Alcanivorax borkumensis SK2, complete genome NC_008260 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 110834382 Common hrpA ATP-dependent helicase HrpA ABO_1521 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 110834453 Common - transcriptional regulator TetR family ABO_1592 87 COG1309 AcrR, Transcriptional regulator Transcription 110835003 Common - sodium solute transporter family protein ABO_2142 167 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 110834608 Common tyrA/aroF prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltr ABO_1747 231 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 110833965 Common - outer membrane siderophore receptor ABO_1104 61 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110833600 Common proS Prolyl-tRNA synthetase ABO_0739 247 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110835375 Nonpathogen - hypothetical protein ABO_2514 4 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 110833401 Common pmbA pmbA protein ABO_0540 152 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 110833666 Common - aminotransferase ABO_0805 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 110835005 Common - hypothetical protein ABO_2144 74 COG1469 COG1469, Uncharacterized conserved protein Function unknown 110833129 Common ompR osmolarity response regulator ABO_0268 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110834823 Nonpathogen - hypothetical protein ABO_1962 1 None None None 110833174 Common grpE Heat shock protein GrpE ABO_0313 226 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 110835332 Common czcA cation efflux system protein ABO_2471 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 110832916 Common - acyltransferase ABO_0055 167 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 110834800 Nonpathogen - hypothetical protein ABO_1939 2 None None None 110834777 Common - hypothetical protein ABO_1916 13 None None None 110833498 Nonpathogen - hypothetical protein ABO_0637 4 None None None 110833009 Common ech1 enoyl-CoA hydratase/isomerase, putative ABO_0148 163 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 110835274 Common rdgC recombination associated protein ABO_2413 53 COG2974 RdgC, DNA recombination-dependent growth factor C DNA replication, recombination, and repair 110833692 Common colR DNA-binding heavy metal response regulator, putative ABO_0831 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110834759 Common ctaG cytochrome c oxidase assembly protein ABO_1898 68 COG3175 COX11, Cytochrome oxidase assembly factor Posttranslational modification, protein turnover, chaperones 110835504 Nonpathogen - hypothetical protein ABO_2643 1 None None None 110834413 Common - hypothetical protein ABO_1552 95 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 110834758 Common coxC cytochrome c oxidase, subunit III ABO_1897 159 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 110834235 Common czcD1 cation efflux family protein ABO_1374 191 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 110834706 Common katA catalase ABO_1845 127 COG0753 KatE, Catalase Inorganic ion transport and metabolism 110834659 Common alarS (alanyl-tRNA synthetase) ABO_1798 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110833861 Common - hypothetical protein ABO_1000 19 None None None 110834580 Common - MaoC domain protein, putative ABO_1719 26 COG2030 MaoC, Acyl dehydratase Lipid metabolism 110833505 Common - hypothetical protein ABO_0644 45 COG2315 MmcQ, Uncharacterized protein conserved in bacteria Function unknown 110835269 Common - ATP-dependent RNA helicase, DEAD box family ABO_2408 237 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110835458 Common - iron ABC transporter periplasmic binding protein ABO_2597 123 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 110834667 Common - AMP-binding family protein ABO_1806 222 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110834622 Common - hypothetical protein ABO_1761 4 None None None 110834304 Common - hypothetical protein ABO_1443 4 None None None 110834997 Common - hypothetical protein ABO_2136 13 None None None 110835108 Common - hypothetical protein ABO_2247 22 COG3165 COG3165, Uncharacterized protein conserved in bacteria Function unknown 110834703 Common - transcriptional regulator, MarR family ABO_1842 65 COG1846 MarR, Transcriptional regulators Transcription 110833538 Common - acyltransferase, putative ABO_0677 81 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 110834573 Common - acetyl-CoA acetyltransferase ABO_1712 177 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 110835053 Common yjfh RNA methyltransferase, TrmH family, group 3 ABO_2192 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 110834120 Common - cholesterol oxidase, putative ABO_1259 77 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 110832982 Common - transcriptional regulator, GntR family ABO_0121 122 COG1802 GntR, Transcriptional regulators Transcription 110834113 Common bolA bolA protein ABO_1252 75 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 110833512 Nonpathogen - hypothetical protein ABO_0651 1 None None None 110834862 Common - Transcriptional regulatory protein, putative. ABO_2001 207 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110835558 Common - hypothetical protein ABO_2697 17 COG0789 SoxR, Predicted transcriptional regulators Transcription 110833632 Common - hypothetical protein ABO_0771 127 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 110835197 Common - hypothetical protein ABO_2336 32 COG3098 COG3098, Uncharacterized protein conserved in bacteria Function unknown 110835137 Common ctpA carboxyl-terminal protease ABO_2276 183 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 110835195 Common xerC integrase/recombinase XerC ABO_2334 231 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 110833119 Common fklB-1 peptidylprolyl isomerase ABO_0258 143 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 110833846 Common - acyl-CoA synthetase ABO_0985 211 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110834750 Common - sulfonate ABC transporter ATP-binding protein ABO_1889 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 110835573 Nonpathogen - hypothetical protein ABO_2712 5 None None None 110834711 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein ABO_1850 239 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 110833887 Common - oxidoreductase ABO_1026 217 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110834095 Common djlA dnaJ-like protein DjlA ABO_1234 79 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 110835390 Common amtB3 Ammonium transporter 1, member 1 (AtAMT1;1). ABO_2529 202 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 110832999 Common - hypothetical protein ABO_0138 31 COG3528 COG3528, Uncharacterized protein conserved in bacteria Function unknown 110832868 Common - histidinol-phosphatase, putatitve ABO_0007 130 COG0241 HisB, Histidinol phosphatase and related phosphatases Amino acid transport and metabolism 110833062 Common p450 cytochrome P450 family protein ABO_0201 78 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 110832930 Common - hypothetical protein ABO_0069 24 COG3014 COG3014, Uncharacterized protein conserved in bacteria Function unknown 110833815 Common - oxidoreductase ABO_0954 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110833306 Nonpathogen - hypothetical protein ABO_0445 1 None None None 110833578 Common - ABC transporter, ATP-binding protein ABO_0717 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 110835385 Common - transcriptional regulator, TetR-family ABO_2524 121 COG1309 AcrR, Transcriptional regulator Transcription 110834422 Common - transmembrane transport protein, putative ABO_1561 110 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 110835219 Nonpathogen - hypothetical protein ABO_2358 1 None None None 110835282 Common cioB cytochrome bd-I oxidase, subunit II ABO_2421 147 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 110835430 Common rpoH RNA polymerase sigma-32 factor ABO_2569 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 110833756 Common - hypothetical protein ABO_0895 171 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110833772 Common rmlD dTDP-4-dehydrorhamnose reductase ABO_0911 167 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 110834538 Common - transcriptional regulator, Fur family ABO_1677 99 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 110832978 Common adhC alcohol dehydrogenase/ formaldehyde dehydrogenase ABO_0117 210 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 110833240 Common rpoC DNA-directed RNA polymerase subunit beta' ABO_0379 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 110833926 Common - hypothetical protein ABO_1065 61 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 110834637 Common gap glyceraldehyde-3-phosphate dehydrogenase ABO_1776 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 110833828 Common - 2-dehydropantoate 2-reductase ABO_0967 111 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 110834946 Common - hypothetical protein ABO_2085 24 None None None 110835397 Common - transcriptional regulator, AraC family ABO_2536 80 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110833596 Common recQ1 ATP-dependent DNA helicase RecQ ABO_0735 230 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 110834950 Common - L-ornithine N5-oxygenase ABO_2089 53 COG3486 IucD, Lysine/ornithine N-monooxygenase Secondary metabolites biosynthesis, transport, and catabolism 110833342 Common ilvB-1 acetolactate synthase 3 catalytic subunit ABO_0481 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 110834880 Common - ATPase, AAA family ABO_2019 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 110833249 Common algE outer membrane alginate export protein ABO_0388 2 None None None 110834272 Common - OmpA family protein ABO_1411 171 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110835012 Common ectB diaminobutyrate--2-oxoglutarate aminotransferase ABO_2151 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 110834617 Common - hypothetical protein ABO_1756 5 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 110832943 Common - putative truncated transposase ABO_0082 19 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 110833204 Common - hypothetical protein ABO_0343 4 None None None 110834796 Common phoH PhoH family protein ABO_1935 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 110833594 Nonpathogen - hypothetical protein ABO_0733 1 None None None 110835589 Common atpA ATP synthase, alpha subunit ABO_2728 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 110835212 Common - hypothetical protein ABO_2351 6 None None None 110834215 Common tnpA Transposon protein A ABO_1354 176 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 110833954 Common cobB NAD-dependent deacetylase ABO_1093 152 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 110835059 Common - ATP phosphoribosyl transferase regulatory subunit, putative ABO_2198 165 COG3705 HisZ, ATP phosphoribosyltransferase involved in histidine biosynthesis Amino acid transport and metabolism 110834126 Common - oxidoreductase ABO_1265 235 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110832989 Common trkA potassium transporter peripheral membrane component ABO_0128 148 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 110835066 Common mutL DNA mismatch repair protein ABO_2205 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 110835437 Common metX homoserine O-acetyltransferase ABO_2576 133 COG2021 MET2, Homoserine acetyltransferase Amino acid transport and metabolism 110834258 Common - acyltransferase, putative ABO_1397 29 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 110834183 Common - hypothetical protein ABO_1322 68 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 110835597 Common gidB Methyltransferase GidB; glucose-inhibited division protein B ABO_2736 205 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 110833077 Common rpmG ribosomal protein L33 ABO_0216 131 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 110834739 Common - hypothetical protein ABO_1878 100 COG1816 Add, Adenosine deaminase Nucleotide transport and metabolism 110833560 Common - hypothetical protein ABO_0699 26 COG5430 COG5430, Uncharacterized secreted protein Function unknown 110833995 Common - succinate-semialdehyde dehydrogenase [NAD(P)+] ABO_1134 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 110835109 Common - ubiquinone biosynthesis protein, putative ABO_2248 183 COG0661 AarF, Predicted unusual protein kinase General function prediction only 110832902 Nonpathogen - hypothetical protein ABO_0041 4 None None None 110835297 Common - glutamine amidotransferase domain ABO_2436 112 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 110833787 Common - acyl-[acyl-carrier-protein]--UDP-N-acetylglucosa mine O-acylt ABO_0926 140 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 110833586 Common argG argininosuccinate synthase ABO_0725 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 110834061 Common - hypothetical protein ABO_1200 93 COG1881 COG1881, Phospholipid-binding protein General function prediction only 110834366 Common - hypothetical protein ABO_1505 29 None None None 110833252 Common algF Alginate O-acetyltransferase ABO_0391 3 None None None 110833019 Common - MATE efflux family protein, putative ABO_0158 82 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 110835461 Common pepP aminopeptidase P II ABO_2600 239 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 110835341 Common - hypothetical protein ABO_2480 25 COG3687 COG3687, Predicted metal-dependent hydrolase General function prediction only 110834335 Common yfcB N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase ABO_1474 218 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 110835037 Common glyA serine hydroxymethyltransferase ABO_2176 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 110835187 Common rnk nucleoside diphosphate kinase regulator ABO_2326 75 COG0782 GreA, Transcription elongation factor Transcription 110833217 Common thiD adenine phosphoribosyltransferase ABO_0356 220 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 110834889 Common - hypothetical protein ABO_2028 26 COG2258 COG2258, Uncharacterized protein conserved in bacteria Function unknown 110833975 Common ACBP Acyl-CoA-binding protein ABO_1114 20 COG4281 ACB, Acyl-CoA-binding protein Lipid metabolism 110833449 Common - hypothetical protein ABO_0588 31 COG0426 FpaA, Uncharacterized flavoproteins Energy production and conversion 110833821 Common - oxidoreductase ABO_0960 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110833724 Nonpathogen - hypothetical protein ABO_0863 1 None None None 110833479 Common dagA sodium/alanine symporter ABO_0618 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 110834513 Common fadB multifunctional fatty acid oxidation complex subunit alpha ABO_1652 161 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 110832956 Common gloA lactoylglutathione lyase ABO_0095 120 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 110835349 Common - hypothetical protein ABO_2488 44 COG2996 COG2996, Uncharacterized protein conserved in bacteria Function unknown 110833509 Common fadAx acetyl-CoA C-acetyltransferase ABO_0648 186 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 110834324 Common truA tRNA pseudouridine synthase A ABO_1463 235 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 110835166 Common - phosphate transporter, putative ABO_2305 178 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 110833800 Common - cell surface polysaccharide transporter ABO_0939 11 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 110833710 Common - hypothetical protein ABO_0849 11 None None None 110834686 Common - DNA helicase-related protein ABO_1825 92 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 110834901 Common - hypothetical protein ABO_2040 102 COG1733 COG1733, Predicted transcriptional regulators Transcription 110835179 Common - hypothetical protein ABO_2318 20 COG3009 COG3009, Uncharacterized protein conserved in bacteria Function unknown 110833686 Common - hypothetical protein ABO_0825 21 None None None 110834442 Common - hypothetical protein ABO_1581 5 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 110833959 Common rsuA Ribosomal small subunit pseudouridine synthase A ABO_1098 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 110835475 Common gap glyceraldehyde 3-phosphate dehydrogenase ABO_2614 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 110835487 Common - hypothetical protein ABO_2626 51 COG3123 COG3123, Uncharacterized protein conserved in bacteria Function unknown 110833703 Common bfr bacterioferritin ABO_0842 115 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 110835326 Common - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ABO_2465 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 110835180 Common hemY hemY protein ABO_2319 42 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 110835075 Common phaC1 polyhydroxyalkanoate synthase ABO_2214 62 COG3243 PhaC, Poly(3-hydroxyalkanoate) synthetase Lipid metabolism 110833034 Common - hypothetical protein ABO_0173 7 COG0398 COG0398, Uncharacterized conserved protein Function unknown 110834491 Common era GTP-binding protein Era homolog ABO_1630 235 COG1159 Era, GTPase General function prediction only 110833717 Common - hypothetical protein ABO_0856 14 COG3303 NrfA, Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit Inorganic ion transport and metabolism 110834896 Common cyoC cytochrome o ubiquinol oxidase, subunit III ABO_2035 158 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 110832975 Common - sterol desaturase family protein ABO_0114 71 COG3000 ERG3, Sterol desaturase Lipid metabolism 110833189 Common nusA transcription elongation factor ABO_0328 216 COG0195 NusA, Transcription elongation factor Transcription 110834537 Common - hypothetical protein ABO_1676 5 None None None 110834156 Common cysG uroporphyrin-III C-methyltransferase ABO_1295 204 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 110833765 Common - hypothetical protein ABO_0904 21 None None None 110834838 Common - hypothetical protein ABO_1977 20 None None None 110833090 Common - glyoxalase/bleomycin resistance family protein, putative ABO_0229 5 COG2514 COG2514, Predicted ring-cleavage extradiol dioxygenase General function prediction only 110835236 Nonpathogen - hypothetical protein ABO_2375 2 None None None 110834980 Common - nitric oxide dioxygenase ABO_2119 121 COG1017 Hmp, Hemoglobin-like flavoprotein Energy production and conversion 110834693 Common hsdR type I restriction-modification system, R subunit ABO_1832 123 COG4096 HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 110833304 Common - hypothetical protein ABO_0443 13 None None None 110833778 Common - acyltransferase, putative ABO_0917 79 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 110834770 Common - protease, putative ABO_1909 169 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 110833284 Common rplQ 50S ribosomal protein L17 ABO_0423 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 110833067 Common rph ribonuclease PH ABO_0206 187 COG0689 Rph, RNase PH Translation, ribosomal structure and biogenesis 110833834 Common - methyltransferase, putative ABO_0973 47 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 110834414 Common - hypothetical protein ABO_1553 31 COG3101 COG3101, Uncharacterized protein conserved in bacteria Function unknown 110834591 Common - hypothetical protein ABO_1730 36 COG2329 COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides General function prediction only 110834096 Common - hypothetical protein ABO_1235 22 COG2841 COG2841, Uncharacterized protein conserved in bacteria Function unknown 110833182 Common rrmJ ribosomal RNA large subunit methyltransferase J ABO_0321 138 COG0293 FtsJ, 23S rRNA methylase Translation, ribosomal structure and biogenesis 110833171 Common recN DNA repair protein RecN ABO_0310 198 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 110833210 Common - Rieske 2Fe-2S family protein, putative ABO_0349 45 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 110833913 Common rec2 DNA internalization-related protein ABO_1052 149 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 110834378 Common - hypothetical protein ABO_1517 18 COG3219 COG3219, Uncharacterized protein conserved in bacteria Function unknown 110834809 Common rlpB Rare lipoprotein B precursor ABO_1948 3 COG2980 RlpB, Rare lipoprotein B Cell envelope biogenesis, outer membrane 110833499 Common leuA 2-isopropylmalate synthase ABO_0638 214 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 110833052 Common - hydrolase, alpha/beta fold family ABO_0191 115 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110833762 Common - oxidoreductase, putative ABO_0901 179 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 110835035 Common ribD (S)-2-hydroxy-fatty-acid dehydrogenase ABO_2174 228 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 110835159 Common waaC lipopolysaccharide heptosyltransferase I ABO_2298 52 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 110833880 Common - hypothetical protein ABO_1019 202 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 110834934 Nonpathogen - hypothetical protein ABO_2073 1 None None None 110833262 Common rpsS 30S ribosomal protein S19 ABO_0401 248 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 110834820 Common dacA D-alanyl-D-alanine-carboxypeptidase ABO_1959 155 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 110833725 Common - hypothetical protein ABO_0864 31 COG4807 COG4807, Uncharacterized protein conserved in bacteria Function unknown 110834921 Common rpsU 30S ribosomal protein S21 ABO_2060 98 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 110835308 Common lysRS lysyl-tRNA synthetase ABO_2447 205 COG2269 COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 110833626 Common - transcriptional regulator, MerR family ABO_0765 31 COG0789 SoxR, Predicted transcriptional regulators Transcription 110833368 Common - amidase family protein ABO_0507 220 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 110834346 Common xthA exodeoxyribonuclease III ABO_1485 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 110835602 Common aceA isocitrate lyase ABO_2741 118 COG2224 AceA, Isocitrate lyase Energy production and conversion 110835536 Common - hypothetical protein ABO_2675 3 COG3247 HdeD, Uncharacterized conserved protein Function unknown 110834275 Common - hypothetical protein ABO_1415 66 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 110834315 Common metZ O-succinylhomoserine sulfhydrylase ABO_1454 209 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 110834051 Common - yhgI conserved hypothetical protein ABO_1190 63 COG0316 IscA, Uncharacterized conserved protein Function unknown 110833044 Common - hypothetical protein ABO_0183 29 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 110833849 Common - acyl-CoA dehydrogenase ABO_0988 159 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110834311 Common - hypothetical protein ABO_1450 4 None None None 110833984 Common glnK-1 nitrogen regulatory protein P-II ABO_1123 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 110833773 Common - acetyltransferase, putative ABO_0912 100 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 110833827 Common ttgR transcriptional regulator TtgR ABO_0966 113 COG1309 AcrR, Transcriptional regulator Transcription 110834926 Common - hypothetical protein ABO_2065 23 COG3843 VirD2, Type IV secretory pathway, VirD2 components (relaxase) Intracellular trafficking and secretion 110833315 Common obgE GTPase ObgE ABO_0454 234 COG0536 Obg, Predicted GTPase General function prediction only 110832938 Nonpathogen - hypothetical protein ABO_0077 1 None None None 110833199 Common - Deoxynucleoside kinase ABO_0338 39 COG1428 COG1428, Deoxynucleoside kinases Nucleotide transport and metabolism 110833803 Common - glycosyl transferase, putative ABO_0942 62 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 110834288 Common ppsA phosphoenolpyruvate synthase ABO_1427 235 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 110833014 Common cspE cold-shock protein ABO_0153 178 COG1278 CspC, Cold shock proteins Transcription 110835408 Common - hypothetical protein ABO_2547 46 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 110835424 Common - hypothetical protein ABO_2563 178 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 110835436 Common - hypothetical protein ABO_2575 11 None None None 110833197 Common panC pantothenate synthetase ABO_0336 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 110835413 Nonpathogen - hypothetical protein ABO_2552 1 None None None 110833866 Common - hypothetical protein ABO_1005 153 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 110833205 Common gltX glutamyl-tRNA synthetase-related protein ABO_0344 244 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 110835414 Common - hypothetical protein ABO_2553 18 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 110834201 Common ydaA universal stress protein family ABO_1340 45 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 110833658 Common ffh signal recognition particle protein Ffh ABO_0797 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 110834813 Common - Probable nicotinate-nucleotide adenylyltransferase ABO_1952 183 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 110833429 Common - hypothetical protein ABO_0568 19 COG3105 COG3105, Uncharacterized protein conserved in bacteria Function unknown 110834844 Common - branched-chain amino acid ABC transporter,permease protein ABO_1983 117 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 110835470 Common - hypothetical protein predicted ABO_2609 19 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 110833809 Common zipA cell division protein ZipA ABO_0948 41 COG3115 ZipA, Cell division protein Cell division and chromosome partitioning 110833311 Common - hypothetical protein ABO_0450 6 COG3056 COG3056, Uncharacterized lipoprotein Cell envelope biogenesis, outer membrane 110835288 Common - transcriptional regulator, LysR family ABO_2427 130 COG0583 LysR, Transcriptional regulator Transcription 110832969 Common pilH type IV pili response regulator PilH ABO_0108 224 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 110834579 Common - transcriptional regulator, TetR family ABO_1718 50 COG1309 AcrR, Transcriptional regulator Transcription 110834640 Common - hypothetical protein ABO_1779 13 None None None 110834141 Common - pseudouridylate synthase ABO_1280 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 110833489 Common - TonB dependent receptor ABO_0628 61 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 110833381 Common - outer membrane lipoprotein LolB ABO_0520 45 COG3017 LolB, Outer membrane lipoprotein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 110833469 Common argJ bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein ABO_0608 167 COG1364 ArgJ, N-acetylglutamate synthase (N-acetylornithine aminotransferase) Amino acid transport and metabolism 110833192 Common truB pseudouridylate synthase ABO_0331 245 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 110833702 Nonpathogen - hypothetical protein predicted ABO_0841 2 None None None 110834603 Common - hypothetical protein ABO_1742 59 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 110833613 Common ruvA Holliday junction DNA helicase RuvA ABO_0752 211 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 110835370 Common - branched-chain amino acid ABC transporter, putative ABO_2509 106 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 110833905 Common - hypothetical protein ABO_1044 138 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110834133 Common - hypothetical protein ABO_1272 58 COG2850 COG2850, Uncharacterized conserved protein Function unknown 110834528 Common - methyltransferase ABO_1667 34 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110833147 Common - oxidoreductase ABO_0286 234 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110834251 Common trpS tryptophanyl-tRNA synthetase ABO_1390 230 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110834529 Common - Ion transport protein ABO_1668 26 None None None 110834031 Common - hypothetical protein ABO_1170 50 COG2035 COG2035, Predicted membrane protein Function unknown 110834376 Common - hypothetical protein ABO_1515 37 COG4103 COG4103, Uncharacterized protein conserved in bacteria Function unknown 110833431 Common - AFG1-like ATPase, putative ABO_0570 103 COG1485 COG1485, Predicted ATPase General function prediction only 110834447 Common - hypothetical protein ABO_1586 91 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 110833320 Common ileS Isoleucyl-tRNA synthetase ABO_0459 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110833544 Common plsC2 1-acyl-sn-glycerol-3-phosphate acyltransferase ABO_0683 111 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 110833121 Common - effector of murein hydrolase, putative ABO_0260 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 110835543 Common pstB phosphate ABC transporter ATP-binding protein ABO_2682 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 110834293 Common prpC 2-methylcitrate synthase ABO_1432 194 COG0372 GltA, Citrate synthase Energy production and conversion 110835315 Common - lipase/esterase ABO_2454 109 COG0657 Aes, Esterase/lipase Lipid metabolism 110833088 Common - transposase, putative ABO_0227 19 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 110832877 Common - hypothetical protein ABO_0016 5 None None None 110834498 Common algN negative regulator for alginate biosynthesis ABO_1637 48 COG3026 RseB, Negative regulator of sigma E activity Signal transduction mechanisms 110834986 Common cysI-1 sulfite reductase (NADPH) ABO_2125 56 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 110835528 Common - YGGT family protein, putative ABO_2667 103 COG0762 COG0762, Predicted integral membrane protein Function unknown 110833150 Common - hypothetical protein ABO_0289 42 COG3391 COG3391, Uncharacterized conserved protein Function unknown 110834564 Common arsR regulatory protein, arsR family ABO_1703 24 COG0640 ArsR, Predicted transcriptional regulators Transcription 110833840 Common - hypothetical protein ABO_0979 19 None None None 110835125 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ABO_2264 34 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 110834502 Common nadB L-aspartate oxidase ABO_1641 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 110834918 Common folB dihydroneopterin aldolase ABO_2057 105 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 110834728 Common sufD permease component of ABC-tranporter ABO_1867 167 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 110834463 Common - phosphohydrolase, HD domain protein family, putative ABO_1602 16 COG4341 COG4341, Predicted HD phosphohydrolase General function prediction only 110835387 Nonpathogen - hypothetical protein ABO_2526 1 None None None 110834269 Common glpD glycerol-3-phosphate dehydrogenase ABO_1408 148 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 110834977 Common - transcriptional regulator, LysR-family ABO_2116 110 COG0583 LysR, Transcriptional regulator Transcription 110834509 Common lysS Lysyl-tRNA synthetase ABO_1648 248 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 110835257 Common - hypothetical protein ABO_2395 35 None None None 110833118 Nonpathogen - hypothetical protein ABO_0257 1 None None None 110832962 Common - phospholipase ABO_0101 102 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 110834101 Common ivd isovaleryl-CoA dehydrogenase ABO_1240 169 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110834650 Common - hypothetical protein ABO_1789 22 None None None 110833135 Common ndh NADH dehydrogenase ABO_0274 183 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 110834004 Common rpsB 30S ribosomal protein S2 ABO_1143 229 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 110833299 Common - oxidoreductase ABO_0438 69 COG0778 NfnB, Nitroreductase Energy production and conversion 110835511 Common cc4 cytochrome c4 precursor ABO_2650 62 COG2863 COG2863, Cytochrome c553 Energy production and conversion 110833097 Common - hypothetical protein ABO_0236 9 None None None 110833158 Common - ABC transporter, ATP-binding protein, putative ABO_0297 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 110835245 Common p450 cytochrome P450, putative ABO_2384 82 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 110835204 Common folA dihydrofolate reductase ABO_2343 145 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 110833076 Common rpmB ribosomal protein L28 ABO_0215 157 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 110833653 Common - anhydrase, family 3 protein ABO_0792 204 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 110833894 Common nqrB Na(+)-translocating NADH-quinone reductase subunit B ABO_1033 76 COG1805 NqrB, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB Energy production and conversion 110834077 Common oppF oligopeptide ABC transporter, ATP-binding protein ABO_1216 249 COG4172 COG4172, ABC-type uncharacterized transport system, duplicated ATPase component General function prediction only 110834022 Common recQ ATP-dependent DNA helicase RecQ ABO_1161 236 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 110835225 Common murI glutamate racemase ABO_2364 190 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 110834673 Common - hypothetical protein ABO_1812 43 COG3222 COG3222, Uncharacterized protein conserved in bacteria Function unknown 110835046 Common radA DNA repair protein RadA ABO_2185 222 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 110833276 Common rpmD 50S ribosomal protein L30 ABO_0415 139 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 110834766 Common ctaA Cytochrome c oxidase assembly protein ABO_1905 57 COG1612 CtaA, Uncharacterized protein required for cytochrome oxidase assembly Posttranslational modification, protein turnover, chaperones 110834197 Common blaB Metallo-beta-lactamase family protein ABO_1336 154 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 110834551 Common pfeS putative kinase sensor protein ABO_1690 216 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110835442 Common - AcrR transcription regulator family protein ABO_2581 18 COG1309 AcrR, Transcriptional regulator Transcription 110834242 Common czcC3 cobalt/zinc/cadmium efflux RND transporter,outermembrane pr ABO_1381 41 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110832880 Common mmsR transcriptional regulator MmsR ABO_0019 112 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110835518 Common mnhC putative monovalent cation/H+ antiporter subunit C ABO_2657 90 COG1006 MnhC, Multisubunit Na+/H+ antiporter, MnhC subunit Inorganic ion transport and metabolism 110834398 Common dhlB haloacid dehalogenase-like hydrolase ABO_1537 109 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 110832996 Common - coproporphyrinogen III oxidase ABO_0135 113 COG0408 HemF, Coproporphyrinogen III oxidase Coenzyme metabolism 110833651 Nonpathogen - hypothetical protein ABO_0790 1 None None None 110834496 Common algW alginate biosynthesis negative regulator, serine protease ABO_1635 224 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 110834748 Common - sulfonate ABC transporter periplasmic-binding protein ABO_1887 55 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 110834854 Common - rhodanese domain protein ABO_1993 168 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 110833391 Common mreB rod shape-determining protein MreB ABO_0530 236 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 110833216 Common thiE thiamine-phosphate diphosphorylase ABO_0355 180 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 110834336 Common - hypothetical protein ABO_1475 94 COG2947 COG2947, Uncharacterized conserved protein Function unknown 110833358 Common - hypothetical protein ABO_0497 89 COG0795 COG0795, Predicted permeases General function prediction only 110832918 Common - hypothetical protein ABO_0057 19 COG4399 COG4399, Uncharacterized protein conserved in bacteria Function unknown 110833230 Common - transcriptional activator, putative ABO_0369 135 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 110834168 Common - sensor histidine kinase/respose regulator ABO_1307 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110835260 Common speE spermidine synthase ABO_2399 116 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 110833945 Common - serine (threonine) protein kinase ABO_1084 148 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 110834581 Common - tRNA 2-selenouridine synthase ABO_1720 65 COG2603 COG2603, Predicted ATPase General function prediction only 110835491 Common - AcrB/C/D family cation/multidrug efflux pump ABO_2630 178 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 110833439 Common petA ubiquinol--cytochrome c reductase, iron-sulfur subunit ABO_0578 91 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 110835580 Common ureC urease subunit alpha ABO_2719 96 COG0804 UreC, Urea amidohydrolase (urease) alpha subunit Amino acid transport and metabolism 110835174 Common nahD 2-hydroxychromene-2-carboxylate isomerase, putative ABO_2313 29 COG3917 NahD, 2-hydroxychromene-2-carboxylate isomerase Secondary metabolites biosynthesis, transport, and catabolism 110833331 Common - oxidoreductase ABO_0470 118 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 110835118 Nonpathogen - hypothetical protein ABO_2258 1 None None None 110834249 Common - putative transcriptional regulator ABO_1388 148 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 110834557 Common - hypothetical protein ABO_1696 40 COG3360 COG3360, Uncharacterized conserved protein Function unknown 110834354 Common sucC succinyl-CoA synthetase, beta subunit ABO_1493 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 110833357 Common - hypothetical protein ABO_0496 84 COG0795 COG0795, Predicted permeases General function prediction only 110834048 Common - hypothetical protein ABO_1187 53 COG3749 COG3749, Uncharacterized protein conserved in bacteria Function unknown 110833001 Common prlC oligopeptidase A ABO_0140 124 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 110833440 Common petB ubiquinol-cytochrome c reductase cytochrome b subunit ABO_0579 148 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 110834853 Common - hypothetical protein ABO_1992 10 COG3409 COG3409, Putative peptidoglycan-binding domain-containing protein Cell envelope biogenesis, outer membrane 110835319 Common - ring-cleaving dioxygenase, putative ABO_2458 34 COG3565 COG3565, Predicted dioxygenase of extradiol dioxygenase family General function prediction only 110833716 Common nirB1 nitrite reductase [NAD(P)H] ABO_0855 235 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 110834958 Common endA endonuclease I ABO_2097 38 COG2356 EndA, Endonuclease I DNA replication, recombination, and repair 110835196 Common - hydrolase, putative ABO_2335 78 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 110835266 Common - PqiB family protein ABO_2405 56 COG3008 PqiB, Paraquat-inducible protein B General function prediction only 110835596 Common parA ParA family ATPase ABO_2735 231 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 110833820 Common - short chain dehydrogenase ABO_0959 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110835283 Common cioA cytochrome bd-1 oxidase, subunit I ABO_2422 165 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 110832891 Common - sensor histidine kinase ABO_0030 151 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110833136 Common pckA phosphoenolpyruvate carboxykinase ABO_0275 99 COG1866 PckA, Phosphoenolpyruvate carboxykinase (ATP) Energy production and conversion 110833635 Common - AhpC/TSA family protein ABO_0774 209 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110834574 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase ABO_1713 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110835209 Common ptsP phosphoenolpyruvate-protein phosphotransferase ABO_2348 235 COG3605 PtsP, Signal transduction protein containing GAF and PtsI domains Signal transduction mechanisms 110833886 Common - hypothetical protein ABO_1025 16 COG0824 FcbC, Predicted thioesterase General function prediction only 110835457 Common - Fe-ABC transporter permease protein ABO_2596 194 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 110833611 Common - hypothetical protein ABO_0750 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 110834125 Common - acyl-CoA dehydrogenase ABO_1264 135 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110833371 Common tdh tartrate dehydrogenase ABO_0510 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 110835188 Nonpathogen - hypothetical protein ABO_2327 1 None None None 110833953 Common aroF-1 phospho-2-dehydro-3-heoxyheptonate aldolase ABO_1092 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 110835557 Common - short chain dehydrogenase ABO_2696 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110833833 Common - phosphotransferase-histidinkinase, family protein ABO_0972 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110832940 Common - acyltransferases ABO_0079 119 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 110835052 Common rpsF 30S ribosomal protein S6 ABO_2191 199 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 110832981 Common amiC amidase ABO_0120 216 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 110835065 Common miaA tRNA isopentenyltransferase ABO_2204 213 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 110835305 Common - hypothetical protein ABO_2444 13 None None None 110834053 Common aarF ABC1 family protein, ubiquinone biosynthesis protein ABO_1192 185 COG0661 AarF, Predicted unusual protein kinase General function prediction only 110833480 Common - hypothetical protein ABO_0619 20 None None None 110834001 Common - hypothetical protein ABO_1140 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 110833061 Common fdx ferredoxin, 2Fe-2S ABO_0200 90 COG0633 Fdx, Ferredoxin Energy production and conversion 110833517 Common - 3-hydroxyacyl-CoA dehydrogenase ABO_0656 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110835392 Common - hypothetical protein ABO_2531 56 COG2960 COG2960, Uncharacterized protein conserved in bacteria Function unknown 110835198 Common - hypothetical protein ABO_2337 33 COG3720 HemS, Putative heme degradation protein Inorganic ion transport and metabolism 110834861 Common - sensor histidine kinase ABO_2000 209 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110833687 Common - hypothetical protein ABO_0826 7 None None None 110832998 Common - hypothetical protein ABO_0137 21 None None None 110833490 Common - 2-dehydropantoate 2-reductase ABO_0629 75 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 110834947 Common dbpA ATP-dependent RNA helicase DbpA ABO_2086 234 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110835488 Nonpathogen - hypothetical protein ABO_2627 1 None None None 110834138 Common moaC molybdenum cofactor biosynthesis protein C ABO_1277 195 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 110834104 Common - sensor histidine kinase ABO_1243 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110835173 Common ilvD2 dihydroxy-acid dehydratase ABO_2312 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 110835574 Nonpathogen - hypothetical protein ABO_2713 1 None None None 110834590 Common - hypothetical protein ABO_1729 200 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 110833566 Common - hypothetical protein ABO_0705 110 COG1574 COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 110833282 Common rpsD 30S ribosomal protein S4 ABO_0421 218 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 110835386 Nonpathogen - hypothetical protein ABO_2525 1 None None None 110834429 Common - hypothetical protein ABO_1568 9 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 110835158 Common waaG UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase ABO_2297 96 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110833874 Nonpathogen - hypothetical protein ABO_1013 1 None None None 110833970 Common - hypothetical protein ABO_1109 55 COG3484 COG3484, Predicted proteasome-type protease Posttranslational modification, protein turnover, chaperones 110834435 Common purN phosphoribosylglycinamide formyltransferase ABO_1574 223 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 110835004 Nonpathogen - hypothetical protein ABO_2143 1 None None None 110833367 Common - aminotransferase, putative ABO_0506 237 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 110833966 Common - hypothetical protein ABO_1105 4 None None None 110834011 Common - membrane-associated zinc metalloprotease, putative ABO_1150 210 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 110833091 Common - glutathione S-transferase ABO_0230 49 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 110834910 Common apaG ApaG ABO_2049 89 COG2967 ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport Inorganic ion transport and metabolism 110835044 Common - mercuric reductase, putative ABO_2183 244 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 110833036 Common - endoribonuclease ABO_0175 187 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 110833011 Nonpathogen - hypothetical protein ABO_0150 1 None None None 110833693 Common - transcriptional regulator, AraC family ABO_0832 160 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 110834508 Common - transcriptional regulator, TetR family ABO_1647 28 COG3226 COG3226, Uncharacterized protein conserved in bacteria Function unknown 110835399 Common rep ATP-dependent DNA helicase Rep ABO_2538 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 110834808 Common leuS leucine-tRNA synthetase ABO_1947 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110834305 Common eif initiation factor eIF-2B ABO_1444 132 COG0182 COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family Translation, ribosomal structure and biogenesis 110834737 Common - SIR2 family protein ABO_1876 31 None None None 110834068 Common glnS glutaminyl-tRNA synthetase ABO_1207 245 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 110833852 Common - hypothetical protein ABO_0991 38 None None None 110834704 Common - monooxygenase, putative ABO_1843 27 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 110832903 Common - phosphotransferase family protein ABO_0042 61 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 110832915 Common - transcriptional regulator, TetR family ABO_0054 22 COG1309 AcrR, Transcriptional regulator Transcription 110834412 Common - ATPase, AAA protein family, putative ABO_1551 180 COG0714 COG0714, MoxR-like ATPases General function prediction only 110833647 Common - hypothetical protein ABO_0786 13 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 110834078 Common oppC oligopeptide ABC transporter, permease protein ABO_1217 220 COG4239 COG4239, ABC-type uncharacterized transport system, permease component General function prediction only 110834625 Common hit-1 HIT family protein ABO_1764 127 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 110835086 Common phhB pterin-4alpha-carbinolamine dehydratase ABO_2225 92 COG2154 COG2154, Pterin-4a-carbinolamine dehydratase Coenzyme metabolism 110835376 Common - Na+ symporter family protein ABO_2515 74 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 110833892 Common gapA glyceraldehyde-3-phosphate dehydrogenase ABO_1031 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 110833534 Common - hypothetical protein ABO_0673 10 None None None 110834470 Common rnfA electron transport complex protein RnfA ABO_1609 76 COG4657 RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA Energy production and conversion 110833043 Common - hypothetical protein ABO_0182 15 None None None 110833229 Common birA biotin-[acetyl-CoA-carboxylase] ligase ABO_0368 132 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 110832923 Nonpathogen - hypothetical protein ABO_0062 2 None None None 110833033 Common purK phosphoribosylaminoimidazole carboxylase ABO_0172 192 COG0026 PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) Nucleotide transport and metabolism 110834034 Nonpathogen - hypothetical protein ABO_1173 2 None None None 110834652 Common - acetyl-CoA hydrolase/transferase family protein, putative ABO_1791 62 COG0427 ACH1, Acetyl-CoA hydrolase Energy production and conversion 110835342 Common pfeA outer membrane ferric enterobactin receptor ABO_2481 129 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 110833452 Common ftsl cell division protein FtsL ABO_0591 24 COG3116 FtsL, Cell division protein Cell division and chromosome partitioning 110834909 Common ksgA Ribosomal RNA adenine dimethylase ABO_2048 247 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 110834685 Common rbgA ribosomal biogenesis GTPase ABO_1824 94 COG1161 COG1161, Predicted GTPases General function prediction only 110833395 Common - hypothetical protein ABO_0534 55 COG3164 COG3164, Predicted membrane protein Function unknown 110835163 Common glnE glutamate-ammonia-ligase adenylyltransferase ABO_2302 119 COG1391 GlnE, Glutamine synthetase adenylyltransferase Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms 110832953 Common - hypothetical protein ABO_0092 24 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 110834530 Common - hypothetical protein ABO_1669 3 None None None 110835330 Common - hypothetical protein ABO_2469 81 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 110835469 Common - hypothetical protein ABO_2608 73 COG2267 PldB, Lysophospholipase Lipid metabolism 110835119 Common pip proline iminopeptidase (PIP) ABO_2257 94 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110833173 Common hrcA Heat-inducible transcription repressor hrcA ABO_0312 146 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 110833597 Common chrA chromate transporter ABO_0736 98 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 110833506 Nonpathogen - hypothetical protein ABO_0645 1 None None None 110833727 Common - hypothetical protein ABO_0866 5 None None None 110834160 Common - DsrE/DsrF-like family protein ABO_1299 24 COG1553 DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction Inorganic ion transport and metabolism 110832863 Common dnaN DNA polymerase III, beta subunit ABO_0002 215 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 110833160 Common - hypothetical protein ABO_0299 56 COG3781 COG3781, Predicted membrane protein Function unknown 110835443 Common - hypothetical protein ABO_2582 8 None None None 110834778 Common plsC1 1-acyl-sn-glycerol-3-phosphate acyltransferase ABO_1917 168 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 110835280 Common - alcohol dehydrogenase, NADH-dependent, putative ABO_2419 170 COG1979 COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family Energy production and conversion 110833601 Common - hypothetical protein ABO_0740 35 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 110834325 Common - hypothetical protein ABO_1464 43 COG3170 FimV, Tfp pilus assembly protein FimV Cell motility and secretion / Intracellular trafficking and secretion 110833785 Common - glycosyl transferase ABO_0924 202 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110834881 Common - hypothetical protein ABO_2020 48 COG2941 CAT5, Ubiquinone biosynthesis protein COQ7 Coenzyme metabolism 110834454 Nonpathogen - hypothetical protein ABO_1593 1 None None None 110834900 Common - oxidoreductase, FMN-binding ABO_2039 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 110832977 Common - esterase, putative ABO_0116 98 COG0627 COG0627, Predicted esterase General function prediction only 110835100 Common maeB malic enzyme ABO_2239 201 COG0281 SfcA, Malic enzyme Energy production and conversion 110833925 Common maf-2 maf protein ABO_1064 193 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 110834539 Common - hypothetical protein ABO_1678 16 None None None 110834616 Common - oxidoreductase, short chaindehydrogenase/reductase family ABO_1755 226 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110835024 Nonpathogen - hypothetical protein ABO_2163 2 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 110833579 Common argF ornithine carbamoyltransferase ABO_0718 240 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 110835325 Common - hypothetical protein ABO_2464 20 COG4642 COG4642, Uncharacterized protein conserved in bacteria Function unknown 110834544 Common pyrC dihydroorotase ABO_1683 210 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 110833441 Common petC ubiquinol-cytochrome c reductase cytochrome c1 subunit ABO_0580 79 COG2857 CYT1, Cytochrome c1 Energy production and conversion 110835097 Common pilN type IV pili biogenesis protein PilN ABO_2236 39 COG3166 PilN, Tfp pilus assembly protein PilN Cell motility and secretion / Intracellular trafficking and secretion 110834191 Common - ABC1/ AarF family protein ABO_1330 182 COG0661 AarF, Predicted unusual protein kinase General function prediction only 110833595 Common - ATP-dependent RNA helicase, DEAD box family ABO_0734 230 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110833729 Nonpathogen - hypothetical protein ABO_0868 1 None None None 110833203 Common - sensory box histidine kinase ABO_0342 222 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 110833704 Nonpathogen oadG oxaloacetate decarboxylase, gamma chain ABO_0843 1 COG3630 OadG, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit Energy production and conversion 110834636 Common dnaX DNA polymerase III, gamma and tau subunits ABO_1775 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 110833937 Common pilZ type IV fimbriae assembly protein ABO_1076 33 COG3215 PilZ, Tfp pilus assembly protein PilZ Cell motility and secretion / Intracellular trafficking and secretion 110834094 Common hyi hydroxypyruvate isomerase ABO_1233 85 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 110834818 Common mltB membrane-bound lytic murein transglycosylase B ABO_1957 103 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 110832889 Common - transcriptional regulator, LysR family ABO_0028 160 COG0583 LysR, Transcriptional regulator Transcription 110835043 Common - arsenic (+3 oxidation state) methyltransferase ABO_2182 104 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110834725 Common ndk nucleoside-diphosphate kinase ABO_1864 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 110833341 Common - hypothetical protein ABO_0480 2 None None None 110833976 Common - hypothetical protein ABO_1115 22 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 110833745 Common - nitroreductase family protein ABO_0884 108 COG0778 NfnB, Nitroreductase Energy production and conversion 110834521 Common - hypothetical protein ABO_1660 33 COG0551 TopA, Zn-finger domain associated with topoisomerase type I DNA replication, recombination, and repair 110833322 Common fkpB peptidylprolyl isomerase ABO_0461 131 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 110833142 Common - hypothetical protein ABO_0281 67 COG2267 PldB, Lysophospholipase Lipid metabolism 110833755 Common - hypothetical protein ABO_0894 11 None None None 110834290 Common prpD 2-methylcitrate dehydratase ABO_1429 57 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 110833670 Common - hypothetical protein ABO_0809 114 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 110834767 Common idsA prenyltransferase family, putative ABO_1906 180 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 110835567 Common alkS alkB1GHJ regulator ABO_2706 62 COG2909 MalT, ATP-dependent transcriptional regulator Transcription 110835090 Common gltB glutamate synthase subunit alpha ABO_2229 204 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 110834182 Nonpathogen - hypothetical protein ABO_1321 2 None None None 110834407 Nonpathogen - hypothetical protein ABO_1546 2 COG3308 COG3308, Predicted membrane protein Function unknown 110835058 Common purA adenylosuccinate synthase ABO_2197 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 110833332 Common - sigma-54 dependent DNA-binding response regulator ABO_0471 201 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 162139945 Common argA N-acetylglutamate synthase ABO_2306 192 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 110832942 Common coaD pantetheine-phosphate adenylyltransferase ABO_0081 209 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 110833104 Nonpathogen - hypothetical protein ABO_0243 1 None None None 110834282 Common - hypothetical protein ABO_1421 28 COG3339 COG3339, Uncharacterized conserved protein Function unknown 110833422 Common hisG ATP phosphoribosyltransferase catalytic subunit ABO_0561 209 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 110833561 Common csuC type 1 pili usher pathway chaperone CsuC ABO_0700 30 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 110834257 Common - hypothetical protein ABO_1396 15 None None None 110833149 Common - monooxygenase ABO_0288 85 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 110833996 Common - efflux transporter, permease protein ABO_1135 50 COG1289 COG1289, Predicted membrane protein Function unknown 110834214 Common - transcriptional regulator, LysR family ABO_1353 166 COG0583 LysR, Transcriptional regulator Transcription 110835022 Nonpathogen - hypothetical protein ABO_2161 1 None None None 110832879 Nonpathogen - hypothetical protein ABO_0018 2 None None None 110835296 Common - hypothetical protein ABO_2435 11 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 110834795 Common - hypothetical protein ABO_1934 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 110833589 Common rimK ribosomal protein S6 modification protein ABO_0728 149 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 110833644 Common - hypothetical protein ABO_0783 6 None None None 110833349 Common - lipid kinase ABO_0488 72 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 110834259 Common - hypothetical protein ABO_1398 34 None None None 110834289 Common - hypothetical protein ABO_1428 113 COG1806 COG1806, Uncharacterized protein conserved in bacteria Function unknown 110833098 Nonpathogen - hypothetical protein ABO_0237 1 None None None 110833784 Nonpathogen - hypothetical protein ABO_0923 2 None None None 110832883 Common mmsB 3-hydroxyisobutyrate dehydrogenase ABO_0022 169 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 110833179 Common carB carbamoyl phosphate synthase large subunit ABO_0318 236 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 110833404 Common narI Respiratory nitrate reductase 1 gamma chain ABO_0543 58 COG2181 NarI, Nitrate reductase gamma subunit Energy production and conversion 110835449 Common - transposase-like protein ABO_2588 77 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 110833770 Common galE 4-epimerase ABO_0909 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110834646 Common - truncated transposase ABO_1785 15 None None None 110834365 Common - hypothetical protein ABO_1504 8 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 110832939 Common - hypothetical protein ABO_0078 7 COG3832 COG3832, Uncharacterized conserved protein Function unknown 110835409 Nonpathogen - hypothetical protein ABO_2548 1 None None None 110835505 Common - hypothetical protein ABO_2644 43 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 110833310 Common - hypothetical protein ABO_0449 29 COG3526 COG3526, Uncharacterized protein conserved in bacteria Posttranslational modification, protein turnover, chaperones 110835148 Common - transposase, putative ABO_2287 2 None None None 110834668 Nonpathogen - hypothetical protein ABO_1807 1 None None None 110833528 Common - BNR domain protein, putative ABO_0667 31 COG4447 COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor General function prediction only 110834314 Common - ATPase, AAA protein family, putative ABO_1453 173 COG0714 COG0714, MoxR-like ATPases General function prediction only 110833314 Common rpmA 50S ribosomal protein L27 ABO_0453 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 110833826 Common - multidrug/solvent RND membrane fusion protein, putative ABO_0965 156 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110833535 Common - hypothetical protein ABO_0674 11 None None None 110834929 Common - hypothetical protein ABO_2068 8 None None None 110833039 Common gmk-2 guanylate kinase ABO_0178 214 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 110833309 Common - hypothetical protein ABO_0448 20 None None None 110835606 Common - hypothetical protein ABO_2745 146 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 110833612 Common ruvC endonuclease RuvC ABO_0751 197 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 110834602 Common pyrF orotidine-5'-phosphate decarboxylase ABO_1741 154 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 110834087 Common nhaB sodium/proton antiporter ABO_1226 27 COG3067 NhaB, Na+/H+ antiporter Inorganic ion transport and metabolism 110833081 Common - hypothetical protein ABO_0220 20 COG4963 CpaE, Flp pilus assembly protein, ATPase CpaE Intracellular trafficking and secretion 110833390 Common gatC glutamyl-tRNA(Gln) amidotransferase, C subunit ABO_0529 160 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 110834213 Common adhB alcohol dehydrogenase ABO_1352 161 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 110834310 Common hrpB HrpB ABO_1449 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 110835101 Common rpmE 50S ribosomal protein L31 ABO_2240 192 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 110833148 Common - hypothetical protein ABO_0287 3 None None None 110834641 Common - hypothetical protein ABO_1780 42 COG1695 COG1695, Predicted transcriptional regulators Transcription 110834471 Common rnfB electron transport complex protein rnfB, putative ABO_1610 137 COG2878 COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB Energy production and conversion 110834714 Common - sensor histidine kinase/response regulator, putative ABO_1853 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110833382 Common - TPR domain protein ABO_0521 124 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 110833802 Common - glycosyl transferase, group 2 family protein, putative ABO_0941 209 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110833432 Common - acyl-CoA dehydrogenase ABO_0571 165 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110833808 Common smc chromosome segregation SMC protein ABO_0947 199 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 110834519 Nonpathogen - none ABO_1658 1 None None None 110835415 Nonpathogen - hypothetical protein ABO_2554 1 None None None 110834527 Nonpathogen - Superfamily I DNA and RNA helicases domain protein ABO_1666 1 None None None 110833468 Common secA Preprotein translocase, SecA subunit ABO_0607 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 110835476 Common tktA transketolase ABO_2615 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 110835091 Common - hypothetical protein ABO_2230 10 COG3266 DamX, Uncharacterized protein conserved in bacteria Function unknown 110833545 Common - translation elongation factor P ABO_0684 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 110834202 Common anr transcriptional regulator Anr ABO_1341 134 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110835289 Common - glyoxalase family protein ABO_2428 14 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 110835307 Common efp translation elongation factor P ABO_2446 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 110833621 Common - hypothetical protein ABO_0760 61 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 110834149 Common aat leucyl/phenylalanyl-tRNA--protein transferase ABO_1288 134 COG2360 Aat, Leu/Phe-tRNA-protein transferase Posttranslational modification, protein turnover, chaperones 110832922 Common - alcohol dehydrogenase ABO_0061 165 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 110834287 Common - hypothetical protein ABO_1426 8 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 110833841 Common qor quinone oxidureductase, putative ABO_0980 175 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 110834897 Common cyoB cytochrome c oxidase, subunit I ABO_2036 167 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 110835544 Common pstA phosphate ABC transporter permease protein ABO_2683 223 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 110834273 Common ada methylated-DNA-[protein]-cysteine S-methyltransferase ABO_1412 209 COG2169 Ada, Adenosine deaminase Nucleotide transport and metabolism 110835560 Common - Phospholipase D/Transphosphatidylase family protein ABO_2699 125 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 110834047 Common - CorA-like Mg2+ transporter protein ABO_1186 85 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 110835076 Common - heptosyltransferase II, putatative ABO_2215 103 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 110833120 Common algQ anti-RNA polymerase sigma 70 factor ABO_0259 24 COG3160 Rsd, Regulator of sigma D Transcription 110834448 Common - soluble lytic transglycosylase, putative ABO_1587 170 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 110835329 Common tnpA transposase ABO_2468 66 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 110834847 Common - two-component sensor histidine kinase protein, putative ABO_1986 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110834965 Common pldA outer membrane phospholipase A precursor ABO_2104 51 COG2829 PldA, Outer membrane phospholipase A Cell envelope biogenesis, outer membrane 110834379 Common - hypothetical protein ABO_1518 62 COG3220 COG3220, Uncharacterized protein conserved in bacteria Function unknown 110834919 Common - hypothetical protein ABO_2058 170 COG0344 COG0344, Predicted membrane protein Function unknown 110833117 Common bioA 7,8-diaminononanoate transaminase ABO_0256 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 110835149 Common p450 cytochrome P450 ABO_2288 78 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 110834745 Nonpathogen - hypothetical protein ABO_1884 3 None None None 110835362 Common waaA 3-deoxy-D-manno-octulosonic-acid transferase ABO_2501 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 110833285 Common - hypothetical protein ABO_0424 17 COG3805 DodA, Aromatic ring-cleaving dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 110832917 Nonpathogen - hypothetical protein ABO_0056 2 None None None 110833394 Common maf-1 maf protein ABO_0533 196 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 110833141 Common cysQ inositol 1-phosphatase ABO_0280 182 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 110834497 Common algM AlgM ABO_1636 24 COG3086 RseC, Positive regulator of sigma E activity Signal transduction mechanisms 110833248 Common algK alginate biosynthesis regulator ABO_0387 5 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 110834976 Common - hypothetical protein ABO_2115 18 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 110833263 Common rplV 50S ribosomal protein L22 ABO_0402 228 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 110835435 Common - hypothetical protein ABO_2574 3 None None None 110834589 Common lasT RNA methyltransferase, TrmH family, group 1 ABO_1728 155 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 110834903 Common rpe ribulose-phosphate 3-epimerase ABO_2042 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 110834347 Common - hypothetical protein ABO_1486 8 None None None 110834819 Common rlpA lipoprotein, rare lipoprotein A family ABO_1958 136 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 110833491 Common ampG muropeptide permease ampG, putative ABO_0630 105 None None None 110835203 Common - redox protein, putative ABO_2342 40 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 110833340 Common clpB ATP-dependent Clp protease, ATP-binding subunit ClpB ABO_0479 216 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 110834268 Common - sugar kinase, putative ABO_1407 182 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 110833881 Common hpt hypoxanthine phosphoribosyltransferase ABO_1020 154 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 110833167 Common - Na+-dependent transporters of the SNF family ABO_0306 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 110833058 Common - metal-dependent hydrolase, putative ABO_0197 24 COG3687 COG3687, Predicted metal-dependent hydrolase General function prediction only 110835256 Nonpathogen - hypothetical protein ABO_2396 1 None None None 110833763 Common - outer membrane lipoprotein Blc, putative ABO_0902 70 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 110834920 Common gcp Glycoprotease family protein ABO_2059 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 110834556 Common deaD ATP-dependent RNA helicase, DEAD box family ABO_1695 242 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110834828 Common exbB2 MotA/TolQ/ExbB proton channel family protein ABO_1967 79 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 110833982 Common fadE acyl-CoA dehydrogenase ABO_1121 150 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110835552 Common - sensory box protein ABO_2691 193 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 110835045 Common - hypothetical protein ABO_2184 25 None None None 110834599 Common - hypothetical protein ABO_1738 57 COG3608 COG3608, Predicted deacylase General function prediction only 110835213 Common - hypothetical protein ABO_2352 3 None None None 110833667 Common hom homoserine dehydrogenase ABO_0806 217 COG0460 ThrA, Homoserine dehydrogenase Amino acid transport and metabolism 110834196 Common - magnesium/cobalt transporter, MIT family ABO_1335 136 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 110835519 Common mnhAB putative monovalent cation/H+ antiporter subunit A ABO_2658 209 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 110834399 Common - hypothetical protein ABO_1538 23 COG5460 COG5460, Uncharacterized conserved protein Function unknown 110834023 Common pyrG CTP synthetase ABO_1162 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 110833518 Common - decarboxylase family protein, putative ABO_0657 39 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 110834674 Common - hypothetical protein ABO_1813 99 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110834243 Common czcB3 heavy metal RND efflux membrane fusion protein,CzcB family ABO_1382 104 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110835601 Nonpathogen - hypothetical protein ABO_2740 1 None None None 110834550 Nonpathogen bfrA exogenous ferric siderophore receptor ABO_1689 1 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 110834114 Common - conserved hypothetical protein containing rhodanese domain ABO_1253 111 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 110833652 Common - MutT/nudix family protein ABO_0791 130 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 110833983 Common trx-1 thioredoxin ABO_1122 226 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 110833931 Common acpP acyl carrier protein ABO_1070 181 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110835533 Common - hypothetical protein predicted ABO_2672 40 COG2900 SlyX, Uncharacterized protein conserved in bacteria Function unknown 110835517 Common mnhD multisubunit Na+/H+ antiporter, MnhD subunit ABO_2656 206 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 110833895 Common nqrC Na(+)-translocating NADH-quinone reductase subunit C ABO_1034 47 COG2869 NqrC, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC Energy production and conversion 110834720 Common hisS Histidyl-tRNA synthetase ABO_1859 248 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110834821 Common dat d-alanine aminotransferase ABO_1960 192 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 110833277 Common rplO 50S ribosomal protein L15 ABO_0416 208 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 110833070 Common slmA nucleoid occlusion protein ABO_0209 64 COG1309 AcrR, Transcriptional regulator Transcription 110835588 Common atpG ATP synthase, gamma subunit ABO_2727 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 110834167 Common pgsA CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltrans ABO_1306 204 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 110833860 Common - hypothetical protein ABO_0999 18 None None None 110834631 Nonpathogen - hypothetical protein ABO_1770 1 None None None 110834499 Common algS sigma factor algU negative regulatory protein AlgS ABO_1638 4 COG3073 RseA, Negative regulator of sigma E activity Signal transduction mechanisms 110835011 Common ectA DABA acetyltransferase ABO_2150 29 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 110835464 Common - hypothetical protein ABO_2603 36 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 110834306 Common - sugar aldolase, putative ABO_1445 69 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 110833215 Common hemL glutamate-1-semialdehyde 2,1-aminomutase ABO_0354 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 110835038 Common - putative ABC transporter ATP-binding protein ABO_2177 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 110835085 Nonpathogen - hypothetical protein ABO_2224 1 None None None 110833414 Common - ABC transporter, ATP-binding protein, putative ABO_0553 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 110834207 Common - hypothetical protein ABO_1346 23 COG3198 COG3198, Uncharacterized protein conserved in bacteria Function unknown 110834132 Common - acetyltransferase ABO_1271 87 COG2153 ElaA, Predicted acyltransferase General function prediction only 110833650 Common - DNA-binding response regulator, LuxR family ABO_0789 142 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 110834482 Common - outer membrane porin, putative ABO_1621 34 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 110833251 Common algJ Alginate O-acetylation protein AlgJ ABO_0390 5 None None None 110835498 Common - hypothetical protein ABO_2637 64 COG2391 COG2391, Predicted transporter component General function prediction only 110834337 Common amtB2 ammonium transporter, putative ABO_1476 200 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 110834852 Common upp uracil phosphoribosyltransferase ABO_1991 166 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 110835261 Nonpathogen - hypothetical protein ABO_2400 1 None None None 110833356 Common pepA leucyl aminopeptidase ABO_0495 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 110833002 Common - hypothetical protein ABO_0141 3 COG3529 COG3529, Predicted nucleic-acid-binding protein containing a Zn-ribbon domain General function prediction only 110832876 Common - hypothetical protein ABO_0015 51 COG1289 COG1289, Predicted membrane protein Function unknown 110833571 Common nrdB ribonucleotide-diphosphate reductase subunit beta ABO_0710 156 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 110834466 Nonpathogen - hypothetical protein ABO_1605 1 None None None 110835527 Common - GAF/PAS/GGDEF domain protein ABO_2666 189 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 110835156 Common - glycosyltransferase ABO_2295 189 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110835306 Common - hypothetical protein ABO_2445 126 COG1509 KamA, Lysine 2,3-aminomutase Amino acid transport and metabolism 110835316 Common - hypothetical protein ABO_2455 3 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 110834565 Common - NADH:flavin oxidoreductase/NADH Oxidase, putative ABO_1704 179 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 110834321 Common trpA tryptophan synthase, alpha subunit ABO_1460 217 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 110833932 Common fabF 3-oxoacyl-[acyl-carrier-protein] synthase ABO_1071 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110833997 Common - efflux transporter, membrane fusion protein, putative ABO_1136 141 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 110834959 Common fadE acyl-CoA dehydrogenase ABO_2098 147 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110833321 Common - signal peptidase II ABO_0460 181 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110834377 Common - vacJ lipoprotein, putative ABO_1516 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 110834738 Common - Ham1 family protein ABO_1877 119 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 110834501 Nonpathogen - hypothetical protein ABO_1640 1 None None None 110834195 Common - hypothetical protein ABO_1334 39 COG3145 AlkB, Alkylated DNA repair protein DNA replication, recombination, and repair 110835237 Common cobC cobalamin biosynthesis protein CobC ABO_2376 199 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 110833869 Common - hypothetical protein ABO_1008 22 COG4446 COG4446, Uncharacterized protein conserved in bacteria Function unknown 110833416 Common - hypothetical protein ABO_0555 3 COG3117 COG3117, Uncharacterized protein conserved in bacteria Function unknown 110835110 Common hisE phosphoribosyl-ATP pyrophosphatase ABO_2249 179 COG0140 HisI, Phosphoribosyl-ATP pyrophosphohydrolase Amino acid transport and metabolism 110835133 Common secB protein-transport protein SecB ABO_2272 107 COG1952 SecB, Preprotein translocase subunit SecB Intracellular trafficking and secretion 110834784 Common - hypothetical protein ABO_1923 5 None None None 110833737 Common - transferase ABO_0876 107 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 110834320 Common accD acetyl-CoA carboxylase, carboxyl transferase ABO_1459 181 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 110833233 Common secE preprotein translocase, SecE subunit ABO_0372 28 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 110835423 Common - hypothetical protein ABO_2562 25 COG3687 COG3687, Predicted metal-dependent hydrolase General function prediction only 110834139 Common moaD molybdenum cofactor biosynthesis protein D ABO_1278 60 COG1977 MoaD, Molybdopterin converting factor, small subunit Coenzyme metabolism 110835388 Common - phosphoenolpyruvate-protein phosphotransferase fragment ABO_2527 68 COG3605 PtsP, Signal transduction protein containing GAF and PtsI domains Signal transduction mechanisms 110835132 Common trmH RNA methyltransferase, TrmH family ABO_2271 160 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 110834292 Common acna aconitate hydratase ABO_1431 223 COG1048 AcnA, Aconitase A Energy production and conversion 110834223 Common copB copper resistance protein B precursor ABO_1362 41 COG3667 PcoB, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 110835351 Nonpathogen - hypothetical protein ABO_2490 8 None None None 110833027 Common phoB Phosphate regulon transcriptional regulatory protein phoB. ABO_0166 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110834236 Common - hypothetical protein ABO_1375 26 None None None 110833914 Common exbB1 MotA/TolQ/ExbB proton channel family protein ABO_1053 75 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 110833576 Common - GGDEF domain protein ABO_0715 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 110833157 Common icd isocitrate dehydrogenase ABO_0296 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 110832964 Common cheB protein-glutamate methylesterase ABO_0103 141 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 110834406 Common wrbA trp repressor binding protein ABO_1545 108 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 110834436 Common - hypothetical protein ABO_1575 15 None None None 110833477 Nonpathogen - hypothetical protein ABO_0616 4 None None None 110833194 Common pnp polynucleotide phosphorylase/polyadenylase ABO_0333 243 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 110835477 Common - transcriptional regulator, ArsR family ABO_2616 106 COG0640 ArsR, Predicted transcriptional regulators Transcription 110833447 Common - lipoprotein, putative ABO_0586 53 COG3107 LppC, Putative lipoprotein General function prediction only 110834256 Common - hypothetical protein ABO_1395 10 COG1579 COG1579, Zn-ribbon protein, possibly nucleic acid-binding General function prediction only 110833977 Common - hypothetical protein ABO_1116 57 COG3228 COG3228, Uncharacterized protein conserved in bacteria Function unknown 110834639 Common - hypothetical protein ABO_1778 30 COG3751 EGL-9, Predicted