pden_4820 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 119387365 Nonpathogen - hypothetical protein Pden_4642 8 None None None 119387478 Common - putative carbohydrate binding Pden_4755 45 COG3459 COG3459, Cellobiose phosphorylase Carbohydrate transport and metabolism 119387838 Common - putative agmatinase Pden_5116 160 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 119387541 Common - regulatory proteins, IclR Pden_4818 24 COG1414 IclR, Transcriptional regulator Transcription 119387362 Common - ornithine cyclodeaminase Pden_4637 85 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 119387622 Common - hypothetical protein Pden_4900 20 COG4950 COG4950, Uncharacterized protein conserved in bacteria Function unknown 119387522 Common - enoyl-CoA hydratase Pden_4799 174 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 119387301 Common - hypothetical protein Pden_4576 20 None None None 119387300 Common - transcriptional regulator, LysR family Pden_4575 173 COG0583 LysR, Transcriptional regulator Transcription 119387569 Common - Tagatose-6-phosphate kinase Pden_4847 32 COG4573 GatZ, Predicted tagatose 6-phosphate kinase Carbohydrate transport and metabolism 119387663 Common - Betaine-aldehyde dehydrogenase Pden_4941 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 119387783 Common - mannonate dehydratase Pden_5061 57 COG1312 UxuA, D-mannonate dehydratase Carbohydrate transport and metabolism 119387597 Common - binding-protein-dependent transport systems inner membrane component Pden_4875 218 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 119387283 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Pden_4558 136 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 119387773 Common - polysaccharide deacetylase Pden_5051 99 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 119387379 Common - integral membrane sensor signal transduction histidine kinase Pden_4656 201 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 119387331 Common - Radical SAM domain protein Pden_4606 55 COG4277 COG4277, Predicted DNA-binding protein with the Helix-hairpin-helix motif General function prediction only 119387557 Common - major facilitator superfamily MFS_1 Pden_4835 112 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 119387539 Common - TRAP C4-dicarboxylate transport system permease DctM subunit Pden_4816 125 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 119387823 Nonpathogen - hypothetical protein Pden_5101 2 None None None 119387803 Common - extracellular solute-binding protein, family 3 Pden_5081 177 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 119387473 Common - transcriptional regulator, LysR family Pden_4750 159 COG0583 LysR, Transcriptional regulator Transcription 119387501 Common phnK phosphonates transport ATP-binding protein Pden_4778 249 COG4107 PhnK, ABC-type phosphonate transport system, ATPase component Inorganic ion transport and metabolism 119387322 Common - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pden_4597 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 119387311 Common groES co-chaperonin GroES Pden_4586 215 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 119387247 Nonpathogen - hypothetical protein Pden_4521 3 None None None 119387630 Common - Sarcosine oxidase, delta subunit, heterotetrameric Pden_4908 26 COG4311 SoxD, Sarcosine oxidase delta subunit Amino acid transport and metabolism 119387424 Common - regulatory protein, ArsR Pden_4701 70 COG0640 ArsR, Predicted transcriptional regulators Transcription 119387460 Common - MauM/NapG family ferredoxin-type protein Pden_4737 61 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 119387574 Common - peptidase C14, caspase catalytic subunit p20 Pden_4852 53 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 119387796 Common - binding-protein-dependent transport systems inner membrane component Pden_5074 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 119387527 Common - bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase Pden_4804 219 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 119387585 Common - polar amino acid ABC transporter, inner membrane subunit Pden_4863 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 119387697 Common - GCN5-related N-acetyltransferase Pden_4975 35 None None None 119387700 Common - hypothetical protein Pden_4978 2 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 119387382 Common - binding-protein-dependent transport systems inner membrane component Pden_4659 231 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 119387639 Common - transcriptional regulator, XRE family Pden_4917 99 COG1396 HipB, Predicted transcriptional regulators Transcription 119387518 Common - inner-membrane translocator Pden_4795 153 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 119387602 Common - transcriptional regulator, LysR family Pden_4880 181 COG0583 LysR, Transcriptional regulator Transcription 119387745 Common - NAD-dependent epimerase/dehydratase Pden_5023 232 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 119387275 Common - acetate--CoA ligase Pden_4550 212 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 119387618 Common - oxidoreductase FAD/NAD(P)-binding domain protein Pden_4896 126 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 119387756 Common - initiator RepB protein Pden_5034 18 COG5527 COG5527, Protein involved in initiation of plasmid replication DNA replication, recombination, and repair 119387562 Common - Alcohol dehydrogenase GroES domain protein Pden_4840 207 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 119387417 Common - FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pden_4694 91 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 119387399 Common - FMN-dependent alpha-hydroxy acid dehydrogenase Pden_4676 115 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 119387448 Common - hypothetical protein Pden_4725 35 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 119387465 Common - hypothetical protein Pden_4742 27 COG3915 COG3915, Uncharacterized protein conserved in bacteria Function unknown 119387854 Common - efflux transporter, RND family, MFP subunit Pden_5132 139 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 119387678 Common - FAD dependent oxidoreductase Pden_4956 103 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 119387344 Common - TRAP dicarboxylate transporter- DctP subunit Pden_4619 66 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 119387758 Common - parB-like partition proteins Pden_5036 103 COG1475 Spo0J, Predicted transcriptional regulators Transcription 119387551 Common - ABC transporter related Pden_4828 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 119387817 Common - ABC transporter substrate binding protei Pden_5095 131 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 119387375 Common - Inositol-phosphate phosphatase Pden_4652 193 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 119387403 Common - MaoC domain protein dehydratase Pden_4680 58 COG2030 MaoC, Acyl dehydratase Lipid metabolism 119387644 Common - hypothetical protein Pden_4922 8 COG0439 AccC, Biotin carboxylase Lipid metabolism 119387728 Common - aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein Pden_5006 85 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 119387437 Common - phosphoribosyltransferase Pden_4714 72 COG1926 COG1926, Predicted phosphoribosyltransferases General function prediction only 119387671 Common - protein of unknown function DUF72 Pden_4949 87 COG1801 COG1801, Uncharacterized conserved protein Function unknown 119387659 Common - hypothetical protein Pden_4937 14 None None None 119387656 Common - BFD domain protein (2Fe-2S)-binding domain protein Pden_4934 46 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 119387337 Common - Peptidoglycan-binding domain 1 protein Pden_4612 19 COG3409 COG3409, Putative peptidoglycan-binding domain-containing protein Cell envelope biogenesis, outer membrane 119387414 Common - CDP-diacylglycerol--serine O-phosphatidyltransferase Pden_4691 142 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 119387351 Common - protein of unknown function DUF161 Pden_4626 33 COG1284 COG1284, Uncharacterized conserved protein Function unknown 119387620 Nonpathogen - hypothetical protein Pden_4898 1 None None None 119387629 Common - sarcosine oxidase, alpha subunit family Pden_4907 174 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 119387268 Common - N-formylglutamate amidohydrolase Pden_4543 38 COG3931 COG3931, Predicted