Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence NC_008384 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 116255506 Common - putative glutathione S-transferase pRL110307 18 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 116255472 Common - putative hth-type transcriptional regulator pRL110272 9 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 116255300 Common hsdR putative type I restriction-modification system HsdR pRL110101 137 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 116255351 Common - hypothetical protein pRL110151 59 COG3395 COG3395, Uncharacterized protein conserved in bacteria Function unknown 116255307 Common - hypothetical protein pRL110108 63 COG1273 COG1273, Uncharacterized conserved protein Function unknown 116255697 Common - putative FMN oxidoreductase pRL110496 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 116255807 Common - putative trifolitoxin related protein pRL110606 30 COG3629 DnrI, DNA-binding transcriptional activator of the SARP family Signal transduction mechanisms 116255787 Nonpathogen - hypothetical protein pRL110586 2 None None None 116255813 Common - putative permease component of ABC transporter pRL110612 178 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 116255800 Common - putative oxidoreductase pRL110599 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 116255627 Nonpathogen - hypothetical protein pRL110426 1 None None None 116255420 Common - hypothetical protein pRL110219 30 COG0457 NrfG, FOG: TPR repeat General function prediction only 116255632 Nonpathogen - putative transmembrane protein pRL110431 1 None None None 116255482 Common abfA putative alpha-N-arabinofuranosidase pRL110282 31 COG3534 AbfA, Alpha-L-arabinofuranosidase Carbohydrate transport and metabolism 116255523 Common - putative cation uptake system protein pRL110323 101 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 116255774 Common - putative transmembrane pilus component protein pRL110573 70 COG4965 TadB, Flp pilus assembly protein TadB Intracellular trafficking and secretion 116255425 Common - putative two-component response regulator pRL110224 198 COG4566 TtrR, Response regulator Signal transduction mechanisms 116255279 Common - putative ATP-binding component of ABC transporter pRL110079 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 116255682 Common - putative LysR family transcriptional regulator pRL110481 176 COG0583 LysR, Transcriptional regulator Transcription 116255748 Common - hypothetical protein pRL110547 139 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 116255398 Nonpathogen - hypothetical protein pRL110196 1 None None None 116255328 Common - putative CobW family protein pRL110127 127 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 116255588 Common - putative pectin degradation protein pRL110387 40 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 116255296 Common - hypothetical protein pRL110097 15 None None None 116255341 Common - hypothetical protein pRL110141 5 None None None 116255366 Common - putative cyclohexadiene dehydrogenase pRL110166 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 116255430 Common - hypothetical protein pRL110229 2 None None None 116255811 Common - putative LysR family transcriptional regulator pRL110610 191 COG0583 LysR, Transcriptional regulator Transcription 116255270 Common - hypothetical protein pRL110070 52 COG3791 COG3791, Uncharacterized conserved protein Function unknown 116255358 Common - putative transcription regulatory protein pRL110158 124 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 116255691 Nonpathogen - putative transmembrane protein pRL110490 1 None None None 116255615 Common rhaR putative DeoR family transcriptional regulator involved in competition for nodulation pRL110414 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 116255755 Common glnT glutamine synthetase III pRL110554 224 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 116255442 Common - putative AraC family transcriptional regulator pRL110241 144 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 116255246 Common - putative transcriptional regulator pRL110046 104 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 116255211 Common - putative trehalose synthase pRL110011 130 COG3280 TreY, Maltooligosyl trehalose synthase Carbohydrate transport and metabolism 116255653 Common - putative transcriptional regulator pRL110452 80 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 116255760 Common - putative AraC family transcriptional regulator pRL110559 132 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 116255645 Common - hypothetical protein pRL110444 7 None None None 116255224 Common - putative acyl-CoA transferase pRL110024 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 116255635 Common - putative ATP binding component of ABC transporter pRL110434 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 116255532 Common - hypothetical protein pRL110332 32 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 116255235 Common - hypothetical protein pRL110035 26 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 116255554 Nonpathogen - hypothetical protein pRL110354A 1 None None None 116255573 Common - putative permease component of ABC transporter pRL110372 219 COG4208 CysW, ABC-type sulfate transport system, permease component Inorganic ion transport and metabolism 116255432 Common - putative DNA-binding protein pRL110231 16 None None None 116255519 Common - putative regulator pRL110319 67 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 116255556 Common - putative adenylate/guanylate cyclase pRL110355 44 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 116255407 Common hutI imidazolonepropionase pRL110206 120 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 116255718 Common - putative substrate-binding component of ABC transporter pRL110517 185 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 116255461 Common - putative cell division (penicillin-binding family) protein pRL110261 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 116255605 Common - putative permease component of ABC transporter pRL110404 147 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 116255834 Common cobF precorrin 6A synthase pRL110632 65 COG2243 CobF, Precorrin-2 methylase Coenzyme metabolism 116255721 Common - putative transmembrane MFS family transporter protein pRL110520 125 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 116255240 Common cyoC putative cytochrome o ubiquinol oxidase subunit III pRL110040 158 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 116255794 Nonpathogen - hypothetical protein pRL110593 1 None None None 116255259 Common - hypothetical protein pRL110059 5 None None None 116255669 Common - putative transmembrane protein pRL110468 7 None None None 116255458 Nonpathogen - hypothetical protein pRL110258 1 None None None 116255414 Common - putative permease component of ABC transporter pRL110213 172 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 116255747 Common minC septum formation inhibitor pRL110546 101 COG0850 MinC, Septum formation inhibitor Cell division and chromosome partitioning 116255731 Common - 5-keto-4-deoxyuronate isomerase pRL110530 27 COG3717 KduI, 5-keto 4-deoxyuronate isomerase Carbohydrate transport and metabolism 116255828 Common cobL precorrin-6y c(5,15)-methyltransferase [decarboxylating] (precorrin-6 methyltransferase) (precorrin-6y methylase) pRL110626 109 COG2241 CobL, Precorrin-6B methylase 1 Coenzyme metabolism 116255385 Common - putative LysR family transcriptional regulatory protein pRL110184 133 COG0583 LysR, Transcriptional regulator Transcription 116255252 Common - putative permease component of ABC transporter pRL110052 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255217 Common - putative TetR-type transcriptional regulator pRL110017 94 COG1309 AcrR, Transcriptional regulator Transcription 116255260 Common - putative transmembrane component of ABC transporter pRL110060 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 116255332 Nonpathogen - hypothetical protein pRL110131 1 None None None 116255203 Common repC putative replication protein C pRL110003 18 None None None 116255473 Common - hypothetical protein pRL110273 66 COG3550 HipA, Uncharacterized protein related to capsule biosynthesis enzymes General function prediction only 116255667 Common - hypothetical protein pRL110466 25 None None None 116255512 Common cls putative transmembrane cardiolipin synthetase pRL110313 150 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 116255309 Nonpathogen - hypothetical protein pRL110109 1 None None None 116255602 Common - putative ATP-binding component of ABC transporter protein pRL110401 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 116255670 Nonpathogen - hypothetical protein pRL110469 2 None None None 116255674 Common - putative transmembrane protein pRL110473 8 COG3238 COG3238, Uncharacterized protein conserved in bacteria Function unknown 116255785 Common - putative integrase/recombinase protein pRL110584 221 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 116255679 Common - putative ABC transporter component pRL110478 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 116255284 Common gno gluconate 5-dehydrogenase pRL110084 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 116255419 Common - hypothetical protein pRL110218 20 None None None 116255805 Common - putative trifolitoxin related protein pRL110604 25 COG3482 COG3482, Uncharacterized conserved protein Function unknown 116255621 Common - putative IclR family transcriptional regulator pRL110420 108 COG1414 IclR, Transcriptional regulator Transcription 116255543 Common - putative phage integrase/recombinase pRL110345 43 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 116255286 Common pcaG putative protocatechuate 3,4-dioxygenase alpha chain pRL110086 39 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 116255772 Nonpathogen - hypothetical protein pRL110571 1 COG3745 CpaB, Flp pilus assembly protein CpaB Intracellular trafficking and secretion 116255400 Common - hypothetical protein pRL110199 8 None None None 116255821 Common - putative pantothenate biosynthesis protein pRL110619 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 116255427 Common - putative transmembrane acid phosphatase pRL110226 81 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 116255639 Common - putative substrate-binding component of ABC transporter pRL110438 187 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 116255510 Common - hypothetical protein pRL110311 7 None None None 116255799 Common - putative racemase pRL110598 82 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 116255685 Common - putative dienelactone hydrolase family protein pRL110484 113 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 116255517 Nonpathogen - hypothetical protein pRL110317A 1 None None None 116255501 Nonpathogen - putative transmembrane protein pRL110301 1 None None None 116255272 Common - putative GntR family transcriptional regulator pRL110072 123 COG1802 GntR, Transcriptional regulators Transcription 116255302 Common - hypothetical protein pRL110103 2 None None None 116255612 Common rhaP putative substrate-binding component of ABC transporter involved in competition for nodulation pRL110411 102 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 116255693 Nonpathogen - hypothetical protein pRL110492 10 None None None 116255698 Nonpathogen - hypothetical protein pRL110497 1 None None None 116255508 Common - hypothetical protein pRL110309 16 None None None 116255727 Nonpathogen - hypothetical protein pRL110526 1 None None None 116255391 Nonpathogen - putative transmembrane protein pRL110190 2 None None None 116255529 Nonpathogen - hypothetical protein pRL110329 2 None None None 116255218 Common - putative transmembrane major facilitator subfamily transporter protein pRL110018 225 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 116255255 Common - putative adenylate cyclase pRL110055 69 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 116255249 Common - putative glycosyl transferase pRL110049 140 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 116255651 Common - putative permease component of ABC transporter pRL110450 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255444 Common - putative substrate-binding component of ABC transporter pRL110243 119 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 116255337 Common cpo putative non-heme chloroperoxidase pRL110136 86 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 116255567 Common - putative permease component of ABC transporter pRL110366 191 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 116255750 Common - hypothetical protein pRL110549 21 None None None 116255226 Common - putative LysR family transcriptional regulator pRL110026 190 COG0583 LysR, Transcriptional regulator Transcription 116255493 Common hycE putative formate hydrogenlyase subunit 5 precursor pRL110293 192 COG3261 HycE, Ni,Fe-hydrogenase III large subunit Energy production and conversion 116255534 Common - putative glycosyltransferase pRL110335 43 COG1819 COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase Carbohydrate transport and metabolism / Signal transduction mechanisms 116255405 Common - putative formiminoglutamase pRL110204 57 COG3741 HutG, N-formylglutamate amidohydrolase Amino acid transport and metabolism 116255769 Nonpathogen - putative transmembrane protein pRL110568 1 None None None 116255586 Common - putative transmembrane protein pRL110385 7 COG3918 COG3918, Predicted membrane protein Function unknown 116255485 Common - putative acid phosphatase pRL110285 35 COG3511 PlcC, Phospholipase C Cell envelope biogenesis, outer membrane 116255658 Common - hypothetical protein pRL110457 91 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 116255753 Common - putative aminomethyltransferase/glycine cleavage protein pRL110552 178 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 116255376 Common - hypothetical protein pRL110176 71 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 116255364 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase pRL110164 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 116255613 Common rhaT putative ABC transporter component involved in competition for nodulation pRL110412 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 116255603 Common - putative ATP-binding component of ABC transporter pRL110402 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 116255700 Common - hypothetical protein pRL110499 32 COG5476 COG5476, Uncharacterized conserved protein Function unknown 116255745 Common minE cell division topological specificity factor MinE pRL110544 71 COG0851 MinE, Septum formation topological specificity factor Cell division and chromosome partitioning 116255709 Common - putative zinc-binding oxidoreductase pRL110508 181 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 116255455 Common - putative adenylate cyclase pRL110256 59 COG3899 COG3899, Predicted ATPase General function prediction only 116255449 Common - putative transmembrane protein pRL110248 186 COG0628 PerM, Predicted permease General function prediction only 116255792 Common - putative outer membrane protein pRL110591 91 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 116255412 Common - putative substrate-binding component of ABC transporter pRL110211 140 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 116255237 Common - putative two component fused sensor/regulator transcriptional regulator pRL110037 214 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 116255201 Common repA putative replication protein A pRL110001 193 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 116255593 Nonpathogen - putative transmembrane protein pRL110392 2 None None None 116255353 Common ttuC putative tartrate dehydrogenase pRL110153 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 116255660 Common - putative ATP-binding component of ABC transporter pRL110459 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 116255711 Common - hypothetical protein pRL110510 132 COG1733 COG1733, Predicted transcriptional regulators Transcription 116255290 Common pcaQ putative LysR family transcriptional regulator PcaQ pRL110090 192 COG0583 LysR, Transcriptional regulator Transcription 116255728 Common - hypothetical protein pRL110527 40 COG3459 COG3459, Cellobiose phosphorylase Carbohydrate transport and metabolism 116255463 Nonpathogen - hypothetical protein pRL110263 4 None None None 116255289 Common - putative b-ketoadipate enol-lactone hydrolase pRL110089 172 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 116255575 Common - putative substrate-binding component of ABC transporter pRL110374 91 COG1613 Sbp, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 116255503 Common - putative 3-oxoacyl-[acyl-carrier-protein] (3-ketoacyl-acyl carrier protein reductase) pRL110303 235 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 116255548 Nonpathogen - hypothetical protein pRL110350 3 None None None 116255484 Common - putative methylamine utilization protein MauG precursor pRL110284 89 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 116255492 Common hycG putative formate hydrogenlyase subunit 7 pRL110292 192 COG3260 COG3260, Ni,Fe-hydrogenase III small subunit Energy production and conversion 116255499 Common - putative transmembrane transporter pRL110299 105 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 116255630 Common betC putative choline-sulfatase pRL110429 93 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 116255623 Nonpathogen - hypothetical protein pRL110422 1 None None None 116255767 Nonpathogen - putative transmembrane pilus assembly protein pRL110566 1 COG4960 CpaA, Flp pilus assembly protein, protease CpaA Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 116255738 Common - putative MarR family transcriptional regulator pRL110537 74 COG1846 MarR, Transcriptional regulators Transcription 116255417 Nonpathogen - hypothetical protein pRL110216 1 None None None 116255436 Common - putative HlyD family protein pRL110235 158 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 116255262 Common - hypothetical protein pRL110062 122 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 116255387 Common - hypothetical protein pRL110186 41 COG4949 COG4949, Uncharacterized membrane-anchored