proline hydroxylase Posttranslational modification, protein turnover, chaperones 110833301 Common - ATPase, AAA family ABO_0440 94 COG0714 COG0714, MoxR-like ATPases General function prediction only 110833839 Nonpathogen - hypothetical protein ABO_0978 1 None None None 110834726 Common - cysteine desulfurase activator complex subunit SufB ABO_1865 184 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 110834873 Common - hypothetical protein ABO_2012 19 None None None 110834615 Common gph phosphoglycolate phosphatase ABO_1754 169 COG0546 Gph, Predicted phosphatases General function prediction only 110832904 Common estA lipase/esterase ABO_0043 136 COG0657 Aes, Esterase/lipase Lipid metabolism 110833103 Common - hypothetical protein ABO_0242 23 COG3490 COG3490, Uncharacterized protein conserved in bacteria Function unknown 110833421 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase ABO_0560 211 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 110835023 Common - Dihydrouridine synthase protein family, putative ABO_2162 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 110833924 Common - peptidase ABO_1063 190 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 110832941 Common ggt gamma-glutamyltransferase precursor ABO_0080 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 110834783 Common - Outer membrane protein W precursor. ABO_1922 69 COG3047 OmpW, Outer membrane protein W Cell envelope biogenesis, outer membrane 110835025 Common xseB Exodeoxyribonuclease VII, small subunit ABO_2164 95 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 110834798 Common - metal ion transporter ABO_1937 215 COG4535 CorC, Putative Mg2+ and Co2+ transporter CorC Inorganic ion transport and metabolism 110833012 Nonpathogen - hypothetical protein ABO_0151 1 None None None 110834952 Common foxA Ferrioxamine receptor precursor ABO_2091 122 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 110834291 Common - hypothetical protein ABO_1430 55 COG2828 COG2828, Uncharacterized protein conserved in bacteria Function unknown 110834768 Common - hypothetical protein ABO_1907 23 COG4539 COG4539, Predicted membrane protein Function unknown 110835418 Common - CBS domain protein, putative ABO_2557 106 COG2524 COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains Transcription 110833317 Common rpsT 30S ribosomal protein S20. ABO_0456 202 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 110834170 Common - sensory box protein/response regulator ABO_1309 223 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 110835324 Common rho transcription termination factor Rho ABO_2463 207 COG1158 Rho, Transcription termination factor Transcription 110835352 Common - hypothetical protein ABO_2491 15 None None None 110835083 Common - phosphoric monoester hydrolase ABO_2222 44 COG2045 COG2045, Phosphosulfolactate phosphohydrolase and related enzymes Coenzyme metabolism / General function prediction only 110835295 Common mtgA peptidoglycantransglycosylase ABO_2434 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 110834014 Common lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamineN-acyltransferase ABO_1153 139 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 110833030 Common oxyR Activator of hydrogen peroxide-inducible genes OxyR ABO_0169 186 COG0583 LysR, Transcriptional regulator Transcription 110835343 Common - Amidase ABO_2482 208 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 110835064 Common hfq host factor-I protein Hfg ABO_2203 127 COG1923 Hfq, Uncharacterized host factor I protein General function prediction only 110833377 Common pth peptidyl-tRNA hydrolase ABO_0516 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 110834740 Common - hypothetical protein ABO_1879 29 COG3806 ChrR, Transcriptional activator Transcription 110833130 Common envZ Osmolarity sensor protein EnvZ ABO_0269 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110833615 Common - hypothetical protein ABO_0754 143 COG0824 FcbC, Predicted thioesterase General function prediction only 110834531 Nonpathogen - hypothetical protein ABO_1670 1 None None None 110835189 Common lysA diaminopimelate decarboxylase ABO_2328 219 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 110832878 Common - secretion protein HlyD family ABO_0017 92 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 110834523 Common cbpA curved-DNA-binding protein, DnaJ family ABO_1662 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 110834790 Nonpathogen - hypothetical protein ABO_1929 1 None None None 110835207 Common - hypothetical protein ABO_2346 74 COG0730 COG0730, Predicted permeases General function prediction only 110833451 Common - methyltransferase ABO_0590 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 110835304 Common - hypothetical protein ABO_2443 176 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 110833163 Common pdxH pyridoxamine-phosphate oxidase ABO_0302 132 COG0259 PdxH, Pyridoxamine-phosphate oxidase Coenzyme metabolism 110834019 Common dnaE DNA polymerase III subunit alpha ABO_1158 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 110835057 Common - hypothetical protein ABO_2196 45 COG3211 PhoX, Predicted phosphatase General function prediction only 110834024 Common kdsA-1 2-dehydro-3-deoxyphosphooctonate aldolase ABO_1163 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 110833035 Common - hypothetical protein ABO_0174 23 None None None 110834117 Common modC molybdate ABC transporter ATP-binding protein ABO_1256 245 COG4148 ModC, ABC-type molybdate transport system, ATPase component Inorganic ion transport and metabolism 110834313 Common - hypothetical protein ABO_1452 41 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 110832948 Common aldH aldehyde dehydrogenase ABO_0087 219 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 110833533 Common - oxidoreductase ABO_0672 66 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 110834569 Common - sensor histidine kinase ABO_1708 149 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110834543 Common - carbonic anhydrase, family 3 protein, putative ABO_1682 183 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 110832950 Common - hypothetical protein ABO_0090 199 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 110833415 Common - hypothetical protein ABO_0554 45 COG1934 COG1934, Uncharacterized protein conserved in bacteria Function unknown 110833379 Common - ribose-phosphate pyrophosphokinase ABO_0518 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 110834124 Common - oxidoreductase ABO_1263 149 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110835463 Common - hypothetical protein ABO_2602 10 None None None 110834882 Common speD S-adenosylmethionine decarboxylase ABO_2021 30 COG1586 SpeD, S-adenosylmethionine decarboxylase Amino acid transport and metabolism 110833798 Common algC phosphomannomutase ABO_0937 239 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 110833250 Common algI Alginate O-acetylation protein AlgI ABO_0389 86 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 110834298 Common cysB transcriptional regulator CysB ABO_1437 187 COG0583 LysR, Transcriptional regulator Transcription 110833507 Common - hyphotetical protein ABO_0646 3 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 110835359 Common adpP ADPribose pyrophosphatase ABO_2498 112 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 110834444 Common lexA-2 LexA repressor ABO_1583 137 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 110834732 Common sufE Fe-S metabolism associated domain protein ABO_1871 98 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 110833715 Common - hypothetical protein ABO_0854 15 None None None 110834751 Common - hypothetical protein ABO_1890 46 COG3665 COG3665, Uncharacterized conserved protein Function unknown 110834549 Common - TonB-dependent siderophore receptor ABO_1688 124 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 110834791 Common - hypothetical protein ABO_1930 12 None None None 110835039 Common - hypothetical protein ABO_2178 8 None None None 110833557 Common plsC3 1-acyl-sn-glycerol-3-phosphate acyltransferase ABO_0696 32 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 110833680 Common - hypothetical protein ABO_0819 19 COG2314 XynA, Predicted membrane protein Function unknown 110834488 Common gacS sensor/response regulator hybrid ABO_1627 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110835493 Common - peroxiredoxin family protein/glutaredoxin, putative ABO_2632 101 COG0678 AHP1, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110834695 Common - hypothetical protein ABO_1834 38 COG2378 COG2378, Predicted transcriptional regulator Transcription 110835168 Nonpathogen - hypothetical protein ABO_2307 1 None None None 110834825 Common lipA lipoyl synthase ABO_1964 192 COG0320 LipA, Lipoate synthase Coenzyme metabolism 110833495 Common groEL chaperonin, 60 kDa ABO_0634 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 110834380 Nonpathogen - hypothetical protein ABO_1519 1 None None None 110834110 Common - hypothetical protein ABO_1249 75 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 110834333 Common - hypothetical protein ABO_1472 74 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 110834142 Common icd isocitrate dehydrogenase (NADP-dependent) ABO_1281 65 COG2838 Icd, Monomeric isocitrate dehydrogenase Energy production and conversion 110834276 Common - MFS transporter ABO_1414 88 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 110834302 Nonpathogen - hypothetical protein ABO_1441 2 None None None 110833694 Common - acyl-CoA dehydrogenase family protein ABO_0833 148 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110835383 Common - probable RND efflux transporter ABO_2522 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 110833096 Common - hypothetical protein ABO_0235 61 COG3096 MukB, Uncharacterized protein involved in chromosome partitioning Cell division and chromosome partitioning 110835540 Common arsC-3 Arsenate reductase ABO_2679 132 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 110833678 Common - alcohol dehydrogenase, zinc-containing, putative ABO_0817 174 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 110832914 Common - acetyltransferase, CysE/LacA/LpxA/NodL family ABO_0053 154 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 110833567 Nonpathogen - hypothetical protein ABO_0706 1 None None None 110833656 Common - membrane protein, probable ABO_0795 218 COG4536 CorB, Putative Mg2+ and Co2+ transporter CorB Inorganic ion transport and metabolism 110834007 Common frr Ribosome recycling factor ABO_1146 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 110834411 Common - hypothetical protein ABO_1550 3 None None None 110833620 Common - Peptidogycan-associated lipoprotein ABO_0759 151 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110833875 Common - hypothetical protein ABO_1014 28 None None None 110834802 Common - metallo-beta-lactamase family protein ABO_1941 203 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 110833539 Common - Serine endopeptidase/trypsin-like serine proteinase family protein ABO_0678 23 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 110835616 Common rpmH ribosomal protein L34 ABO_2755 40 None None None 110833126 Common pilH regulatory protein pilH family ABO_0265 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110834769 Common - hypothetical protein ABO_1908 130 COG1704 LemA, Uncharacterized conserved protein Function unknown 110834115 Common modA molybdate ABC transporter periplasmic binding protein ABO_1254 73 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 110835192 Common - hypothetical protein ABO_2331 84 COG2961 ComJ, Protein involved in catabolism of external DNA General function prediction only 110835265 Common - short chain dehydrogenase ABO_2404 235 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110833161 Common - hypothetical protein ABO_0300 43 COG3268 COG3268, Uncharacterized conserved protein Function unknown 110834701 Common rpmI 50S ribosomal protein L35 ABO_1840 157 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 110834226 Common phoP DNA-binding heavy metal response regulator, putative ABO_1365 210 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110834405 Common arsC arsenate reductase ABO_1544 105 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 110833064 Common - FAD-dependent oxidoreductase family protein ABO_0203 242 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 110835401 Common - cytochrome c5, putative ABO_2540 42 COG3245 CycB, Cytochrome c5 Energy production and conversion 110833744 Common - hypothetical protein ABO_0883 33 None None None 110835276 Common dhmA haloalkane dehalogenase ABO_2415 132 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110832988 Common trkH potassium uptake protein, TrkH family ABO_0127 140 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 110833131 Common - glycosidases ABO_0270 103 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 110835157 Common waaP2 Lipopolysaccharide core kinase ABO_2296 10 None None None 110835030 Common thiL thiamine-phosphate kinase ABO_2169 182 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 110833403 Common - peptidylprolyl isomerase ABO_0542 58 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 110834610 Common pheA P-protein, chorismate mutase/prephenate dehydratase ABO_1749 213 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 110833503 Nonpathogen - hypothetical protein ABO_0642 1 None None None 110835377 Common - hypothetical protein ABO_2516 12 None None None 110834671 Common - ferredoxin, 4Fe-4S ABO_1810 149 COG1146 COG1146, Ferredoxin Energy production and conversion 110834917 Common folK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokin a se ABO_2056 183 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 110835055 Nonpathogen - hypothetical protein ABO_2194 1 None None None 110833172 Nonpathogen - hypothetical protein ABO_0311 5 COG1714 COG1714, Predicted membrane protein/domain Function unknown 110833592 Common - hypothetical protein ABO_0731 4 None None None 110833812 Common - hypothetical protein ABO_0951 4 None None None 110834199 Common - hypothetical protein ABO_1338 86 COG3022 COG3022, Uncharacterized protein conserved in bacteria Function unknown 110834830 Nonpathogen exbD3 ferric siderophore transport system,innermembrane protein E ABO_1969 1 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 110834932 Nonpathogen - hypothetical protein ABO_2071 1 None None None 110835252 Common hprA glycerate dehydrogenase ABO_2391 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 110835096 Common pilO Type 4 fimbrial biogenesis protein pilO ABO_2235 48 COG3167 PilO, Tfp pilus assembly protein PilO Cell motility and secretion / Intracellular trafficking and secretion 110835258 Common - dioxygenase ferredoxin reductase component ABO_2397 38 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 110833137 Common hslO chaperonin, 33 kDa ABO_0276 132 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 110834393 Common - hypothetical protein ABO_1532 7 None None None 110834578 Common - Flavodoxin reductases (ferredoxin-NADPH reductase)putative ABO_1717 135 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 110833396 Common - carbon-nitrogen hydrolase family protein ABO_0535 200 COG0388 COG0388, Predicted amidohydrolase General function prediction only 110834237 Common - hypothetical protein ABO_1376 34 None None None 110833649 Common - MutT/nudix family protein ABO_0788 109 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 110834033 Common - cation efflux family protein ABO_1172 212 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 110833853 Common - transcriptional regulator, TetR family ABO_0992 114 COG1309 AcrR, Transcriptional regulator Transcription 110833370 Common - aminotransferase, putative ABO_0509 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 110835217 Common - predicted metal-binding protein ABO_2356 64 COG3019 COG3019, Predicted metal-binding protein General function prediction only 110833529 Common - hydrolase ABO_0668 128 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110834421 Common - hypothetical protein ABO_1560 109 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 110834093 Common yhaE 2-hydroxy-3-oxopropionate reductase ABO_1232 191 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 110835605 Common cspG cold-shock domain family protein ABO_2744 183 COG1278 CspC, Cold shock proteins Transcription 110833832 Nonpathogen - hypothetical protein ABO_0971 1 None None None 110833424 Common hisC-1 histidinol-phosphate aminotransferase ABO_0563 228 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 110833967 Common - hypothetical protein ABO_1106 89 COG2308 COG2308, Uncharacterized conserved protein Function unknown 110835220 Common pcoA copper resistance protein A precursor ABO_2359 126 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 110833889 Common mfd transcription-repair coupling factor ABO_1028 234 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 110834362 Common gltA type II citrate synthase ABO_1501 194 COG0372 GltA, Citrate synthase Energy production and conversion 110835451 Nonpathogen - hypothetical protein ABO_2590 2 None None None 110833308 Common - hypothetical protein ABO_0447 61 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 110834875 Common fis DNA-binding protein Fis ABO_2014 97 COG2901 Fis, Factor for inversion stimulation Fis, transcriptional activator Transcription / DNA replication, recombination, and repair 110834571 Common - hypothetical protein ABO_1710 16 COG3212 COG3212, Predicted membrane protein Function unknown 110834135 Common - hypothetical protein ABO_1274 41 COG2915 COG2915, Uncharacterized protein involved in purine metabolism General function prediction only 110834002 Common glnD PII uridylyl-transferase ABO_1141 123 COG2844 GlnD, UTP:GlnB (protein PII) uridylyltransferase Posttranslational modification, protein turnover, chaperones 110834428 Common fadA Acetyl CoA acetyltransferase (thiolase) ABO_1567 167 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 110833634 Common perM permease PerM ABO_0773 101 COG0628 PerM, Predicted permease General function prediction only 110834992 Common - peptidase, M23/M37 family ABO_2131 172 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 110835365 Nonpathogen - hypothetical protein ABO_2504 1 None None None 110835571 Common alkJ alcohol dehydrogenase ABO_2710 95 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 110835116 Common - hypothetical protein ABO_2255 15 None None None 110835337 Common - hypothetical protein ABO_2476 81 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 110835176 Common - oxidoreductase, iron-sulfur-binding ABO_2315 90 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 110833413 Common rpoN RNA polymerase sigma-54 factor ABO_0552 145 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 110833156 Nonpathogen - hypothetical protein ABO_0295 1 None None None 110834334 Common aroC chorismate synthase ABO_1473 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 110834392 Common msrb methionine sulfoxide reductase B ABO_1531 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 110835251 Common - hypothetical protein ABO_2390 136 COG0432 COG0432, Uncharacterized conserved protein Function unknown 110833981 Common minC septum site-determining protein MinC ABO_1120 108 COG0850 MinC, Septum formation inhibitor Cell division and chromosome partitioning 110833542 Common - hypothetical protein ABO_0681 24 COG3369 COG3369, Uncharacterized conserved protein Function unknown 110834465 Common - hypothetical protein ABO_1604 12 None None None 110834245 Common - hypothetical protein ABO_1384 59 COG3825 COG3825, Uncharacterized protein conserved in bacteria Function unknown 110833461 Common ddlB D-alanine-D-alanine ligase B ABO_0600 220 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 110834916 Common - hypothetical protein ABO_2055 6 None None None 110833089 Nonpathogen - hypothetical protein ABO_0228 1 None None None 110834198 Nonpathogen - hypothetical protein ABO_1337 1 None None None 110834504 Common - hypothetical protein ABO_1643 28 COG2938 COG2938, Uncharacterized conserved protein Function unknown 110834953 Common - peptide synthetase, putative ABO_2092 217 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 110833247 Common alg44 alginate biosynthesis protein Alg44 ABO_0386 2 None None None 110835243 Common moeA molybdopterin biosynthesis MoeA protein ABO_2382 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 110833437 Common rplM 50S ribosomal protein L13 ABO_0576 237 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 110834042 Common - hypothetical protein ABO_1181 134 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 110833227 Common tyrS tyrosine-tRNA ligase ABO_0366 241 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110835568 Common alkB1 alkane 1-monooxygenase ABO_2707 26 None None None 110833049 Common - predicted metal hydrolase, putative ABO_0188 25 COG3687 COG3687, Predicted metal-dependent hydrolase General function prediction only 110833095 Common - hypothetical protein ABO_0234 79 COG1360 MotB, Flagellar motor protein Cell motility and secretion 110834991 Common - 2-nitropropane dioxygenase, putative ABO_2130 128 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 110833333 Common pilS two-component sensor histidine kinase ABO_0472 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110833116 Common - ABC transporter, ATP-binding protein, permease, putative ABO_0254 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 110833520 Common dinP DNA polymerase IV ABO_0659 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 110835134 Common - glutaredoxin, putative ABO_2273 127 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 110834267 Nonpathogen - hypothetical protein ABO_1406 1 None None None 110835526 Common mvaB hydroxymethylglutaryl-CoA lyase ABO_2665 108 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 110833102 Common - hypothetical protein ABO_0241 23 COG3489 COG3489, Predicted periplasmic lipoprotein General function prediction only 110833952 Common - potassium channel protein ABO_1091 104 COG1226 Kch, Kef-type K+ transport systems, predicted NAD-binding component Inorganic ion transport and metabolism 110833006 Common fpr ferredoxin--NADP+ reductase ABO_0145 105 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 110833943 Common - transcriptional regulator, TetR family ABO_1082 79 COG1309 AcrR, Transcriptional regulator Transcription 110833515 Common - hypothetical protein ABO_0654 65 COG4301 COG4301, Uncharacterized conserved protein Function unknown 110834441 Common - transcriptional regulator, AraC family ABO_1580 76 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 110833671 Common - hypothetical protein ABO_0810 21 COG4323 COG4323, Predicted membrane protein Function unknown 110834338 Nonpathogen - hypothetical protein ABO_1477 2 None None None 110834944 Nonpathogen - hypothetical protein ABO_2083 6 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 110832958 Common - hypothetical protein ABO_0097 20 COG1585 COG1585, Membrane protein implicated in regulation of membrane protease activity Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 110835364 Common - oxidoreductase, ado/keto reductase family ABO_2503 194 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 110833629 Common - hypothetical protein ABO_0768 57 COG3496 COG3496, Uncharacterized conserved protein Function unknown 110833026 Common ubiA UbiA prenyltransferase ABO_0165 161 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 110834522 Common - hypothetical protein ABO_1661 28 None None None 110835160 Common waaP1 lipopolysaacharide kinase ABO_2299 7 None None None 110835422 Common nnrS hypothetical protein ABO_2561 52 COG3213 NnrS, Uncharacterized protein involved in response to NO Inorganic ion transport and metabolism 110832882 Common acdA acyl-CoA dehydrogenase ABO_0021 166 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110834350 Common htpG heat shock protein 90 ABO_1489 151 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 110833588 Common - hypothetical protein ABO_0727 39 COG4067 COG4067, Uncharacterized protein conserved in archaea Posttranslational modification, protein turnover, chaperones 110834166 Common uvrC excinuclease ABC, C subunit ABO_1305 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 110833214 Common ybaK protein ybaK ABO_0353 127 COG2606 EbsC, Uncharacterized conserved protein Function unknown 110833003 Nonpathogen - hypothetical protein ABO_0142 1 None None None 110833736 Common - ribosomal protein S6 modification protein-related protein ABO_0875 44 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 110833178 Common carA carbamoyl phosphate synthase small subunit ABO_0317 234 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 110834967 Common - transcriptional regulator, AraC family ABO_2106 73 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110833290 Common - major facilitator family transporter ABO_0429 130 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 110833347 Common pssA CDP-diacylglycerol-serine O-phosphatidyltransferase ABO_0486 144 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 110834555 Common - hypothetical protein ABO_1694 25 COG5266 CbiK, ABC-type Co2+ transport system, periplasmic component Inorganic ion transport and metabolism 110835444 Common mutM formamidopyrimidine-DNA glycosylase ABO_2583 180 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 110835007 Common dctP TRAP dicarboxylate transporter, extracellular solute binding protein ABO_2146 95 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 110834079 Common oppB oligopeptide ABC transporter, permease protein ABO_1218 219 COG4174 COG4174, ABC-type uncharacterized transport system, permease component General function prediction only 110834647 Common - transposase, putative ABO_1786 143 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 110833709 Common - hypothetical protein ABO_0848 13 None None None 110834364 Common mmsB 3-hydroxyisobutyrate dehydrogenase ABO_1503 196 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 110835218 Common - transporter, LysE family ABO_2357 27 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 110833274 Common rplR 50S ribosomal protein L18 ABO_0413 215 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 110834356 Common sucB dihydrolipoamide succinyltransferase ABO_1495 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 110833550 Common dctQ TRAP C4-dicarboxylate transporter ABO_0689 66 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 110834075 Common ppiD peptidylprolyl isomerase ABO_1214 149 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 110835262 Common nahD 2-hydroxychromene carboxylate isomerase ABO_2401 22 COG3917 NahD, 2-hydroxychromene-2-carboxylate isomerase Secondary metabolites biosynthesis, transport, and catabolism 110835516 Common mnhE putative monovalent cation/H+ antiporter subunit E ABO_2655 65 COG1863 MnhE, Multisubunit Na+/H+ antiporter, MnhE subunit Inorganic ion transport and metabolism 110834562 Common acdA acyl-CoA dehydrogenase, C-terminal domain ABO_1701 139 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110833446 Common - hypothetical protein ABO_0585 151 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 110834598 Common - ABC transporter, ATP-binding protein, putative ABO_1737 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 110832987 Common fimA Type-1 fimbrial protein, A chain precursor ABO_0126 11 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 110833643 Common - transcriptional regulator, GntR family ABO_0782 44 COG1802 GntR, Transcriptional regulators Transcription 110833082 Common - type II secretion system protein ABO_0221 222 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 110833662 Common rplS 50S ribosomal protein L19 ABO_0801 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 110833355 Common holC DNA polymerase III, chi subunit ABO_0494 62 COG2927 HolC, DNA polymerase III, chi subunit DNA replication, recombination, and repair 110835042 Common - hypothetical protein ABO_2181 7 None None None 110833078 Nonpathogen - hypothetical protein ABO_0217 1 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 110833648 Common - hypothetical protein ABO_0787 53 COG3323 COG3323, Uncharacterized protein conserved in bacteria Function unknown 110832888 Common acpD acyl carrier protein phosphodiesterase ABO_0027 98 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 110834074 Common dbh1 DNA-binding protein HU ABO_1213 202 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 110835350 Common - hypothetical protein ABO_2489 30 COG3122 COG3122, Uncharacterized protein conserved in bacteria Function unknown 110835328 Common - hypothetical protein ABO_2467 8 COG3616 COG3616, Predicted amino acid aldolase or racemase Amino acid transport and metabolism 110834450 Common - hypothetical protein ABO_1589 44 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 110834966 Common - hypothetical protein ABO_2105 14 COG5608 COG5608, Conserved secreted protein Function unknown 110833071 Common argB acetylglutamate kinase ABO_0210 219 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 110834842 Common - amino acid ABC transporter, ATP-binding protein, putative ABO_1981 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 110834494 Common lepB signal peptidase I; leader peptidase I ABO_1633 211 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 110834982 Nonpathogen - hypothetical protein ABO_2121 1 COG0782 GreA, Transcription elongation factor Transcription 110834050 Common - hypothetical protein ABO_1189 2 None None None 110835153 Common lpxL1 lipid A biosynthesis lauroyl acyltransferase ABO_2292 109 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 110833472 Common coae dephospho-CoA kinase ABO_0611 207 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 110833664 Common xerD integrase/recombinase XerD ABO_0803 231 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 110834803 Common - hypothetical protein ABO_1942 86 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 110834212 Common ccoN-1 cytochrome c oxidase, cbb3-type, subunit I ABO_1351 150 COG3278 CcoN, Cbb3-type cytochrome oxidase, subunit 1 Posttranslational modification, protein turnover, chaperones 110834244 Common czcA3 cobalt/zinc/cadmium efflux RND transporter,permease protein ABO_1383 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 110834286 Common - soluble lytic transglycosylase, putative ABO_1425 172 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 110833238 Common rplL 50S ribosomal protein L7/L12 ABO_0377 214 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 110835313 Common fadI 3-ketoacyl-CoA thiolase ABO_2452 175 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 110834660 Common - hypothetical protein ABO_1799 45 COG0730 COG0730, Predicted permeases General function prediction only 110834837 Common lipH lipase foldase ABO_1976 15 COG5380 LimK, Lipase chaperone Posttranslational modification, protein turnover, chaperones 110833482 Nonpathogen ampE inner membrane protein AmpE ABO_0621 1 COG3725 AmpE, Membrane protein required for beta-lactamase induction Defense mechanisms 110833226 Common - peptidase, M23/M37 family ABO_0365 193 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 110834123 Common - GGDEF domain protein ABO_1262 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 110833268 Common rplN 50S ribosomal protein L14 ABO_0407 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 110834669 Common tnpA transposase A ABO_1808 67 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 110834224 Common copA Copper resistance protein A precursor ABO_1363 127 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 110833042 Common - hypothetical protein ABO_0181 26 COG3687 COG3687, Predicted metal-dependent hydrolase General function prediction only 110835063 Common hflX GTP-binding protein HflX ABO_2202 212 COG2262 HflX, GTPases General function prediction only 110834911 Common apaH diadenosine tetraphosphatase ABO_2050 95 COG0639 ApaH, Diadenosine tetraphosphatase and related serine/threonine protein phosphatases Signal transduction mechanisms 110835062 Common hflK Protease subunit HflK ABO_2201 216 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 110834657 Common csrA carbon storage regulator CsrA ABO_1796 81 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 110834907 Common surA Survival protein surA precursor (Peptidyl-prolyl cis-trans isomerase surA) ABO_2046 162 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 110834999 Common - TonB-dependent receptor ABO_2138 107 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110833536 Common - transcriptional regulator, TetR family ABO_0675 113 COG1309 AcrR, Transcriptional regulator Transcription 110834277 Common - hypothetical protein ABO_1416 13 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 110833774 Common rmlA glucose-1-phosphate thymidylyltransferase ABO_0913 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 110833581 Common hyuB N-methylhydantoinase B, putative ABO_0720 93 COG0146 HyuB, N-methylhydantoinase B/acetone carboxylase, alpha subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110834681 Common recD Exodeoxyribonuclease V alpha chain ABO_1820 131 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 110833057 Common - short-chain dehydrogenase ABO_0196 235 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110834630 Common gpm Phosphoglycerate mutase ABO_1769 164 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 110834208 Common - iron-sulfur cluster-binding protein ABO_1347 80 COG0348 NapH, Polyferredoxin Energy production and conversion 110835587 Common atpD F0F1 ATP synthase subunit beta ABO_2726 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 110833790 Common - putative sodium/sulfate symporter ABO_0929 135 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 110833908 Common - peptidyl-arginine deiminase family protein, putative ABO_1047 88 COG2957 COG2957, Peptidylarginine deiminase and related enzymes Amino acid transport and metabolism 110834013 Common ompH outer membrane protein OmpH, putative ABO_1152 76 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 110835600 Common - acyl-CoA dehydrogenase ABO_2739 149 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110833497 Nonpathogen - hypothetical protein ABO_0636 1 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 110834628 Common - hypothetical protein ABO_1767 35 COG3100 COG3100, Uncharacterized protein conserved in bacteria Function unknown 110835522 Common - hypothetical protein ABO_2661 3 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 110832899 Common - hypothetical protein ABO_0038 120 COG2353 COG2353, Uncharacterized conserved protein Function unknown 110835147 Common - hypothetical protein ABO_2286 72 COG2924 COG2924, Uncharacterized protein conserved in bacteria Function unknown 110833467 Common - peptidase, M23/M37 family ABO_0606 190 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 110833259 Common rplD 50S ribosomal protein L4 ABO_0398 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 110833847 Common accA acetyl-CoA carboxylase ABO_0986 237 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 110832933 Common - hypothetical protein ABO_0072 22 COG1462 CsgG, Uncharacterized protein involved in formation of curli polymers Cell envelope biogenesis, outer membrane 110834605 Common ihfB integration host factor beta-subunit ABO_1744 203 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 110833760 Common yafM hypothetical protein ABO_0899 30 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 110835226 Common cobQ cobyric acid synthase ABO_2365 154 COG1492 CobQ, Cobyric acid synthase Coenzyme metabolism 110833324 Common pilN pilus biogenesis protein ABO_0463 8 COG4970 FimT, Tfp pilus assembly protein FimT Cell motility and secretion / Intracellular trafficking and secretion 110835599 Common - sodium/hydrogen exchanger family protein, putative ABO_2738 146 COG3263 COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain Inorganic ion transport and metabolism 110834822 Common - hypothetical protein ABO_1961 25 COG2921 COG2921, Uncharacterized conserved protein Function unknown 110832973 Common algH alginate biosynthesis regulator AlgH ABO_0112 130 COG1678 COG1678, Putative transcriptional regulator Transcription 110832991 Common fmt methionyl-tRNA formyltransferase ABO_0130 219 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 110833818 Common - acyl-CoA dehydrogenase ABO_0957 149 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110834815 Common - hypothetical protein ABO_1954 142 COG1576 COG1576, Uncharacterized conserved protein Function unknown 110832931 Common - hypothetical protein ABO_0070 9 COG5633 COG5633, Predicted periplasmic lipoprotein General function prediction only 110835344 Common - alcohol dehydrogenase ABO_2483 84 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 110833911 Common lolD Lipoprotein releasing system ATP-binding protein lolD ABO_1050 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 110833466 Nonpathogen - hypothetical protein ABO_0605 1 None None None 110834588 Common - hypothetical protein ABO_1727 25 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 110834318 Common - hypothetical protein ABO_1457 26 COG3147 DedD, Uncharacterized protein conserved in bacteria Function unknown 110834143 Common icdA isocitrate dehydrogenase (NADP-dependent) ABO_1282 222 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 110834989 Nonpathogen - iron-sulfur binding domain protein ABO_2128 1 COG1553 DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction Inorganic ion transport and metabolism 110833868 Common - hydrolase, TatD family ABO_1007 234 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 110834317 Common cvpA Colicin V production protein ABO_1456 85 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 110833700 Common - cytochrome c-type biogenesis protein ABO_0839 22 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 110834472 Common rnfC electron transport complex protein rnfC ABO_1611 136 COG4656 RnfC, Predicted NADH:ubiquinone oxidoreductase, subunit RnfC Energy production and conversion 110833564 Common - dehydrogenase ABO_0703 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 110834483 Common - MazG nucleotide pyrophosphohydrolase, putative ABO_1622 155 COG3956 COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain General function prediction only 110832920 Common - peptidyl-tRNA hydrolase ABO_0059 114 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 110833383 Common hemA glutamyl-tRNA reductase ABO_0522 180 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 110833750 Common - hypothetical protein ABO_0889 16 COG3868 COG3868, Uncharacterized conserved protein Function unknown 110834080 Common - oligopeptide ABC transporter, periplasmic peptide-binding pr ABO_1219 166 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 110835292 Common ahpC alkyl hydroperoxide reductase, C subunit ABO_2431 221 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110835411 Nonpathogen - hypothetical protein ABO_2550 1 None None None 110833313 Common rplU 50S ribosomal protein L21 ABO_0452 212 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 110835230 Common - Fe3+-siderophore ABC transporter permease protein ABO_2369 188 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 110833723 Common metR transcriptional activator MetR ABO_0862 182 COG0583 LysR, Transcriptional regulator Transcription 110833583 Common ydhD Glutaredoxin-related protein ABO_0722 126 COG0278 COG0278, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 110834107 Common - CBS domain protein, putative ABO_1246 147 COG2524 COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains Transcription 110835482 Common pykA pyruvate kinase (ATP-pyruvate 2-O-phosphotranferase) ABO_2621 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 110835286 Common - glutathione S-transferase ABO_2425 97 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 110834274 Common - hypothetical protein ABO_1413 107 COG0122 AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase DNA replication, recombination, and repair 110835590 Common atpH ATP synthase, delta subunit ABO_2729 181 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 110833510 Common sodB superoxide dismutase ABO_0649 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 110835202 Nonpathogen - hypothetical protein ABO_2341 2 None None None 110833376 Common - translation-associated GTPase ABO_0515 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 110834025 Common eno enolase ABO_1164 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 110833532 Common - oxidoreductase ABO_0671 62 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 110835155 Common - hypothetical protein ABO_2294 4 COG0478 COG0478, RIO-like serine/threonine protein kinase fused to N-terminal HTH domain Signal transduction mechanisms 110835268 Common - hypothetical protein ABO_2407 9 COG2995 PqiA, Uncharacterized paraquat-inducible protein A Function unknown 110833162 Common - hypothetical protein ABO_0301 99 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 110834730 Common iscA iron-binding protein IscA ABO_1869 162 COG0316 IscA, Uncharacterized conserved protein Function unknown 110833508 Common fabB 3-oxoacyl-(acyl-carrier-protein) synthase I ABO_0647 199 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110834524 Common - acyl-CoA synthetase ABO_1663 204 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110834586 Common - hypothetical protein ABO_1725 194 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 110833998 Common dapE succinyl-diaminopimelate desuccinylase ABO_1137 209 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 110834541 Common dksA1 DnaK suppressor protein homolog, DksA/TraR family ABO_1680 123 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 110832955 Common - hypothetical protein ABO_0094 27 COG3619 COG3619, Predicted membrane protein Function unknown 110834532 Common - hypothetical protein ABO_1671 16 COG0456 RimI, Acetyltransferases General function prediction only 110833556 Common - hypothetical protein ABO_0695 38 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 110834118 Nonpathogen - hypothetical protein predicted ABO_1257 3 None None None 110834109 Common mdh malate dehydrogenase ABO_1248 118 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 110834672 Common - two-component hybrid sensor and regulator ABO_1811 23 COG2198 ArcB, FOG: HPt domain Signal transduction mechanisms 110833164 Common - hypothetical protein ABO_0303 5 None None None 110835406 Common - transcriptional regulator, AraC family ABO_2545 60 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110833570 Common - hypothetical protein ABO_0709 15 None None None 110834542 Common - hypothetical protein ABO_1681 5 None None None 110833577 Common - GGDEF domain protein ABO_0716 177 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 110833805 Common aspC aspartate aminotransferase ABO_0944 236 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 110834297 Common - hypothetical protein ABO_1436 25 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 110834747 Common - dienelactone hydrolase family protein ABO_1886 104 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 110834687 Common - hypothetical protein ABO_1826 8 COG3177 COG3177, Uncharacterized conserved protein Function unknown 110832980 Common dhlA haloacid dehalogenase-like hydrolase, putative ABO_0119 115 COG0546 Gph, Predicted phosphatases General function prediction only 110833378 Common rplY 50S ribosomal protein L25/general stress protein Ctc ABO_0517 190 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 110835077 Common bioD dethiobiotin synthase ABO_2216 156 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 110833028 Common phoR Phosphate regulon sensor protein PhoR ABO_0167 219 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 110833448 Common - tetrapyrrole methylase family protein, putative ABO_0587 209 COG0313 COG0313, Predicted methyltransferases General function prediction only 110832976 Common - transcriptional regulator ABO_0115 52 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110834883 Common - hypothetical protein ABO_2022 88 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 110834355 Common lpdG 2-oxoglutarate dehydrogenase,lipoamidedehydrogenase compone ABO_1494 243 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 110834712 Common guaB inosine-5'-phosphate dehydrogenase ABO_1851 236 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 110835117 Common dtD D-tyrosyl-tRNA deacylase ABO_2256 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 110834299 Common - 5'-nucleotidase ABO_1438 30 None None None 110832993 Common - LysM domain protein ABO_0132 45 COG1652 XkdP, Uncharacterized protein containing LysM domain Function unknown 110835545 Common pstC phosphate ABC transporter permease protein ABO_2684 232 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 110833603 Common - hypothetical protein ABO_0742 137 COG0729 COG0729, Outer membrane protein Cell envelope biogenesis, outer membrane 110833365 Common secF Preprotein translocase SecF subunit ABO_0504 205 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 110833565 Common ilvB-2 acetolactate synthase ABO_0704 222 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 110834752 Common - hypothetical protein ABO_1891 55 COG3665 COG3665, Uncharacterized conserved protein Function unknown 110833681 Common purT formyltransferase ABO_0820 194 COG0027 PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Nucleotide transport and metabolism 110834970 Common - short chain dehydrogenase ABO_2109 235 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 110835294 Common - conserved hypothetical signal transduction protein ABO_2433 199 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 110834456 Common - NAD-glutamate dehydrogenase ABO_1595 76 COG2902 COG2902, NAD-specific glutamate dehydrogenase Amino acid transport and metabolism 110833169 Common omlA outer membrane lipoprotein OmlA ABO_0308 60 COG2913 SmpA, Small protein A (tmRNA-binding) Translation, ribosomal structure and biogenesis 110835398 Common rsuA pseudouridylate synthase ABO_2537 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 110834383 Common - hypothetical protein ABO_1522 56 COG3975 COG3975, Predicted protease with the C-terminal PDZ domain General function prediction only 110835144 Common - Sensor histidine kinase, putative ABO_2283 200 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110833935 Common dsbD-2 dTMP kinase; thymidylate kinase ABO_1074 227 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 110833593 Common - peptide-aspartate beta-dioxygenase ABO_0732 36 COG3555 COG3555, Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases Posttranslational modification, protein turnover, chaperones 110833923 Common - hydrolase, haloacid dehalogenase-like family, putative ABO_1062 178 COG0546 Gph, Predicted phosphatases General function prediction only 110834719 Common - hypothetical protein ABO_1858 63 COG2976 COG2976, Uncharacterized protein conserved in bacteria Function unknown 110833838 Common - hypothetical protein ABO_0977 16 COG4399 COG4399, Uncharacterized protein conserved in bacteria Function unknown 110835228 Common - acid--ammonia (or amine) ligases (amide synthases) ABO_2367 136 COG1797 CobB, Cobyrinic acid a,c-diamide synthase Coenzyme metabolism 110835135 Common - rhodanese domain protein, putative ABO_2274 158 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 110834614 Common ubiG 3-demethylubiquinone-9 3-O-methyltransferase ABO_1753 178 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 110834872 Common prmA Ribosomal protein L11 methyltransferase ABO_2011 173 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 110833465 Common lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase ABO_0604 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 110834341 Nonpathogen - hypothetical protein ABO_1480 2 None None None 110832887 Common - glutathione S-transferase domain protein ABO_0026 79 COG0435 ECM4, Predicted glutathione S-transferase Posttranslational modification, protein turnover, chaperones 110834680 Common recB Exodeoxyribonuclease V beta chain ABO_1819 221 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 110834797 Common - hypothetical protein ABO_1936 202 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 110833397 Common tldD TldD protein ABO_0536 170 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 110834238 Common czcA1 cobalt/zinc/cadmium efflux RND transporter,permease protein ABO_1377 179 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 110833688 Common - hypothetical protein ABO_0827 36 COG3752 COG3752, Predicted membrane protein Function unknown 110834225 Common copC copper-binding protein ABO_1364 28 COG4454 COG4454, Uncharacterized copper-binding protein Inorganic ion transport and metabolism 110833300 Nonpathogen - hypothetical protein ABO_0439 4 COG1359 COG1359, Uncharacterized conserved protein Function unknown 110834638 Common - heat-shock protein IbpA ABO_1777 88 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 110833038 Common rpoZ DNA-directed RNA polymerase, omega subunit ABO_0177 117 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 110834951 Common iucB siderophore biosynthesis protein ABO_2090 41 None None None 110834255 Common yciI YciI-like protein ABO_1394 73 COG2350 COG2350, Uncharacterized protein conserved in bacteria Function unknown 110832961 Common lpxL3 lipid A biosynthesis lauroyl acyltransferase ABO_0100 102 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 110835323 Common trx-2 thioredoxin ABO_2462 233 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 110833978 Nonpathogen - hypothetical protein ABO_1117 4 None None None 110833478 Common nadC NAD pyrophosphorylase ABO_0617 203 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 110834396 Common - transport protein, putative ABO_1535 31 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 110833140 Common nudE ADP-ribose diphosphatase NudE ABO_0279 140 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 110835353 Common - acyltransferase, putative ABO_2492 30 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 110832900 Common - hypothetical protein ABO_0039 25 None None None 110834658 Common lysC aspartokinase ABO_1797 234 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 110835421 Nonpathogen - hypothetical protein ABO_2560 1 None None None 110833813 Common - hypothetical protein ABO_0952 27 COG0384 COG0384, Predicted epimerase, PhzC/PhzF homolog General function prediction only 110833696 Common fabA 3-hydroxydecanoyl-(acyl carrier protein) dehydratase ABO_0835 81 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 110834390 Common - CAIB/BAIF family protein ABO_1529 115 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 110835551 Common uvrD DNA helicase II ABO_2690 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 110835281 Common - ThiJ/PfpI family protein ABO_2420 110 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 110835054 Common vacB ribonuclease R ABO_2193 195 COG0557 VacB, Exoribonuclease R Transcription 110834831 Common tonB2 ferric siderophore transport system,periplasmicbinding prot ABO_1970 30 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 110834761 Common coxB cytochrome c oxidase, subunit II ABO_1900 141 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 110835221 Common pcoB copper resistance protein B precursor ABO_2360 43 COG3667 PcoB, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 110834363 Common - hypothetical protein ABO_1502 31 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 110834760 Common coxA cytochrome c oxidase, subunit I ABO_1899 173 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 110834266 Common - transcriptional regulator, MerR family ABO_1405 144 COG0789 SoxR, Predicted transcriptional regulators Transcription 110835138 Common - hypothetical protein ABO_2277 68 COG2861 COG2861, Uncharacterized protein conserved in bacteria Function unknown 110835460 Common - oxygenase ABO_2599 123 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 110834460 Common metG Methionyl-tRNA synthetase ABO_1599 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110833423 Common - histidinol dehydrogenase ABO_0562 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 110834062 Common acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase ABO_1201 219 COG1049 AcnB, Aconitase B Energy production and conversion 110834181 Common gspM General secretion pathway protein M ABO_1320 12 COG3149 PulM, Type II secretory pathway, component PulM Intracellular trafficking and secretion 110832921 Nonpathogen - hypothetical protein ABO_0060 3 None None None 110833951 Common - hypothetical protein ABO_1090 53 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110833521 Common - oxidoreductase ABO_0660 115 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 110835384 Common - probable RND efflux membrane fusion protein precursor ABO_2523 161 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110835478 Common metK S-adenosylmethionine synthetase ABO_2617 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 110833181 Common - conserved hypothetical protein TIGR00253 ABO_0320 89 COG1534 COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein Translation, ribosomal structure and biogenesis 110833888 Common - hypothetical protein ABO_1027 7 None None None 110833968 Common - hypothetical protein ABO_1107 82 COG2307 COG2307, Uncharacterized protein conserved in bacteria Function unknown 110834092 Common adhA alcohol dehydrogenase, putative ABO_1231 166 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 110833799 Common galE UDP-galactose 4-epimerase ABO_0938 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 110833083 Common - hypothetical protein ABO_0222 48 COG4965 TadB, Flp pilus assembly protein TadB Intracellular trafficking and secretion 110833430 Common - hypothetical protein ABO_0569 91 COG2945 COG2945, Predicted hydrolase of the alpha/beta superfamily General function prediction only 110834029 Common - hypothetical protein ABO_1168 83 COG0585 COG0585, Uncharacterized conserved protein Function unknown 110834563 Common - Acyl-CoA dehydrogenase, middle domain ABO_1702 148 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110835572 Common - hypothetical protein ABO_2711 6 None None None 110834874 Common - TIM-barrel protein, putative, NifR3 family, putative ABO_2013 219 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 110834572 Common - hypothetical protein ABO_1711 3 COG3212 COG3212, Predicted membrane protein Function unknown 110834230 Common lspA signal peptidase II ABO_1369 196 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110834731 Common - metal-sulfur cluster biosynthetic enzyme, putative ABO_1870 131 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 110833459 Common murG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentap eptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase ABO_0598 208 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 110834692 Common rmuC hypothetical protein ABO_1831 167 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 110834514 Common fadA 3-ketoacyl-CoA thiolase ABO_1653 180 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 110835084 Common acdA acyl-CoA dehydrogenase ABO_2223 148 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110832913 Common - hypothetical protein ABO_0052 26 None None None 110833645 Common - periplasmic binding domain/transglycosylase SLTdomain fusion ABO_0784 142 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 110834303 Nonpathogen - hypothetical protein ABO_1442 1 None None None 110833623 Common - exsB protein, putative ABO_0762 178 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 110834437 Common - hypothetical protein ABO_1576 13 None None None 110835378 Common - two-component sensor protein ABO_2517 216 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110833695 Common fabB 3-oxoacyl-[acyl-carrier-protein] synthase ABO_0834 209 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110833637 Common dapA dihydrodipicolinate synthase ABO_0776 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 110835400 Common - Cytochrome c5, putative ABO_2539 45 COG3245 CycB, Cytochrome c5 Energy production and conversion 110833679 Common - hypothetical protein ABO_0818 29 COG2259 COG2259, Predicted membrane protein Function unknown 110835031 Common nusB transcriptional terminator nusB ABO_2170 192 COG0781 NusB, Transcription termination factor Transcription 110834438 Common dcd deoxycytidine triphosphate deaminase ABO_1577 151 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 110835303 Common serB phosphoserine phosphatase ABO_2442 164 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 110834410 Common - hypothetical protein ABO_1549 4 None None None 110834890 Common - hypothetical protein ABO_2029 30 COG3310 COG3310, Uncharacterized protein conserved in bacteria Function unknown 110832869 Common glyS glycyl-tRNA synthetase ABO_0008 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 110834180 Common gspL General secretion pathway protein L ABO_1319 12 COG3297 PulL, Type II secretory pathway, component PulL Intracellular trafficking and secretion 110835459 Common - oxygenase ABO_2598 128 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 110834008 Common uppS undecaprenyl diphosphate synthase ABO_1147 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 110833543 Common - hypothetical protein ABO_0682 66 COG3176 COG3176, Putative hemolysin General function prediction only 110834404 Common rbn-1 Ribonuclease BN-like family protein ABO_1543 136 COG1295 Rbn, Predicted membrane protein Function unknown 110833138 Common hslR heat shock protein 15 kDa ABO_0277 103 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 110833079 Common - hypothetical protein ABO_0218 32 COG3745 CpaB, Flp pilus assembly protein CpaB Intracellular trafficking and secretion 110833872 Common uspA universal stress protein family ABO_1011 140 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 110834116 Common modB molybdate ABC transporter permease protein ABO_1255 183 COG4149 ModC, ABC-type molybdate transport system, permease component Inorganic ion transport and metabolism 110832875 Common - transcriptional regulator, MarR family ABO_0014 78 COG1846 MarR, Transcriptional regulators Transcription 110835107 Common ubiE methyltransferase, ubiquinone biosynthesis ABO_2246 209 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110833125 Common - S1 RNA binding domain protein ABO_0264 156 COG2183 Tex, Transcriptional accessory protein Transcription 110835013 Common ectC L-ectoine synthase ABO_2152 35 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 110834419 Common - hypothetical protein ABO_1558 15 None None None 110834611 Common serC phosphoserine aminotransferase ABO_1750 109 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 110832949 Common phaD transcriptional regulator, TetR family ABO_0088 44 COG1309 AcrR, Transcriptional regulator Transcription 110833063 Common alkJ2 alcohol degydrogenase ABO_0202 95 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 110833132 Common - potassium uptake protein TrkA ABO_0271 115 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 110832885 Nonpathogen - hypothetical protein ABO_0024 1 COG5487 COG5487, Small integral membrane protein Function unknown 110834374 Common yjbN tRNA-dihydrouridine synthase A ABO_1513 209 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 110835615 Common rnpA ribonuclease P, protein component ABO_2754 21 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 110835006 Common - hypothetical protein ABO_2145 19 None None None 110833496 Common - reverse transcriptase/maturase homolog ABO_0635 89 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 110833990 Common - hypothetical protein ABO_1129 33 COG0824 FcbC, Predicted thioesterase General function prediction only 110833504 Common prfC peptide chain release factor 3 ABO_0643 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 110834709 Common - ABC transporter, ATP-binding protein/permease, putative ABO_1848 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 110835211 Common - hypothetical protein ABO_2350 78 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 110835277 Common - hypothetical protein ABO_2416 37 COG4628 COG4628, Uncharacterized conserved protein Function unknown 110833348 Common - hypothetical protein ABO_0487 5 COG2365 COG2365, Protein tyrosine/serine phosphatase Signal transduction mechanisms 110833258 Common rplC 50S ribosomal protein L3 ABO_0397 238 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 110834782 Common - rhodanese domain protein ABO_1921 97 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 110834052 Common - hypothetical protein ABO_1191 131 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 110833418 Common kpsF KpsF/GutQ family protein ABO_0557 162 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 110834144 Common - cold-shock domain family protein ABO_1283 177 COG1278 CspC, Cold shock proteins Transcription 110833291 Common ssb single-stranded DNA-binding protein ABO_0430 213 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 110835041 Common - hypothetical protein ABO_2180 2 None None None 110833731 Common ccmA Heme exporter protein A ABO_0870 249 COG4133 CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component Posttranslational modification, protein turnover, chaperones 110834278 Common - hypothetical protein ABO_1417 31 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 110833883 Common - hemolysin, putative ABO_1022 217 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 110833897 Common nqrE Na(+)-translocating NADH-quinone reductase subunit E ABO_1036 76 COG2209 NqrE, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE Energy production and conversion 110834069 Common hmd 5, 10-methylenetetrahydromethanopterin cyclohydrolase ABO_1208 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 110834076 Common fabI Enoyl-[Acyl-carrier-protein] reductase ABO_1215 233 COG0623 FabI, Enoyl- acyl-carrier-protein 110835515 Common mnhF Multisubunit Na+/H+ antiporter, MnhF subunit ABO_2654 77 COG2212 MnhF, Multisubunit Na+/H+ antiporter, MnhF subunit Inorganic ion transport and metabolism 110833004 Common - hypothetical protein ABO_0143 25 COG3687 COG3687, Predicted metal-dependent hydrolase General function prediction only 110833213 Common - hypothetical protein ABO_0352 7 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 110833275 Common rpsE 30S ribosomal protein S5 ABO_0414 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 110833450 Common - hypothetical protein ABO_0589 134 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 110833938 Common tatD deoxyribonuclease, TatD family ABO_1077 237 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 110835190 Common nhaC Na+/H+ antiporter, putative ABO_2329 60 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 110835499 Common GSHPx glutathione peroxidase ABO_2638 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 110835535 Common - hypothetical protein ABO_2674 52 COG4681 COG4681, Uncharacterized protein conserved in bacteria Function unknown 110833665 Common dsbC protein disulfide-isomerase ABO_0804 66 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 110834855 Common ppa inorganic diphosphatase ABO_1994 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 110834164 Common cstA carbon starvation protein CstA ABO_1303 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 110834554 Common - hypothetical protein ABO_1693 25 COG3656 COG3656, Predicted periplasmic protein Function unknown 110834597 Common - hypothetical protein ABO_1736 75 COG3000 ERG3, Sterol desaturase Lipid metabolism 110835126 Common - hypothetical protein ABO_2265 97 COG3083 COG3083, Predicted hydrolase of alkaline phosphatase superfamily General function prediction only 110834801 Common - apolipoprotein N-acyltransferase ABO_1940 163 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 110834968 Common - monooxygenase, putative ABO_2107 85 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 110833900 Common - hypothetical protein ABO_1039 19 COG2991 COG2991, Uncharacterized protein conserved in bacteria Function unknown 110834812 Common proA gamma-glutamyl phosphate reductase ABO_1951 197 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 110834375 Common talB transaldolase B ABO_1514 171 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 110833323 Common lytB LytB protein ABO_0462 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 110835263 Common - transcriptional regulator, LysR family ABO_2402 147 COG0583 LysR, Transcriptional regulator Transcription 110834489 Common pdxJ pyridoxal phosphate biosynthetic protein PdxJ ABO_1628 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 110833354 Nonpathogen - hypothetical protein ABO_0493 1 None None None 110834165 Common gacA DNA-binding response regulator GacA ABO_1304 213 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 110834134 Common purB adenylosuccinate lyase ABO_1273 233 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 110835586 Common atpC ATP synthase, epsilon subunit ABO_2725 189 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 110834264 Common - multidrug resistance transporter, Bcr/CflA family, putative ABO_1403 151 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 110833663 Common - hypothetical protein ABO_0802 41 COG2261 COG2261, Predicted membrane protein Function unknown 110832874 Common - hypothetical protein ABO_0013 32 COG1160 COG1160, Predicted GTPases General function prediction only 110835466 Common ilvA threonine dehydratase, biosynthetic ABO_2605 218 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 110833155 Common hemH ferrochelatase ABO_0294 170 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 110835026 Common ggpS geranylgeranyl pyrophosphate synthetase ABO_2165 239 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 110834990 Nonpathogen - hypothetical protein ABO_2129 1 None None None 110835363 Common - FAD-binding oxidoreductase ABO_2502 7 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 110835510 Common dsbA thiol:disulfide interchange protein, DsbA family ABO_2649 69 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 110833115 Common - hypothetical protein ABO_0255 7 COG5589 COG5589, Uncharacterized conserved protein Function unknown 110834246 Common - ATPase, AAA family protein, putative ABO_1385 105 COG0714 COG0714, MoxR-like ATPases General function prediction only 110835154 Nonpathogen - hypothetical protein ABO_2293 2 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 110833722 Common metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase ABO_0861 141 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 110834945 Common - hypothetical protein ABO_2084 213 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 110835250 Nonpathogen - hypothetical protein ABO_2389 5 COG3110 COG3110, Uncharacterized protein conserved in bacteria Function unknown 110834987 Common cysI sulfite reductase (NADPH) ABO_2126 40 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 110833999 Common dapD tetrahydrodipicolinate N-succinyltransferase ABO_1138 35 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 110834155 Common serS seryl-tRNA synthetase ABO_1294 244 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 110834503 Nonpathogen - hypothetical protein ABO_1642 1 None None None 110833481 Common ampD N-acetyl-anhydromuranmyl-L-alanine amidase ABO_0620 108 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 110833101 Common - hypothetical protein ABO_0240 50 COG3488 COG3488, Predicted thiol oxidoreductase Energy production and conversion 110834041 Common htpX heat shock protein HtpX ABO_1180 189 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 110835175 Common - hypothetical protein ABO_2314 25 COG3686 COG3686, Predicted membrane protein Function unknown 110835338 Common czcD2 cation efflux system protein ABO_2477 173 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 110834877 Common purD phosphoribosylamine-glycine ligase ABO_2016 231 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 110833406 Common narH Respiratory nitrate reductase 1 beta chain ABO_0545 150 COG1140 NarY, Nitrate reductase beta subunit Energy production and conversion 110833944 Common - hypothetical protein ABO_1083 44 COG3816 COG3816, Uncharacterized protein conserved in bacteria Function unknown 110833989 Common - hypothetical protein ABO_1128 188 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 110833516 Common - hypothetical protein ABO_0655 97 COG1262 COG1262, Uncharacterized conserved protein Function unknown 110835434 Common - hypothetical protein ABO_2573 177 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 110833628 Common - amine-oxidase, putative ABO_0767 72 COG2907 COG2907, Predicted NAD/FAD-binding protein General function prediction only 110835530 Common - hypothetical protein ABO_2669 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 110833882 Common deoD nucleoside phosphorylase, putative ABO_1021 136 COG0005 Pnp, Purine nucleoside phosphorylase Nucleotide transport and metabolism 110833810 Common ligA NAD-dependent DNA ligase LigA ABO_0949 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 110833969 Common - transglutaminase-like superfamily domain protein ABO_1108 89 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 110835429 Common ftsX Cell division protein FtsX ABO_2568 92 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 110832929 Common serA D-3-phosphoglycerate dehydrogenase ABO_0068 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 110835598 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA ABO_2737 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 110833025 Common pabA chorismate lyase, putative ABO_0164 45 COG3161 UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) Coenzyme metabolism 110834339 Common gltP sodium:dicarboxylate symporter family protein ABO_1478 164 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 110833602 Common - hypothetical protein ABO_0741 109 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 110835419 Common - hypothetical protein ABO_2558 6 None None None 110832947 Common - hypothetical protein ABO_0086 5 None None None 110833346 Common ilvC ketol-acid reductoisomerase ABO_0485 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 110833819 Common - hypothetical protein ABO_0958 61 COG3173 COG3173, Predicted aminoglycoside phosphotransferase General function prediction only 110835146 Common mutY A/G specific adenine glycosylase ABO_2285 226 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 110834927 Nonpathogen - hypothetical protein ABO_2066 1 None None None 110832932 Common - hypothetical protein ABO_0071 35 COG3417 FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) General function prediction only 110833316 Common proB gamma-glutamyl kinase ABO_0455 190 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 110834455 Common - hypothetical protein ABO_1594 106 COG1533 SplB, DNA repair photolyase DNA replication, recombination, and repair 110834040 Common - hypothetical protein ABO_1179 26 COG3199 COG3199, Uncharacterized conserved protein Function unknown 110833804 Common - hypothetical protein ABO_0943 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 110833177 Common dapB dihydrodipicolinate reductase ABO_0316 216 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 110833930 Common fabG 3-oxoacyl-(acyl-carrier-protein) reductase ABO_1069 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110834312 Common - transglutaminase-like superfamily domain protein ABO_1451 93 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 110835227 Common cobO cob(I)yrinic acid a,c-diamide adenosyltransferase ABO_2366 141 COG2109 BtuR, ATP:corrinoid adenosyltransferase Coenzyme metabolism 110832898 Common - putative cytochrome ABO_0037 92 COG3038 CybB, Cytochrome B561 Energy production and conversion 110833614 Common ruvB Holliday junction DNA helicase B ABO_0753 217 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 110832990 Common rsmB tRNA and rRNA cytosine-C5-methylase, putative ABO_0129 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 110834604 Nonpathogen - hypothetical protein ABO_1743 1 None None None 110833907 Common - carbon-nitrogen hydrolase family protein ABO_1046 201 COG0388 COG0388, Predicted amidohydrolase General function prediction only 110833526 Common - probable transctiptional regulator ABO_0665 71 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110835056 Common - hypothetical protein ABO_2195 7 None None None 110833228 Common fadD long-fatty-acid-CoA ligase ABO_0367 215 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 110834316 Common purF amidophosphoribosyltransferase ABO_1455 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 110833312 Common - transferases ABO_0451 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 110834340 Common - oxidoreductase, short chain dehydrogenase/reductase family ABO_1479 10 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110833325 Common - hypothetical protein ABO_0464 28 COG4967 PilV, Tfp pilus assembly protein PilV Cell motility and secretion / Intracellular trafficking and secretion 110833392 Common mreC rod shape determining protein MreC ABO_0531 147 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 110833462 Common ftsQ cell division protein FtsQ ABO_0601 78 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 110833659 Common rpsP 30S ribosomal protein S16. ABO_0798 210 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 110833384 Common prfA peptide chain release factor 1 ABO_0523 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 110835412 Common - hypothetical protein ABO_2551 24 None None None 110835345 Common - hypothetical protein ABO_2484 15 COG1988 COG1988, Predicted membrane-bound metal-dependent hydrolases General function prediction only 110833757 Common - hypothetical protein ABO_0896 23 COG4267 COG4267, Predicted membrane protein Function unknown 110833245 Common algD GDP-mannose 6-dehydrogenase ABO_0384 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 110835143 Nonpathogen - hypothetical protein ABO_2282 1 None None None 110834088 Common - hypothetical protein ABO_1227 17 None None None 110834884 Common crp cAMP-regulatory protein ABO_2023 162 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110833642 Nonpathogen - hypothetical protein ABO_0781 3 None None None 110833701 Common adk adenylate kinase ABO_0840 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 110833791 Common apsK adenylylsulfate kinase ABO_0930 145 COG0529 CysC, Adenylylsulfate kinase and related kinases Inorganic ion transport and metabolism 110834587 Common - hypothetical protein ABO_1726 5 None None None 110833191 Common rbfA ribosome-binding factor A ABO_0330 146 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 110834871 Common accC acetyl-CoA carboxylase, biotin carboxylase ABO_2010 230 COG0439 AccC, Biotin carboxylase Lipid metabolism 110835231 Common - Fe3+-hydroxamate ABC transporter periplasmic binding protein ABO_2370 142 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 110835287 Common - metallo-beta-lactamase family protein ABO_2426 55 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 110834081 Common - oligopeptide ABC transporter, periplasmic peptide-binding pr ABO_1220 157 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 110834863 Common apbE thiamine biosynthesis lipoprotein, putative ABO_2002 130 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 110833072 Common pgm Phosphoglucomutase/phosphomannomutase ABO_0211 238 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 110833069 Common - hypothetical protein ABO_0208 5 None None None 110834211 Common ccoO-1 cytochrome c oxidase, cbb3-type, subunit II ABO_1350 82 COG2993 CcoO, Cbb3-type cytochrome oxidase, cytochrome c subunit Energy production and conversion 110834839 Common fmdA formamidase ABO_1978 64 COG2421 COG2421, Predicted acetamidase/formamidase Energy production and conversion 110834548 Nonpathogen - hypothetical protein with signal peptide ABO_1687 11 None None None 110834771 Nonpathogen - hypothetical protein ABO_1910 1 None None None 110835604 Common - hypothetical protein ABO_2743 53 COG0676 COG0676, Uncharacterized enzymes related to aldose 1-epimerase Carbohydrate transport and metabolism 110834981 Common - Transcriptional regulator, putative ABO_2120 146 COG1959 COG1959, Predicted transcriptional regulator Transcription 110833580 Common argD acetylornithine aminotransferase ABO_0719 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 110834285 Common - glutamate synthase, large subunit, putative ABO_1424 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 110833056 Common estB lipase/esterase ABO_0195 124 COG0657 Aes, Esterase/lipase Lipid metabolism 110835546 Common pstS phosphate ABC transporter periplasmic binding protein ABO_2685 127 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 110834845 Common - branched-chain amino acid ABC transporter,permease protein ABO_1984 163 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 110835244 Common moaB-1 molybdenum cofactor biosynthesis protein B ABO_2383 184 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 110833246 Common alg8 Alginate biosynthesis protein Alg8 ABO_0385 5 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110833919 Common pt protein tyrosine phosphatase ABO_1058 133 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 110835379 Common - transcription regulator, putative ABO_2518 175 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 110833269 Common rplX 50S ribosomal protein L24 ABO_0408 208 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 110835492 Common mtdA Multidrug transporter mdtA ABO_2631 140 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110834988 Nonpathogen - DsrE/DsrF family oxidoreductase family protein ABO_2127 1 None None None 110833040 Common - hypothetical protein ABO_0179 51 COG3608 COG3608, Predicted deacylase General function prediction only 110833239 Common rpoB DNA-directed RNA polymerase subunit beta ABO_0378 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 110835169 Common - hypothetical protein ABO_2308 36 COG4928 COG4928, Predicted P-loop ATPase General function prediction only 110835314 Common fadE acyl-CoA dehydrogenase ABO_2453 153 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110834978 Common - alginate biosynthesis transcriptional activator ABO_2117 8 None None None 110834651 Nonpathogen - hypothetical protein ABO_1790 1 None None None 110833775 Common rmlC dTDP-4-dehydrorhamnose 3,5-epimerase ABO_0914 165 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 110834623 Common - hypothetical protein ABO_1762 77 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 110833017 Common znuC zinc transport protein, ATPase ABO_0156 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 110835407 Common - Fatty acid desaturase, putative ABO_2546 26 COG3239 DesA, Fatty acid desaturase Lipid metabolism 110833041 Common ilvD-1 dihydroxy-acid dehydratase ABO_0180 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 110833020 Common - hypothetical protein ABO_0159 180 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 110833825 Common AcrB/AcrD/AcrFa AcrB/AcrD/AcrFa family protein ABO_0964 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 110834200 Common - hypothetical protein ABO_1339 15 None None None 110834753 Common uahA urea carboxylase/allophanate hydrolase ABO_1892 236 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 110833366 Common - hypothetical protein ABO_0505 12 COG3184 COG3184, Uncharacterized protein conserved in bacteria Function unknown 110834102 Common - transcriptional regulator, putative ABO_1241 103 COG0789 SoxR, Predicted transcriptional regulators Transcription 110833298 Common - hypothetical protein ABO_0437 15 COG4696 COG4696, Uncharacterized protein conserved in bacteria Function unknown 110834971 Nonpathogen - hypothetical protein ABO_2110 6 COG3584 COG3584, Uncharacterized protein conserved in bacteria Function unknown 110834906 Common - hypothetical protein ABO_2045 111 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 110834935 Common - ParA family protein ABO_2074 207 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 110835450 Nonpathogen - hypothetical protein ABO_2589 1 None None None 110835201 Common - hypothetical protein ABO_2340 5 None None None 110835554 Common - hypothetical protein ABO_2693 24 COG3687 COG3687, Predicted metal-dependent hydrolase General function prediction only 110833682 Common - cytidine/deoxycytidylate deaminase family protein ABO_0821 201 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 110833850 Common accD Acetyl-CoA carboxylase ABO_0989 159 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 110834836 Common lip lipase ABO_1975 22 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 110835503 Common - hypothetical protein ABO_2642 28 COG2229 COG2229, Predicted GTPase General function prediction only 110834996 Common cysS cysteinyl-tRNA synthetase ABO_2135 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110834661 Common recX regulatory protein recx ABO_1800 70 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 110835327 Common - FAD-dependent oxidoreductase protein ABO_2466 30 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 110833364 Common secD Preprotein translocase SecD subunit ABO_0503 217 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 110834486 Common - hypothetical protein ABO_1625 30 COG3298 COG3298, Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA replication, recombination, and repair 110833055 Common - monooxygenase ABO_0194 64 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 110833266 Common rpmC 50S ribosomal protein L29 ABO_0405 56 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 110835472 Common - hypothetical protein ABO_2611 17 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 110833776 Common wzx polysaccharide export protein, translocase ABO_0915 28 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 110833674 Common spoU RNA methyltransferase, TrmH family, group 3 ABO_0813 200 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 110834089 Common - NADH pyrophosphatase, putative ABO_1228 121 COG2816 NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding DNA replication, recombination, and repair 110835445 Common hyuA N-methylhydantoinase A ABO_2584 116 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110833654 Common - hypothetical protein ABO_0793 23 COG3313 COG3313, Predicted Fe-S protein General function prediction only 110834718 Common - hypothetical protein ABO_1857 121 COG1520 COG1520, FOG: WD40-like repeat Function unknown 110833018 Common znuB zinc ABC transporter permease protein ABO_0157 159 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 110833281 Common rpsK 30S ribosomal protein S11 ABO_0420 248 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 110833622 Common - radical activating enzyme ABO_0761 167 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 110833464 Common ftsZ Cell division protein FtsZ. ABO_0603 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 110834279 Common phaC2 Polyhydroxyalkanoate synthase ABO_1418 66 COG3243 PhaC, Poly(3-hydroxyalkanoate) synthetase Lipid metabolism 110833761 Common - penicillin-binding protein 1C, putative ABO_0900 199 COG4953 PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC Cell envelope biogenesis, outer membrane 110834644 Common - glycosyl transferase, putative ABO_1783 38 COG1819 COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase Carbohydrate transport and metabolism / Signal transduction mechanisms 110834205 Nonpathogen ccoS cytochrome oxidase maturation protein, cbb3-type ABO_1344 1 COG3197 FixS, Uncharacterized protein, possibly involved in nitrogen fixation Inorganic ion transport and metabolism 110834516 Nonpathogen - hypothetical protein ABO_1655 6 None None None 110834891 Common - hypothetical protein ABO_2030 14 None None None 110834418 Nonpathogen - hypothetical protein ABO_1557 1 None None None 110835229 Common - Probable ATP-binding ABC transporter protein ABO_2368 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 110833743 Common - hypothetical protein ABO_0882 2 None None None 110833183 Common ftsH cell division protein FtsH ABO_0322 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 110833476 Common - Pilin protein family, putative ABO_0615 42 COG4969 PilA, Tfp pilus assembly protein, major pilin PilA Cell motility and secretion / Intracellular trafficking and secretion 110835136 Common - hypothetical protein ABO_2275 156 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 110833689 Common - hypothetical protein ABO_0828 138 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 110834119 Nonpathogen - hypothetical protein ABO_1258 1 None None None 110834662 Common recA recA protein ABO_1801 221 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 110834835 Common mlp UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m eso-diamino ABO_1974 209 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 110833073 Common dut deoxyuridine 5-triphosphate nucleotidohydrolase ABO_0212 179 COG0756 Dut, dUTPase Nucleotide transport and metabolism 110833851 Common - oxidoreductase ABO_0990 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110833353 Common valS valyl-tRNA synthetase ABO_0492 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110834043 Common - hypothetical protein ABO_1182 5 None None None 110835311 Nonpathogen - hypothetical protein ABO_2451 1 None None None 110834352 Nonpathogen - hypothetical protein ABO_1491 1 None None None 110834773 Common - cold-shock domain family protein ABO_1912 166 COG1278 CspC, Cold shock proteins Transcription 110833209 Common - predicted kinase ABO_0348 50 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 110833435 Common - hypothetical protein ABO_0574 13 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 110833582 Common fecA FecA-like outer membrane receptor ABO_0721 91 COG4772 FecA, Outer membrane receptor for Fe3+-dicitrate Inorganic ion transport and metabolism 110834678 Common - L-lysine 2,3-aminomutase, putative ABO_1817 127 COG1509 KamA, Lysine 2,3-aminomutase Amino acid transport and metabolism 110833863 Common - hypothetical protein ABO_1002 44 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 110833912 Common - hypothetical protein ABO_1051 47 COG3216 COG3216, Uncharacterized protein conserved in bacteria Function unknown 110832884 Common - hypothetical protein ABO_0023 34 COG5285 COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin Secondary metabolites biosynthesis, transport, and catabolism 110835094 Common pilQ Fimbrial assembly protein pilQ precursor ABO_2233 139 COG4796 HofQ, Type II secretory pathway, component HofQ Intracellular trafficking and secretion 110834697 Common ihfA integration host factor subunit alpha ABO_1836 204 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 110834806 Common sulP Sulfate transporter 1.1 ABO_1945 157 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 110833830 Common - hypothetical protein ABO_0969 32 COG3788 COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily General function prediction only 110834905 Common - hypothetical protein ABO_2044 91 COG3178 COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases General function prediction only 110834939 Common - penicillin-binding protein, putative ABO_2078 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 110835502 Nonpathogen - outermembrane hypothetical protein ABO_2641 1 None None None 110834391 Common msrA methionine sulfoxide peptide reductase ABO_1530 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 110834219 Common czcC2 heavy metal RND efflux outer membrane protein,CzcC family ABO_1358 65 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110835565 Common - hypothetical protein ABO_2704 61 COG2354 COG2354, Uncharacterized protein conserved in bacteria Function unknown 110835238 Common cobD cobalamin biosynthesis protein ABO_2377 152 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 110835247 Common - metallo-beta-lactamase family protein ABO_2386 217 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 110833257 Common rpsJ 30S ribosomal protein S10 ABO_0396 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 110833190 Common infB translation initiation factor IF-2 ABO_0329 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 110832959 Common - peptidyl-prolyl cis-trans isomerase ABO_0098 128 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 110835061 Common hflC Protease subunit HflC ABO_2200 128 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 110834173 Common gspE General secretion pathway protein E ABO_1312 215 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 110834283 Common - ParA family protein ABO_1422 213 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 110833398 Common - cyclic nucleotide-binding protein ABO_0537 118 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110833844 Common pcaF acetyl-CoA acetyltransferase ABO_0983 176 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 110834145 Common - hypothetical protein ABO_1284 119 COG2127 COG2127, Uncharacterized conserved protein Function unknown 110834082 Common - membrane-bound lytic murein transglycosylase D ABO_1221 135 COG1388 LytE, FOG: LysM repeat Cell envelope biogenesis, outer membrane 110833929 Common fabD malonyl CoA-acyl carrier protein transacylase ABO_1068 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 110834930 Nonpathogen - hypothetical protein ABO_2069 1 None None None 110832934 Common - hypothetical protein ABO_0073 60 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 110833410 Common - hypothetical protein ABO_0549 140 COG1660 COG1660, Predicted P-loop-containing kinase General function prediction only 110834914 Common - dehydrogenase/reductase ABO_2053 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110832897 Common pyrR transcriptional regulator PyrR ABO_0036 111 COG2065 PyrR, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase Nucleotide transport and metabolism 110834925 Common rci shufflon-specific DNA recombinase ABO_2064 158 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 110835382 Common - hypothetical protein ABO_2521 6 None None None 110834329 Nonpathogen - hypothetical protein ABO_1468 1 None None None 110835404 Common phoP DNA-binding heavy metal response regulator, putative ABO_2543 219 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110835372 Common - branched-chain amino acid ABC transporter, permease protein ABO_2511 149 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 110833524 Common - oxidoreductase ABO_0663 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110833319 Common ribF FAD pyrophosphorylase ABO_0458 210 COG0196 RibF, FAD synthase Coenzyme metabolism 110835547 Common gtrA TRAP-type transport system, small permease component ABO_2686 69 COG4665 FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component Secondary metabolites biosynthesis, transport, and catabolism 110834240 Common czcC1 cobalt/zinc/cadmium efflux RND transporter,outermembrane protein ABO_1379 55 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110833326 Common - hypothetical protein ABO_0465 14 COG4966 PilW, Tfp pilus assembly protein PilW Cell motility and secretion / Intracellular trafficking and secretion 110833721 Common nasS nitrate-binding protein NasS, putative ABO_0860 82 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 110834250 Common - hypothetical protein ABO_1389 142 COG1354 COG1354, Uncharacterized conserved protein Function unknown 110834331 Common leuC isopropylmalate isomerase large subunit ABO_1470 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 110833196 Common panD aspartate alpha-decarboxylase ABO_0335 130 COG0853 PanD, Aspartate 1-decarboxylase Coenzyme metabolism 110834941 Nonpathogen - hypothetical protein ABO_2080 3 None None None 110835200 Nonpathogen - hypothetical protein ABO_2339 1 None None None 110833541 Common ppc phosphoenolpyruvate carboxylase ABO_0680 120 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 110833048 Common - oxidoreductase, GMC family ABO_0187 93 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 110834177 Common gspI general secretion pathway protein GspO ABO_1316 24 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 110835520 Common polA DNA polymerase I ABO_2659 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 110834152 Common lolA outer membrane lipoprotein carrier protein ABO_1291 71 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 110833562 Common csuD type 1 pili usher protein CsuD ABO_0701 38 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 110834817 Common rodA rod-shape-determining protein RodA ABO_1956 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 110833548 Common - hypothetical protein ABO_0687 8 None None None 110833753 Common - hypothetical protein ABO_0892 10 None None None 110835049 Common rplI 50S ribosomal protein L9 ABO_2188 216 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 110833960 Common - transcriptional regulator, LysR family ABO_1099 191 COG0583 LysR, Transcriptional regulator Transcription 110833948 Common nirD nitrite reductase, small subunit ABO_1087 47 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 110834724 Common - conserved Fe-S-cluster redox protein, putative ABO_1863 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 110834439 Common mrp ATP-binding protein, Mrp/Nbp35 family ABO_1578 233 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 110834265 Common nhaP NhaP-type Na+/H+ and K+/H+ antiporters ABO_1404 112 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 110835122 Common - hypothetical protein ABO_2261 13 None None None 110833265 Common rplP 50S ribosomal protein L16 ABO_0404 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 110835417 Common eno enoyl-CoA hydratase/isomerase ABO_2556 171 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 110834473 Common rnfD Electron transport complex protein rnfD ABO_1612 76 COG4658 RnfD, Predicted NADH:ubiquinone oxidoreductase, subunit RnfD Energy production and conversion 110835614 Common yidC inner membrane protein, 60 kDa, putative ABO_2753 200 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 110835129 Common - hypothetical protein ABO_2268 30 COG4067 COG4067, Uncharacterized protein conserved in archaea Posttranslational modification, protein turnover, chaperones 110833936 Common holB DNA polymerase III subunit delta' ABO_1075 221 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 110835089 Common gltD glutamate synthase subunit beta ABO_2228 186 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 110834106 Common menG ribonuclease activity regulator protein RraA ABO_1245 94 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 110833109 Common - ABC export system, membrane fusion protein ABO_0248 172 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110834955 Common - MbtH-family protein ABO_2094 34 COG3251 COG3251, Uncharacterized protein conserved in bacteria Function unknown 110835113 Common tatC Sec-independent periplasmic protein translocator TatC ABO_2252 204 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 110833443 Common sspB stringent starvation protein B ABO_0582 64 COG2969 SspB, Stringent starvation protein B General function prediction only 110835584 Common glmS glucosamine 6-phosphate synthase ABO_2723 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 110833110 Common - ABC transporter, ATP-binding protein/permease, putative ABO_0249 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 110834468 Common - hypothetical protein ABO_1607 29 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 110832886 Common - pirin family protein ABO_0025 148 COG1741 COG1741, Pirin-related protein General function prediction only 110835128 Common - hypothetical protein ABO_2267 19 None None None 110834247 Common - conserved hypothetical protein TIGR00046 ABO_1386 85 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 110834372 Common - universal stress protein family ABO_1511 62 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 110832892 Common - hypothetical protein ABO_0032 157 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 110833202 Common hydG nitrogen regulation protein NR(I ABO_0341 201 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110835299 Common - transcriptional regulator, putative ABO_2438 158 COG1522 Lrp, Transcriptional regulators Transcription 110833154 Common - hypothetical protein ABO_0293 66 COG0824 FcbC, Predicted thioesterase General function prediction only 110834794 Common - Sco1/SenC family protein, putative ABO_1933 114 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 110835310 Common - hydrolase, alpha/beta fold family ABO_2449 103 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110832873 Nonpathogen - hypothetical protein ABO_0012 7 None None None 110834741 Common - hypothetical protein ABO_1880 48 COG3762 COG3762, Predicted membrane protein Function unknown 110833008 Common cobS Cobalamin 5'-phosphate synthase. ABO_0147 76 COG0368 CobS, Cobalamin-5-phosphate synthase Coenzyme metabolism 110833024 Common rubA rubredoxin ABO_0163 115 COG1773 COG1773, Rubredoxin Energy production and conversion 110835339 Common - hypothetical protein ABO_2478 66 COG1971 COG1971, Predicted membrane protein Function unknown 110835468 Nonpathogen - hypothetical protein ABO_2607 1 None None None 110835537 Common - hypothetical protein ABO_2676 2 None None None 110834073 Common - ATP-dependent protease La ABO_1212 206 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 110833114 Common fadA1 acetyl-CoA acyltransferase ABO_0253 187 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 110833100 Common - Uncharacterized iron-regulated protein ABO_0239 38 COG3487 IrpA, Uncharacterized iron-regulated protein Inorganic ion transport and metabolism 110833334 Common - hypothetical protein ABO_0473 4 None None None 110835027 Common dxs deoxyxylulose-5-phosphate synthase ABO_2166 227 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 110834840 Common - chaperone-associated ATPase, putative ABO_1979 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 110834397 Nonpathogen - hypothetical protein ABO_1536 1 None None None 110833730 Common blc outer membrane lipoprotein Blc, putative ABO_0869 74 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 110834857 Common - hypothetical protein ABO_1996 25 COG3687 COG3687, Predicted metal-dependent hydrolase General function prediction only 110835532 Common pilU type IV pili twitching motility protein PilT ABO_2671 204 COG5008 PilU, Tfp pilus assembly protein, ATPase PilU Cell motility and secretion / Intracellular trafficking and secretion 110833224 Common - hypothetical protein ABO_0363 101 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 110833292 Nonpathogen - hypothetical protein ABO_0431 1 None None None 110834495 Common lepA GTP-binding protein LepA ABO_1634 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 110834585 Common - phenazine biosynthesis-like protein, putative ABO_1724 120 COG0384 COG0384, Predicted epimerase, PhzC/PhzF homolog General function prediction only 110833884 Common cysK cysteine synthase A ABO_1023 219 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 110835354 Common parC DNA topoisomerase IV subunit A ABO_2493 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 110835162 Common ilvE branched-chain amino acid aminotransferase ABO_2301 217 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 110835559 Common - hypothetical protein ABO_2698 87 COG0824 FcbC, Predicted thioesterase General function prediction only 110833891 Common - hypothetical protein ABO_1030 57 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 110834309 Common rsmC ribosomal ribonucleate guanine-2-methyltransferase ABO_1448 97 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 110834969 Common - lipase/esterase ABO_2108 114 COG0657 Aes, Esterase/lipase Lipid metabolism 110834898 Common cyoA cytochrome o ubiquinol oxidase, subunit II ABO_2037 130 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 110834858 Common - hypothetical protein ABO_1997 19 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 110835151 Common rfaE bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase ABO_2290 159 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 110834577 Common - hypothetical protein ABO_1716 32 COG3239 DesA, Fatty acid desaturase Lipid metabolism 110833094 Common - hypothetical protein ABO_0233 9 COG2248 COG2248, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 110833493 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase ABO_0632 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110835496 Common - Transcriptional regulator, ArsR family, putative ABO_2635 168 COG0640 ArsR, Predicted transcriptional regulators Transcription 110833438 Common rpsI 30S ribosomal protein S9 ABO_0577 249 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 110833084 Common - hypothetical protein ABO_0223 49 COG2064 TadC, Flp pilus assembly protein TadC Cell motility and secretion / Intracellular trafficking and secretion 110833221 Common - hypothetical protein ABO_0360 19 None None None 110834159 Nonpathogen - hypothetical protein ABO_1298 1 None None None 110833272 Common rpsH 30S ribosomal protein S8 ABO_0411 238 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 110832992 Common def-1 peptide deformylase ABO_0131 214 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 110835290 Common - hypothetical protein ABO_2429 5 None None None 110834596 Common - hypothetical protein ABO_1735 7 None None None 110835514 Common mnhG putative monovalent cation/H+ antiporter subunit G ABO_2653 97 COG1320 MnhG, Multisubunit Na+/H+ antiporter, MnhG subunit Inorganic ion transport and metabolism 110834026 Common - hypothetical protein ABO_1165 61 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 110834163 Common - hypothetical protein ABO_1302 12 None None None 110834627 Common - hypothetical protein ABO_1766 75 COG2983 COG2983, Uncharacterized conserved protein Function unknown 110834389 Nonpathogen - hypothetical protein ABO_1528 1 None None None 110835240 Common - alpha-ribazole-5'-phosphate phosphatase, putative ABO_2379 144 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 110834189 Common - oxidoreductase ABO_1328 117 COG3288 PntA, NAD/NADP transhydrogenase alpha subunit Energy production and conversion 110833980 Common minD septum site-determining protein MinD ABO_1119 138 COG2894 MinD, Septum formation inhibitor-activating ATPase Cell division and chromosome partitioning 110833294 Common - general (type II) secretion pathway protein D ABO_0433 141 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 110834560 Common - Hypotetical protein ABO_1699 5 None None None 110835078 Common bioC probable biotin biosynthesis protein BioC ABO_2217 93 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110835069 Common - hypothetical protein ABO_2208 222 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 110835542 Common phoU phosphate transport system regulatory protein ABO_2681 187 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 110834772 Common - hypothetical protein ABO_1911 81 COG3146 COG3146, Uncharacterized protein conserved in bacteria Function unknown 110833739 Common - ABC transporter ATP-binding component ABO_0878 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 110835355 Common parE DNA topoisomerase IV subunit B ABO_2494 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 110835270 Common - hypothetical protein ABO_2409 36 COG4728 COG4728, Uncharacterized protein conserved in bacteria Function unknown 110834065 Common - UDP-2,3-diacylglucosamine hydrolase ABO_1204 77 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 110833484 Common aceF pyruvate dehydrogenase, E2 component ABO_0623 201 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 110834121 Common - hypothetical protein ABO_1260 8 None None None 110834702 Common infC Translation initiation factor IF-3 ABO_1841 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 110834876 Common purH phosphoribosylaminoimidazolecarboxamide formyltransferase ABO_2015 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 110834827 Common - hypothetical protein ABO_1966 14 None None None 110834009 Common cdsA phosphatidate cytidylyltransferase ABO_1148 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 110834057 Common - hypothetical protein ABO_1196 6 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 110834755 Common hepA ATP-dependent helicase HepA ABO_1894 114 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 110834036 Common - alcohol dehydrogenase, iron-containing, putative ABO_1175 173 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 110834263 Common - ABC transporter, permease protein, putative ABO_1402 86 COG3127 COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Secondary metabolites biosynthesis, transport, and catabolism 110832927 Common - fumarylacetoacetate hydrolase family protein ABO_0066 179 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 110834683 Common - hypothetical protein ABO_1822 28 None None None 110833917 Common lpxK tetraacyldisaccharide 4`-kinase ABO_1056 130 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 110834420 Nonpathogen - hypothetical protein ABO_1559 3 None None None 110834427 Common fadB fatty oxidation complex alpha subunit ABO_1566 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 110835000 Common - hypothetical protein ABO_2139 17 None None None 110834064 Common miaE tRNA-(ms(2)io(6)a)-hydroxylase ABO_1203 40 COG4445 MiaE, Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 110834570 Common - DNA-binding response regulator ABO_1709 211 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110833375 Common cysE serine acetyltransferase ABO_0514 191 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 110834348 Common sixA putative phosphohistidine phosphatase ABO_1487 45 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 110834885 Common trpC indole-3-glycerol phosphate synthase ABO_2024 219 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 110833501 Common - ribosomal-protein-alanine N-acetyltransferase ABO_0640 197 COG0456 RimI, Acetyltransferases General function prediction only 110835205 Common thyA thymidylate synthase ABO_2344 137 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 110833286 Nonpathogen - hypothetical protein ABO_0425 2 None None None 110834300 Common - hypothetical protein ABO_1439 10 COG5185 HEC1, Protein involved in chromosome segregation, interacts with SMC proteins Cell division and chromosome partitioning 110833811 Common - hypothetical protein ABO_0950 38 COG4764 COG4764, Uncharacterized protein conserved in bacteria Function unknown 110832965 Common chpA two-component hybrid chemotactic sensor and regulator, putative ABO_0104 222 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 110834734 Common rrf2 rrf2 family protein ABO_1873 152 COG1959 COG1959, Predicted transcriptional regulator Transcription 110835489 Common - hypothetical protein ABO_2628 198 COG0628 PerM, Predicted permease General function prediction only 110834689 Common - hypothetical protein ABO_1828 10 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 110833363 Common yajC preprotein translocase, YajC subunit ABO_0502 163 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 110835484 Common - MATE efflux family protein, putative ABO_2623 64 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 110834403 Common - hydrolase ABO_1542 131 COG1254 AcyP, Acylphosphatases Energy production and conversion 110834192 Common - hydrolase ABO_1331 15 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110833470 Common - hypothetical protein ABO_0609 109 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 110835553 Common - hypothetical protein ABO_2692 4 None None None 110834723 Common pilF type IV pili biogenesis protein PilF ABO_1862 107 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 110833683 Common oprF outer membrane protein OprF ABO_0822 167 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110833958 Common - monooxygenase, flavin-binding family ABO_1097 81 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 110834229 Common - Cation efflux system permease, putative ABO_1368 90 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 110835104 Common - hypothetical protein ABO_2243 30 COG3087 FtsN, Cell division protein Cell division and chromosome partitioning 110835507 Common - hypothetical protein ABO_2646 33 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 110833752 Common - hypothetical protein ABO_0891 14 None None None 110834239 Common czcB1 heavy metal RND efflux membrane fusion protein,CzcB family ABO_1378 109 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110833015 Common - hypothetical protein ABO_0154 2 None None None 110833405 Common narJ Respiratory nitrate reductase 1 delta chain ABO_0544 54 COG2180 NarJ, Nitrate reductase delta subunit Energy production and conversion 110835577 Common ureF urease accessory protein UreF ABO_2716 77 COG0830 UreF, Urease accessory protein UreF Posttranslational modification, protein turnover, chaperones 110835613 Common trmE tRNA modification GTPase ABO_2752 228 COG0486 ThdF, Predicted GTPase General function prediction only 110834479 Common - dienelactone hydrolase family protein ABO_1618 95 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 110834626 Common - hypothetical protein ABO_1765 2 None None None 110834960 Common gdhA glutamate dehydrogenase, fragment ABO_2099 84 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 110834228 Common - transcriptional regulator, MerR family ABO_1367 139 COG0789 SoxR, Predicted transcriptional regulators Transcription 110835346 Common - hypothetical protein ABO_2485 3 None None None 110833824 Common - hypothetical protein ABO_0963 127 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110835612 Common - alkylhydroperoxidase AhpD domain protein ABO_2751 55 COG2128 COG2128, Uncharacterized conserved protein Function unknown 110832864 Common recF DNA replication and repair protein RecF ABO_0003 84 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 110833676 Common - Trypsin-like serine protease ABO_0815 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 110833991 Common bacA bacitracin resistance protein BacA/undecaprenol kinase ABO_1130 200 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 110834781 Common rhlB ATP-dependent RNA helicase RhlB ABO_1920 237 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110834715 Common - hypothetical protein ABO_1854 8 COG2984 COG2984, ABC-type uncharacterized transport system, periplasmic component General function prediction only 110835322 Common - hypothetical protein ABO_2461 181 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 110833426 Common - serine endopeptidases ABO_0565 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 110833458 Common ftsW cell division protein FtsW ABO_0597 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 110834359 Common sdhA succinate dehydrogenase flavoprotein subunit ABO_1498 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 110833139 Common - hydrolase, haloacid dehalogenase-like family ABO_0278 39 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 110835015 Common degU transcriptional regulatory protein degu (protease production enhancer protein). ABO_2154 197 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 110834105 Common - hypothetical protein ABO_1244 47 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110833527 Common - hypothetical protein ABO_0666 82 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 110833456 Common murX/mraY Phospho-N-acetylmuramoyl-pentapeptide-transferas e ABO_0595 226 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 110834231 Common - transcriptional regulator, putative ABO_1370 56 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 110835335 Nonpathogen - hypothetical protein ABO_2474 1 None None None 110832894 Common dsbG thiol:disulfide interchange protein DsbG ABO_0033 25 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 110835017 Common - DNA polymerase III subunit epsilon ABO_2156 47 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 110835585 Common glmU Bifunctional glmU protein ABO_2724 238 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 110834994 Common thrS Threonyl-tRNA synthetase ABO_2133 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110834360 Common sdhD succinate dehydrogenase, hydrophobic membrane anchor protein ABO_1499 51 COG2142 SdhD, Succinate dehydrogenase, hydrophobic anchor subunit Energy production and conversion 110832972 Common tonB TonB ABO_0111 36 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 110833573 Common rstA DNA-binding response regulator ABO_0712 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110833856 Common yfjB nicotinamide adenine dinucleotide kinase ABO_0995 239 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 110833831 Common - D-amino acid oxidase family protein ABO_0970 56 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 110834387 Common - hypothetical protein ABO_1526 12 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 110833885 Common - hypothetical protein ABO_1024 135 COG2081 COG2081, Predicted flavoproteins General function prediction only 110834368 Common fhuA Ferrichrome-iron receptor precursor ABO_1507 121 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 110834452 Common - alpha/beta-hydrolase protein family, putative ABO_1591 37 COG3571 COG3571, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 110833714 Common nasD nitrate transporter ATPase component NasD ABO_0853 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 110833618 Common - hypothetical protein ABO_0757 19 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 110834621 Common - hypothetical protein ABO_1760 4 None None None 110833707 Common - hypothetical protein ABO_0846 12 None None None 110834206 Common - cation-transporting P-type ATPase ABO_1345 229 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 110834973 Common - dehydrogenase/reductase ABO_2112 233 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110833145 Nonpathogen - hypothetical protein ABO_0284 1 COG4988 CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 110835433 Common thiG thiazole synthase ABO_2572 166 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 110833782 Common - hypothetical protein ABO_0921 64 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110835081 Common bioB biotin synthase ABO_2220 175 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 110835079 Common bioH biotin biosynthesis protein bioH ABO_2218 172 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110835428 Common ftsE Cell division ATP-binding protein FtsE ABO_2567 249 COG2884 FtsE, Predicted ATPase involved in cell division Cell division and chromosome partitioning 110834430 Common - Smr domain protein ABO_1569 90 COG2840 COG2840, Uncharacterized protein conserved in bacteria Function unknown 110834547 Common cysH phosphoadenosine phosphosulfate reductase ABO_1686 154 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 110833858 Common - hypothetical protein ABO_0997 11 None None None 110834892 Common regR response regulator ABO_2031 184 COG4567 COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Signal transduction mechanisms / Transcription 110832905 Common - AhpC/TSA family protein ABO_0044 81 COG0678 AHP1, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110835181 Common hemX uroporphyrin-III C-methyltransferase, putative ABO_2320 52 COG2959 HemX, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 110834754 Nonpathogen - Hypotetical protein ABO_1893 2 None None None 110833166 Common smpB SsrA-binding protein ABO_0305 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 110832867 Common plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative ABO_0006 178 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 110834633 Common - acyl-CoA dehydrogenase ABO_1772 161 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110835088 Common hemE uroporphyrinogen decarboxylase ABO_2227 181 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 110834832 Common - putative membrane protein, possibly a metal ion transporter ABO_1971 12 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 110833047 Common fadE-2 Acyl-CoA dehydrogenase, putative ABO_0186 122 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110834942 Common tnpB transposase subunit B, putative ABO_2081 149 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 110834613 Common - N-ethylammeline chlorohydrolase ABO_1752 183 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 110835603 Common atfA1 acyltransferase ABO_2742 28 None None None 110835371 Common - branched-chain amino acid ABC transporter, permease protein ABO_2510 150 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 110832979 Common - transcriptional regulator, LysR family ABO_0118 135 COG0583 LysR, Transcriptional regulator Transcription 110832946 Common - GMC oxidoreductase family protein, putative ABO_0085 59 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 110834540 Common cobW CobW/P47K family protein, putative ABO_1679 128 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 110833345 Common - DNA-binding transcriptional regulator IlvY ABO_0484 184 COG0583 LysR, Transcriptional regulator Transcription 110834779 Common acdS short-chain dehydrogenase/reductase family ABO_1918 238 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 110834865 Common - hypothetical protein ABO_2004 6 None None None 110835009 Common dctQ TRAP-C4-dicarboxylate transport system, small permease ABO_2148 41 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 110832985 Common fimC type 1 pili chaperone protein FimC ABO_0124 26 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 110833759 Common - hypothetical protein ABO_0898 73 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 110833417 Common - phosphatase, YrbI family ABO_0556 104 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 110834328 Common leuB 3-isopropylmalate dehydrogenase ABO_1467 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 110834457 Common - hypothetical protein ABO_1596 12 COG5626 COG5626, Uncharacterized small conserved protein Function unknown 110835279 Common - transcriptional regulator, TetR-family ABO_2418 68 COG1309 AcrR, Transcriptional regulator Transcription 110833531 Common - oxidoreductase ABO_0670 165 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 110833617 Common tolR biopolymer transport protein TolR ABO_0756 134 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 110835393 Common - magnesium chelatase-related protein, putative ABO_2532 196 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 110834735 Nonpathogen - hypothetical protein ABO_1874 1 None None None 110833271 Common rpsN 30S ribosomal protein S14 ABO_0410 212 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 110833604 Common - DNA-binding response regulator ABO_0743 156 COG4567 COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Signal transduction mechanisms / Transcription 110835465 Common - 5-formyltetrahydrofolate cyclo-ligase family protein ABO_2604 178 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 110833641 Nonpathogen - hypothetical protein ABO_0780 1 None None None 110835368 Nonpathogen - hypothetical protein ABO_2507 1 None None None 110833176 Common dnaJ Heat shock protein DnaJ ABO_0315 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 110835592 Common atpE ATP synthase Fo, C subunit ABO_2731 29 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 110833475 Common pilB type IV fimbrial assembly protein PilB ABO_0614 213 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 110835525 Common - hypothetical protein ABO_2664 45 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 110833972 Common - tesB-like acyl-CoA thioesterase ABO_1111 16 COG1946 TesB, Acyl-CoA thioesterase Lipid metabolism 110834870 Common accB acetyl-CoA carboxylase, biotin carboxyl carrier protein ABO_2009 180 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 110834849 Nonpathogen - hypothetical protein ABO_1988 1 None None None 110834016 Common lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosa mine O-acyl ABO_1155 155 COG1043 LpxA, Acyl- acyl carrier protein 110834566 Common fadH 2,4-dienoyl-CoA reductase [NADPH] ABO_1705 208 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 110835040 Common rpoE rna polymerase sigma-e factor (sigma-24). ABO_2179 116 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110833559 Common - hypothetical protein ABO_0698 16 COG3868 COG3868, Uncharacterized conserved protein Function unknown 110833796 Common ugd2 NDP-sugar dehydrogenase like UDP-glucose dehydrogenase ABO_0935 196 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 110833950 Common narB nitrate reductase, large subunit ABO_1089 189 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 110835216 Common - hypothetical protein ABO_2355 15 COG4633 COG4633, Uncharacterized protein conserved in bacteria Function unknown 110833769 Common wbpO capsular polysaccharide biosynthesis protein/UDP-glucose dehydrogenase/GDP mannose family protein, putati ABO_0908 206 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 110833463 Common ftsA cell division protein FtsA ABO_0602 190 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 110835095 Common pilP type 4 fimbrial biogenesis protein PilP ABO_2234 37 COG3168 PilP, Tfp pilus assembly protein PilP Cell motility and secretion / Intracellular trafficking and secretion 110834886 Common trpD anthranilate phosphoribosyltransferase ABO_2025 217 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 110833010 Nonpathogen - hypothetical protein ABO_0149 5 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 110833385 Common hemK methyltransferase ABO_0524 212 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 110834805 Common - hypothetical protein ABO_1944 41 COG3453 COG3453, Uncharacterized protein conserved in bacteria Function unknown 110835410 Nonpathogen - hypothetical protein ABO_2549 1 None None None 110834218 Common czcB2 heavy metal RND efflux membrane fusion protein,CzcB family ABO_1357 163 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110835521 Nonpathogen - Hypotetical protein ABO_2660 1 None None None 110833585 Common rnt ribonuclease T ABO_0724 66 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 110833237 Common rplJ 50S ribosomal protein L10 ABO_0376 210 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 110835060 Nonpathogen - hypothetical protein ABO_2199 1 COG3242 COG3242, Uncharacterized protein conserved in bacteria Function unknown 110835264 Common gpmA phosphoglycerate mutase ABO_2403 27 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 110833124 Common gshA glutamate--cysteine ligase ABO_0263 58 COG2918 GshA, Gamma-glutamylcysteine synthetase Coenzyme metabolism 110834979 Common - GGDEF domain protein ABO_2118 177 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 110835232 Common - TonB-dependent receptor protein ABO_2371 129 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 110833201 Common pcnB poly(A) polymerase ABO_0340 213 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 110834172 Common - sensory box protein/response regulator ABO_1311 200 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 110833225 Common anmK anhydro-N-acetylmuramic acid kinase ABO_0364 120 COG2377 COG2377, Predicted molecular chaperone distantly related to HSP70-fold metalloproteases Posttranslational modification, protein turnover, chaperones 110834553 Common - hypothetical protein ABO_1692 29 COG3295 COG3295, Uncharacterized protein conserved in bacteria Function unknown 110834607 Common cmk cytidylate kinase ABO_1746 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 110835439 Common - Ham1 protein ABO_2578 237 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 110834924 Common rpoD RNA polymerase sigma factor RpoD ABO_2063 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 110833175 Common dnaK Heat shock protein DnaK ABO_0314 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 110833720 Common nasT Nitrogen assimilation response regulatory protein ABO_0859 112 COG3707 AmiR, Response regulator with putative antiterminator output domain Signal transduction mechanisms 110834915 Nonpathogen - hypothetical protein ABO_2054 1 None None None 110835405 Common - small multidrug resistance protein, putative ABO_2544 136 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 110835452 Common gcvP-1 glycine dehydrogenase subunit 2 ABO_2591 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 110834343 Common - MaoC domain protein, putative ABO_1482 69 COG2030 MaoC, Acyl dehydratase Lipid metabolism 110833766 Common wza outer membrane polysaccharide export protein precursor ABO_0905 125 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 110835246 Common - hypothetical protein ABO_2385 170 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 110833816 Common - oxidoreductase ABO_0955 76 COG2030 MaoC, Acyl dehydratase Lipid metabolism 110833407 Common narG Respiratory nitrate reductase ABO_0546 99 COG5013 NarG, Nitrate reductase alpha subunit Energy production and conversion 110834492 Common rnc ribonuclease III ABO_1631 215 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 110834993 Common - chemotaxis sensory transducer family protein ABO_2132 107 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 110833797 Common pgi glucose-6-phosphate isomerase ABO_0936 190 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 110835239 Common cobT nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase ABO_2378 118 COG2038 CobT, NaMN:DMB phosphoribosyltransferase Coenzyme metabolism 110834332 Common - transcriptional regulator, LysR family ABO_1471 193 COG0583 LysR, Transcriptional regulator Transcription 110833222 Common - hypothetical protein ABO_0361 38 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 110833318 Common - membrane protein, MviN family ABO_0457 189 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 110835367 Common - amidase ABO_2506 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 110834694 Common - lipoprotein, putative ABO_1833 4 None None None 110834176 Common gspH general secretion pathway protein H precursor ABO_1315 7 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 110834561 Common - esterified fatty acid cis/trans isomerase family protein ABO_1700 15 None None None 110834262 Common tesA acyl-CoA thioesterase I ABO_1400 101 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 110835609 Common alkK medium-chain-fatty-acid CoA ligase ABO_2748 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110833563 Common - hypothetical protein ABO_0702 19 COG5430 COG5430, Uncharacterized secreted protein Function unknown 110834515 Nonpathogen - hypothetical protein ABO_1654 4 None None None 110835105 Common hslV ATP-dependent protease peptidase subunit ABO_2244 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 110835373 Common - branched-chain amino acid ABC transporter, ATP-binding protein, putative ABO_2512 249 COG4674 COG4674, Uncharacterized ABC-type transport system, ATPase component General function prediction only 110834084 Common - hypothetical protein ABO_1223 63 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110834136 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ABO_1275 213 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 110833267 Common rpsQ 30S ribosomal protein S17 ABO_0406 228 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 110834169 Common cheR chemotaxis protein methyltransferase ABO_1308 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 110833273 Common rplF 50S ribosomal protein L6 ABO_0412 242 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 110834696 Common - transcriptional regulator, putative ABO_1835 100 COG0789 SoxR, Predicted transcriptional regulators Transcription 110833537 Common - hypothetical protein ABO_0676 112 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 110833193 Common rpsO 30S ribosomal protein S15 ABO_0332 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 110833054 Nonpathogen - hypothetical protein ABO_0193 3 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 110833208 Common sfsA sugar fermentation stimulation protein, putative ABO_0347 107 COG1489 SfsA, DNA-binding protein, stimulates sugar fermentation General function prediction only 110833549 Common dctP TRAP dicarboxylate transporter, putative ABO_0688 69 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 110834824 Common lipB lipoyl-[acyl-carrier protein]-protein-n-lipoyltransferase ABO_1963 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 110833988 Common yoaA Probable ATP-dependent helicase ABO_1127 149 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 110834710 Common - HlyD family secretion protein, putative ABO_1849 151 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 110834843 Common livG branched-chain amino acid ABC transporter, ATP-binding prote ABO_1982 249 COG4674 COG4674, Uncharacterized ABC-type transport system, ATPase component General function prediction only 110832935 Common - CBS domain protein ABO_0074 10 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 110834083 Common bla Metallo-beta-lactamase family protein ABO_1222 204 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 110834319 Common folC folylpolyglutamate synthase / dihydrofolate synthase ABO_1458 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 110834679 Common recC exodeoxyribonuclease V gamma chain ABO_1818 65 COG1330 RecC, Exonuclease V gamma subunit DNA replication, recombination, and repair 110835446 Common - fatty acid desaturase, putative ABO_2585 67 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 110834961 Common gdhA glutamate dehydrogenase ABO_2100 169 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 110833845 Common gcdH glutaryl-CoA dehydrogenase ABO_0984 162 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110833823 Common aldh1 aldehyde dehydrogenase family protein ABO_0962 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 110833393 Common mreD rod shape-determining protein MreD ABO_0532 34 COG2891 MreD, Cell shape-determining protein Cell envelope biogenesis, outer membrane 110833436 Common - oxidoreductase, aldo/keto reductase family ABO_0575 195 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 110833909 Common - hypothetical protein ABO_1048 7 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 110834663 Common - CinA domain protein ABO_1802 191 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 110834834 Common - hypothetical protein ABO_1973 19 COG3556 COG3556, Predicted membrane protein Function unknown 110833344 Common - hypothetical protein ABO_0483 6 None None None 110835145 Common - hypothetical protein ABO_2284 45 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 110835312 Common - transcriptional regulator, TetR family ABO_2450 18 COG1309 AcrR, Transcriptional regulator Transcription 110834462 Common - aldolase, putative ABO_1601 81 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 110833640 Common purC phosphoribosylaminoimidazole-succinocarboxamide synthase ABO_0779 203 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 110833244 Common tuf elongation factor Tu ABO_0383 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 110835253 Common - hypothetical protein ABO_2392 74 COG1683 COG1683, Uncharacterized conserved protein Function unknown 110833777 Nonpathogen - hypothetical protein ABO_0916 2 None None None 110834059 Common - hypothetical protein ABO_1198 107 COG2962 RarD, Predicted permeases General function prediction only 110834742 Common - hypothetical protein ABO_1881 86 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 110835191 Common - diamine N-acetyltransferase ABO_2330 67 COG0456 RimI, Acetyltransferases General function prediction only 110834774 Common - sodium solute transporter family protein ABO_1913 156 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 110833675 Common - hypothetical protein ABO_0814 28 COG3897 COG3897, Predicted methyltransferase General function prediction only 110834848 Common luxR DNA-binding response regulator, LuxR family ABO_1987 225 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 110834254 Common ispZ intracellular septation protein A ABO_1393 91 COG2917 COG2917, Intracellular septation protein A Cell division and chromosome partitioning 110833862 Common - BNR domain protein ABO_1001 37 COG4447 COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor General function prediction only 110834904 Common - nucleotidyltransferase family protein ABO_2043 216 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 110834856 Common - transcriptional regulator, AraC family ABO_1995 114 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110833910 Common - Lipoprotein releasing system, transmembrane protein, LolC/E family ABO_1049 165 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 110835222 Common yadF carbonic anhydrase ABO_2361 151 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 110833733 Common ccmC Heme exporter protein C ABO_0872 120 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 110833051 Common - monooxygenase, putative ABO_0190 61 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 110833362 Common tgt queuine tRNA-ribosyltransferase ABO_0501 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 110833232 Common tuf-1 elongation factor Tu ABO_0371 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 110834933 Common - hypothetical protein ABO_2072 36 COG3704 VirB6, Type IV secretory pathway, VirB6 components Intracellular trafficking and secretion 110834899 Common - metabolite transport transmembrane protein, putative ABO_2038 117 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 110833444 Common - lipoprotein, putative ABO_0583 63 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 110833293 Common - hypothetical protein ABO_0432 27 COG3031 PulC, Type II secretory pathway, component PulC Intracellular trafficking and secretion 110833949 Common - nitrite reductase family protein ABO_1088 185 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 110833184 Common folP dihydropteroate synthase ABO_0323 218 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 110834027 Common ispD 4-diphosphocytidyl-2C-methyl-D-erythritol synthase ABO_1166 188 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 110834568 Common - hydrolase, alpha/beta fold family ABO_1707 166 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110835241 Common cobU CobU ABO_2380 129 COG2087 CobU, Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase Coenzyme metabolism 110832971 Common gshB glutathione synthetase ABO_0110 123 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 110835152 Nonpathogen - hypothetical protein ABO_2291 1 None None None 110834595 Common - hypothetical protein ABO_1734 23 COG1901 COG1901, Uncharacterized conserved protein Function unknown 110835242 Common phnA phnA protein ABO_2381 99 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 110835366 Common - hypothetical protein ABO_2505 46 COG4667 COG4667, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 110835513 Common engb GTP-binding protein ABO_2652 180 COG0218 COG0218, Predicted GTPase General function prediction only 110832995 Common - Sua5/YciO/YrdC/YwlC family protein ABO_0134 243 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 110833419 Common - toluene-tolerance protein ABO_0558 71 COG2854 Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component Secondary metabolites biosynthesis, transport, and catabolism 110833896 Common nqrD Na(+)-translocating NADH-quinone reductase subunit D ABO_1035 76 COG1347 NqrD, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD Energy production and conversion 110835495 Common - membrane protein, hemolysin III homolog, putative ABO_2634 119 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 110834154 Common crcB crcB protein ABO_1293 12 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 110833590 Common - deacylase, putative ABO_0729 55 COG3608 COG3608, Predicted deacylase General function prediction only 110834162 Common arsA Putative arsenical pump-driving ATPase ABO_1301 93 COG0003 ArsA, Predicted ATPase involved in chromosome partitioning Cell division and chromosome partitioning 110834388 Common - OmpA family protein ABO_1527 173 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110834480 Common - hypothetical protein ABO_1619 133 COG1739 COG1739, Uncharacterized conserved protein Function unknown 110834749 Common - sulfonate ABC transporter permease protein ABO_1888 188 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 110835259 Common speA arginine decarboxylase ABO_2398 171 COG1166 SpeA, Arginine decarboxylase (spermidine biosynthesis) Amino acid transport and metabolism 110833295 Nonpathogen - hypothetical protein ABO_0434 1 None None None 110835494 Common dps DNA-binding stress protein ABO_2633 137 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 110835302 Nonpathogen - hypothetical protein ABO_2441 1 None None None 110832907 Common - protein containing a von Willebrand factor type A domain ABO_0046 49 COG2425 COG2425, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 110835070 Common - iron-sulfur cluster-binding protein, putative ABO_2209 133 COG1600 COG1600, Uncharacterized Fe-S protein Energy production and conversion 110834635 Common - hypothetical protein ABO_1774 53 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 110835121 Common ntrB sensory box histidine kinase NtrB ABO_2260 218 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 110835509 Common - hypothetical protein ABO_2648 28 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 110834248 Common - S4 domain protein ABO_1387 205 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 110833961 Common etf electron transfer flavoprotein-ubiquinone oxidoreductase ABO_1100 108 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 110833738 Common gpmA Phosphoglycerate mutase ABO_0877 5 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 110834443 Common - DNA-damage-inducible protein ABO_1582 184 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 110834787 Common - hypothetical protein ABO_1926 39 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 110834487 Common cysM cysteine synthase B ABO_1626 227 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 110833660 Common rimM 16S rRNA processing protein RimM ABO_0799 151 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 110835548 Common gtrB TRAP-type transport system, large permease component ABO_2687 123 COG4664 FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large permease component Secondary metabolites biosynthesis, transport, and catabolism 110832963 Common cheW chemotaxis protein, putative ABO_0102 9 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 110835396 Common yfcd Putative Nudix hydrolase ABO_2535 34 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 110833483 Common aceE pyruvate dehydrogenase subunit E1 ABO_0622 154 COG2609 AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component Energy production and conversion 110832896 Common pyrB aspartate carbamoyltransferase catalytic subunit ABO_0035 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 110834717 Common - GTP-binding protein, putative ABO_1856 236 COG1160 COG1160, Predicted GTPases General function prediction only 110835120 Common ntrC two-component response regulator NtrC ABO_2259 221 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110833552 Common - hypothetical protein ABO_0691 70 COG1432 COG1432, Uncharacterized conserved protein Function unknown 110833005 Common - transcriptional regulator, AraC family ABO_0144 35 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110834467 Nonpathogen - hypothetical protein ABO_1606 1 None None None 110835114 Common - lipoprotein, putative ABO_2253 82 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 110834373 Common - sulfate permease protein ABO_1512 162 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 110835142 Common hisB imidazoleglycerol-phosphate dehydratase ABO_2281 213 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 110835208 Common - hypothetical protein ABO_2347 47 COG3332 COG3332, Uncharacterized conserved protein Function unknown 110833918 Common kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase ABO_1057 142 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 110834227 Common phoQ PhoQ ABO_1366 203 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110833335 Common - NAD+ synthase (glutamine-hydrolysing) ABO_0474 226 COG0171 NadE, NAD synthase Coenzyme metabolism 110834584 Common - hypothetical protein ABO_1723 81 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 110835127 Common - hypothetical protein ABO_2266 20 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 110833113 Common - hypothetical protein ABO_0252 57 COG2138 COG2138, Uncharacterized conserved protein Function unknown 110835566 Common - Na+/H+ antiporter, putative ABO_2705 73 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 110833023 Common rubB rubredoxin reductase ABO_0162 231 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 110834394 Common - transcriptional regulator, AraC family ABO_1533 73 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110833153 Nonpathogen - hypothetical protein ABO_0292 1 None None None 110834670 Common mutS DNA mismatch repair protein MutS ABO_1809 203 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 110835538 Common arsH arsenical resistance protein ArsH ABO_2677 75 COG0431 COG0431, Predicted flavoprotein General function prediction only 110834010 Common dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase ABO_1149 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 110835298 Common leuA 2-isopropylmalate synthase ABO_2437 211 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 110832872 Common - hypothetical protein ABO_0011 89 COG2607 COG2607, Predicted ATPase (AAA+ superfamily) General function prediction only 110834938 Common - hypothetical protein ABO_2077 2 None None None 110834188 Common pntB pyridine nucleotide transhydrogenase, B subunit ABO_1327 122 COG1282 PntB, NAD/NADP transhydrogenase beta subunit Energy production and conversion 110834793 Common - hypothetical protein ABO_1932 70 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 110835420 Common - hypothetical protein ABO_2559 219 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 110834153 Common - recombination factor protein RarA ABO_1292 237 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 110834351 Common - hypothetical protein ABO_1490 2 None None None 110834629 Common rnd ribonuclease D ABO_1768 109 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 110834449 Nonpathogen - hypothetical protein ABO_1588 2 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 110833636 Common - glycine cleavage system transcriptional repressor, putative ABO_0775 47 COG2716 GcvR, Glycine cleavage system regulatory protein Amino acid transport and metabolism 110834232 Common - hypothetical protein ABO_1371 4 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 110832945 Common - hypothetical protein ABO_0084 66 COG1718 RIO1, Serine/threonine protein kinase involved in cell cycle control Signal transduction mechanisms / Cell division and chromosome partitioning 110833616 Common tolQ biopolymer transport protein TolQ ABO_0755 146 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 110835008 Common dctM TRAP-type C4-dicarboxylate transport system,large permease component ABO_2147 122 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 110835570 Common alkH aldehyde dehydrogenase (NAD) ABO_2709 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 110834039 Nonpathogen - hypothetical protein ABO_1178 2 None None None 110834833 Common - aromatic acid decarboxylase, putative ABO_1972 152 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 110833513 Common - hypothetical protein ABO_0652 19 COG3313 COG3313, Predicted Fe-S protein General function prediction only 110835210 Common nudH (di)nucleoside polyphosphate hydrolase ABO_2349 108 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 110835395 Common - short-chain dehydrogenase/reductase, putative ABO_2534 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110834028 Common ispF 2C-methyl-D-erythritol 24-cyclodiphosphate synthase ABO_1167 186 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 110833502 Common - hypothetical protein ABO_0641 2 None None None 110834358 Common sdhB succinate dehydrogenase, iron-sulfur ABO_1497 204 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 110833133 Common - potassium uptake protein, TrkH family ABO_0272 117 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 110835016 Common - Na-solute symporter/sensory box histidinekinase, putative ABO_2155 223 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 110833558 Common kefB glutathione-regulated potassium-proton antiporter ABO_0697 209 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 110833878 Common erfK hypothetical protein ABO_1017 35 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 110835199 Nonpathogen - hemin uptake protein, putative ABO_2338 1 COG4256 HemP, Hemin uptake protein Inorganic ion transport and metabolism 110833657 Common - hypothetical protein ABO_0796 63 COG4137 COG4137, ABC-type uncharacterized transport system, permease component General function prediction only 110835014 Common - hypothetical protein ABO_2153 29 None None None 110835048 Common dnaB Replicative DNA helicase ABO_2187 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 110834788 Nonpathogen - hypothetical protein ABO_1927 2 None None None 110833494 Common groES chaperonin, 10 kDa ABO_0633 216 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 110833428 Common - hypothetical protein ABO_0567 89 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 110833457 Common murD UDP-N-acetylmuramoylalanine--D-glutamate ligase ABO_0596 211 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 110835508 Common - MutT/nudix family protein ABO_2647 5 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 110834357 Common kgd alpha-ketoglutarate decarboxylase ABO_1496 147 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 110832912 Common guaA glutamine amidotransferase ABO_0051 156 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 110835333 Common czcB cation efflux system protein ABO_2472 141 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110833708 Common - hypothetical protein ABO_0847 3 None None None 110833751 Common - hypothetical protein ABO_0890 6 COG4455 ImpE, Protein of avirulence locus involved in temperature-dependent protein secretion General function prediction only 110833460 Common murC UDP-N-acetylmuramate--L-alanine ligase ABO_0599 208 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 110834361 Common sdhC succinate dehydrogenase, cytochrome b556 subunit ABO_1500 90 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 110834619 Common - hypothetical protein ABO_1758 4 None None None 110833455 Common murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase ABO_0594 208 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 110834792 Common - hypothetical protein ABO_1931 6 COG2374 COG2374, Predicted extracellular nuclease General function prediction only 110835336 Common tnpA transposase ABO_2475 62 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 110835481 Common - hypothetical protein ABO_2620 34 COG2606 EbsC, Uncharacterized conserved protein Function unknown 110833940 Common - serine endopeptidase ABO_1079 32 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 110832928 Common - oxidoreductase with NAD+ or NADP+ as acceptor ABO_0067 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 110834395 Nonpathogen - hypothetical protein ABO_1534 1 None None None 110834301 Common - hypothetical protein ABO_1440 10 None None None 110835082 Common - hypothetical protein ABO_2221 160 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 110833957 Common - hypothetical protein ABO_1096 25 COG3687 COG3687, Predicted metal-dependent hydrolase General function prediction only 110833697 Common ccmF cytochrome c-type biogenesis protein CcmF ABO_0836 141 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 110833783 Common - hypothetical protein ABO_0922 17 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110834386 Common - periplasmic binding domain/transglycosylase SLTdomain fusion protein ABO_1525 163 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 110834664 Common - hypothetical protein ABO_1803 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 110833591 Common sopT sulfate adenylyltransferase ABO_0730 63 COG2046 MET3, ATP sulfurylase (sulfate adenylyltransferase) Inorganic ion transport and metabolism 110835139 Common hisF imidazole glycerol phosphate synthase subunit HisF ABO_2278 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 110834546 Nonpathogen - hypothetical protein ABO_1685 1 None None None 110834474 Common rnfG electron complex protein rnfG, putative ABO_1613 54 COG4659 RnfG, Predicted NADH:ubiquinone oxidoreductase, subunit RnfG Energy production and conversion 110834762 Common - hypothetical protein ABO_1901 15 COG4517 COG4517, Uncharacterized protein conserved in bacteria Function unknown 110835591 Common atpF ATP synthase F0, B subunit ABO_2730 161 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 110835271 Nonpathogen - gene fragment for glycerol kinase ABO_2411 1 None None None 110833170 Common fur transcriptional regulator Fur ABO_0309 192 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 110834005 Common tsf Translation elongation factor Ts (EF-Ts). ABO_1144 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 110834108 Common - cell division protein FtsK ABO_1247 15 COG3152 COG3152, Predicted membrane protein Function unknown 110834381 Common fabB 3-oxoacyl-(acyl carrier protein) synthase III ABO_1520 199 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 110834425 Common - transcriptional regulator, AraC family ABO_1564 76 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110834688 Common - hypothetical protein ABO_1827 28 COG3177 COG3177, Uncharacterized conserved protein Function unknown 110834402 Common - hydrolase ABO_1541 95 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110834733 Common iscS cysteine desulfurase ABO_1872 239 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 110834426 Common ompR DNA-binding response regulator OmpR ABO_1565 206 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110834000 Common - arsC related protein ABO_1139 108 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 110834063 Common lpxL2 lipid A biosynthesis lauroyl acyltransferase ABO_1202 96 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 110833873 Common topA DNA topoisomerase I ABO_1012 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 110835440 Common - hypothetical protein ABO_2579 97 COG1671 COG1671, Uncharacterized protein conserved in bacteria Function unknown 110835032 Common ribH riboflavin synthase, beta subunit ABO_2171 230 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 110833066 Common - hypothetical protein ABO_0205 137 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 110833471 Common - hypothetical protein ABO_0610 59 COG3024 COG3024, Uncharacterized protein conserved in bacteria Function unknown 110833287 Common - Glycerophosphoryl diester phosphodiesterase precursor ABO_0426 52 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 110833127 Common - cation multi-drug efflux protein, putative ABO_0266 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 110832966 Common cheR Chemotaxis protein methyltransferase ABO_0105 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 110833690 Common colS ColS ABO_0829 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110834417 Common - hypothetical protein ABO_1556 32 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 110835356 Common - hypothetical protein ABO_2495 50 COG3150 COG3150, Predicted esterase General function prediction only 110834058 Common - carboxylic ester hydrolase ABO_1197 164 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110834099 Common - enoyl-CoA hydratase/isomerase, putative ABO_1238 178 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 110834707 Nonpathogen - hypothetical protein ABO_1846 1 None None None 110834342 Common rrp-1 response regulator ABO_1481 214 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 110835453 Common gcvP-2 glycine dehydrogenase subunit 1 ABO_2592 172 COG0403 GcvP, Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain Amino acid transport and metabolism 110833631 Common nadA quinolinate synthetase ABO_0770 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 110834998 Common - hypothetical protein ABO_2137 184 COG0759 COG0759, Uncharacterized conserved protein Function unknown 110833962 Common etfB electron transfer flavoprotein, beta subunit ABO_1101 153 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 110834035 Common - GMC oxidoreductase family protein ABO_1174 90 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 110834349 Common gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase ABO_1488 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 110835068 Common - hypothetical protein ABO_2207 207 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 110834146 Common clpA ATP-dependent Clp protease, ATP-binding subunitClpA ABO_1285 236 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 110833677 Common - thioredoxin, putative ABO_0816 33 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 110833758 Nonpathogen - hypothetical protein ABO_0897 1 None None None 110834594 Common - hypothetical protein ABO_1733 45 COG4222 COG4222, Uncharacterized protein conserved in bacteria Function unknown 110834814 Common - hypothetical protein ABO_1953 200 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 110833902 Common - acetyltransferase, GNAT family, putative ABO_1040 36 COG0456 RimI, Acetyltransferases General function prediction only 110834458 Common - hypothetical protein ABO_1597 18 COG3540 PhoD, Phosphodiesterase/alkaline phosphatase D Inorganic ion transport and metabolism 110833605 Common - hypothetical protein ABO_0744 48 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110833108 Common - hypothetical protein ABO_0247 20 None None None 110833530 Common - hypothetical protein ABO_0669 12 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 110834210 Nonpathogen ccoQ cytochrome c oxidase, cbb3-type, CcoQ subunit, putative ABO_1349 1 COG4736 CcoQ, Cbb3-type cytochrome oxidase, subunit 3 Posttranslational modification, protein turnover, chaperones 110833352 Common - hypothetical protein ABO_0491 21 COG4798 COG4798, Predicted methyltransferase General function prediction only 110832974 Common - endonuclease, possible Holliday junction resolvase ABO_0113 165 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 110833749 Common - hypothetical protein ABO_0888 99 COG1403 McrA, Restriction endonuclease Defense mechanisms 110832906 Nonpathogen - hypothetical secreted protein ABO_0045 1 None None None 110834656 Nonpathogen - hypothetical protein ABO_1795 1 None None None 110834690 Common hsdS type I restriction-modification system, S subunit ABO_1829 48 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 110835278 Common - hypothetical protein ABO_2417 10 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 110834983 Nonpathogen - hypothetical protein ABO_2122 1 None None None 110833256 Common algA mannose-6-phosphate isomerase / mannose-1-phosphate guanylyl ABO_0395 164 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 110833971 Common - phosphoglycerol transferase ABO_1110 79 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 110833837 Nonpathogen - hypothetical protein ABO_0976 2 COG3165 COG3165, Uncharacterized protein conserved in bacteria Function unknown 110833303 Common - sensor histidine kinase ABO_0442 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110834015 Common fabZ (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase ABO_1154 187 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 110835524 Common - hypothetical protein ABO_2663 43 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 110834789 Common - hypothetical protein ABO_1928 15 None None None 110834864 Common - hypothetical protein ABO_2003 12 None None None 110834756 Common - phospholipase/carboxylesterase family protein ABO_1895 97 COG0400 COG0400, Predicted esterase General function prediction only 110833979 Common minE cell division topological specificity factorMinE ABO_1118 68 COG0851 MinE, Septum formation topological specificity factor Cell division and chromosome partitioning 110833327 Nonpathogen - hypothetical protein ABO_0466 1 COG4726 PilX, Tfp pilus assembly protein PilX Cell motility and secretion / Intracellular trafficking and secretion 110833551 Common dctM TRAP dicarboxylate transporter, putative ABO_0690 113 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 110833713 Common nrtB nitrate ABC transporter permease protein ABO_0852 188 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 110834799 Nonpathogen - hypothetical protein ABO_1938 2 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 110835106 Common hslU ATP-dependent protease ATP-binding subunit ABO_2245 213 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 110834567 Common - transcriptional regulator, TetR family ABO_1706 64 COG1309 AcrR, Transcriptional regulator Transcription 110833074 Common coaBC bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase ABO_0213 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 110833572 Common nrdA ribonucleotide-diphosphate reductase subunit alpha ABO_0711 228 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 110835293 Nonpathogen - hypothetical protein ABO_2432 1 None None None 110835579 Common ureE urease accessory protein UreE ABO_2718 65 COG2371 UreE, Urease accessory protein UreE Posttranslational modification, protein turnover, chaperones 110833037 Common - GTP pyrophosphokinase/Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase ABO_0176 206 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 110835170 Nonpathogen - hypothetical protein ABO_2309 1 None None None 110833445 Common gmhA phosphoheptose isomerase ABO_0584 123 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 110834620 Common - ABC1 family protein, putative ABO_1759 184 COG0661 AarF, Predicted unusual protein kinase General function prediction only 110835115 Common - hypothetical protein ABO_2254 20 None None None 110834645 Common - non-ribosomal peptide synthase fragment ABO_1784 220 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 110833123 Common dsbB disulfide bond formation protein B ABO_0262 57 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 110834401 Common fumA fumarate hydratase, putative ABO_1540 147 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 110832866 Common hns DNA-binding protein H-NS ABO_0005 32 COG2916 Hns, DNA-binding protein H-NS General function prediction only 110835321 Common ppk polyphosphate kinase ABO_2460 161 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 110833146 Common - transcriptional regulator ABO_0285 50 COG1309 AcrR, Transcriptional regulator Transcription 110834804 Common sulP Sulfate transporter 1.3. ABO_1943 158 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 110834972 Common - hydrolase, alpha/beta fold family, putative ABO_2111 53 COG2267 PldB, Lysophospholipase Lipid metabolism 110834682 Common - hypothetical protein ABO_1821 31 COG3784 COG3784, Uncharacterized protein conserved in bacteria Function unknown 110833279 Common rpmJ 50S ribosomal protein L36 ABO_0418 139 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 110833857 Common - hypothetical protein ABO_0996 19 COG3139 COG3139, Uncharacterized protein conserved in bacteria Function unknown 110833336 Common - competence lipoprotein ComL, putative ABO_0475 123 COG4105 ComL, DNA uptake lipoprotein General function prediction only 110835432 Common - thiamine biosynthesis protein ThiS ABO_2571 53 COG2104 ThiS, Sulfur transfer protein involved in thiamine biosynthesis Coenzyme metabolism 110833029 Common recG ATP-dependent DNA helicase RecG ABO_0168 212 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 110833099 Common nhaD Na+/H+ antiporter, putative ABO_0238 34 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 110834954 Common - peptide synthetase, putative ABO_2093 220 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 110834612 Common gyrA DNA gyrase, subunit A ABO_1751 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 110834879 Common - sensor histidine kinase/response regulator ABO_2018 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110835028 Common rre2 GGDEF domain protein ABO_2167 177 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 110835563 Common ligA DNA ligase ABO_2702 38 COG1793 CDC9, ATP-dependent DNA ligase DNA replication, recombination, and repair 110835427 Common ftsY Cell division protein FtsY ABO_2566 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 110833085 Common - hypothetical protein ABO_0224 18 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 110834369 Common - uncharacterized iron-regulated membrane protein ABO_1508 79 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 110833788 Common - DegT/DnrJ/EryC1/StrS aminotransferase ABO_0927 194 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 110834431 Common sth soluble pyridine nucleotide transhydrogenase ABO_1570 242 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 110834171 Common cheB protein-glutamate methylesterase ABO_1310 150 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 110834534 Common - ABC efflux transporter, permease protein, putative ABO_1673 28 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 110833992 Common - hypothetical protein ABO_1131 49 None None None 110834729 Common csdA cysteine sulfinate desulfinase ABO_1868 237 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 110833374 Common - RNA methyltransferase, TrmH family, group 1 ABO_0513 155 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 110833408 Common narK nitrite extrusion protein ABO_0547 154 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 110833399 Common - hypothetical protein ABO_0538 34 COG4642 COG4642, Uncharacterized protein conserved in bacteria Function unknown 110833425 Common - hypothetical protein ABO_0564 26 COG5316 COG5316, Uncharacterized conserved protein Function unknown 110834030 Common pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase ABO_1169 155 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 110833921 Common rne phosphoric diester hydrolase ABO_1060 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 110833742 Common ydaH AbgT putative transporter family ABO_0881 38 COG2978 AbgT, Putative p-aminobenzoyl-glutamate transporter Coenzyme metabolism 110834893 Common - Two-component, sensor histidine protein kinase, putative ABO_2032 205 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110835347 Common fpvA Ferripyoverdine receptor precursor ABO_2486 98 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 110833859 Common pepN aminopeptidase N ABO_0998 158 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 110834533 Common - hypothetical protein ABO_1672 21 COG3495 COG3495, Uncharacterized protein conserved in bacteria Function unknown 110835578 Nonpathogen ureJ urease accessory protein UreJ ABO_2717 5 COG2370 HupE, Hydrogenase/urease accessory protein Posttranslational modification, protein turnover, chaperones 110832957 Common - SPFH domain/Band 7 family protein ABO_0096 208 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 110833598 Common - ParA family protein ABO_0737 208 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 110834943 Common tnpA transposase, putative ABO_2082 78 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 110835182 Common hemD uroporphyrinogen-III synthase ABO_2321 81 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 110834632 Common - hypothetical protein ABO_1771 4 None None None 110835549 Common - acyl-CoA thioester hydrolase, putative ABO_2688 128 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 110835124 Common - hypothetical protein ABO_2263 116 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 110834370 Common gltX glutamyl-tRNA synthetase ABO_1509 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 110834786 Nonpathogen - hypothetical protein ABO_1925 1 None None None 110835317 Common - hypothetical protein ABO_2456 49 COG2928 COG2928, Uncharacterized conserved protein Function unknown 110835389 Common - hypothetical protein ABO_2528 139 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 110833022 Common - hypothetical protein ABO_0161 4 None None None 110833933 Common pabC 4-amino-4-deoxychorismate lyase ABO_1072 89 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 110834241 Common - hydrolase, alpha/beta fold protein family, putative ABO_1380 23 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110832970 Common pilG type IV pili response regulator PilG ABO_0109 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110833780 Common - glycosyl transferase, putative ABO_0919 226 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110832909 Common - nucleotide-binding protein ABO_0048 107 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 110833270 Common rplE 50S ribosomal protein L5 ABO_0409 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 110835141 Common hisH glutamine amidotransferase subunit hisH ABO_2280 215 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 110835098 Common pilM type IV fimbrial biogenesis protein PilM ABO_2237 72 COG4972 PilM, Tfp pilus assembly protein, ATPase PilM Cell motility and secretion / Intracellular trafficking and secretion 110834157 Common - hypothetical protein ABO_1296 173 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 110833519 Nonpathogen - hypothetical protein ABO_0658 1 None None None 110833546 Common - hypothetical protein ABO_0685 16 COG4324 COG4324, Predicted aminopeptidase General function prediction only 110832871 Common tag DNA-3-methyladenine glycosidase I ABO_0010 132 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 110834190 Common pntA pyridine nucleotide transhydrogenase A subunit. ABO_1329 167 COG3288 PntA, NAD/NADP transhydrogenase alpha subunit Energy production and conversion 110835431 Common - hypothetical protein ABO_2570 49 COG2363 COG2363, Uncharacterized small membrane protein Function unknown 110833986 Common - hypothetical protein ABO_1125 5 None None None 110833442 Common sspA stringent starvation protein A ABO_0581 105 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 110834221 Common - copper-translocating P-type ATPase ABO_1360 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 110835479 Common ahcy S-adenosyl-L-homocysteine hydrolase ABO_2618 178 COG0499 SAM1, S-adenosylhomocysteine hydrolase Coenzyme metabolism 110835255 Common ephD oxidoreductase, short chain dehydrogenase/reductase family ABO_2394 231 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110833112 Common - deacetylase family protein ABO_0251 160 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 110834194 Common - hypothetical protein ABO_1333 39 COG2715 SpmA, Uncharacterized membrane protein, required for spore maturation in B.subtilis. General function prediction only 110834851 Common uraA uracil transporter ABO_1990 124 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 110834046 Common - cytochrome c family protein ABO_1185 68 COG0672 FTR1, High-affinity Fe2+/Pb2+ permease Inorganic ion transport and metabolism 110834130 Common - hypothetical protein ABO_1268 4 None None None 110833359 Nonpathogen - hypothetical protein ABO_0498 1 None None None 110833152 Common - ABC transporter, ATP-binding protein ABO_0291 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 110834962 Common - hypothetical protein ABO_2101 28 COG2832 COG2832, Uncharacterized protein conserved in bacteria Function unknown 110834484 Common relA GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (ppGpp synthetase I) ABO_1623 205 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 110833946 Common - nitrate transport protein ABO_1085 146 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 110835539 Common acr3 arsenical pump membrane protein ACR3 ABO_2678 139 COG0798 ACR3, Arsenite efflux pump ACR3 and related permeases Inorganic ion transport and metabolism 110834187 Common - salt-induced outer membrane protein, putative ABO_1326 31 COG3137 COG3137, Putative salt-induced outer membrane protein Cell envelope biogenesis, outer membrane 110833789 Common wbpM polysaccharide biosynthesis protein ABO_0928 150 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110834575 Common - hypothetical protein ABO_1714 57 COG3030 FxsA, Protein affecting phage T7 exclusion by the F plasmid General function prediction only 110834217 Common czcA2 heavy metal RND efflux transporter, CzcA family ABO_1356 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 110832890 Common - hypothetical protein ABO_0029 9 COG1904 UxaC, Glucuronate isomerase Carbohydrate transport and metabolism 110834691 Common hsdM type I restriction-modification system, M subunit ABO_1830 161 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 110834908 Common pdxA pyridoxal phosphate biosynthetic protein PdxA ABO_2047 159 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 110834481 Nonpathogen - hypothetical protein ABO_1620 1 None None None 110833296 Common - hypothetical protein ABO_0435 112 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 110834071 Common clpP ATP-dependent Clp protease, proteolytic subunitClpP ABO_1210 212 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 110835582 Common ureA urease, gamma subunit ABO_2721 96 COG0831 UreA, Urea amidohydrolase (urease) gamma subunit Amino acid transport and metabolism 110835595 Common parB chromosome partitioning protein ParB ABO_2734 187 COG1475 Spo0J, Predicted transcriptional regulators Transcription 110835534 Common - hypothetical protein ABO_2673 68 COG2119 COG2119, Predicted membrane protein Function unknown 110833488 Common - hypothetical protein ABO_0627 130 COG2096 COG2096, Uncharacterized conserved protein Function unknown 110833668 Common thrC threonine synthase ABO_0807 159 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 110834937 Common - hypothetical protein ABO_2076 17 COG4456 VagC, Virulence-associated protein and related proteins Function unknown 110835214 Common copA Cu(I)-exporting ATPase ABO_2353 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 110833231 Common - hypothetical protein ABO_0370 11 COG3087 FtsN, Cell division protein Cell division and chromosome partitioning 110834887 Common trpG anthranilate synthase, component II ABO_2026 236 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 110833486 Common - Probable two-component response regulatory protein ABO_0625 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110833915 Common exbD1 biopolymer transport protein ExbD ABO_1054 35 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 110833732 Common ccmB Heme exporter protein B ABO_0871 77 COG2386 CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 110833898 Common nqrF Na(+)-translocating NADH-quinone reductase subunit F ABO_1037 154 COG2871 NqrF, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF Energy production and conversion 110834161 Common - hypothetical protein ABO_1300 70 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 110834948 Common - siderophore biosynthesis protein, putative ABO_2087 38 COG2977 EntD, Phosphopantetheinyl transferase component of siderophore synthetase Secondary metabolites biosynthesis, transport, and catabolism 110835087 Common - hypothetical protein ABO_2226 5 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 110835447 Common - hypothetical protein ABO_2586 11 None None None 110834322 Common trpB tryptophan synthase subunit beta ABO_1461 226 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 110835172 Nonpathogen - hypothetical protein ABO_2311 1 None None None 110833705 Common oadA pyruvate carboxylase subunit B ABO_0844 203 COG5016 COG5016, Pyruvate/oxaloacetate carboxyltransferase Energy production and conversion 110833767 Common wzb Low molecular weight protein-tyrosine-phosphatase ABO_0906 31 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 110835523 Common - acyl-CoA dehydrogenase ABO_2662 166 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110833901 Common - hypothetical protein ABO_1041 45 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 110835071 Common orn oligoribonuclease ABO_2210 88 COG1949 Orn, Oligoribonuclease (3'->5' exoribonuclease) RNA processing and modification 110835391 Common glnK-2 nitrogen regulatory protein P-II ABO_2530 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 110833235 Common rplK 50S ribosomal protein L11 ABO_0374 248 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 110834493 Common - hypothetical protein ABO_1632 18 COG4726 PilX, Tfp pilus assembly protein PilX Cell motility and secretion / Intracellular trafficking and secretion 110833625 Common - hypothetical protein ABO_0764 51 COG3272 COG3272, Uncharacterized conserved protein Function unknown 110833735 Common ccmE Cytochrome c-type biogenesis protein ccmE. ABO_0874 92 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 110834060 Common - hypothetical protein ABO_1199 30 COG1514 LigT, 2'-5' RNA ligase Translation, ribosomal structure and biogenesis 110832925 Common - hypothetical protein ABO_0064 50 COG2703 COG2703, Hemerythrin Inorganic ion transport and metabolism 110834261 Common - ABC transporter, ATP-binding protein ABO_1401 249 COG4181 COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 110835164 Common - type II secretion system protein, putative ABO_2303 207 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 110833726 Nonpathogen - hypothetical protein ABO_0865 1 None None None 110834445 Nonpathogen - hypothetical protein ABO_1584 1 None None None 110833200 Common folK-1 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase ABO_0339 202 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 110833608 Common - hypothetical protein ABO_0747 6 None None None 110835512 Common - cytochrome c-type protein ABO_2651 46 COG3245 CycB, Cytochrome c5 Energy production and conversion 110835130 Common typA GTP-binding protein TypA/BipA ABO_2269 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 110835576 Common ureG urease accessory protein UreG ABO_2715 140 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 110834700 Common rplT 50S ribosomal protein L20 ABO_1839 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 110834137 Common - MutT/NUDIX family protein ABO_1276 53 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 110834869 Common aroQ 3-dehydroquinate dehydratase ABO_2008 170 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 110834054 Nonpathogen - SET domain protein lysine methyltransferase, putative ABO_1193 4 COG2940 COG2940, Proteins containing SET domain General function prediction only 110833672 Common - hypothetical protein ABO_0811 23 COG2346 COG2346, Truncated hemoglobins General function prediction only 110833728 Common - hypothetical protein ABO_0867 47 COG2954 COG2954, Uncharacterized protein conserved in bacteria Function unknown 110833661 Common trmD tRNA (Guanine-N1)-methyltransferase ABO_0800 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 110834203 Common hemF coproporphyrinogen III oxidase ABO_1342 203 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 110833865 Common rmf ribosome modulation factor ABO_1004 21 COG3130 Rmf, Ribosome modulation factor Translation, ribosomal structure and biogenesis 110833433 Common - long-chain fatty acid transporter, putative ABO_0572 76 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 110834070 Common tig trigger factor protein ABO_1209 216 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 110834085 Common rnhA ribonuclease H ABO_1224 179 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 110833904 Common - hypothetical protein ABO_1043 21 None None None 110833212 Common mrcB penicillin-binding protein ABO_0351 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 110833754 Common - hypothetical protein ABO_0893 11 None None None 110834716 Common - hypothetical protein ABO_1855 76 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110834296 Common - para-aminobenzoate synthase component I, putative ABO_1435 221 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 110833060 Common - transcriptional regulator, AraC family ABO_0199 69 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110833243 Common fusA elongation factor (EF) ABO_0382 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 110834344 Common - hydrolase ABO_1483 105 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110834975 Common - HIT family protein ABO_2114 228 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 110834147 Common infA translation initiation factor IF-1 ABO_1286 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 110834653 Common - small multidrug resistance protein ABO_1792 143 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 110834500 Common algU RNA polymerase sigma factor RpoE ABO_1639 171 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110834648 Common - transposase, OrfA ABO_1787 7 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 110833555 Common acnA aconitate hydratase ABO_0694 222 COG1048 AcnA, Aconitase A Energy production and conversion 110833065 Common - hypothetical protein ABO_0204 11 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 110835140 Common hisA phosphoribosylformimino-5-aminoimidazolecarboxam ide ribotide ABO_2279 214 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 110834810 Common holA DNA polymerase III, delta subunit ABO_1949 103 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 110835067 Common amiB N-acetylmuramoyl-L-alanine amidase ABO_2206 175 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 110834416 Common - hypothetical protein ABO_1555 3 None None None 110834676 Nonpathogen - hypothetical protein ABO_1815 1 None None None 110834624 Nonpathogen - hypothetical protein ABO_1763 1 None None None 110832895 Common pyrC-2 dihydroorotase, multifunctional complex type ABO_0034 202 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 110834252 Common - Sua5/YciO/YrdC/YwlC family protein ABO_1391 229 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 110834518 Nonpathogen - hypothetical protein ABO_1657 2 None None None 110833779 Common - glycosyl transferase, group 2 family protein, putative ABO_0918 129 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110833646 Common purL phosphoribosylformylglycinamidine synthase ABO_0785 233 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 110834220 Nonpathogen - hypothetical protein ABO_1359 2 None None None 110835033 Common dhbP bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein ABO_2172 229 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 110834775 Nonpathogen - hypothetical protein ABO_1914 5 None None None 110834957 Common - transcriptional regulator, TetR family ABO_2096 91 COG1309 AcrR, Transcriptional regulator Transcription 110834642 Nonpathogen - transposase OrfAB, subunit B ABO_1781 2 None None None 110833386 Common moeB molybdopterin biosynthesis MoeB protein ABO_0525 221 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 110833522 Common rrmA rRNA (guanine-N1-)-methyltransferase ABO_0661 57 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110835249 Common - hypothetical protein ABO_2388 19 COG3671 COG3671, Predicted membrane protein Function unknown 110833610 Common aspS aspartyl-tRNA synthetase ABO_0749 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110833993 Common plsB glycerol-3-phosphate acyltransferase ABO_1132 48 COG2937 PlsB, Glycerol-3-phosphate O-acyltransferase Lipid metabolism 110835111 Common tatA sec-independent protein translocase protein tatA/E homolog. ABO_2250 57 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 110835102 Common priA primosomal protein N` ABO_2241 212 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 110833412 Common - Sigma 54 modulation protein / S30EA r ABO_0551 151 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 110834699 Common pheS Phenylalanyl-tRNA synthetase, alpha subunit ABO_1838 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 110834175 Common gspG general secretion pathway protein GspG ABO_1314 72 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 110834281 Common - hypothetical protein ABO_1420 3 None None None 110835233 Nonpathogen - hypothetical protein ABO_2372 1 None None None 110834461 Common anr transcriptional regulator Anr ABO_1600 147 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110833046 Common fadE-1 acyl-CoA dehydrogenase, putative ABO_0185 148 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110833584 Common - oxidoreductase ABO_0723 224 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110834103 Common - hypothetical protein ABO_1242 59 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 110833927 Common rpmF 50S ribosomal protein L32 ABO_1066 109 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 110833159 Common - ATP-binding cassette (ABC) transporters, permease, putative ABO_0298 154 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 110834526 Common - Hypotetical protein ABO_1665 81 COG3972 COG3972, Superfamily I DNA and RNA helicases General function prediction only 110834507 Common ung uracil-DNA glycosylase ABO_1646 128 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 110832936 Common kefB glutathione-regulated potassium-protonantiporter ABO_0075 158 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 110834923 Common dnaG DNA primase ABO_2062 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 110834985 Common cysJ NADPH-sulfite reductase ABO_2124 84 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 110834552 Common pfeR DNA-binding response regulator ABO_1691 203 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110835608 Common - RND efflux membrane fusion protein, putative ABO_2747 173 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110835234 Common - hypothetical protein ABO_2373 9 None None None 110833198 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase ABO_0337 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 110834807 Common - hypothetical protein ABO_1946 55 COG1434 COG1434, Uncharacterized conserved protein Function unknown 110832924 Common - hypothetical protein ABO_0063 51 COG1944 COG1944, Uncharacterized conserved protein Function unknown 110833388 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B ABO_0527 211 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 110833987 Common mobA molybdopterin-guanine dinucleotide biosynthesisprotein A ABO_1126 75 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 110834912 Common - hypothetical protein ABO_2051 42 None None None 110833514 Common - hypothetical protein ABO_0653 21 COG0824 FcbC, Predicted thioesterase General function prediction only 110833807 Common - cysZ family protein, putative ABO_0946 40 COG2981 CysZ, Uncharacterized protein involved in cysteine biosynthesis Amino acid transport and metabolism 110835611 Common - transcriptional regulator, TetR family ABO_2750 92 COG1309 AcrR, Transcriptional regulator Transcription 110834179 Common gspK general secretion pathway protein GspK ABO_1318 28 COG3156 PulK, Type II secretory pathway, component PulK Intracellular trafficking and secretion 110833283 Common rpoA DNA-directed RNA polymerase subunit alpha ABO_0422 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 110833260 Common rplW 50S ribosomal protein L23 ABO_0399 212 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 110833053 Nonpathogen - hypothetical protein ABO_0192 2 None None None 110833768 Common wzc tyrosine-protein kinase ABO_0907 186 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 110834860 Common - hypothetical protein ABO_1999 22 COG5345 COG5345, Uncharacterized protein conserved in bacteria Function unknown 110834601 Common - ComEA-related protein ABO_1740 109 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 110832862 Common dnaA chromosomal replication initiator protein DnaA ABO_0001 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 110834928 Nonpathogen - hypothetical protein ABO_2067 2 None None None 110835380 Common - response regulator ABO_2519 146 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110833143 Common - monooxygenase, flavin-binding family ABO_0282 72 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 110835402 Common phoR sensory box histidine kinase PhoR ABO_2541 217 COG4252 COG4252, Predicted transmembrane sensor domain Signal transduction mechanisms 110834746 Common - hypothetical protein ABO_1885 15 None None None 110833568 Common - hypothetical protein ABO_0707 29 None None None 110834475 Common rnfE SoxR-reducing system protein RsxE ABO_1614 76 COG4660 RnfE, Predicted NADH:ubiquinone oxidoreductase, subunit RnfE Energy production and conversion 110833792 Common - hypothetical protein ABO_0931 123 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 110833338 Common - hypothetical protein ABO_0477 179 COG1496 COG1496, Uncharacterized conserved protein Function unknown 110833794 Nonpathogen - hypothetical protein ABO_0933 1 None None None 110834506 Common fadC enoyl-CoA hydratase ABO_1645 137 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 110834512 Common recJ Single-stranded-DNA-specific exonuclease RecJ ABO_1651 195 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 110833864 Common pyrD dihydroorotate dehydrogenase; (DHO) dehydrogenase ABO_1003 236 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 110835073 Common glpE thiosulfate sulfurtransferase ABO_2212 147 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 110834520 Common dsm C-5 cytosine-specific DNA methylase family protein ABO_1659 130 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 110834583 Common - ABC transporter ATP-binding protein ABO_1722 238 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 110834763 Common - hypothetical protein ABO_1902 7 None None None 110834295 Common - transcriptional regulator, GntR family ABO_1434 139 COG1802 GntR, Transcriptional regulators Transcription 110835480 Common metF 5,10-methylenetetrahydrofolate reductase ABO_2619 141 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 110833698 Common dsbE thiol:disulfide interchange protein DsbE ABO_0837 120 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 110835426 Common - zinc protease, putative ABO_2565 194 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 110833842 Common - hypothetical protein ABO_0981 87 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 110833575 Common glpK glycerol kinase ABO_0714 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 110835320 Common hemB delta-aminolevulinic acid dehydratase ABO_2459 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 110834006 Common pyrH uridylate kinase ABO_1145 231 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 110832967 Common - Methyl-accepting chemotaxis protein ABO_0106 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 110833168 Common - hypothetical protein ABO_0307 63 COG2914 COG2914, Uncharacterized protein conserved in bacteria Function unknown 110835583 Common ureD urease accessory protein UreD ABO_2722 70 COG0829 UreH, Urease accessory protein UreH Posttranslational modification, protein turnover, chaperones 110834432 Common - hypothetical protein ABO_1571 96 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 110834128 Common glcB malate synthase G ABO_1267 80 COG2225 AceB, Malate synthase Energy production and conversion 110834091 Common sohB predicted inner membrane peptidase ABO_1230 189 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 110835456 Common - hypothetical protein ABO_2595 5 None None None 110832960 Common cybB cytochrome B651 ABO_0099 83 COG3038 CybB, Cytochrome B561 Energy production and conversion 110835183 Common hemC porphobilinogen deaminase ABO_2322 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 110834894 Common - SurF1 Family protein, putative ABO_2033 40 COG3346 COG3346, Uncharacterized conserved protein Function unknown 110833903 Common - glycerophosphoryl diester phosphodiesterase, putative ABO_1042 173 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 110833599 Common - hypothetical protein ABO_0738 10 None None None 110835185 Common algZ two-component system sensor protein, alginate biosynthesis ABO_2324 102 COG2972 COG2972, Predicted signal transduction protein with a C-terminal ATPase domain Signal transduction mechanisms 110833427 Common - hypothetical protein ABO_0566 102 COG0327 COG0327, Uncharacterized conserved protein Function unknown 110833409 Common ptsO Phosphotransferase system ABO_0548 108 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 110834307 Common - ARD/ARD' family protein ABO_1446 37 COG1791 COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 110833107 Common - hypothetical protein ABO_0246 42 COG3530 COG3530, Uncharacterized protein conserved in bacteria Function unknown 110834902 Common - NLP/P60 family protein ABO_2041 126 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 110833684 Common - conserved hypothetical protein GGDEF domain ABO_0823 175 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 110833630 Common cfa cyclopropane-fatty-acyl-phospholipid synthase ABO_0769 128 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 110835178 Common - Paraquat-inducible protein B, putative ABO_2317 66 COG3008 PqiB, Paraquat-inducible protein B General function prediction only 110834984 Common - transcriptional regulator, LysR-family ABO_2123 165 COG0583 LysR, Transcriptional regulator Transcription 110833854 Common - hypothetical protein ABO_0993 5 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 110833473 Common pilD Leaderpeptidase and N-methyltransferase ABO_0612 148 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 110833261 Common rplB 50S ribosomal protein L2 ABO_0400 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 110832954 Common - transcriptional regulator, AraC family, putative ABO_0093 108 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 110833219 Common - voltage-gated chloride channel family protein ABO_0358 150 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 110833606 Common - hypothetical protein ABO_0745 140 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110834654 Common - cobalamin synthesis protein/P47K family protein ABO_1793 126 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 110834018 Common rnhB ribonuclease H ABO_1157 238 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 110833032 Common purE phosphoribosylaminoimidazole carboxylase ABO_0171 232 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 110832994 Common dprA peptide deformylase, DNA processing protein ABO_0133 209 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 110835223 Common moaA molybdenum cofactor biosynthesis protein A ABO_2362 202 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 110833187 Common - Protein-export membrane protein ABO_0326 26 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 110833351 Common - transcriptional regulator, TetR family ABO_0490 8 COG1309 AcrR, Transcriptional regulator Transcription 110834459 Common - sensor histidine kinase/response regulator ABO_1598 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110833134 Common rbn ribonuclease BN family protein ABO_0273 43 COG1295 Rbn, Predicted membrane protein Function unknown 110832951 Common - hydrolase, alpha/beta fold family, putative ABO_0089 71 COG0429 COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 110834675 Common - hypothetical protein ABO_1814 40 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 110834867 Common - thioredoxin family protein, putative ABO_2006 163 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 110832944 Common - transposase, putative ABO_0083 135 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 110835473 Common fda fructose-1,6-bisphosphate aldolase ABO_2612 176 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 110835361 Common tolC outer membrane protein tolc precursor. ABO_2500 126 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110833255 Common algG Poly(beta-D-mannuronate) C5 epimerase [Precursor] ABO_0394 2 None None None 110834020 Common accA acetyl-CoA carboxylase carboxyltransferase subunit alpha ABO_1159 201 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 110834535 Common - ABC transporter, ATP-binding protein, putative ABO_1674 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 110833879 Common nagZ Beta-hexosaminidase ABO_1018 171 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 110834326 Common asd-1 aspartate-semialdehyde dehydrogenase ABO_1465 219 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 110835561 Common - hypothetical protein ABO_2700 6 None None None 110833747 Common - alcohol/choline dehydrogenase ABO_0886 93 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 110834708 Common - ABC transporter, ATP-binding protein, permease, putative ABO_1847 108 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 110833719 Common - oxidoreductase ABO_0858 70 COG1017 Hmp, Hemoglobin-like flavoprotein Energy production and conversion 110835467 Common rpiA ribose 5-phosphate isomerase ABO_2606 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 110833974 Common - sensor histidine kinase/response regulator ABO_1113 25 COG2203 FhlA, FOG: GAF domain Signal transduction mechanisms 110833712 Common nrtC nitrate transport ATP-binding protein ABO_0851 77 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 110833748 Nonpathogen - hypothetical protein ABO_0887 12 None None None 110833420 Common - toluene-tolerance protein ABO_0559 74 COG5007 COG5007, Predicted transcriptional regulator, BolA superfamily Transcription 110835301 Common - enoyl-CoA hydratase/isomerase, putative ABO_2440 170 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 110834829 Common exbD2 ferric siderophore transport system,innermembrane protein E ABO_1968 35 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 110835029 Common pgpA phosphatidylglycerophosphatase A ABO_2168 105 COG1267 PgpA, Phosphatidylglycerophosphatase A and related proteins Lipid metabolism 110833000 Common - anhydrase, family 3 protein ABO_0139 188 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 110834424 Common purU formyltetrahydrofolate deformylase ABO_1563 215 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 110835556 Nonpathogen - hypothetical protein ABO_2695 1 None None None 110834713 Common xseA Exodeoxyribonuclease VII, large subunit ABO_1852 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 110835485 Nonpathogen - hypothetical protein ABO_2624 4 None None None 110833180 Common greA transcription elongation factor GreA ABO_0319 204 COG0782 GreA, Transcription elongation factor Transcription 110833876 Common - hypothetical protein ABO_1015 9 None None None 110835272 Common - hypothetical protein ABO_2410 16 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 110834780 Common - hypothetical protein ABO_1919 49 None None None 110833361 Common queA S-adenosylmethionine:tRNAribosyltransferase-isom e rase ABO_0500 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 110833741 Common queF 7-cyano-7-deazaguanine reductase ABO_0880 107 COG2904 COG2904, Uncharacterized protein conserved in bacteria Function unknown 110833092 Nonpathogen - hypothetical protein ABO_0231 1 None None None 110833870 Common lexA LexA repressor ABO_1009 172 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 110835275 Common AKR1A1 aldehyde reductase ABO_2414 182 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 110834878 Common - cAMP-dependent protein kinase regulatory chain ABO_2017 45 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110834936 Common - Transcriptional repressor protein ABO_2075 177 COG1475 Spo0J, Predicted transcriptional regulators Transcription 110834098 Common fabG acetyl-CoA carboxylase, biotin carboxylase ABO_1237 231 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 110833525 Common - hypothetical protein ABO_0664 31 COG3806 ChrR, Transcriptional activator Transcription 110834385 Nonpathogen - hypothetical protein ABO_1524 1 None None None 110833963 Common etfA electron transfer flavoprotein, alpha subunit ABO_1102 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 110834067 Common ppiB peptidyl-prolyl isomerase ABO_1206 200 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 110833050 Common - short chain dehydrogenase, putative ABO_0189 235 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110835072 Common - ribosome-associated GTPase ABO_2211 163 COG1162 COG1162, Predicted GTPases General function prediction only 110834055 Common rluA ribosomal large subunit pseudouridine synthase A ABO_1194 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 110833920 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase ABO_1059 205 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 110833639 Common - metallo-beta-lactamase family protein ABO_0778 63 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 110834253 Common - Polymerase and Histidinol Phosphatase PHP, putative ABO_1392 127 COG0613 COG0613, Predicted metal-dependent phosphoesterases (PHP family) General function prediction only 110835357 Common - icc protein, putative ABO_2496 87 COG1409 Icc, Predicted phosphohydrolases General function prediction only 110833691 Common - hypothetical protein ABO_0830 6 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 110833234 Common nusG transcription antitermination protein NusG ABO_0373 215 COG0250 NusG, Transcription antiterminator Transcription 110834949 Common - ferric iron reductase protein, putative ABO_2088 21 COG4114 FhuF, Uncharacterized Fe-S protein General function prediction only 110835575 Common - hypothetical protein ABO_2714 2 None None None 110835594 Nonpathogen atpI ATP synthase, I subunit ABO_2733 1 COG3312 AtpI, F0F1-type ATP synthase, subunit I Energy production and conversion 110833492 Common - hypothetical protein ABO_0631 73 COG3695 COG3695, Predicted methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 110833128 Common - Multidrug resistance protein ABO_0267 110 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 110835002 Nonpathogen - transcriptional regulator, AraC family ABO_2141 6 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 110833305 Common - hypothetical protein ABO_0444 185 COG0661 AarF, Predicted unusual protein kinase General function prediction only 110835500 Common - hypothetical protein ABO_2639 87 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 110833016 Common znuA High-affinity zinc uptake system protein znuA precursor. ABO_0155 47 COG4531 ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 110833893 Common nqrA Na(+)-translocating NADH-quinone reductase subunit A ABO_1032 39 COG1726 NqrA, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA Energy production and conversion 110834038 Common pdxB erythronate-4-phosphate dehydrogenase ABO_1177 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 110835506 Common - hydrolase, alpha/beta hydrolase fold family, putative ABO_2645 107 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110835193 Common dapF diaminopimelate epimerase ABO_2332 203 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 110835267 Common - paraquat-inducible protein, putative ABO_2406 53 COG2995 PqiA, Uncharacterized paraquat-inducible protein A Function unknown 110833400 Common - hypothetical protein ABO_0539 62 COG3028 COG3028, Uncharacterized protein conserved in bacteria Function unknown 110833288 Common uvrA excinuclease ABC, A subunit ABO_0427 232 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 110833624 Common - hypothetical protein ABO_0763 21 None None None 110835348 Common fpvB ferripyoverdine receptor precursor ABO_2487 89 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 110832984 Nonpathogen - fimbrial protein ABO_0123 2 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 110835610 Common fumC fumarate hydratase ABO_2749 231 COG0114 FumC, Fumarase Energy production and conversion 110833302 Common - hypothetical protein ABO_0441 49 COG3552 CoxE, Protein containing von Willebrand factor type A (vWA) domain General function prediction only 110833822 Common - hypothetical protein ABO_0961 