N-formylglutamate amidohydrolase Amino acid transport and metabolism 119387245 Common - Activator of Hsp90 ATPase 1 family protein Pden_4519 16 COG3832 COG3832, Uncharacterized conserved protein Function unknown 119387685 Common - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pden_4963 229 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 119387801 Common - polar amino acid ABC transporter, inner membrane subunit Pden_5079 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 119387545 Common - short-chain dehydrogenase/reductase SDR Pden_4822 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 119387775 Common - short-chain dehydrogenase/reductase SDR Pden_5053 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 119387503 Common - phosphonate metabolism Pden_4780 45 COG3626 PhnI, Uncharacterized enzyme of phosphonate metabolism Inorganic ion transport and metabolism 119387835 Common - response regulator receiver protein Pden_5113 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 119387572 Common - ABC transporter related Pden_4850 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 119387367 Common - putative transcriptional regulator, AsnC family Pden_4644 132 COG1522 Lrp, Transcriptional regulators Transcription 119387409 Common - ABC transporter related Pden_4686 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 119387793 Common - protein of unknown function DUF849 Pden_5071 62 COG3246 COG3246, Uncharacterized conserved protein Function unknown 119387257 Common - protein of unknown function DUF849 Pden_4531 61 COG3246 COG3246, Uncharacterized conserved protein Function unknown 119387476 Common - dihydrodipicolinate synthetase Pden_4753 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 119387355 Common - transcriptional regulator, TetR family Pden_4630 53 COG1309 AcrR, Transcriptional regulator Transcription 119387831 Common - major facilitator superfamily MFS_1 Pden_5109 125 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 119387840 Common - hypothetical protein Pden_5118 30 COG4529 COG4529, Uncharacterized protein conserved in bacteria Function unknown 119387441 Nonpathogen - hypothetical protein Pden_4718 1 None None None 119387762 Common - glycosyl transferase, group 1 Pden_5040 139 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 119387400 Common - putative hydroxylase Pden_4677 47 COG3128 PiuC, Uncharacterized iron-regulated protein Function unknown 119387813 Common - acyl-CoA dehydrogenase domain protein Pden_5091 158 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 119387307 Common - hypothetical protein Pden_4582 10 COG4891 COG4891, Uncharacterized conserved protein Function unknown 119387734 Common - ABC transporter substrate-binding protein Pden_5012 51 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 119387394 Common - Altronate dehydratase Pden_4671 73 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 119387516 Common - ABC transporter related Pden_4793 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 119387590 Common - transcriptional regulator, GntR family Pden_4868 120 COG1802 GntR, Transcriptional regulators Transcription 119387786 Common - TRAP dicarboxylate transporter, DctM subunit Pden_5064 122 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 119387463 Common - two component transcriptional regulator, LuxR family Pden_4740 180 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 119387552 Common - periplasmic binding protein Pden_4829 79 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 119387740 Common - Hydroxypyruvate isomerase Pden_5018 85 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 119387317 Common - uncharacterized peroxidase-related enzyme Pden_4592 61 COG2128 COG2128, Uncharacterized conserved protein Function unknown 119387743 Common - 3-oxoacid CoA-transferase, B subunit Pden_5021 92 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 119387327 Common - binding-protein-dependent transport systems inner membrane component Pden_4602 192 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 119387255 Common - Na+/solute symporter Pden_4529 138 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 119387299 Common - aldo/keto reductase Pden_4574 188 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 119387691 Common - succinic semialdehyde dehydrogenase Pden_4969 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 119387292 Common - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase Pden_4567 154 COG1049 AcnB, Aconitase B Energy production and conversion 119387757 Common - Cobyrinic acid a,c-diamide synthase Pden_5035 198 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 119387701 Common - GAF modulated sigma54 specific transcriptional regulator, Fis family Pden_4979 178 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 119387426 Common - protein of unknown function DUF395, YeeE/YedE Pden_4703 62 COG2391 COG2391, Predicted transporter component General function prediction only 119387529 Common - phenylacetate-CoA oxygenase/reductase, PaaK subunit Pden_4806 149 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 119387709 Common - RNA polymerase, sigma 54 subunit, RpoN Pden_4987 141 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 119387794 Common - extracellular solute-binding protein, family 5 Pden_5072 196 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 119387533 Common - phenylacetate-CoA oxygenase, PaaG subunit Pden_4810 46 COG3396 COG3396, Uncharacterized conserved protein Function unknown 119387725 Common - Cupin 2, conserved barrel domain protein Pden_5003 30 COG4101 COG4101, Predicted mannose-6-phosphate isomerase Carbohydrate transport and metabolism 119387555 Common - putative transcriptional regulator, GntR family Pden_4833 205 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 119387806 Common - PfkB domain protein Pden_5084 72 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 119387821 Common - ABC transporter related Pden_5099 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 119387563 Common - sorbitol dehydrogenase Pden_4841 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 119387346 Common - TRAP dicarboxylate transporter, DctM subunit Pden_4621 125 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 119387716 Common - Extracellular ligand-binding receptor Pden_4994 91 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 119387609 Common - binding-protein-dependent transport systems inner membrane component Pden_4887 160 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 119387825 Common - Poly-beta-hydroxybutyrate polymerase domain protein Pden_5103 75 COG3243 PhaC, Poly(3-hydroxyalkanoate) synthetase Lipid metabolism 119387459 Common - Di-haem cytochrome c peroxidase Pden_4736 92 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 119387669 Nonpathogen - protein of unknown function DUF1127 Pden_4947 6 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 119387695 Common - 5-oxoprolinase (ATP-hydrolyzing) Pden_4973 92 COG0146 HyuB, N-methylhydantoinase B/acetone carboxylase, alpha subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 119387507 Common - phosphonate ABC transporter, inner membrane subunit Pden_4784 87 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 119387600 Common - pyruvate carboxyltransferase Pden_4878 130 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 119387486 Common - two component, sigma54 specific, transcriptional regulator, Fis family Pden_4763 200 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 119387778 Common - ABC transporter related Pden_5056 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 119387576 Common - protein of unknown function DUF521 Pden_4854 39 COG1679 COG1679, Uncharacterized conserved protein Function unknown 119387388 Common - aldehyde dehydrogenase Pden_4665 162 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 119387561 Common - HAD-superfamily hydrolase, subfamily IA, variant 3 Pden_4839 71 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 119387306 Common - transcriptional regulator, LysR family Pden_4581 177 COG0583 LysR, Transcriptional regulator Transcription 119387418 Nonpathogen - hypothetical protein Pden_4695 5 None None None 119387398 Common - transcriptional regulator, RpiR family Pden_4675 81 COG1737 RpiR, Transcriptional regulators Transcription 119387443 Common - NapD family protein Pden_4720 9 COG3062 NapD, Uncharacterized protein involved in formation of periplasmic nitrate reductase Inorganic ion transport and metabolism 119387768 Common - transcriptional regulator, MarR family Pden_5046 73 COG1846 MarR, Transcriptional regulators Transcription 119387509 Common - phosphonate ABC transporter, periplasmic phosphonate-binding protein Pden_4786 93 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 119387457 Common - amicyanin Pden_4734 30 COG3794 PetE, Plastocyanin Energy production and conversion 119387789 Common - transcriptional regulator, GntR family Pden_5067 140 COG1802 GntR, Transcriptional regulators Transcription 119387547 Common - phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I Pden_4824 221 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 119387430 Common - Uncharacterized protein related to arylsulfate sulfotransferase Pden_4707 29 COG4321 COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis General function prediction only 119387411 Common - YbaK/prolyl-tRNA synthetase associated region Pden_4688 47 COG2606 EbsC, Uncharacterized conserved protein Function unknown 119387815 Common - Endoribonuclease L-PSP Pden_5093 82 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 119387834 Common - integral membrane sensor signal transduction histidine kinase Pden_5112 221 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 119387612 Common - acyl-CoA dehydrogenase domain protein Pden_4890 161 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 119387646 Common - polar amino acid ABC transporter, inner membrane subunit Pden_4924 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 119387802 Common - polar amino acid ABC transporter, inner membrane subunit Pden_5080 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 119387752 Common - hypothetical protein Pden_5030 4 None None None 119387407 Common - 3-oxoacid CoA-transferase, B subunit Pden_4684 96 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 119387502 Common - phosphonate metabolism PhnJ Pden_4779 45 COG3627 PhnJ, Uncharacterized enzyme of phosphonate metabolism Inorganic ion transport and metabolism 119387731 Common - nuclear export factor GLE1 Pden_5009 19 COG4549 COG4549, Uncharacterized protein conserved in bacteria Function unknown 119387368 Common - transcriptional regulator, TetR family Pden_4645 53 COG1309 AcrR, Transcriptional regulator Transcription 119387649 Common - extracellular solute-binding protein, family 3 Pden_4927 164 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 119387759 Common - ABC transporter related Pden_5037 246 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 119387383 Common - ABC transporter related Pden_4660 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 119387660 Common - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Pden_4938 152 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 119387848 Common - binding-protein-dependent transport systems inner membrane component Pden_5126 192 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 119387267 Common - transcriptional regulator, RpiR family Pden_4542 76 COG1737 RpiR, Transcriptional regulators Transcription 119387310 Common groEL chaperonin GroEL Pden_4585 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 119387439 Common - Tripartite ATP-independent periplasmic transporter, DctQ component Pden_4716 32 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 119387673 Common - NADH:flavin oxidoreductase/NADH oxidase Pden_4951 176 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 119387425 Common - protein of unknown function DUF442 Pden_4702 37 COG3453 COG3453, Uncharacterized protein conserved in bacteria Function unknown 119387330 Common - hypothetical protein Pden_4605 119 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 119387450 Common - glucose sorbosone dehydrogenase Pden_4727 125 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 119387819 Common - inner-membrane translocator Pden_5097 146 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 119387339 Nonpathogen - hypothetical protein Pden_4614 2 None None None 119387599 Common - L-lactate dehydrogenase (cytochrome) Pden_4877 110 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 119387842 Nonpathogen - hypothetical protein Pden_5120 1 None None None 119387253 Common - transcriptional regulator, MarR family Pden_4527 5 COG1846 MarR, Transcriptional regulators Transcription 119387428 Nonpathogen - putative transmembrane protein Pden_4705 1 None None None 119387588 Common - Malate/L-lactate dehydrogenase Pden_4866 67 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 119387615 Common - transcriptional regulator, AraC family Pden_4893 146 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 119387530 Common - phenylacetate-CoA oxygenase, PaaJ subunit Pden_4807 62 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 119387792 Common - transcriptional regulator, AraC family Pden_5070 113 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 119387242 Common - 3-demethylubiquinone-9 3-methyltransferase Pden_4516 62 COG3865 COG3865, Uncharacterized protein conserved in bacteria Function unknown 119387453 Common - methylamine dehydrogenase heavy chain Pden_4730 11 COG3391 COG3391, Uncharacterized conserved protein Function unknown 119387477 Common - hypothetical protein Pden_4754 27 COG4222 COG4222, Uncharacterized protein conserved in bacteria Function unknown 119387314 Common - hypothetical protein Pden_4589 26 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 119387703 Common - alkylhydroperoxidase like protein, AhpD family Pden_4981 47 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 119387741 Common - beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family Pden_5019 118 COG1414 IclR, Transcriptional regulator Transcription 119387788 Common - TRAP dicarboxylate transporter, DctP subunit Pden_5066 99 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 119387514 Common - phospho-2-dehydro-3-heoxyheptonate aldolase Pden_4791 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 119387392 Common - polar amino acid ABC transporter, inner membrane subunit Pden_4669 171 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 119387461 Common - ferredoxin-type protein, NapH/MauN family Pden_4738 54 COG0348 NapH, Polyferredoxin Energy production and conversion 119387592 Common - transcriptional regulator, XRE family Pden_4870 88 COG1396 HipB, Predicted transcriptional regulators Transcription 119387640 Common - hypothetical protein Pden_4918 22 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 119387850 Common - ABC transporter related Pden_5128 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 119387315 Common - acyl-CoA synthetase Pden_4590 214 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 119387285 Nonpathogen - sodium/sulphate symporter Pden_4560 7 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 119387714 Common - Enoyl-CoA hydratase/isomerase Pden_4992 179 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 119387636 Common - inositol monophosphatase Pden_4914 197 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 119387294 Nonpathogen - hypothetical protein Pden_4569 1 None None None 119387693 Common - aldehyde dehydrogenase Pden_4971 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 119387492 Common - ABC transporter related Pden_4769 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 119387497 Common - phosphonate metabolism protein PhnM Pden_4774 52 COG3454 COG3454, Metal-dependent hydrolase involved in phosphonate metabolism Inorganic ion transport and metabolism 119387674 Common - transcriptional regulator, LysR family Pden_4952 131 COG0583 LysR, Transcriptional regulator Transcription 119387372 Common - extracellular solute-binding protein, family 1 Pden_4649 108 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 119387258 Nonpathogen - hypothetical protein Pden_4532 1 None None None 119387667 Common - binding-protein-dependent transport systems inner membrane component Pden_4945 221 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 119387335 Common - FAD dependent oxidoreductase Pden_4610 69 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 119387553 Common - transport system permease protein Pden_4830 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 119387808 Common - 3-hydroxybutyryl-CoA dehydrogenase Pden_5086 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 119387329 Common - regulatory proteins, IclR Pden_4604 124 COG1414 IclR, Transcriptional regulator Transcription 119387535 Common - PaaX domain protein Pden_4812 33 COG3327 PaaX, Phenylacetic acid-responsive transcriptional repressor Transcription 119387488 Common - sodium:dicarboxylate symporter Pden_4765 157 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 119387356 Common - major facilitator superfamily MFS_1 Pden_4631 24 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 119387798 Common - ABC transporter related Pden_5076 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 119387578 Common - TRAP dicarboxylate transporter- DctP subunit Pden_4856 94 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 119387524 Common - phenylacetate-CoA ligase Pden_4801 122 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 119387433 Common - glucose-methanol-choline oxidoreductase Pden_4710 89 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 119387386 Common - hypothetical protein Pden_4663 37 COG3970 COG3970, Fumarylacetoacetate (FAA) hydrolase family protein General function prediction only 119387723 Common - HupE/UreJ protein Pden_5001 10 COG2370 HupE, Hydrogenase/urease accessory protein Posttranslational modification, protein turnover, chaperones 119387445 Common - Nitrate reductase cytochrome c-type subunit (NapB) Pden_4722 41 COG3043 NapB, Nitrate reductase cytochrome c-type subunit Energy production and conversion 119387471 Common - glycine betaine/L-proline ABC transporter, ATPase subunit Pden_4748 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 119387766 Common - aldo/keto reductase Pden_5044 187 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 119387769 Common - extracellular solute-binding protein, family 1 Pden_5047 92 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 119387836 Common - DNA polymerase III, epsilon subunit Pden_5114 196 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 119387360 Common - peptidase M42 family protein Pden_4635 86 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 119387303 Common - Cupin 2, conserved barrel domain protein Pden_4578 40 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 119387370 Common - major facilitator superfamily MFS_1 Pden_4647 78 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 119387738 Common - Serine O-acetyltransferase Pden_5016 192 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 119387273 Common - aldehyde dehydrogenase Pden_4548 219 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 119387349 Common - putative transcriptional regulator, AsnC family Pden_4624 168 COG1522 Lrp, Transcriptional regulators Transcription 119387782 Common - Mannitol dehydrogenase, C-terminal domain Pden_5060 85 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 119387332 Common - Uracil-DNA glycosylase superfamily Pden_4607 154 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 119387491 Common - oxidoreductase domain protein Pden_4768 139 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 119387754 Common - cobalt transport protein Pden_5032 21 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 119387625 Common - binding-protein-dependent transport systems inner membrane component Pden_4903 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 119387500 Common - phosphonate C-P lyase system protein PhnL Pden_4777 249 COG4778 PhnL, ABC-type phosphonate transport system, ATPase component Inorganic ion transport and metabolism 119387804 Common - ABC transporter related Pden_5082 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 119387396 Common - band 7 protein Pden_4673 48 COG2268 COG2268, Uncharacterized protein conserved in bacteria Function unknown 119387653 Common - Alcohol dehydrogenase, zinc-binding domain protein Pden_4931 203 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 119387771 Common - binding-protein-dependent transport systems inner membrane component Pden_5049 189 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 119387265 Common - transposase IS66 Pden_4540 60 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 119387662 Common - histidine utilization repressor Pden_4940 129 COG2188 PhnF, Transcriptional regulators Transcription 119387340 Common - esterase, PHB depolymerase family Pden_4615 35 COG3509 LpqC, Poly(3-hydroxybutyrate) depolymerase Secondary metabolites biosynthesis, transport, and catabolism 119387827 Common - cytochrome C oxidase subunit IV Pden_5105 58 COG3125 CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 Energy production and conversion 119387621 Common - uncharacterized peroxidase-related enzyme Pden_4899 49 COG2128 COG2128, Uncharacterized conserved protein Function unknown 119387334 Common - phospholipase D/Transphosphatidylase Pden_4609 65 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 119387844 Common - putative transcriptional regulator, AsnC family Pden_5122 146 COG1522 Lrp, Transcriptional regulators Transcription 119387262 Common - hypothetical protein Pden_4537 28 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 119387829 Common - Cytochrome-c oxidase Pden_5107 167 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 119387276 Common - hypothetical protein Pden_4551 54 COG4327 COG4327, Predicted membrane protein Function unknown 119387634 Common - binding-protein-dependent transport systems inner membrane component Pden_4912 220 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 119387345 Common - hypothetical protein Pden_4620 23 COG4665 FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component Secondary metabolites biosynthesis, transport, and catabolism 119387413 Common - Phosphatidylethanolamine N-methyltransferase Pden_4690 131 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 119387498 Common - protein of unknown function DUF1045 Pden_4775 27 None None None 119387657 Common - hypothetical protein Pden_4935 30 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 119387571 Common - inner-membrane translocator Pden_4849 163 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 119387404 Common - transcriptional regulator, TetR family Pden_4681 58 COG1309 AcrR, Transcriptional regulator Transcription 119387711 Common - transcriptional regulator, Fis family Pden_4989 106 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 119387846 Nonpathogen - hypothetical protein Pden_5124 1 None None None 119387287 Common - Hemolysin-type calcium-binding region Pden_4562 111 None None None 119387594 Common - FAD linked oxidase domain protein Pden_4872 192 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 119387455 Common - methylamine dehydrogenase accessory protein MauD Pden_4732 18 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 119387606 Nonpathogen - hypothetical protein Pden_4884 1 None None None 119387616 Common - FAD dependent oxidoreductase Pden_4894 127 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 119387526 Common - adenylyltransferase Pden_4803 21 COG1708 COG1708, Predicted nucleotidyltransferases General function prediction only 119387376 Common - transcriptional regulator, RpiR family Pden_4653 117 COG1737 RpiR, Transcriptional regulators Transcription 119387735 Common - Alkanesulfonate monooxygenase Pden_5013 81 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 119387366 Common - tyrosinase Pden_4643 6 None None None 119387470 Common - binding-protein-dependent transport systems inner membrane component Pden_4747 190 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 119387374 Common - ABC transporter related Pden_4651 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 119387358 Common - Uncharacterized conserved protein UCP012702 Pden_4633 32 COG5476 COG5476, Uncharacterized conserved protein Function unknown 119387302 Common - short chain dehydrogenase Pden_4577 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 119387241 Common - 3-demethylubiquinone-9 3-methyltransferase Pden_4515 63 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 119387679 Common - putative transcriptional regulator, AsnC family Pden_4957 141 COG1522 Lrp, Transcriptional regulators Transcription 119387251 Common - transcriptional regulator, MarR family Pden_4525 75 COG1846 MarR, Transcriptional regulators Transcription 119387753 Common - ABC transporter related Pden_5031 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 119387856 Common - hypothetical protein Pden_5134 19 COG3391 COG3391, Uncharacterized conserved protein Function unknown 119387506 Common - phosphonates metabolism transcriptional regulator PhnF Pden_4783 127 COG2188 PhnF, Transcriptional regulators Transcription 119387832 Common - putative signal-transduction protein with CBS domains Pden_5110 70 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 119387475 Common - aldehyde dehydrogenase Pden_4752 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 119387645 Common - regulatory proteins, IclR Pden_4923 121 COG1414 IclR, Transcriptional regulator Transcription 119387540 Common - TRAP dicarboxylate transporter, DctP subunit Pden_4817 101 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 119387549 Nonpathogen - hypothetical protein Pden_4826 2 None None None 119387763 Common - hypothetical protein Pden_5041 14 None None None 119387558 Common - putative transcriptional regulator, GntR family Pden_4836 218 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 119387538 Nonpathogen - hypothetical protein Pden_4815 5 None None None 119387799 Common - Alpha/beta hydrolase fold-3 domain protein Pden_5077 94 COG0657 Aes, Esterase/lipase Lipid metabolism 119387429 Common - beta-lactamase domain protein Pden_4706 192 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 119387682 Common - binding-protein-dependent transport systems inner membrane component Pden_4960 220 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 119387482 Common - catalytic domain of components of various dehydrogenase complexes Pden_4759 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 119387280 Common - response regulator receiver protein Pden_4555 177 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 119387676 Common - putative acetyltransferase protein Pden_4954 26 COG2153 ElaA, Predicted acyltransferase General function prediction only 119387420 Common - efflux transporter, RND family, MFP subunit Pden_4697 32 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 119387271 Common - TRAP dicarboxylate transporter- DctP subunit Pden_4546 79 COG4663 FcbT1, TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 119387489 Common - periplasmic binding protein/LacI transcriptional regulator Pden_4766 129 COG1609 PurR, Transcriptional regulators Transcription 119387521 Common - phenylacetic acid degradation protein paaN Pden_4798 142 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 119387568 Common - periplasmic binding protein/LacI transcriptional regulator Pden_4846 125 COG1609 PurR, Transcriptional regulators Transcription 119387512 Common - NADPH-dependent FMN reductase Pden_4789 119 COG0431 COG0431, Predicted flavoprotein General function prediction only 119387774 Common - short-chain dehydrogenase/reductase SDR Pden_5052 237 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 119387269 Common - Tripartite ATP-independent periplasmic transporter, DctQ component Pden_4544 63 COG4665 FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component Secondary metabolites biosynthesis, transport, and catabolism 119387447 Common - nucleoside diphosphate kinase regulator Pden_4724 49 COG0782 GreA, Transcription elongation factor Transcription 119387468 Nonpathogen - Sel1 domain protein repeat-containing protein Pden_4745 1 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 119387666 Common - ABC transporter related Pden_4944 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 119387278 Common - cyclic nucleotide-binding protein Pden_4553 156 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 119387384 Common - Phosphoglycerate mutase Pden_4661 123 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 119387706 Common - Transketolase, central region Pden_4984 197 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 119387713 Common - Alcohol dehydrogenase GroES domain protein Pden_4991 170 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 119387352 Nonpathogen - hypothetical protein Pden_4627 1 None None None 119387584 Common - polar amino acid ABC transporter, inner membrane subunit Pden_4862 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 119387342 Common - transcriptional regulator, GntR family Pden_4617 138 COG1802 GntR, Transcriptional regulators Transcription 119387582 Common - D-amino-acid dehydrogenase Pden_4860 117 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 119387810 Common - short-chain dehydrogenase/reductase SDR Pden_5088 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 119387642 Nonpathogen - hypothetical protein Pden_4920 2 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 119387784 Common - L-lactate dehydrogenase (cytochrome) Pden_5062 111 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 119387295 Common - hypothetical protein Pden_4570 3 None None None 119387391 Common - ABC transporter related Pden_4668 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 119387853 Common - TonB-dependent siderophore receptor Pden_5131 104 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 119387493 Common - inner-membrane translocator Pden_4770 111 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 119387633 Common - extracellular solute-binding protein Pden_4911 94 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 119387748 Nonpathogen - hypothetical protein Pden_5026 1 None None None 119387795 Common - bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase Pden_5073 98 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 119387790 Common - transcriptional regulator, LysR family Pden_5068 184 COG0583 LysR, Transcriptional regulator Transcription 119387246 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Pden_4520 42 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 119387290 Common - major facilitator superfamily MFS_1 Pden_4565 17 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 119387415 Common - phosphatidylserine decarboxylase Pden_4692 94 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 119387456 Common - methylamine dehydrogenase light chain Pden_4733 12 None None None 119387651 Common - 2-keto-3-deoxy-galactonokinase Pden_4929 38 COG3734 DgoK, 2-keto-3-deoxy-galactonokinase Carbohydrate transport and metabolism 119387658 Common - FAD dependent oxidoreductase Pden_4936 102 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 119387603 Common - Substrate-binding region of ABC-type glycine betaine transport system Pden_4881 48 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 119387402 Common - riboflavin synthase subunit beta Pden_4679 169 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 119387336 Common - Catalase Pden_4611 125 COG0753 KatE, Catalase Inorganic ion transport and metabolism 119387755 Common - BioY protein Pden_5033 11 COG1268 BioY, Uncharacterized conserved protein General function prediction only 119387686 Common - hypothetical protein Pden_4964 236 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 119387244 Common - regulatory protein, ArsR Pden_4518 28 COG0640 ArsR, Predicted transcriptional regulators Transcription 119387816 Common - AMP-dependent synthetase and ligase Pden_5094 221 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 119387423 Common - cytochrome c, class II Pden_4700 34 COG3909 COG3909, Cytochrome c556 Energy production and conversion 119387485 Common - hypothetical protein Pden_4762 14 COG5397 COG5397, Uncharacterized conserved protein Function unknown 119387596 Common - spermidine/putrescine ABC transporter ATPase subunit Pden_4874 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 119387436 Common - septum site-determining protein MinC Pden_4713 104 COG0850 MinC, Septum formation inhibitor Cell division and chromosome partitioning 119387274 Common - iron-containing alcohol dehydrogenase Pden_4549 173 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 119387761 Common - ABC-2 type transporter Pden_5039 34 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 119387647 Common - polar amino acid ABC transporter, inner membrane subunit Pden_4925 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 119387670 Nonpathogen - hypothetical protein Pden_4948 1 None None None 119387347 Common - amidohydrolase Pden_4622 89 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 119387800 Common - periplasmic binding protein/LacI transcriptional regulator Pden_5078 127 COG1609 PurR, Transcriptional regulators Transcription 119387776 Common - Amidase Pden_5054 221 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 119387718 Common - CoA-binding domain protein Pden_4996 145 COG1042 COG1042, Acyl-CoA synthetase (NDP forming) Energy production and conversion 119387604 Common - binding-protein-dependent transport systems inner membrane component Pden_4882 188 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 119387627 Common - Methenyltetrahydrofolate cyclohydrolase Pden_4905 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 119387628 Nonpathogen - Sarcosine oxidase, gamma subunit Pden_4906 6 COG4583 COG4583, Sarcosine oxidase gamma subunit Amino acid transport and metabolism 119387720 Common - ABC transporter related Pden_4998 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 119387260 Common - putative FecR Pden_4534 48 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 119387408 Common - secretion protein HlyD family protein Pden_4685 94 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 119387309 Common - short chain dehydrogenase Pden_4584 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 119387504 Common phnH carbon-phosphorus lyase complex subunit Pden_4781 40 COG3625 PhnH, Uncharacterized enzyme of phosphonate metabolism Inorganic ion transport and metabolism 119387830 Common - ubiquinol oxidase, subunit II Pden_5108 115 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 119387256 Common - 2-dehydropantoate 2-reductase Pden_4530 112 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 119387435 Common - septum site-determining protein MinD Pden_4712 141 COG2894 MinD, Septum formation inhibitor-activating ATPase Cell division and chromosome partitioning 119387325 Common - putative glutaconate CoA-transferase, subunit A Pden_4600 40 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 119387544 Common - hypothetical protein Pden_4821 8 COG1661 COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif General function prediction only 119387542 Common - acetyl-CoA acetyltransferase Pden_4819 101 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 119387812 Common - enoyl-CoA hydratase Pden_5090 174 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 119387733 Common - binding-protein-dependent transport systems inner membrane component Pden_5011 173 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 119387727 Common - binding-protein-dependent transport systems inner membrane component Pden_5005 187 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 119387308 Common - protein of unknown function DUF1330 Pden_4583 6 COG5470 COG5470, Uncharacterized conserved protein Function unknown 119387550 Common - TonB-dependent siderophore receptor Pden_4827 123 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 119387440 Common - TRAP dicarboxylate transporter, DctM subunit Pden_4717 122 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 119387484 Common - protein of unknown function DUF105 Pden_4761 15 COG1865 COG1865, Uncharacterized conserved protein Function unknown 119387610 Common - Substrate-binding region of ABC-type glycine betaine transport system Pden_4888 90 COG1732 OpuBC, Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) Cell envelope biogenesis, outer membrane 119387664 Common - acetolactate synthase 2 catalytic subunit Pden_4942 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 119387289 Common - TrpR binding protein WrbA Pden_4564 117 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 119387746 Nonpathogen - hypothetical protein Pden_5024 1 None None None 119387822 Common - esterase/lipase-like protein Pden_5100 31 COG0657 Aes, Esterase/lipase Lipid metabolism 119387495 Common - RNA polymerase sigma factor SigJ Pden_4772 61 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 119387282 Common - peptidase S8 and S53, subtilisin, kexin, sedolisin Pden_4557 83 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 119387297 Common - major facilitator superfamily MFS_1 Pden_4572 106 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 119387381 Common - extracellular solute-binding protein, family 1 Pden_4658 87 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 119387378 Common - putative regulatory lipoprotein Pden_4655 58 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 119387254 Common - helix-turn-helix- domain containing protein, AraC type Pden_4528 67 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 119387680 Common - ABC transporter related Pden_4958 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 119387519 Common - inner-membrane translocator Pden_4796 159 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 119387499 Common - phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN Pden_4776 87 COG3709 COG3709, Uncharacterized component of phosphonate metabolism Inorganic ion transport and metabolism 119387688 Common - protein of unknown function DUF861, cupin_3 Pden_4966 29 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 119387556 Common - transcriptional regulator, AraC family Pden_4834 66 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 119387855 Common - ABC transporter related Pden_5133 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 119387619 Common - Rieske (2Fe-2S) domain protein Pden_4897 83 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 119387631 Common - sarcosine oxidase, beta subunit family Pden_4909 95 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 119387601 Common - L-carnitine dehydratase/bile acid-inducible protein F Pden_4879 115 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 119387449 Common - MscS Mechanosensitive ion channel Pden_4726 163 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 119387510 Common - phosphonate ABC transporter, ATPase subunit Pden_4787 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 119387416 Common - uracil-xanthine permease Pden_4693 125 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 119387466 Common - Peptidoglycan-binding domain 1 protein Pden_4743 13 COG3409 COG3409, Putative peptidoglycan-binding domain-containing protein Cell envelope biogenesis, outer membrane 119387528 Common - phenylacetic acid catabolic family protein Pden_4805 19 COG3396 COG3396, Uncharacterized conserved protein Function unknown 119387354 Common - peptidase S9, prolyl oligopeptidase active site domain protein Pden_4629 73 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 119387586 Common - extracellular solute-binding protein, family 3 Pden_4864 167 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 119387708 Common - ATP-NAD/AcoX kinase Pden_4986 15 COG3199 COG3199, Uncharacterized conserved protein Function unknown 119387698 Common - acetylornithine deacetylase Pden_4976 193 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 119387312 Nonpathogen - hypothetical protein Pden_4587 1 None None None 119387323 Common - L-carnitine dehydratase/bile acid-inducible protein F Pden_4598 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 119387767 Common - (S)-2-hydroxy-acid oxidase Pden_5045 110 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 119387779 Common - secretion protein HlyD family protein Pden_5057 65 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 119387575 Nonpathogen - hypothetical protein Pden_4853 1 COG4907 COG4907, Predicted membrane protein Function unknown 119387814 Common - thioesterase superfamily protein Pden_5092 20 COG0824 FcbC, Predicted thioesterase General function prediction only 119387442 Common - periplasmic nitrate reductase NapE Pden_4719 15 COG4459 NapE, Periplasmic nitrate reductase system, NapE component Energy production and conversion 119387837 Common - hypothetical protein Pden_5115 37 None None None 119387361 Common - Carbohydrate-selective porin OprB Pden_4636 4 COG3659 OprB, Carbohydrate-selective porin Cell envelope biogenesis, outer membrane 119387406 Common - 3-oxoacid CoA-transferase, A subunit Pden_4683 101 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 119387419 Common - acriflavin resistance protein Pden_4696 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 119387546 Common - membrane protein Pden_4823 45 COG3174 COG3174, Predicted membrane protein Function unknown 119387369 Common - cyclase family protein Pden_4646 62 COG1878 COG1878, Predicted metal-dependent hydrolase General function prediction only 119387474 Common - FAD dependent oxidoreductase Pden_4751 91 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 119387479 Common - putative transcriptional regulator, AsnC family Pden_4756 165 COG1522 Lrp, Transcriptional regulators Transcription 119387760 Common - capsule polysaccharide export protein-like Pden_5038 36 COG3524 KpsE, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 119387338 Nonpathogen - hypothetical protein Pden_4613 1 None None None 119387353 Common - D-amino-acid dehydrogenase Pden_4628 101 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 119387293 Nonpathogen - hypothetical protein Pden_4568 1 None None None 119387341 Common - dihydropyrimidinase Pden_4616 204 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 119387626 Common - formyltetrahydrofolate deformylase Pden_4904 218 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 119387266 Nonpathogen - hypothetical protein Pden_4541 1 None None None 119387780 Common - transcriptional regulator, TetR family Pden_5058 33 COG1309 AcrR, Transcriptional regulator Transcription 119387841 Common - NADPH-dependent FMN reductase Pden_5119 53 COG0431 COG0431, Predicted flavoprotein General function prediction only 119387687 Common - GCN5-related N-acetyltransferase Pden_4965 20 COG0456 RimI, Acetyltransferases General function prediction only 119387397 Common - protein of unknown function DUF1449 Pden_4674 9 None None None 119387387 Common - Shikimate dehydrogenase Pden_4664 197 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 119387648 Common - ABC transporter related Pden_4926 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 119387401 Common - hypothetical protein Pden_4678 9 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 119387805 Common - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pden_5083 161 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 119387438 Common - TRAP dicarboxylate transporter, DctP subunit Pden_4715 99 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 119387650 Common - Galactarate dehydratase Pden_4928 73 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 119387451 Common - transcriptional regulator, LysR family Pden_4728 109 COG0583 LysR, Transcriptional regulator Transcription 119387611 Common - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Pden_4889 190 COG0388 COG0388, Predicted amidohydrolase General function prediction only 119387333 Common - putative general stress protein 26 Pden_4608 33 COG3871 COG3871, Uncharacterized stress protein (general stress protein 26) General function prediction only 119387818 Common - inner-membrane translocator Pden_5096 125 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 119387598 Common - dihydrodipicolinate synthetase Pden_4876 231 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 119387672 Nonpathogen - hypothetical protein Pden_4950 1 None None None 119387696 Common - 5-oxoprolinase (ATP-hydrolyzing) Pden_4974 113 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 119387318 Common - molybdopterin guanine dinucleotide-containing S/N-oxide reductases Pden_4593 163 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 119387744 Common - beta-ketoadipyl CoA thiolase Pden_5022 172 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 119387319 Common - hypothetical protein Pden_4594 195 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 119387717 Common - transcriptional regulator, GntR family Pden_4995 133 COG1802 GntR, Transcriptional regulators Transcription 119387298 Common - protein of unknown function DUF6, transmembrane Pden_4573 104 COG2962 RarD, Predicted permeases General function prediction only 119387785 Common - Alcohol dehydrogenase, zinc-binding domain protein Pden_5063 183 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 119387395 Common - transcriptional regulator, GntR family Pden_4672 35 COG1802 GntR, Transcriptional regulators Transcription 119387702 Common - Alcohol dehydrogenase, zinc-binding domain protein Pden_4980 200 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 119387614 Common - MmgE/PrpD family protein Pden_4892 60 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 119387791 Common - O-succinylhomoserine (thiol)-lyase Pden_5069 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 119387692 Common - 3-isopropylmalate dehydrogenase Pden_4970 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 119387710 Common - protein of unknown function UPF0118 Pden_4988 210 COG0628 PerM, Predicted permease General function prediction only 119387291 Common - protein of unknown function DUF6, transmembrane Pden_4566 115 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 119387469 Common - binding-protein-dependent transport systems inner membrane component Pden_4746 143 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 119387324 Common - putative CoA transferase, subunit B Pden_4599 33 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 119387638 Common - FAD dependent oxidoreductase Pden_4916 186 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 119387554 Common - FMN-binding negative transcriptional regulator Pden_4832 60 COG2808 PaiB, Transcriptional regulator Transcription 119387820 Common - ABC transporter related Pden_5098 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 119387517 Common - ABC transporter related Pden_4794 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 119387765 Common - UDP-galactopyranose mutase Pden_5043 58 COG0562 Glf, UDP-galactopyranose mutase Cell envelope biogenesis, outer membrane 119387807 Common - hydratase/decarboxylase family protein Pden_5085 4 COG3971 COG3971, 2-keto-4-pentenoate hydratase Secondary metabolites biosynthesis, transport, and catabolism 119387573 Common - periplasmic binding protein/LacI transcriptional regulator Pden_4851 91 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 119387523 Common - phenylacetic acid degradation protein PaaD Pden_4800 62 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 119387252 Common - Methyltransferase type 11 Pden_4526 60 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 119387777 Common - ABC-2 type transporter Pden_5055 158 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 119387458 Nonpathogen - hypothetical protein Pden_4735 1 None None None 119387770 Common - ABC transporter related Pden_5048 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 119387389 Common - dihydrodipicolinate synthetase Pden_4666 163 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 119387587 Common - aldehyde dehydrogenase Pden_4865 134 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 119387608 Common - glycine betaine/L-proline ABC transporter, ATPase subunit Pden_4886 249 COG1125 OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components Amino acid transport and metabolism 119387564 Common - ABC transporter related Pden_4842 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 119387534 Common - beta-ketoadipyl CoA thiolase Pden_4811 170 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 119387357 Common - beta-lactamase Pden_4632 72 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 119387726 Common - ABC transporter related Pden_5004 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 119387824 Common - ATPase, P-type (transporting), HAD superfamily, subfamily IC Pden_5102 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 119387508 Common - phosphonate ABC transporter, inner membrane subunit Pden_4785 95 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 119387839 Common - protein of unknown function DUF1234 Pden_5117 54 COG3545 COG3545, Predicted esterase of the alpha/beta hydrolase fold General function prediction only 119387431 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Pden_4708 126 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 119387729 Common - monooxygenase, NtaA/SnaA/SoxA family Pden_5007 68 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 119387809 Common - salicylyl-CoA 5-hydroxylase Pden_5087 179 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 119387732 Common - ABC transporter related Pden_5010 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 119387304 Common - transcriptional regulator, HxlR family Pden_4579 138 COG1733 COG1733, Predicted transcriptional regulators Transcription 119387548 Common - ATP-dependent metalloprotease FtsH Pden_4825 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 119387677 Common - FAD dependent oxidoreductase Pden_4955 109 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 119387321 Common - transcriptional regulator, Fis family Pden_4596 144 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 119387536 Common - Penicillin amidase Pden_4813 79 COG2366 COG2366, Protein related to penicillin acylase General function prediction only 119387410 Common - ABC-2 type transporter Pden_4687 119 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 119387472 Common - Substrate-binding region of ABC-type glycine betaine transport system Pden_4749 78 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 119387570 Common - PfkB domain protein Pden_4848 168 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 119387328 Common - putative ABC transporter binding protein component Pden_4603 67 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 119387305 Common - NADPH-dependent FMN reductase Pden_4580 24 COG0431 COG0431, Predicted flavoprotein General function prediction only 119387613 Common - AMP-dependent synthetase and ligase Pden_4891 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 119387797 Common - binding-protein-dependent transport systems inner membrane component Pden_5075 219 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 119387751 Common - hypothetical protein Pden_5029 5 None None None 119387739 Common - hypothetical protein Pden_5017 28 COG3560 FMR2, Predicted oxidoreductase related to nitroreductase General function prediction only 119387343 Common - Asp/Glu racemase Pden_4618 33 COG3473 COG3473, Maleate cis-trans isomerase Secondary metabolites biosynthesis, transport, and catabolism 119387432 Common - hypothetical protein Pden_4709 12 None None None 119387577 Common - Malate/L-lactate dehydrogenase Pden_4855 67 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 119387722 Common - inner-membrane translocator Pden_5000 93 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 119387849 Common - transcriptional regulator, Fis family Pden_5127 16 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 119387652 Common - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase Pden_4930 124 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 119387393 Common - polar amino acid ABC transporter, inner membrane subunit Pden_4670 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 119387655 Common - hypothetical protein Pden_4933 14 COG5589 COG5589, Uncharacterized conserved protein Function unknown 119387737 Nonpathogen - hypothetical protein Pden_5015 1 None None None 119387481 Common - Transketolase, central region Pden_4758 214 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 119387272 Common - Glutamate--ammonia ligase Pden_4547 223 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 119387444 Common - periplasmic nitrate reductase, large subunit Pden_4721 187 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 119387643 Common - alpha/beta hydrolase fold Pden_4921 16 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 119387264 Common - RNA-directed DNA polymerase (Reverse transcriptase) Pden_4539 93 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 119387279 Common - hypothetical protein Pden_4554 10 None None None 119387623 Common - luciferase family protein Pden_4901 60 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 119387661 Common - UbiD family decarboxylases Pden_4939 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 119387843 Nonpathogen - hypothetical protein Pden_5121 2 None None None 119387811 Common - transcriptional regulator, MarR family Pden_5089 118 COG1846 MarR, Transcriptional regulators Transcription 119387515 Common - 3-hydroxyacyl-CoA dehydrogenase, NAD-binding Pden_4792 161 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 119387689 Common - FAD dependent oxidoreductase Pden_4967 124 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 119387624 Common - ABC transporter related Pden_4902 248 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 119387348 Common - dipeptidase family protein Pden_4623 30 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 119387363 Nonpathogen - hypothetical protein Pden_4638 2 None None None 119387364 Common - hypothetical protein Pden_4641 11 None None None 119387464 Common - integral membrane sensor signal transduction histidine kinase Pden_4741 220 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 119387385 Common - Pyridoxamine-phosphate oxidase Pden_4662 132 COG0259 PdxH, Pyridoxamine-phosphate oxidase Coenzyme metabolism 119387580 Nonpathogen - Tripartite ATP-independent periplasmic transporter, DctQ component Pden_4858 12 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 119387243 Common - transcriptional regulator, MarR family Pden_4517 21 COG1846 MarR, Transcriptional regulators Transcription 119387326 Common - ABC transporter related Pden_4601 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 119387851 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Pden_5129 44 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 119387589 Common - Dihydrodipicolinate synthase Pden_4867 154 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 119387591 Common - ABC-type branched-chain amino acid transport systems periplasmic component-like Pden_4869 10 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 119387772 Common - binding-protein-dependent transport systems inner membrane component Pden_5050 205 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 119387462 Common - alkylphosphonate utilization operon protein PhnA Pden_4739 88 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 119387690 Common - haloacid dehalogenase, type II Pden_4968 44 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 119387641 Common - methionine aminopeptidase Pden_4919 237 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 119387490 Common - Xylose isomerase domain protein TIM barrel Pden_4767 70 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 119387316 Common - Rhodanese domain protein Pden_4591 68 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 119387787 Common - Tripartite ATP-independent periplasmic transporter, DctQ component Pden_5065 14 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 119387704 Common - short-chain dehydrogenase/reductase SDR Pden_4982 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 119387566 Common - binding-protein-dependent transport systems inner membrane component Pden_4844 158 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 119387487 Common - integral membrane sensor signal transduction histidine kinase Pden_4764 218 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 119387496 Common - alkylhydroperoxidase like protein, AhpD family Pden_4773 79 COG2128 COG2128, Uncharacterized conserved protein Function unknown 119387250 Nonpathogen - hypothetical protein Pden_4524 2 None None None 119387531 Common - phenylacetate-CoA oxygenase, PaaI subunit Pden_4808 42 COG3396 COG3396, Uncharacterized conserved protein Function unknown 119387675 Common - putative ammonia monooxygenase Pden_4953 27 COG3180 AbrB, Putative ammonia monooxygenase General function prediction only 119387427 Common - protein of unknown function DUF395, YeeE/YedE Pden_4704 36 COG2391 COG2391, Predicted transporter component General function prediction only 119387480 Common - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) Pden_4757 154 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 119387371 Common - protein of unknown function DUF849 Pden_4648 61 COG3246 COG3246, Uncharacterized conserved protein Function unknown 119387593 Common - pyrroline-5-carboxylate reductase Pden_4871 197 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 119387637 Common - transcriptional regulator, DeoR family Pden_4915 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 119387248 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Pden_4522 45 COG3607 COG3607, Predicted lactoylglutathione lyase General function prediction only 119387694 Common - transcriptional regulator, LysR family Pden_4972 183 COG0583 LysR, Transcriptional regulator Transcription 119387724 Common - Rhodanese domain protein Pden_5002 9 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 119387668 Common - binding-protein-dependent transport systems inner membrane component Pden_4946 195 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 119387607 Common - binding-protein-dependent transport systems inner membrane component Pden_4885 154 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 119387259 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Pden_4533 157 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 119387284 Nonpathogen - hypothetical protein Pden_4559 2 COG3073 RseA, Negative regulator of sigma E activity Signal transduction mechanisms 119387452 Nonpathogen - hypothetical protein Pden_4729 2 None None None 119387715 Common - major facilitator superfamily MFS_1 Pden_4993 30 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 119387525 Common - transcriptional regulator, TetR family Pden_4802 84 COG1309 AcrR, Transcriptional regulator Transcription 119387559 Common - protein of unknown function DUF6, transmembrane Pden_4837 42 None None None 119387520 Common - Extracellular ligand-binding receptor Pden_4797 133 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 119387684 Common - HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) Pden_4962 26 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only