protein conserved in bacteria Function unknown 116255541 Common - hypothetical protein pRL110343 8 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 116255712 Common - putative glycosyl hydrolase pRL110511 43 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 116255672 Common - putative flavoprotein/ferredoxin pRL110471 145 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 116255475 Common - putative mobilization protein MobS pRL110275 2 None None None 116255600 Nonpathogen - hypothetical protein pRL110399 1 None None None 116255380 Common - hypothetical protein pRL110180 66 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 116255313 Nonpathogen - hypothetical protein pRL110113 1 None None None 116255649 Common - puative substrate-binding ABC transporter protein pRL110448 209 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 116255561 Nonpathogen - hypothetical protein pRL110360 1 None None None 116255759 Common - putative transcriptional regulator pRL110558 121 COG1396 HipB, Predicted transcriptional regulators Transcription 116255619 Common - putative alternative RNA polymerase sigma factor pRL110418 80 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 116255565 Common - putative substrate-binding component of ABC transporter pRL110364 119 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 116255703 Common - putative HTH-type transcriptional regulator pRL110502 92 COG1737 RpiR, Transcriptional regulators Transcription 116255656 Common - putative substrate-binding component of ABC transporter pRL110455 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255374 Common - putative 3-oxoacyl-[acyl-carrier-protein] reductase pRL110174 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 116255215 Common - hypothetical protein pRL110015 54 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 116255339 Nonpathogen - hypothetical protein pRL110138 3 None None None 116255737 Common - haloalkane dehalogenase pRL110536 129 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 116255831 Common cobI precorrin-2 C(20)-methyltransferase pRL110629 171 COG2243 CobF, Precorrin-2 methylase Coenzyme metabolism 116255531 Common - putative copper-transporting P-type ATPase pRL110331 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 116255220 Common - hypothetical protein pRL110020 96 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 116255536 Common - putative potassium transport system protein pRL110337 89 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 116255209 Common - putative MerR family copper export transcriptional regulator pRL110009 139 COG0789 SoxR, Predicted transcriptional regulators Transcription 116255304 Common - putative LysR family transcriptional regulator pRL110105 192 COG0583 LysR, Transcriptional regulator Transcription 116255526 Nonpathogen - hypothetical protein pRL110326 1 None None None 116255242 Common cyoA putative ubiquinol oxidase polypeptide II precursor pRL110042 119 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 116255684 Common - putative MmgE/PrpD family protein pRL110483 55 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 116255610 Common rhaU putative protein involved in competition for nodulation pRL110409 40 COG3254 COG3254, Uncharacterized conserved protein Function unknown 116255764 Common soxG putative sarcosine oxidase gamma subunit pRL110563 5 COG4583 COG4583, Sarcosine oxidase gamma subunit Amino acid transport and metabolism 116255521 Common - hypothetical protein pRL110321 3 None None None 116255770 Nonpathogen - putative transmembrane protein pRL110569 1 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 116255324 Common - putative transmembrane nitrile hydratase pRL110123 5 None None None 116255778 Common - putative LysR family transcriptional regulator pRL110577 151 COG0583 LysR, Transcriptional regulator Transcription 116255345 Common - hypothetical protein pRL110145 60 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 116255422 Common - putative arylsulfatase pRL110221 74 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 116255629 Common - hypothetical protein pRL110428 5 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 116255803 Common - putative HTH family transcriptional regulator pRL110602 39 COG1396 HipB, Predicted transcriptional regulators Transcription 116255487 Common pcaI putative 3-oxoadipate CoA-transferase subunit A pRL110287 100 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 116255744 Nonpathogen - hypothetical protein pRL110543 1 None None None 116255265 Common - hypothetical protein pRL110065 21 None None None 116255662 Common - putative glutathione-S-transferase protein pRL110461 62 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 116255598 Common - putative beta-mannosidase pRL110397 17 COG3934 COG3934, Endo-beta-mannanase Carbohydrate transport and metabolism 116255434 Common - putative permease component of ABC transporter pRL110233 97 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 116255280 Common - putative GFO/IDH/MOCA family oxidoreductase protein pRL110080 176 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 116255381 Common - hypothetical protein pRL110181 61 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 116255273 Common - putative GntR family transcriptional regulator pRL110073 118 COG1802 GntR, Transcriptional regulators Transcription 116255362 Common gyaR putative glyoxylate reductase pRL110162 230 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 116255780 Common - putative transmembrane protein pRL110579 27 None None None 116255355 Common - putative short-chain dehydrogenase/reductase pRL110155 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 116255494 Common hyfF hydrogenase 4 subunit F pRL110294 210 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 116255789 Common - putative exported serine protease inhibitor pRL110588 24 COG4826 COG4826, Serine protease inhibitor Posttranslational modification, protein turnover, chaperones 116255549 Nonpathogen - hypothetical protein pRL110351 1 None None None 116255230 Common - putative HTH transcriptional regulator pRL110030 126 COG1609 PurR, Transcriptional regulators Transcription 116255762 Common soxD putative sarcosine oxidase delta subunit pRL110561 35 COG4311 SoxD, Sarcosine oxidase delta subunit Amino acid transport and metabolism 116255206 Common - hypothetical protein pRL110006 16 COG5662 COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) Transcription 116255349 Common - putative isomerase pRL110149 83 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 116255591 Common - putative glycosyltransferase pRL110390 187 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 116255393 Common - hypothetical protein pRL110192 60 COG3550 HipA, Uncharacterized protein related to capsule biosynthesis enzymes General function prediction only 116255229 Common - putative ferredoxin pRL110029 146 COG4231 COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Energy production and conversion 116255714 Common - putative ATP-binding component of ABC transporter pRL110513 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 116255585 Common - mercuric reductase pRL110384 243 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 116255642 Common thiD putative phosphomethylpyrimidine kinase pRL110441 219 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 116255515 Common - putative exported carboxylesterase pRL110316 65 COG2272 PnbA, Carboxylesterase type B Lipid metabolism 116255311 Common - hypothetical protein pRL110111 52 COG2984 COG2984, ABC-type uncharacterized transport system, periplasmic component General function prediction only 116255459 Common - hypothetical protein pRL110259 64 COG3865 COG3865, Uncharacterized protein conserved in bacteria Function unknown 116255704 Common - short chain dehydrogenase pRL110503 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 116255453 Common - hypothetical protein pRL110254 25 COG3482 COG3482, Uncharacterized conserved protein Function unknown 116255447 Common - putative ATP-binding component of ABC transporter pRL110246 249 COG4172 COG4172, ABC-type uncharacterized transport system, duplicated ATPase component General function prediction only 116255790 Common - putative exported protease/peptidase pRL110589 43 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 116255609 Common rhaK putative L-xylulose kinase involved in competition for nodulation pRL110408 42 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 116255725 Common - putative exonuclease pRL110524 21 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 116255741 Common - putative permease protein pRL110540 57 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 116255576 Common ropA putative outer membrane porin protein pRL110375 13 None None None 116255640 Common - putative glycosyl transferase pRL110439 169 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 116255480 Common - putative permease component of ABC transporter pRL110280 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255734 Common - DNA polymerase III subunit epsilon pRL110533 60 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 116255552 Common - hypothetical protein pRL110353 3 None None None 116255533 Nonpathogen - hypothetical protein pRL110333 3 COG3678 CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism 116255222 Common - putative permease component of ABC transporter pRL110022 157 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 116255581 Common kdpB potassium-transporting ATPase subunit B pRL110380 232 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism 116255490 Common - putative acetyltransferase pRL110290 36 COG0456 RimI, Acetyltransferases General function prediction only 116255677 Common - putative substrate-binding component of ABC transporter pRL110476 193 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 116255563 Common - putative GntR family transcription regulator pRL110362 135 COG2186 FadR, Transcriptional regulators Transcription 116255617 Common rhaI putative rhamnose isomerase involved in competition for nodulation pRL110416 29 COG4952 COG4952, Predicted sugar isomerase Cell envelope biogenesis, outer membrane 116255431 Common - hypothetical protein pRL110230 58 COG3550 HipA, Uncharacterized protein related to capsule biosynthesis enzymes General function prediction only 116255654 Common - hypothetical protein pRL110453 26 COG3506 COG3506, Uncharacterized conserved protein Function unknown 116255757 Common glxC putative glutamate synthase subunit pRL110556 61 COG0070 GltB, Glutamate synthase domain 3 Amino acid transport and metabolism 116255497 Common hyfB hydrogenase 4 subunit B pRL110297 210 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 116255801 Common - putative IclR family transcriptional regulator protein pRL110600 88 COG1414 IclR, Transcriptional regulator Transcription 116255293 Common - hypothetical protein pRL110093 37 COG3571 COG3571, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 116255321 Common - hypothetical protein pRL110120 2 None None None 116255299 Common - hypothetical protein pRL110100 15 None None None 116255326 Common - putative low-molecular weight cobalt-containing nitrile hydratase subunit beta pRL110125 16 None None None 116255637 Common - putative permease component of ABC transporter pRL110436 219 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255776 Nonpathogen - putative transmembrane protein pRL110575 2 COG1716 COG1716, FOG: FHA domain Signal transduction mechanisms 116255343 Common - putative insertion sequence protein pRL110143 125 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 116255680 Common - putative transmembrane component of ABC transporter pRL110479 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255784 Common - putative transposase for insertion sequence element pRL110583 32 None None None 116255424 Common - putative two-component response regulator transcriptional regulator pRL110223 216 COG4566 TtrR, Response regulator Signal transduction mechanisms 116255795 Nonpathogen - hypothetical protein pRL110594 1 None None None 116255416 Common hutH2 putative histidine ammonia-lyase pRL110215 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 116255294 Nonpathogen - putative transmembrane protein pRL110095 3 None None None 116255429 Nonpathogen - putative transmembrane protein pRL110228 1 None None None 116255478 Common - putative ATP-binding component of ABC transporter pRL110278 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255815 Common - hypothetical protein pRL110614 117 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 116255316 Common - putative DNA Ligase pRL110115 101 COG1793 CDC9, ATP-dependent DNA ligase DNA replication, recombination, and repair 116255505 Common - putative topoisomerase I pRL110305 45 COG3569 COG3569, Topoisomerase IB DNA replication, recombination, and repair 116255334 Common - putative adenylate cyclase/transcriptional regulator pRL110133 62 COG3903 COG3903, Predicted ATPase General function prediction only 116255525 Common - hypothetical protein pRL110325 7 None None None 116255379 Common - putative calcium-binding protein pRL110179 65 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 116255276 Common - putative 3-dehydroquinate dehydratase pRL110076 170 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 116255539 Common - putative transposase for insertion sequence element pRL110341 31 None None None 116255306 Common - hypothetical protein pRL110107 63 COG1273 COG1273, Uncharacterized conserved protein Function unknown 116255689 Common - putative substrate-binding protein of ABC transporter pRL110488 125 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 116255686 Common - putative GFO/IDH/MocA family oxidoreductase protein pRL110485 148 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 116255466 Common - putative succinoglycan biosynthesis protein pRL110266 65 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 116255545 Common - hypothetical protein pRL110347 6 None None None 116255496 Common hycD putative hydrogenase protein pRL110296 77 COG0650 HyfC, Formate hydrogenlyase subunit 4 Energy production and conversion 116255274 Common - putative dioxygenase pRL110074 87 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 116255578 Common kdpE putative Kdp operon transcriptional regulatory protein pRL110377 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 116255547 Nonpathogen - hypothetical protein pRL110349 1 None None None 116255694 Common - hypothetical protein pRL110493 18 None None None 116255824 Common - putative transmembrane fatty acid desaturase pRL110622 26 COG3239 DesA, Fatty acid desaturase Lipid metabolism 116255440 Common - hypothetical protein pRL110239 16 COG1396 HipB, Predicted transcriptional regulators Transcription 116255245 Common - hypothetical protein pRL110045 18 COG3668 ParE, Plasmid stabilization system protein General function prediction only 116255664 Common - putative acetyltransferase pRL110463 102 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 116255204 Common - hypothetical protein pRL110004 8 None None None 116255372 Common - putative transmembrane protein pRL110172 75 COG3333 COG3333, Uncharacterized protein conserved in bacteria Function unknown 116255239 Common cyoD putative cytochrome o ubiquinol oxidase protein CyoD pRL110039 61 COG3125 CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 Energy production and conversion 116255347 Common - hypothetical protein pRL110147 29 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 116255782 Common - putative transposase-related protein pRL110581 78 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 116255596 Common - putative succinoglycan biosynthesis protein pRL110395 48 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 116255268 Common - hypothetical protein pRL110068 8 None None None 116255267 Common - putative glycosyltransferase pRL110067 139 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 116255550 Nonpathogen - hypothetical protein pRL110351A 1 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 116255383 Nonpathogen - hypothetical protein pRL110182 3 None None None 116255360 Common - putative LysR family transcriptional regulator pRL110160 188 COG0583 LysR, Transcriptional regulator Transcription 116255471 Common - putative WGR-family protein pRL110271 14 COG3831 COG3831, Uncharacterized conserved protein Function unknown 116255212 Common - putative penicillin-binding family protein pRL110012 200 COG4953 PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC Cell envelope biogenesis, outer membrane 116255409 Common - putative GntR family transcriptional regulator pRL110208 103 COG2188 PhnF, Transcriptional regulators Transcription 116255369 Common - putative substrate-binding component of ABC transporter pRL110169 88 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 116255558 Common - hypothetical protein pRL110357 3 None None None 116255571 Common - putative hydrolase pRL110370 23 COG3773 SleB, Cell wall hydrolyses involved in spore germination Cell envelope biogenesis, outer membrane 116255308 Nonpathogen - hypothetical protein pRL110108A 3 None None None 116255706 Common - putative transcriptional regulator pRL110505 160 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 116255318 Nonpathogen - hypothetical protein pRL110117 2 None None None 116255607 Common - putative 3-hydroxyisobutyrate dehydrogenase pRL110406 171 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 116255732 Nonpathogen - hypothetical protein pRL110531 1 None None None 116255624 Common - putative TetR family transcriptional regulator pRL110423 68 COG1309 AcrR, Transcriptional regulator Transcription 116255826 Common - hypothetical protein pRL110624 16 COG4130 COG4130, Predicted sugar epimerase Carbohydrate transport and metabolism 116255282 Common - putative TetR family transcriptional regulator pRL110082 79 COG1309 AcrR, Transcriptional regulator Transcription 116255232 Common - putative transmembrane protein pRL110032 2 None None None 116255452 Common - hypothetical protein pRL110253 6 None None None 116255445 Common - putative permease component of ABC transporter pRL110244 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255250 Common - hypothetical protein pRL110050 21 COG4671 COG4671, Predicted glycosyl transferase General function prediction only 116255357 Nonpathogen - hypothetical protein pRL110157 1 None None None 116255404 Common - urocanate hydratase pRL110203 97 COG2987 HutU, Urocanate hydratase Amino acid transport and metabolism 116255395 Nonpathogen - hypothetical protein pRL110193A 1 None None None 116255583 Common - putative D-xylulose reductase pRL110382 172 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 116255797 Common - putative transmembrane protein pRL110596 10 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 116255614 Common rhaS putative substrate binding protein involved in competition for nodulation pRL110413 94 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 116255462 Nonpathogen - putative transmembrane protein pRL110262 4 None None None 116255402 Common - putative chaperone pRL110201 223 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 116255661 Common - putative intracellular PHB depolymerase pRL110460 44 COG4553 DepA, Poly-beta-hydroxyalkanoate depolymerase Lipid metabolism 116255248 Common - hypothetical protein pRL110048 19 COG4671 COG4671, Predicted glycosyl transferase General function prediction only 116255606 Common - putative alcohol dehydrogenase pRL110405 95 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 116255793 Nonpathogen - hypothetical protein pRL110592 1 None None None 116255668 Common - putative transmembrane protein pRL110467 6 COG4711 COG4711, Predicted membrane protein Function unknown 116255708 Common - putative AraC family transcriptional regulator pRL110507 136 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 116255457 Nonpathogen - hypothetical protein pRL110257B 1 None None None 116255540 Nonpathogen - hypothetical protein pRL110342 1 None None None 116255601 Common - putative substrate-binding component of ABC transporter pRL110400 71 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 116255820 Common - hypothetical protein pRL110618 44 COG4111 COG4111, Uncharacterized conserved protein General function prediction only 116255285 Common - 3-carboxy-cis,cis-muconate cycloisomerase pRL110085 160 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 116255336 Common - putative tautomerase pRL110135 7 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 116255253 Common - putative substrate-binding component of ABC transporter pRL110053 95 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 116255314 Nonpathogen - hypothetical protein pRL110113A 1 None None None 116255594 Nonpathogen - hypothetical protein pRL110393 1 None None None 116255399 Nonpathogen - hypothetical protein pRL110198 1 None None None 116255386 Common - putative transmembrane adenylate cyclase pRL110185 89 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 116255678 Common - hypothetical protein pRL110477 23 COG2367 PenP, Beta-lactamase class A Defense mechanisms 116255498 Common - putative thiolase pRL110298 73 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 116255261 Common - hypothetical protein pRL110061 59 COG1959 COG1959, Predicted transcriptional regulator Transcription 116255370 Common - putative alcohol dehydrogenase pRL110170 209 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 116255717 Common - putative permease component of ABC transporter pRL110516 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255350 Common - putative aldolase pRL110150 147 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 116255513 Common - putative endonuclease/exonuclease/phosphatase family protein pRL110314 72 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 116255233 Common - putative ATP-binding component of ABC transporter pRL110033 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 116255579 Common kdpD putative two-component sensor histidine kinase potassium transport regulator protein pRL110378 220 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 116255829 Common cobK cobalt-precorrin-6x reductase pRL110627 44 COG2099 CobK, Precorrin-6x reductase Coenzyme metabolism 116255331 Nonpathogen - hypothetical protein pRL110130 1 None None None 116255491 Nonpathogen - hypothetical protein pRL110291 4 None None None 116255411 Common hutC putative histidine utilization transcriptional regulator pRL110210 122 COG2188 PhnF, Transcriptional regulators Transcription 116255572 Common - putative ATP-binding component of ABC transporter pRL110371 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 116255722 Nonpathogen - hypothetical protein pRL110521 2 None None None 116255435 Common - putative permease component of ABC transporter pRL110234 55 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 116255699 Common - hypothetical protein pRL110498 65 COG3616 COG3616, Predicted amino acid aldolase or racemase Amino acid transport and metabolism 116255633 Common - putative 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase pRL110432 74 COG3836 HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Carbohydrate transport and metabolism 116255786 Nonpathogen - hypothetical protein pRL110585 1 None None None 116255589 Common - putative LysR family transcription regulator pRL110388 169 COG0583 LysR, Transcriptional regulator Transcription 116255673 Common - putative G/U mismatch-specific DNA glycosylase pRL110472 29 COG3663 Mug, G:T/U mismatch-specific DNA glycosylase DNA replication, recombination, and repair 116255696 Common - putative transmembrane protein pRL110495 22 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 116255500 Common - hypothetical protein pRL110300 15 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 116255210 Common - putative copper-transporting p-type ATPase pRL110010 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 116255481 Common - putative substrate-binding component of ABC transporter pRL110281 126 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 116255377 Common - putative IclR family transcriptional regulator pRL110177 106 COG1414 IclR, Transcriptional regulator Transcription 116255522 Common - putative transmembrane protein pRL110322 10 None None None 116255441 Common - putative methyltransferase pRL110240 44 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 116255322 Common - hypothetical protein pRL110121 16 COG5446 COG5446, Predicted integral membrane protein Function unknown 116255814 Common - putative ATP-binding component of ABC transporter pRL110613 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 116255428 Nonpathogen - putative transmembrane protein pRL110227 4 COG4280 COG4280, Predicted membrane protein Function unknown 116255690 Common - putative ATP-binding component of ABC transporter pRL110489 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 116255808 Common - putative transposase family protein pRL110607 75 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 116255397 Nonpathogen - hypothetical protein pRL110195 1 None None None 116255638 Common - putative permease component of ABC transporter pRL110437 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255327 Common - putative transmembrane protein pRL110126 8 None None None 116255646 Common - putative peptidase/protease pRL110445 71 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 116255626 Common - hypothetical protein pRL110425 28 COG5579 COG5579, Uncharacterized conserved protein Function unknown 116255707 Common - putative transmembrane protein pRL110506 64 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 116255278 Common - putative permease component of ABC transporter pRL110078 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 116255775 Common - putative transmembrane pilus component protein pRL110574 29 COG4965 TadB, Flp pilus assembly protein TadB Intracellular trafficking and secretion 116255342 Nonpathogen - hypothetical protein pRL110142 2 None None None 116255666 Common - hypothetical protein pRL110465 27 COG5606 COG5606, Uncharacterized conserved small protein Function unknown 116255580 Common kdpC putative potassium-transporting ATPase c chain pRL110379 95 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 116255751 Common - putative dioxygenase beta subunit pRL110550 105 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 116255568 Common - putative ATP-binding component of ABC transporter pRL110367 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 116255438 Common - hypothetical protein pRL110238 2 None None None 116255227 Common - putative amidohydrolase pRL110027 124 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 116255367 Common - putative permease component of ABC transporter pRL110167 122 COG4214 XylH, ABC-type xylose transport system, permease component Carbohydrate transport and metabolism 116255833 Common cobG putative precorrin-3b synthase pRL110631 41 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 116255277 Common - putative permease component of ABC transporter pRL110077 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 116255225 Common caiD putative carnitinyl-CoA dehydratase pRL110025 185 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 116255754 Common purU formyltetrahydrofolate deformylase pRL110553 218 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 116255468 Nonpathogen - hypothetical protein pRL110268 3 None None None 116255616 Common rhaD short chain dehydrogenase pRL110415 234 COG3347 COG3347, Uncharacterized conserved protein Function unknown 116255535 Nonpathogen - hypothetical protein pRL110336 1 None None None 116255652 Common - putative transcriptional regulator pRL110451 40 COG3707 AmiR, Response regulator with putative antiterminator output domain Signal transduction mechanisms 116255297 Common hsdM putative type I restriction enzyme pRL110098 160 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 116255359 Common - hypothetical protein pRL110159 19 COG4925 COG4925, Uncharacterized conserved protein Function unknown 116255234 Common - putative ATP-binding component of ABC transporter pRL110034 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 116255507 Common - hypothetical protein pRL110308 15 None None None 116255768 Nonpathogen - putative transmembrane protein pRL110567 1 None None None 116255247 Common - putative transmembrane ABC transporter component pRL110047 236 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 116255555 Nonpathogen - hypothetical protein pRL110354B 1 None None None 116255219 Common - putative transmembrane transporter pRL110019 122 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 116255761 Common soxB putative sarcosine oxidase subunit pRL110560 132 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 116255752 Common - hypothetical protein pRL110551 12 None None None 116255408 Common - N-formimino-L-glutamate deiminase pRL110207 120 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 116255604 Common - putative permease component of ABC transporter pRL110403 147 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 116255464 Nonpathogen - putative transmembrane protein pRL110264 2 None None None 116255258 Common - putative adenylyl cyclase pRL110058 14 None None None 116255746 Common minD putative septum site-determining protein MinD pRL110545 137 COG2894 MinD, Septum formation inhibitor-activating ATPase Cell division and chromosome partitioning 116255720 Common - putative multidrug resistance transporter pRL110519 194 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 116255788 Common - putative transmembrane protein pRL110587 31 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 116255241 Common cyoB putative ubiquinol oxidase polypeptide I pRL110041 167 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 116255502 Nonpathogen - putative transmembrane protein pRL110302 3 None None None 116255363 Common - hypothetical protein pRL110163 64 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 116255433 Common - putative transmembrane cyclic nucleotide-binding ion channel pRL110232 197 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 116255518 Nonpathogen - hypothetical protein pRL110318 1 None None None 116255719 Common - putative flagellin protein pRL110518 126 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 116255312 Common - putative transcriptional regulator adenylate cyclase pRL110112 98 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 116255450 Nonpathogen - hypothetical protein pRL110251 1 None None None 116255739 Common - putative amino oxidase pRL110538 22 COG1231 COG1231, Monoamine oxidase Amino acid transport and metabolism 116255236 Common - hypothetical protein pRL110036 30 COG4529 COG4529, Uncharacterized protein conserved in bacteria Function unknown 116255701 Common - hypothetical protein pRL110500 7 None None None 116255729 Common - putative GntR family transcriptional regulator pRL110528 136 COG2186 FadR, Transcriptional regulators Transcription 116255812 Common - putative flavonol synthase/dioxygenase pRL110611 54 COG3491 PcbC, Isopenicillin N synthase and related dioxygenases General function prediction only 116255256 Common - putative O-antigen related protein pRL110056 203 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 116255819 Common nadA quinolinate synthetase pRL110617 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 116255392 Common - putative transmembrane protein pRL110191 90 COG0730 COG0730, Predicted permeases General function prediction only 116255730 Common - putative 2-deoxy-D-gluconate 3-dehydrogenase pRL110529 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 116255418 Common - hypothetical protein pRL110217 20 None None None 116255528 Common - hypothetical protein pRL110328 41 None None None 116255710 Common - short chain dehydrogenase pRL110509 238 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 116255511 Common - putative uracil-DNA glycosylase pRL110312 144 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 116255301 Common - hypothetical protein pRL110102 28 COG3440 COG3440, Predicted restriction endonuclease Defense mechanisms 116255474 Common - putative transmembrane traG transfer-related protein pRL110274 59 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 116255287 Common pcaH putative protocatechuate 3,4-dioxygenase beta chain pRL110087 54 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 116255822 Common - putative pyridine-nucleotide disulphide oxidoreductase pRL110620 241 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 116255599 Nonpathogen - hypothetical protein pRL110398 1 None None None 116255264 Common - hypothetical protein pRL110064 29 None None None 116255663 Common - hypothetical protein pRL110462 33 COG3257 GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization General function prediction only 116255592 Common - putative phosphatidylinositol alpha-mannosyltransferase pRL110391 125 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 116255263 Common - hypothetical protein pRL110063 24 None None None 116255766 Nonpathogen - putative transmembrane protein pRL110565 1 None None None 116255388 Nonpathogen - hypothetical protein pRL110187 1 None None None 116255216 Nonpathogen - hypothetical protein pRL110016 1 None None None 116255352 Common - putative oxidoreductase/dehydrogenase pRL110152 171 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 116255202 Common repB putative replication protein B pRL110002 97 COG1475 Spo0J, Predicted transcriptional regulators Transcription 116255713 Common - hypothetical protein pRL110512 13 COG3153 COG3153, Predicted acetyltransferase General function prediction only 116255329 Nonpathogen - hypothetical protein pRL110128 1 None None None 116255806 Common - hypothetical protein pRL110605 48 COG1944 COG1944, Uncharacterized conserved protein Function unknown 116255620 Common - dihydroorotase pRL110419 29 COG3964 COG3964, Predicted amidohydrolase General function prediction only 116255743 Common cspA putative cold shock protein pRL110542 176 COG1278 CspC, Cold shock proteins Transcription 116255791 Common - hypothetical protein pRL110590 17 None None None 116255340 Common - putative oxidoreductase pRL110139 83 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 116255809 Nonpathogen - hypothetical protein pRL110608 1 None None None 116255692 Common - putative choline dehydrogenase pRL110491 86 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 116255375 Common - putative aldehyde dehydrogenase pRL110175 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 116255726 Nonpathogen - hypothetical protein pRL110525 1 None None None 116255509 Common - putative two component sensor kinase/response regulator pRL110310 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 116255390 Nonpathogen - hypothetical protein pRL110189 1 None None None 116255483 Common - putative DNA-binding protein pRL110283 10 COG4189 COG4189, Predicted transcriptional regulator Transcription 116255516 Nonpathogen - hypothetical protein pRL110317 1 None None None 116255675 Common - putative transmembrane protein pRL110474 14 COG3238 COG3238, Uncharacterized protein conserved in bacteria Function unknown 116255587 Common - putative acyl-CoA dehydrogenase pRL110386 158 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 116255631 Common - putative LysR family transcriptional regulator pRL110430 108 COG0583 LysR, Transcriptional regulator Transcription 116255271 Common - hypothetical protein pRL110071 50 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 116255644 Common thiM putative hydroxyethylthiazole kinase pRL110443 77 COG2145 ThiM, Hydroxyethylthiazole kinase, sugar kinase family Coenzyme metabolism 116255291 Common - hypothetical protein pRL110091 26 None None None 116255469 Common - putative GGDEF family regulator pRL110269 177 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 116255817 Common nadC nicotinate-nucleotide pyrophosphorylase pRL110615 204 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 116255650 Common - putative permease component of ABC transporter pRL110449 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255557 Nonpathogen - hypothetical protein pRL110356 1 None None None 116255628 Common - hypothetical protein pRL110427 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 116255574 Common - putative permease component of ABC transporter pRL110373 239 COG0555 CysU, ABC-type sulfate transport system, permease component Posttranslational modification, protein turnover, chaperones 116255773 Common - putative flp pilus assembly protein pRL110572 160 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 116255659 Common - hypothetical protein pRL110458 74 COG1921 SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] Amino acid transport and metabolism 116255338 Common - putative cyclase/dehydrase pRL110137 91 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 116255537 Nonpathogen - hypothetical protein pRL110338 1 None None None 116255254 Common - putative ATP-binding component of ABC transporter pRL110054 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 116255566 Common - putative permease component of ABC transporter pRL110365 181 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 116255810 Common - cytosine deaminase pRL110609 67 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 116255365 Common - hypothetical protein pRL110165 61 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 116255460 Nonpathogen - hypothetical protein pRL110260A 1 None None None 116255443 Common - putative alpha-galactosidase pRL110242 54 COG1486 CelF, Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases Carbohydrate transport and metabolism 116255389 Nonpathogen - putative transmembrane protein pRL110188 1 None None None 116255310 Nonpathogen - hypothetical protein pRL110110 1 None None None 116255346 Common - putative FUR family transcriptional regulator pRL110146 124 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 116255207 Common - RNA polymerase sigma factor pRL110007 169 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 116255382 Nonpathogen - hypothetical protein pRL110181A 1 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 116255590 Common - putative exopolysaccharide production protein pRL110389 34 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 116255477 Common - putative ATP-binding component of ABC transporter pRL110277 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 116255266 Common - putative adenylate cyclase pRL110066 82 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 116255281 Common - putative shikimate 5-dehydrogenase pRL110081 175 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 116255319 Nonpathogen - hypothetical protein pRL110118 1 None None None 116255825 Common - putative transcriptional regulator pRL110623 65 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 116255546 Nonpathogen - hypothetical protein pRL110348 2 None None None 116255781 Common - putative insertion sequence/transposase-related protein pRL110580 61 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 116255243 Common - putative transmembrane transporter protein pRL110043 130 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 116255544 Common - putative phage integrase/recombinase pRL110346 167 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 116255288 Common pcaC putative carboxymuconolactone decarboxylase pRL110088 90 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 116255325 Common - putative cobalt-containing nitrile hydratase subunit alpha pRL110124 21 None None None 116255495 Common hyfE putative hydrogenase-4 component E pRL110295 35 COG4237 HyfE, Hydrogenase 4 membrane component (E) Energy production and conversion 116255228 Common - putative dihydrodipicolinate synthase pRL110028 208 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 116255798 Common - putative exported peptidase pRL110597 102 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 116255476 Common traA putative conjugal transfer protein TraA pRL110276 113 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 116255665 Common - hypothetical protein pRL110464 23 COG4679 COG4679, Phage-related protein Function unknown 116255705 Common - putative transmembrane efflux transporter pRL110504 29 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 116255214 Common - methionine sulfoxide reductase A pRL110014 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 116255354 Common - putative aldehyde dehydrogenase pRL110154 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 116255348 Common - putative 2-hydroxy-3-oxopropionate reductase pRL110148 160 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 116255361 Common - putative aldehyde dehydrogenase pRL110161 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 116255622 Common - putative oxidoreductase/stress-related protein pRL110421 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 116255394 Common - putative DNA binding protein pRL110193 13 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 116255735 Common - putative two-component sensor kinase regulator pRL110534 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 116255742 Common - putative glycine degradation aminomethyltransferase pRL110541 181 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 116255818 Common nadB L-aspartate oxidase pRL110616 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 116255456 Nonpathogen - hypothetical protein pRL110257A 2 None None None 116255465 Common - putative outer membrane protein pRL110265 6 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 116255564 Common - hypothetical protein pRL110363 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 116255292 Common - hypothetical protein pRL110092 25 None None None 116255584 Common - putative transmembrane protein pRL110383 113 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 116255448 Common - putative alpha-galactosidase pRL110247 54 COG1486 CelF, Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases Carbohydrate transport and metabolism 116255758 Common glxB putative glutamine amidotransferase protein pRL110557 237 COG0067 GltB, Glutamate synthase domain 1 Amino acid transport and metabolism 116255530 Common hmrR putative MerR family heavy metal dependent transcriptional regulator pRL110330 141 COG0789 SoxR, Predicted transcriptional regulators Transcription 116255560 Common - putative single domain response regulator two component transcriptional regulator pRL110359 142 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 116255551 Common - putative transposase pRL110352 107 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 116255611 Common rhaQ putative permease component of ABC transporter involved in competition for nodulation pRL110410 108 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 116255779 Common - putative 4-oxalocrotonate tautomerase pRL110578 22 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 116255736 Common - putative two-component response regulator pRL110535 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 116255608 Common - hypothetical protein pRL110407 7 COG3971 COG3971, 2-keto-4-pentenoate hydratase Secondary metabolites biosynthesis, transport, and catabolism 116255221 Common - putative ATP-binding component of ABC transporter pRL110021 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 116255257 Nonpathogen - hypothetical protein pRL110057 1 None None None 116255643 Common thiE putative thiamine-phosphate pyrophosphorylase pRL110442 201 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 116255657 Common - putative transmembrane component of ABC transporter pRL110456 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255208 Nonpathogen - hypothetical protein pRL110008 1 None None None 116255765 Common - putative tight adherence protein pRL110564 160 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 116255695 Common - putative transmembrane protein pRL110494 5 None None None 116255538 Common - putative integrase/recombinase protein pRL110340 225 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 116255681 Common - putative permease component of ABC transporter pRL110480 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255520 Common - putative regulator pRL110320 94 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 116255687 Common - putative permease component of ABC transporter pRL110486 185 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 116255504 Common glgX putative glycosylhydrolase pRL110304 148 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 116255323 Common - putative transmembrane protein pRL110122 3 None None None 116255410 Common - hypothetical protein pRL110209 15 COG5397 COG5397, Uncharacterized conserved protein Function unknown 116255702 Common - putative ribonuclease pRL110501 177 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 116255636 Common - putative ATP-binding component of ABC transporter pRL110435 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255486 Common - putative IclR transcriptional regulatory protein pRL110286 120 COG1414 IclR, Transcriptional regulator Transcription 116255830 Common cobJ precorrin-3B C17-methyltransferase pRL110628 120 COG1010 CobJ, Precorrin-3B methylase Coenzyme metabolism 116255303 Nonpathogen - hypothetical protein pRL110104 1 None None None 116255406 Common hutH1 histidine ammonia-lyase pRL110205 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 116255771 Nonpathogen - hypothetical protein pRL110570 1 None None None 116255823 Common - putative rieske-type ferredoxin pRL110621 79 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 116255421 Common - putative exported acid phosphatase pRL110220 26 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 116255804 Nonpathogen - hypothetical protein pRL110603 1 None None None 116255315 Nonpathogen - hypothetical protein pRL110114 1 None None None 116255213 Common - hypothetical protein pRL110013 80 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 116255827 Common cobM putative precorrin-4 c(11)-methyltransferase pRL110625 199 COG2875 CobM, Precorrin-4 methylase Coenzyme metabolism 116255396 Nonpathogen - hypothetical protein pRL110194 1 None None None 116255489 Common pcaF beta-ketoadipyl CoA thiolase pRL110289 170 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 116255763 Common soxA putative sarcosine oxidase alpha subunit pRL110562 179 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 116255542 Common - putative phage integrase/recombinase pRL110344 217 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 116255251 Common - putative transmembrane permease component of ABC transporter pRL110051 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255333 Common - putative short-chain dehydrogenase/oxidoreductase pRL110132 202 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 116255570 Common pepT peptidase T pRL110369 60 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 116255317 Nonpathogen - putative transmembrane protein pRL110116 1 None None None 116255479 Common - putative substrate-binding component of ABC transporter pRL110279 192 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255283 Common - hypothetical protein pRL110083 35 COG3268 COG3268, Uncharacterized conserved protein Function unknown 116255595 Nonpathogen - putative transmembrane protein pRL110394 1 None None None 116255413 Common - putative permease component of ABC transporter pRL110212 171 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 116255368 Common - putative ATP-binding ABC transporter protein pRL110168 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 116255373 Nonpathogen - putative transmembrane protein pRL110173 4 None None None 116255356 Common - putative aldolase pRL110156 74 COG3836 HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Carbohydrate transport and metabolism 116255238 Common - putative surfeit locus protein 1 pRL110038 55 COG3346 COG3346, Uncharacterized conserved protein Function unknown 116255269 Common - putative hydrolase pRL110069 125 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 116255384 Common - putative transmembrane protein pRL110183 10 None None None 116255733 Common - hypothetical protein pRL110532 7 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 116255451 Nonpathogen - hypothetical protein pRL110252 2 None None None 116255625 Nonpathogen - hypothetical protein pRL110424 1 None None None 116255231 Common - putative HTH-type transcriptional regulator pRL110031 124 COG1609 PurR, Transcriptional regulators Transcription 116255740 Common - putative oxidoreductase pRL110539 192 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 116255446 Common - pututative permease component of ABC transporter pRL110245 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255577 Common - putative regulator pRL110376 133 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 116255454 Common - hypothetical protein pRL110255 29 COG1944 COG1944, Uncharacterized conserved protein Function unknown 116255783 Nonpathogen - hypothetical protein pRL110582 1 None None None 116255749 Common - putative oxidoreductase protein pRL110548 59 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 116255559 Nonpathogen - putative transmembrane protein pRL110358 1 None None None 116255724 Nonpathogen - hypothetical protein pRL110523 1 None None None 116255437 Common - putative dehydrogenase pRL110236 168 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 116255467 Common - hypothetical protein pRL110267 4 None None None 116255647 Common - putative ATP-binding component of ABC transporter pRL110446 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 116255403 Common - hypothetical protein pRL110202 41 COG3758 COG3758, Uncharacterized protein conserved in bacteria Function unknown 116255715 Common - putative ATP-binding component of ABC transporter pRL110514 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255514 Nonpathogen - hypothetical protein pRL110315 1 None None None 116255671 Common - hypothetical protein pRL110470 90 COG1741 COG1741, Pirin-related protein General function prediction only 116255244 Common - hypothetical protein pRL110044 5 None None None 116255796 Nonpathogen - hypothetical protein pRL110595 4 None None None 116255553 Nonpathogen - hypothetical protein pRL110354 1 None None None 116255223 Common - Similar to E.coli invasion protein pRL110023 27 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 116255488 Common pcaJ putative 3-oxoadipate CoA-transferase subunit B pRL110288 92 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 116255320 Common - putative AraC family transcriptional regulator pRL110119 132 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 116255634 Common - hypothetical protein pRL110433 40 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 116255305 Nonpathogen - hypothetical protein pRL110106 1 None None None 116255298 Common hsdS putative type I restriction-modification system specificity subunit pRL110099 57 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 116255832 Common cobH precorrin-8X methylmutase pRL110630 118 COG2082 CobH, Precorrin isomerase Coenzyme metabolism 116255723 Common - hypothetical protein pRL110522 21 None None None 116255295 Common - hypothetical protein pRL110096 55 COG1479 COG1479, Uncharacterized conserved protein Function unknown 116255641 Common - putative acetyltransferase pRL110440 13 COG3153 COG3153, Predicted acetyltransferase General function prediction only 116255688 Common - putative permease component of ABC transporter pRL110487 155 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 116255426 Nonpathogen - hypothetical protein pRL110225 1 None None None 116255582 Common kdpA potassium-transporting ATPase subunit A pRL110381 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 116255716 Common - putative permease component of ABC transporter pRL110515 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 116255648 Common - putative formamidase pRL110447 66 COG2421 COG2421, Predicted acetamidase/formamidase Energy production and conversion 116255569 Common - putative phosphoesterase/regulator pRL110368 35 COG1409 Icc, Predicted phosphohydrolases General function prediction only 116255618 Common - hypothetical protein pRL110417 76 COG2128 COG2128, Uncharacterized conserved protein Function unknown 116255562 Nonpathogen - hypothetical protein pRL110361 1 None None None 116255676 Common - putative peptidase pRL110475 139 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 116255439 Common - hypothetical protein pRL110237 6 None None None 116255401 Common - hypothetical protein pRL110200 27 COG4312 COG4312, Uncharacterized protein conserved in bacteria Function unknown 116255415 Common - putative ATP-binding component of ABC transporter pRL110214 249 COG4598 HisP, ABC-type histidine transport system, ATPase component Amino acid transport and metabolism 116255802 Common - hypothetical protein pRL110601 50 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 116255756 Common gltB putative glutamate synthase [NADPH] large chain precursor pRL110555 170 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 116255655 Common - putative substrate-binding component of ABC transporter pRL110454 184 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 116255344 Common - putative transposon/insertion element protein pRL110144 60 None None None 116255777 Common - putative adenylate cyclase pRL110576 52 COG5616 COG5616, Predicted integral membrane protein Function unknown 116255683 Common - putative transcriptional activator protein pRL110482 152 COG0583 LysR, Transcriptional regulator Transcription 116255423 Common - putative transmembrane two-component sensor histidine kinase transcriptional regulator pRL110222 222 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 116255330 Nonpathogen - hypothetical protein pRL110129 1 None None None 116255378 Common - putative short-chain dehydrogenase/reductase pRL110178 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 116255524 Nonpathogen - hypothetical protein pRL110324 1 None None None 116255470 Common - putative ArdC antirestriction protein pRL110270 47 COG4227 COG4227, Antirestriction protein DNA replication, recombination, and repair 116255371 Common - hypothetical protein pRL110171 20 COG1985 RibD, Pyrimidine reductase, riboflavin biosynthesis Coenzyme metabolism 116255205 Common - putative transmembrane protein pRL110005 138 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 116255597 Nonpathogen - putative transmembrane protein pRL110396 11 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 116255527 Common - hypothetical protein pRL110327 30 COG3544 COG3544, Uncharacterized protein conserved in bacteria Function unknown 116255275 Common - putative substrate-binding component of ABC transporter pRL110075 165 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 116255335 Common - putative alcohol dehydrogenase pRL110134 162 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 116255816 Nonpathogen - hypothetical protein pRL110614A 1 None None None