25 COG3687 COG3687, Predicted metal-dependent hydrolase General function prediction only 110834185 Common metH B12-dependent methionine synthase ABO_1324 180 COG1410 MetH, Methionine synthase I, cobalamin-binding domain Amino acid transport and metabolism 110834150 Common trxB thioredoxin-disulfide reductase ABO_1289 245 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 110834111 Common - transcriptional regulator, AraC family ABO_1250 76 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110833941 Nonpathogen - hypothetical protein ABO_1080 9 None None None 110832911 Nonpathogen - hypothetical protein ABO_0050 1 None None None 110833547 Common - hypothetical protein ABO_0686 32 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 110834440 Common - enolase ABO_1579 26 COG2968 COG2968, Uncharacterized conserved protein Function unknown 110834131 Common - hypothetical protein ABO_1270 2 None None None 110834721 Common ispG 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. ABO_1860 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 110833487 Common - phosphotransferase ABO_0626 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110835019 Common - putative sodium/solute symporter ABO_2158 160 COG4147 DhlC, Predicted symporter General function prediction only 110834757 Common - hypothetical protein ABO_1896 4 None None None 110833771 Common rmlB dTDP-glucose 4,6-dehydratase ABO_0910 232 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 110834400 Common - hypothetical protein ABO_1539 69 COG0431 COG0431, Predicted flavoprotein General function prediction only 110834233 Common chpR PemI-like protein ABO_1372 14 COG2336 MazE, Growth regulator Signal transduction mechanisms 110833207 Common - aminotransferase, putative ABO_0346 237 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 110835010 Common - transcriptional regulator, MarR family ABO_2149 40 COG1846 MarR, Transcriptional regulators Transcription 110834618 Common - hypothetical protein ABO_1757 4 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 110834477 Common gltS sodium/glutamate symport carrier protein ABO_1616 51 COG0786 GltS, Na+/glutamate symporter Amino acid transport and metabolism 110835092 Common aroB 3-dehydroquinate synthase ABO_2231 207 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 110835284 Common - hypothetical protein ABO_2423 4 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 110835334 Common czcC cation efflux system protein ABO_2473 5 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110833817 Common - phosphoglycerate mutase, putative ABO_0956 33 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 110833836 Nonpathogen - hypothetical protein ABO_0975 1 None None None 110835531 Common pilT type IV pili twitching motility protein PilT ABO_2670 217 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 110835564 Common msrA peptide methionine sulfoxide reductase ABO_2703 206 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 110833609 Common - bacterial DNA-binding protein ABO_0748 31 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 110833337 Common rlud pseudouridylate synthase ABO_0476 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 110835051 Common priB primosomal replication protein N ABO_2190 14 COG2965 PriB, Primosomal replication protein N DNA replication, recombination, and repair 110833289 Common - DNA-binding response regulator, LuxR family ABO_0428 140 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 110833297 Common - hydrolase, alpha/beta fold family ABO_0436 133 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110834964 Common - hypothetical protein ABO_2103 101 COG2835 COG2835, Uncharacterized conserved protein Function unknown 110833253 Common algX alginate biosynthesis protein AlgX ABO_0392 5 None None None 110835112 Common tatB Sec-independent protein translocase TatB ABO_2251 79 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 110834931 Common - hypothetical protein ABO_2070 4 None None None 110835581 Common ureB urease, beta subunit ABO_2720 96 COG0832 UreB, Urea amidohydrolase (urease) beta subunit Amino acid transport and metabolism 110833956 Common yhcX Hypothetical protein yhcX ABO_1095 177 COG0388 COG0388, Predicted amidohydrolase General function prediction only 110835150 Common - hypothetical protein ABO_2289 131 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 110834284 Common gor glutathione reductase ABO_1423 246 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 110835448 Common - transporter, LysE family ABO_2587 121 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 110833106 Common - cobalt/cadmium/zinc transporter, CDF family ABO_0245 144 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 110833045 Common fadB long-chain-fatty-acid-CoA ligase, putative ABO_0184 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110833278 Common secY Preprotein translocase SecY subunit ABO_0417 245 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 110833916 Common msbA ATP-binding cassette (ABC) LPS transporter,permease ABO_1055 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 110834859 Common inaA InaA protein ABO_1998 6 None None None 110833554 Nonpathogen - hypothetical protein ABO_0693 1 COG3170 FimV, Tfp pilus assembly protein FimV Cell motility and secretion / Intracellular trafficking and secretion 110835360 Common thiC thiamine biosynthesis protein ThiC ABO_2499 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 110833734 Common ccmD Heme exporter protein D ABO_0873 14 COG3114 CcmD, Heme exporter protein D Intracellular trafficking and secretion 110833922 Common rluC Ribosomal large subunit pseudouridine synthase C ABO_1061 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 110833236 Common rplA 50S ribosomal protein L1 ABO_0375 246 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 110833899 Common apbE thiamine biosynthesis lipoprotein ABO_1038 142 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 110835123 Common glnA glutamine synthetase, type I ABO_2262 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 110834323 Common trpF N-(5'-phosphoribosyl)anthranilate isomerase ABO_1462 184 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 110834446 Common - oxidoreductase ABO_1585 156 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110835462 Common - hypothetical protein ABO_2601 38 COG3079 COG3079, Uncharacterized protein conserved in bacteria Function unknown 110835471 Nonpathogen - hypothetical protein ABO_2610 1 None None None 110833454 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase ABO_0593 215 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 110834222 Common - amino acid transporter, putative ABO_1361 115 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 110834423 Common - hypothetical protein ABO_1562 45 COG2933 COG2933, Predicted SAM-dependent methyltransferase General function prediction only 110835131 Common - hypothetical protein ABO_2270 6 None None None 110835036 Common - transcriptional regulator, putative ABO_2175 176 COG1327 COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Transcription 110834049 Common cysI sulfite reductase (NADPH) ABO_1188 168 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 110833669 Common - choline/carnitine/betaine transporter family protein ABO_0808 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 110834469 Common - serine-pyruvate transaminase; SPT ABO_1608 119 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 110833934 Common - hypothetical protein ABO_1073 185 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 110833655 Common - hypothetical protein ABO_0794 129 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 110833264 Common rpsC 30S ribosomal protein S3 ABO_0403 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 110835318 Common greB transcription elongation factor GreB ABO_2457 197 COG0782 GreA, Transcription elongation factor Transcription 110834186 Common - Small-conductance mechanosensitive channel ABO_1325 195 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 110833947 Common nirB nitrite reductase [NAD(P)H] ABO_1086 196 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 110833021 Nonpathogen - hypothetical protein ABO_0160 3 None None None 110834371 Common - hypothetical protein ABO_1510 19 None None None 110834451 Common - hypothetical protein ABO_1590 16 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 110834609 Common hisC-2 histidinol-phosphate aminotransferase ABO_1748 236 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 110833485 Nonpathogen - hypothetical protein ABO_0624 2 None None None 110834490 Common recO DNA repair protein RecO ABO_1629 60 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 110835099 Common mrcA penicillin-binding protein ABO_2238 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 110835020 Common - hypothetical protein ABO_2159 53 COG4327 COG4327, Predicted membrane protein Function unknown 110834409 Common - hypothetical protein ABO_1548 28 COG1300 SpoIIM, Uncharacterized membrane protein Function unknown 110834816 Common mrdA penicillin-binding protein 2, putative ABO_1955 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 110833007 Common - transcriptional regulator, LysR family ABO_0146 185 COG0583 LysR, Transcriptional regulator Transcription 110833985 Common amtB1 Ammonium transporter MEP3. ABO_1124 201 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 110835331 Common czcD Cation efflux family protein ABO_2470 173 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 110834593 Nonpathogen - hypothetical protein ABO_1732 3 None None None 110833111 Common - ABC export system, outer membrane protein ABO_0250 122 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110834216 Common tnpB transposon protein B, putative ABO_1355 6 None None None 110834204 Common - hypothetical protein ABO_1343 29 COG2836 COG2836, Uncharacterized conserved protein Function unknown 110833343 Common ilvH acetolactate synthase 3 regulatory subunit ABO_0482 192 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 110833218 Common - hypothetical protein ABO_0357 96 COG1981 COG1981, Predicted membrane protein Function unknown 110835497 Common - hypothetical protein ABO_2636 69 COG2391 COG2391, Predicted transporter component General function prediction only 110834045 Common - hypothetical protein ABO_1184 48 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 110834974 Common - hypothetical protein ABO_2113 32 COG3124 COG3124, Uncharacterized protein conserved in bacteria Function unknown 110832870 Common glyQ glycyl-tRNA synthetase subunit alpha ABO_0009 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 110835254 Common - monooxygenase, flavin-binding family ABO_2393 69 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 110834666 Common - hypothetical protein ABO_1805 58 COG1432 COG1432, Uncharacterized conserved protein Function unknown 110833086 Nonpathogen - hypothetical protein ABO_0225 1 None None None 110833786 Common - sugar transferase, putative ABO_0925 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 110833186 Common tpiA triosephosphate isomerase ABO_0325 215 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 110834032 Common nlpD lipoprotein NlpD, putative ABO_1171 189 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 110834727 Common aapB ATP-binding protein of ABC-transporter ABO_1866 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 110834485 Common ruma RNA methyltransferase, TrmA family ABO_1624 202 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 110834367 Common - hypothetical protein ABO_1506 32 None None None 110834785 Common phoH1 PhoH family protein ABO_1924 198 COG1875 COG1875, Predicted ATPase related to phosphate starvation-inducible protein PhoH Signal transduction mechanisms 110833402 Common mgtE magnesium transporter ABO_0541 172 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 110835529 Common proC pyrroline-5-carboxylate reductase ABO_2668 215 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 110834558 Common pnb nitrobenzoate reductase, putative ABO_1697 61 COG0778 NfnB, Nitroreductase Energy production and conversion 110834464 Common - hypothetical protein ABO_1603 11 None None None 110833587 Common gloA lactoylglutathione lyase ABO_0726 131 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 110835550 Common - TRAP-type transports system extracellular solute binding protein ABO_2689 110 COG4663 FcbT1, TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 110833814 Common aroF-2 phospho-2-dehydro-3-deoxyheptonate aldolase ABO_0953 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 110833607 Common - hypothetical protein ABO_0746 7 None None None 110834576 Common - transcriptional regulator, AraC family ABO_1715 94 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110835607 Common - AcrB/AcrD/AcrF family protein ABO_2746 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 110835248 Common - hypothetical protein ABO_2387 15 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 110833523 Common - hypothetical protein ABO_0662 101 COG1733 COG1733, Predicted transcriptional regulators Transcription 110834510 Common prfA peptide chain release factor 1 ABO_1649 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 110833411 Common ptsN phosphotransferase system, nitrogen regulatory IIA protein ABO_0550 133 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 110834260 Common - hypothetical protein ABO_1399 63 COG3803 COG3803, Uncharacterized protein conserved in bacteria Function unknown 110835171 Nonpathogen - hypothetical protein ABO_2310 1 None None None 110834698 Common pheT Phenylalanyl-tRNA synthetase, beta subunit ABO_1837 241 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 110833380 Common ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase ABO_0519 192 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 110834174 Common gspF General secretion pathway protein F ABO_1313 148 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 110834913 Common cca tRNA cytidylyltransferase ABO_2052 192 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 110835438 Common metW SAM-dependent methyltransferases ABO_2577 60 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110834643 Common - siderophore biosynthesis protein, putative ABO_1782 32 COG2977 EntD, Phosphopantetheinyl transferase component of siderophore synthetase Secondary metabolites biosynthesis, transport, and catabolism 110833806 Common uvrB excinuclease ABC subunit B ABO_0945 228 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 110833220 Common argC N-acetyl-gamma-glutamyl-phosphate reductase ABO_0359 214 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 110833890 Common tesB acyl-CoA thioesterase II ABO_1029 77 COG1946 TesB, Acyl-CoA thioesterase Lipid metabolism 110834525 Common - CBS domain protein, putative ABO_1664 54 COG2524 COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains Transcription 110832937 Common fhuE outer membrane ferric siderophore receptor precursor ABO_0076 98 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 110834090 Common - hypothetical protein ABO_1229 8 None None None 110835501 Common dgt deoxyguanosinetriphosphate triphosphohydrolase-like protein ABO_2640 159 COG0232 Dgt, dGTP triphosphohydrolase Nucleotide transport and metabolism 110834868 Common dsbD thiol:disulfide interchange protein DsbD ABO_2007 141 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 110833718 Nonpathogen - hypothetical protein ABO_0857 5 None None None 110834151 Common ftsK cell division protein FtsK ABO_1290 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 110834922 Common - hypothetical protein ABO_2061 151 COG1610 COG1610, Uncharacterized conserved protein Function unknown 110833151 Common - hypothetical protein ABO_0290 38 COG3492 COG3492, Uncharacterized protein conserved in bacteria Function unknown 110834940 Common - hypothetical protein ABO_2079 50 COG1743 COG1743, Adenine-specific DNA methylase containing a Zn-ribbon DNA replication, recombination, and repair 110834600 Nonpathogen - hypothetical protein ABO_1739 1 COG3278 CcoN, Cbb3-type cytochrome oxidase, subunit 1 Posttranslational modification, protein turnover, chaperones 110834888 Common trpE anthranilate synthase, component I ABO_2027 222 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 110833685 Common - hypothetical protein ABO_0824 7 None None None 110833373 Common suhB myo-inositol-1(or 4)-monophosphatase ABO_0512 214 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 110834178 Common gspJ general secretion pathway protein GspJ precursor ABO_1317 33 COG4795 PulJ, Type II secretory pathway, component PulJ Intracellular trafficking and secretion 110834995 Common hisI phosphoribosyl-AMP cyclohydrolase ABO_2134 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 110833093 Common betT Choline-glycine betaine transporter ABO_0232 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 110833540 Nonpathogen - hypothetical protein ABO_0679 2 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 110834744 Common - hypothetical protein ABO_1883 57 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 110835454 Common gcvH glycine cleavage system H protein ABO_2593 187 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 110833223 Common yadR HesB/YadR/YfhF family protein ABO_0362 166 COG0316 IscA, Uncharacterized conserved protein Function unknown 110832910 Common - hypothetical protein ABO_0049 3 None None None 110835235 Common ccpR cytochrome-c peroxidase ABO_2374 94 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 110834140 Common moaE molybdenum cofactor biosynthesis protein E ABO_1279 154 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 110833387 Common phaB Enoyl-CoA hydratase/isomerase ABO_0526 178 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 110832919 Common - cytochrome b561, putative ABO_0058 45 COG3038 CybB, Cytochrome B561 Energy production and conversion 110834097 Common acsA acetyl-CoA synthetase ABO_1236 199 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 110835309 Nonpathogen - hypothetical protein ABO_2448 3 None None None 110833764 Common - hypothetical protein ABO_0903 87 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110833829 Common - hypothetical protein ABO_0968 31 COG3089 COG3089, Uncharacterized protein conserved in bacteria Function unknown 110834086 Common dnaQ DNA polymerase III, epsilon subunit ABO_1225 190 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 110834677 Common cls cardiolipin synthase ABO_1816 148 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 110833307 Common - transcriptional regulator, AraC family ABO_0446 76 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110834345 Common - hypothetical protein ABO_1484 30 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110834148 Common - arginyl-tRNA-protein transferase ABO_1287 85 COG2935 COG2935, Putative arginyl-tRNA:protein arginylyltransferase Posttranslational modification, protein turnover, chaperones 110834811 Common - hypothetical protein ABO_1950 4 COG3315 COG3315, O-Methyltransferase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 110834270 Common - alkylglycerone-phosphate synthase ABO_1409 177 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 110833843 Nonpathogen - hypothetical protein ABO_0982 1 None None None 110834649 Nonpathogen - none ABO_1788 1 None None None 110833329 Common - secretion protein, putative ABO_0468 3 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 110833434 Nonpathogen - hypothetical protein ABO_0573 1 None None None 110835165 Common - hypothetical protein ABO_2304 35 COG1392 COG1392, Phosphate transport regulator (distant homolog of PhoU) Inorganic ion transport and metabolism 110833835 Common - hypothetical protein ABO_0974 71 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 110833059 Common - transcriptional regulator, TetR family ABO_0198 88 COG1309 AcrR, Transcriptional regulator Transcription 110834850 Common pfkA 6-phosphofructokinase ABO_1989 153 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 110834841 Common amiE acylamide amidohydrolase ABO_1980 128 COG0388 COG0388, Predicted amidohydrolase General function prediction only 110834072 Common clpX ATP-dependent protease ATP-binding subunit ABO_1211 231 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 110833673 Common - CAIB/BAIF family protein ABO_0812 115 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 110834044 Common - aminotransferase AlaT ABO_1183 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 110833195 Common acsA acetyl-CoA synthetase ABO_0334 214 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 110834846 Common - ABC transporter, periplasmic substrate-binding protein ABO_1985 142 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 110832901 Common - hypothetical protein ABO_0040 13 None None None 110834826 Common dacB D-alanyl-D-alanine-carboxypeptidase ABO_1965 96 COG2027 DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) Cell envelope biogenesis, outer membrane 110834517 Nonpathogen - hypothetical protein ABO_1656 15 None None None 110834665 Common atfA2 acyltransferase ABO_1804 28 COG4908 COG4908, Uncharacterized protein containing a NRPS condensation (elongation) domain General function prediction only 110835403 Common - hypothetical protein ABO_2542 26 COG4254 COG4254, Uncharacterized protein conserved in bacteria Function unknown 110833211 Common pfkB carbohydrate kinase, PfkB family ABO_0350 161 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 110835416 Common metY O-acetylhomoserine sulfhydrylase ABO_2555 206 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 110834776 Common - hypothetical protein ABO_1915 24 COG4692 COG4692, Predicted neuraminidase (sialidase) Carbohydrate transport and metabolism 110833511 Common - hypothetical protein ABO_0650 13 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 110833242 Common rpsG 30S ribosomal protein S7 ABO_0381 243 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 110835224 Common slyD fkbp-type peptidyl-prolyl cis-trans isomerase slyd ABO_2363 136 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 110833801 Nonpathogen - hypothetical protein ABO_0940 9 None None None 110835340 Common - hypothetical protein ABO_2479 4 COG3111 COG3111, Uncharacterized conserved protein Function unknown 110833928 Common plsX fatty acid/phospholipid synthesis protein PlsX ABO_1067 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 110835161 Common waaF ADP-heptose LPS heptosyltransferase II ABO_2300 106 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 110833188 Common - hypothetical protein ABO_0327 171 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 110832986 Common fimD type 1 pili subunit FimD ABO_0125 34 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 110834327 Common asd-2 aspartate-semialdehyde dehydrogenase ABO_1466 197 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 110834866 Nonpathogen - hypothetical protein ABO_2005 4 None None None 110833031 Common - hypothetical protein ABO_0170 39 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110832952 Common - hypothetical protein ABO_0091 46 COG3326 COG3326, Predicted membrane protein Function unknown 110833350 Common - hypothetical protein ABO_0489 24 COG3205 COG3205, Predicted membrane protein Function unknown 110832997 Common aroE shikimate 5-dehydrogenase ABO_0136 220 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 110833973 Common - acyltransferase, putative ABO_1112 33 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 110835562 Common ushA 2',3'-cyclic-nucleotide 2'-phosphodiesterase ABO_2701 113 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 110833746 Common - adenylate cyclase ABO_0885 89 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 110835047 Common dadX alanine racemase, catabolic ABO_2186 198 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 110834280 Nonpathogen - hypothetical protein ABO_1419 1 None None None 110833254 Common algL poly(beta-D-mannuronate) lyase ABO_0393 4 None None None 110833711 Common - membrane protein ABO_0850 68 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 110835441 Common - coproporphyrinogen oxidase ABO_2580 205 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 110835291 Common ahpF Alkyl hydroperoxide reductase subunit F ABO_2430 248 COG3634 AhpF, Alkyl hydroperoxide reductase, large subunit Posttranslational modification, protein turnover, chaperones 110833740 Common - ABC transporter permease component ABO_0879 127 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 110834112 Common estC carboxylesterase ABO_1251 72 COG2272 PnbA, Carboxylesterase type B Lipid metabolism 110833328 Common - pilin biogenesis related protein ABO_0467 30 COG3419 PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 Cell motility and secretion / Intracellular trafficking and secretion 110834017 Common lpxB lipid A disaccharide synthase ABO_1156 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 110834655 Common pyrC dihydroorotase ABO_1794 96 COG0418 PyrC, Dihydroorotase Nucleotide transport and metabolism 110833206 Common dksA DksA ABO_0345 146 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 110834743 Common - LemA family protein ABO_1882 131 COG1704 LemA, Uncharacterized conserved protein Function unknown 110833553 Common - hypothetical protein ABO_0692 34 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 110833867 Common - hypothetical protein ABO_1006 21 None None None 110834545 Common pgp Phosphoglycolate phosphatase PGP ABO_1684 87 COG0546 Gph, Predicted phosphatases General function prediction only 110833574 Common rstB sensor histidine kinase rstB ABO_0713 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110833075 Common radC DNA repair protein RadC homolog ABO_0214 179 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 110834536 Common - hypothetical protein ABO_1675 2 None None None 110834021 Common mesJ cell cycle protein MesJ, putative ABO_1160 211 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 110835215 Common - hypothetical protein ABO_2354 15 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110833087 Common - hypothetical protein ABO_0226 2 COG4655 COG4655, Predicted membrane protein Function unknown 110835569 Common alkG rubredoxin ABO_2708 116 COG1773 COG1773, Rubredoxin Energy production and conversion 110833569 Common - oxidoreductase ABO_0708 222 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110834476 Common - hypothetical protein ABO_1615 18 COG3134 COG3134, Predicted outer membrane lipoprotein Function unknown 110833389 Common gatA glutamyl-tRNA(Gln) amidotransferase, A subunit ABO_0528 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 110833994 Common - Dyp-type peroxidase family protein ABO_1133 50 COG2837 COG2837, Predicted iron-dependent peroxidase Inorganic ion transport and metabolism 110834271 Common - acyltransferase, putative ABO_1410 22 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 110833241 Common rpsL 30S ribosomal protein S12 ABO_0380 244 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 110835080 Common bioF 8-amino-7-oxononanoate synthase ABO_2219 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 110833144 Common - hypothetical protein ABO_0283 88 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 110834505 Common - hypothetical protein ABO_1644 95 COG0354 COG0354, Predicted aminomethyltransferase related to GcvT General function prediction only 110833330 Nonpathogen - hypothetical protein ABO_0469 2 COG4970 FimT, Tfp pilus assembly protein FimT Cell motility and secretion / Intracellular trafficking and secretion 110834736 Nonpathogen - hypothetical protein ABO_1875 1 None None None 110834294 Common prpB 2-methylisocitrate lyase ABO_1433 136 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 110834895 Common cyoD cytochrome o ubiquinol oxidase, protein CyoD ABO_2034 61 COG3125 CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 Energy production and conversion 110834582 Common - phosphate ABC transporter periplasmic-binding protein ABO_1721 40 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 110835541 Common arsR-1 arsenic resistance transcriptional regulator ABO_2680 107 COG0640 ArsR, Predicted transcriptional regulators Transcription 110833793 Common ugd1 UDP-glucose 6-dehydrogenase ABO_0932 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 110833939 Common - hypothetical protein ABO_1078 123 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 110834012 Common - outer membrane protein, bacterial surface antigen family protein ABO_1151 158 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 110834634 Common recR recombination protein RecR ABO_1773 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 110835425 Common - hypothetical protein ABO_2564 162 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 110834511 Nonpathogen - hypothetical protein ABO_1650 3 None None None 110834956 Common yojI multidrug transporter membrane component/ATP-binding component ABO_2095 249 COG4615 PvdE, ABC-type siderophore export system, fused ATPase and permease components Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism 110835184 Common algR alginate biosynthesis regulator ABO_2323 220 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 110833372 Common gabD succinate-semialdehyde dehydrogenase [NAD(P)] ABO_0511 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 110834684 Common - hypothetical protein ABO_1823 25 None None None 110832908 Nonpathogen - hypothetical protein ABO_0047 1 None None None 110834308 Common - enolase/hydrolase ABO_1447 31 COG4229 COG4229, Predicted enolase-phosphatase Energy production and conversion 110834433 Common - hypothetical protein ABO_1572 20 COG3249 COG3249, Uncharacterized protein conserved in bacteria Function unknown 110834209 Common - cytochrome c oxidase, cbb3-type, subunit III, putative ABO_1348 77 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 110835177 Common - paraquat-inducible protein A ABO_2316 53 COG2995 PqiA, Uncharacterized paraquat-inducible protein A Function unknown 110832893 Common ygiX transcriptional regulatory protein qseb ABO_0031 215 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110835186 Common argH argininosuccinate lyase ABO_2325 234 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 110833855 Common - cyclic nucleotide-binding domain protein ABO_0994 77 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110835206 Common lgt Prolipoprotein diacylglyceryl transferase ABO_2345 209 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 110834184 Common - hypothetical protein ABO_1323 37 COG5473 COG5473, Predicted integral membrane protein Function unknown 110833339 Nonpathogen - hypothetical protein ABO_0478 1 None None None 110834127 Common ydaO hypothetical protein ABO_1266 165 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 110835194 Common - hypothetical protein ABO_2333 37 COG3159 COG3159, Uncharacterized protein conserved in bacteria Function unknown 110833185 Common glmM phosphoglucosamine mutase ABO_0324 241 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 110834478 Common nth DNA-(apurinic or apyrimidinic site) lyase ABO_1617 239 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 110833080 Common - type II secretion system protein, probable ABO_0219 139 COG4964 CpaC, Flp pilus assembly protein, secretin CpaC Intracellular trafficking and secretion 110833906 Nonpathogen - hypothetical protein ABO_1045 1 COG3233 COG3233, Predicted deacetylase General function prediction only 110833848 Common ech2 enoyl-CoA hydratase ABO_0987 180 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 110833474 Common tapC type IV pilus assembly protein TapC ABO_0613 142 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 110834193 Common - tail-specific protease prc, putative ABO_1332 182 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 110832983 Common alkB2 alkane-1-monooxygenase ABO_0122 26 COG3239 DesA, Fatty acid desaturase Lipid metabolism 110834129 Common - putative methyltransferase ABO_1269 36 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 110835374 Common - amino acid ABC transporter, ATP-binding protein ABO_2513 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 110833638 Nonpathogen - hypothetical protein ABO_0777 2 COG3317 NlpB, Uncharacterized lipoprotein Cell envelope biogenesis, outer membrane 110833633 Common - hypothetical protein ABO_0772 13 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 110835455 Common gcvT glycine cleavage system T protein ABO_2594 180 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 110834606 Common rpsA 30S ribosomal protein S1 ABO_1745 217 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 110834408 Common - hypothetical protein ABO_1547 31 COG1714 COG1714, Predicted membrane protein/domain Function unknown 110834434 Common purM phosphoribosylformylglycinamidine cyclo-ligase ABO_1573 232 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 110835394 Common - acyl-CoA dehydrogenase, putative ABO_2533 153 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110835034 Common ribE riboflavin synthase subunit alpha ABO_2173 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 110835018 Common - CBS domain protein ABO_2157 71 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 110833942 Common - aminotransferase, putative ABO_1081 230 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 110832881 Common mmsA methylmalonate semialdehyde dehydrogenase (acylating) ABO_0020 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 110835369 Common - transcriptional regulator, GntR family ABO_2508 133 COG1802 GntR, Transcriptional regulators Transcription 110834100 Common - Acetyl-CoA carboxylase, carboxyltransferase , putative ABO_1239 152 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 110834765 Common - hypothetical protein ABO_1904 26 None None None 110834330 Common leuD 3-isopropylmalate dehydratase, small subunit ABO_1469 209 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 110834764 Common - hypothetical protein ABO_1903 47 COG3346 COG3346, Uncharacterized conserved protein Function unknown 110835285 Common - hypothetical protein ABO_2424 110 COG0397 COG0397, Uncharacterized conserved protein Function unknown 110835093 Common aroK shikimate kinase ABO_2232 200 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 110834234 Common - hypothetical protein ABO_1373 79 COG1742 COG1742, Uncharacterized conserved protein Function unknown 110833706 Common oadB oxaloacetate decarboxylase, beta subunit ABO_0845 56 COG1883 OadB, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit Energy production and conversion 110833795 Common galU UTP-glucose-1-phosphate uridylyltransferase ABO_0934 229 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 110835474 Common pgk phosphoglycerate kinase ABO_2613 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 110834559 Common - hypothetical protein ABO_1698 21 COG4333 COG4333, Uncharacterized protein conserved in bacteria Function unknown 110835300 Common - hypothetical protein ABO_2439 29 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 110835381 Common - sensor histidin kinase ABO_2520 222 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 110833781 Common - glycosyl transferase, group 1 family protein ABO_0920 229 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110835555 Common - hypothetical protein ABO_2694 142 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 110835273 Common - hypothetical protein ABO_2412 38 COG4067 COG4067, Uncharacterized protein conserved in archaea Posttranslational modification, protein turnover, chaperones 110835486 Common - hypothetical protein ABO_2625 14 None None None 110833122 Common - hypothetical protein ABO_0261 27 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 110834037 Common - hypothetical protein ABO_1176 54 COG0824 FcbC, Predicted thioesterase General function prediction only 110833955 Nonpathogen - hypothetical protein ABO_1094 1 None None None 110833280 Common rpsM 30S ribosomal protein S13 ABO_0419 240 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 110834592 Common acsA acetyl-CoA synthetase ABO_1731 219 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 110833964 Common acdS short-chain acyl CoA dehydrogenase ABO_1103 235 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110834066 Common ppiA peptidyl-prolyl isomerase ABO_1205 199 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 110834158 Nonpathogen - hypothetical protein ABO_1297 1 None None None 110833360 Common - hypothetical protein ABO_0499 35 COG1714 COG1714, Predicted membrane protein/domain Function unknown 110833068 Common pyrE orotate phosphoribosyltransferase ABO_0207 148 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 110835050 Common rpsR 30S ribosomal protein S18 ABO_2189 215 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 110835483 Nonpathogen - hypothetical protein ABO_2622 2 None None None 110834963 Common - acyl-CoA dehydrogenase, putative ABO_2102 147 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110835074 Common psd phosphatidylserine decarboxylase ABO_2213 97 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 110833877 Common - transcriptional regulator, TetR family ABO_1016 88 COG1309 AcrR, Transcriptional regulator Transcription 110832926 Common - hypothetical protein ABO_0065 6 None None None 110834384 Common - hydrolase, alpha/beta fold family, putative ABO_1523 87 COG2267 PldB, Lysophospholipase Lipid metabolism 110834415 Common - MATE efflux family protein, putative ABO_1554 180 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 110832968 Common pilI type IV pili signal transduction protein PilI ABO_0107 77 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 110833105 Common - transcriptional regulator, MerR family ABO_0244 138 COG0789 SoxR, Predicted transcriptional regulators Transcription 110835490 Common - Ca2+/Na+antiporter protein ABO_2629 125 COG0530 ECM27, Ca2+/Na+ antiporter Inorganic ion transport and metabolism 110833619 Common tolB tolB protein ABO_0758 154 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 110835021 Nonpathogen - hypothetical protein ABO_2160 1 None None None 110833369 Common - D-isomer specific 2-hydroxyacid dehydrogenase family ABO_0508 226 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 110834122 Common - hypothetical protein ABO_1261 8 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 110835001 Nonpathogen - hypothetical protein ABO_2140 3 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 110833871 Nonpathogen - hypothetical protein ABO_1010 15 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110833699 Common ccmH cytochrome C biogenesis protein ABO_0838 91 COG3088 CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes Posttranslational modification, protein turnover, chaperones 110834056 Common lon-1 ATP-dependent protease La ABO_1195 205 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 110835358 Common - hypothetical protein ABO_2497 26 COG3151 COG3151, Uncharacterized protein conserved in bacteria Function unknown 110834722 Common - hypothetical protein ABO_1861 71 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 110833013 Nonpathogen - hypothetical protein ABO_0152 1 None None None 110832865 Common gyrB DNA gyrase, subunit B ABO_0004 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 110834705 Common - hypothetical protein ABO_1844 36 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 110833453 Common ftsI penicillin-binding protein 3 ABO_0592 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 110833165 Nonpathogen - hypothetical protein ABO_0304 1 None None None 110834003 Common map methionine aminopeptidase ABO_1142 246 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 110834353 Common sucD succinyl-CoA synthetase, alpha subunit ABO_1492 215 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 110835593 Common atpB F0F1 ATP synthase subunit A ABO_2732 198 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 110833500 Common - hypothetical protein ABO_0639 4 None None None 110835103 Common argS arginyl-tRNA synthetase ABO_2242 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110833627 Common phrB DNA photolyase ABO_0766 134 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair