Lactococcus lactis subsp. cremoris SK11 plasmid 3, complete sequence NC_008505 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 116326556 Common - transcription activator, effector binding domain LACR_C09 19 COG3708 COG3708, Uncharacterized protein conserved in bacteria Function unknown 116326562 Common - hypothetical protein LACR_C15 17 None None None 116326572 Common - hypothetical protein LACR_C26 2 None None None 116326581 Common - acetoin/pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase LACR_C35 243 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 116326591 Common - Transposase LACR_C45 26 None None None 116326601 Common - Transposase LACR_C58 22 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 116326570 Nonpathogen - hypothetical protein LACR_C23 1 None None None 116326560 Common - cell surface protein LACR_C13 8 None None None 116326579 Common - D-lactate dehydrogenase LACR_C33 33 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 116326596 Common - Transposase LACR_C51 49 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 116326551 Common - hypothetical protein LACR_C04 8 None None None 116326558 Common - Glycopeptide antibiotics resistance protein LACR_C11 5 None None None 116326603 Common - Transposase LACR_C60 147 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 116326586 Nonpathogen - hypothetical protein LACR_C40 1 None None None 116326583 Common - Transcriptional regulator LACR_C37 95 COG1309 AcrR, Transcriptional regulator Transcription 116326598 Common - ATPase for chromosome partitioning LACR_C55 196 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 116326553 Common - Anthranilate/para-aminobenzoate synthase component II LACR_C06 240 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 116326548 Common - Putative multicopper oxidase LACR_C01 116 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 116326593 Common - Cold shock protein LACR_C47 183 COG1278 CspC, Cold shock proteins Transcription 116326595 Nonpathogen - hypothetical protein LACR_C49 1 None None None 116326600 Common - hypothetical protein LACR_C57 9 None None None 116326576 Common - Mg2+ and Co2+ transporter LACR_C30 24 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 116326566 Common - maturase MatR LACR_C19 90 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 116326588 Common - Subtilisin-like serine protease LACR_C42 85 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 116326555 Nonpathogen - Acetyltransferase, GNAT family LACR_C08 4 COG3153 COG3153, Predicted acetyltransferase General function prediction only 116326605 Common - Signal transduction histidine kinase LACR_C62 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 116326564 Common - repB protein, Helix-turn-helix XRE-family LACR_C17 3 None None None 116326574 Nonpathogen - Dienelactone hydrolase family protein LACR_C28 6 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 116326607 Nonpathogen - hypothetical protein LACR_C64 1 None None None 116326582 Common - Amidase LACR_C36 36 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 116326557 Common - Permease of the major facilitator superfamily LACR_C10 116 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 116326589 Common prsA peptidylprolyl isomerase LACR_C43 97 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 116326573 Common - pyrrolidone-carboxylate peptidase LACR_C27 56 COG2039 Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) Posttranslational modification, protein turnover, chaperones 116326565 Common - Relaxase/Mobilisation nuclease domain LACR_C18 4 None None None 116326590 Common - Transposase LACR_C44 49 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 116326604 Common - DNA-binding response regulator, OmpR family (Rec-wHTH domains) LACR_C61 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 116326599 Nonpathogen - hypothetical protein LACR_C56 1 None None None 116326559 Common - Transposase LACR_C12 49 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 116326571 Common - Exopolysaccharide biosynthesis protein LACR_C24 7 COG3955 COG3955, Exopolysaccharide biosynthesis protein Cell envelope biogenesis, outer membrane 116326602 Common - Transposase LACR_C59 142 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 116326584 Nonpathogen - hypothetical protein LACR_C38 1 None None None 116326563 Common - Replication initiator protein LACR_C16 23 COG5527 COG5527, Protein involved in initiation of plasmid replication DNA replication, recombination, and repair 116326580 Common - Transposase LACR_C34 134 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 116326597 Common - hypothetical protein of possible phage origin LACR_C54 3 None None None 116326550 Common - Transposase LACR_C03 34 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 116326578 Common - Transposase LACR_C32 49 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 116326561 Common - cell surface protein LACR_C14 7 None None None 116326568 Common - MobC, Bacterial mobilisation protein (MobC) LACR_C21 7 None None None 116326594 Common - Cold shock protein LACR_C48 163 COG1278 CspC, Cold shock proteins Transcription 116326585 Common - hypothetical protein LACR_C39 3 None None None 116326569 Nonpathogen - hypothetical protein LACR_C22 1 None None None 116326577 Nonpathogen - hypothetical protein LACR_C31 2 None None None 116326608 Common - Surface antigen LACR_C65 17 COG3883 COG3883, Uncharacterized protein conserved in bacteria Function unknown 116326549 Common - Transposase LACR_C02 150 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 116326552 Common - Transposase LACR_C05 26 None None None 116326575 Nonpathogen - hypothetical protein LACR_C29 1 None None None 116326567 Common - Relaxase/Mobilisation nuclease domain LACR_C20 8 None None None 116326606 Common - prolipoprotein diacylglyceryl transferase LACR_C63 205 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 116326554 Common - Anthranilate/para-aminobenzoate synthase component I LACR_C07 221 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 116326592 Common - hypothetical protein LACR_C46 2 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 116326587 Common - Transposase LACR_C41 49 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair