Cytophaga hutchinsonii ATCC 33406, complete genome NC_008255 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 110639627 Common - RNA methylase family protein CHU_3255 128 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 110639620 Common pheS phenylalanyl-tRNA synthetase subunit alpha CHU_3247 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 110638773 Nonpathogen - hypothetical protein CHU_2383 1 None None None 110639864 Common oppA oligopeptide ABC transporter, solute-binding protein CHU_3498 200 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 110637300 Common - acyltransferase family protein CHU_0886 57 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 110639245 Common - hypothetical protein CHU_2864 10 None None None 110639346 Common - conserved hypothetical protein; possible metalloprotease CHU_2972 12 None None None 110637931 Nonpathogen - hypothetical protein CHU_1527 1 None None None 110638240 Common - hypothetical protein CHU_1840 2 None None None 110638455 Common - hypothetical protein CHU_2059 4 COG3239 DesA, Fatty acid desaturase Lipid metabolism 110638860 Common sdhA succinate dehydrogenase flavoprotein subunit CHU_2473 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 110638587 Nonpathogen - hypothetical protein CHU_2191 1 None None None 110639825 Common ybiT ABC transporter, ATP-binding protein CHU_3458 248 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 110636902 Nonpathogen - hypothetical protein CHU_0480 1 None None None 110638131 Common yobV transcriptional regulator, DeoR family CHU_1731 106 COG2378 COG2378, Predicted transcriptional regulator Transcription 110637353 Common acrD acriflavin resistance protein D CHU_0941 179 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 110638195 Nonpathogen - hypothetical protein CHU_1795 1 None None None 110639584 Common - hypothetical protein CHU_3211 4 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 110636809 Common - ABC transporter, permease component CHU_0386 85 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 110638750 Nonpathogen - hypothetical protein CHU_2359 1 None None None 110638855 Common folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase (7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase) CHU_2468 199 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 110638466 Nonpathogen - hypothetical protein CHU_2070 2 None None None 110639154 Common wcaE b-glycosyltransferase, glycosyltransferase family 2 protein CHU_2772 117 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110638348 Common - hypothetical protein CHU_1949 39 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 110636484 Common nlpC lipoprotein CHU_0057 139 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 110639530 Common rplV 50S ribosomal protein L22 CHU_3157 197 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 110638931 Common kptA RNA 2'-phosphotransferase CHU_2545 43 COG1859 KptA, RNA:NAD 2'-phosphotransferase Translation, ribosomal structure and biogenesis 110637025 Common lgtF b-glycosyltransferase, glycosyltransferase family 2 protein CHU_0605 135 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110636877 Common - pectate lyase-related protein CHU_0455 27 None None None 110639189 Common - membrane fusion protein; possible cation efflux system protein CHU_2808 180 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110636800 Nonpathogen - hypothetical protein CHU_0377 1 None None None 110637491 Common - hypothetical protein CHU_1081 15 COG1615 COG1615, Uncharacterized conserved protein Function unknown 110639834 Common - hypothetical protein CHU_3467 3 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 110639815 Nonpathogen - hypothetical protein CHU_3448 2 None None None 110640101 Common yiaD possible outer membrane protein CHU_3735 138 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110638295 Common fabH 3-oxoacyl-[acyl-carrier-protein] synthase III CHU_1896 206 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 110637659 Nonpathogen - conserved hypothetical protein; possible urease accessory protein CHU_1254 11 None None None 110638728 Common hisI histidine biosynthesis bifunctional protein: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphatase CHU_2337 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 110638017 Common gyrB DNA topoisomerase IV subunit B CHU_1614 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 110639738 Common - hypothetical protein CHU_3369 12 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 110637039 Common - hypothetical protein CHU_0619 118 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 110636811 Common - hypothetical protein CHU_0388 12 None None None 110637441 Common - hypothetical protein CHU_1031 4 None None None 110636926 Nonpathogen - hypothetical protein CHU_0505 1 None None None 110637124 Common yjjG probable haloacid dehalogenase-like hydrolase CHU_0704 113 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 110638358 Nonpathogen - hypothetical protein CHU_1959 1 None None None 110637967 Common purB adenylosuccinate lyase CHU_1563 233 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 110638764 Common yopH protein-tyrosine phosphatase CHU_2373 36 COG2453 CDC14, Predicted protein-tyrosine phosphatase Signal transduction mechanisms 110640131 Common - conserved hypothetical protein; possible protease CHU_3765 98 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 110637020 Common - hypothetical protein CHU_0600 7 None None None 110637003 Nonpathogen - hypothetical protein CHU_0583 1 None None None 110639292 Common folA dihydrofolate reductase CHU_2917 76 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 110639630 Common suhB inositol-1-monophosphatase CHU_3258 213 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 110636892 Common nagZ b-N-acetylglucosaminidase, glycoside hydrolase family 3 protein CHU_0470 179 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 110638215 Common sufS selenocysteine lyase CHU_1815 238 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 110637591 Common - hypothetical protein CHU_1183 3 None None None 110637145 Nonpathogen - hypothetical protein CHU_0725 1 None None None 110639335 Common - DNA resolvase CHU_2960 92 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 110637014 Common - siderophore biosynthesis protein CHU_0594 50 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 110639170 Common - hypothetical protein CHU_2788 164 COG1576 COG1576, Uncharacterized conserved protein Function unknown 110638233 Nonpathogen - hypothetical protein CHU_1833 1 None None None 110639731 Common kgd alpha-ketoglutarate decarboxylase CHU_3362 150 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 110637326 Common ycdQ b-glycosyltransferase, glycosyltransferase family 2 protein CHU_0912 65 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110636456 Common sprA gliding motility-related protein CHU_0029 6 None None None 110638622 Common - hypothetical protein CHU_2226 7 None None None 110638136 Common - conserved hypothetical protein; possible sulfatase CHU_1736 61 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 110636632 Common ilvA threonine dehydratase CHU_0207 219 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 110639710 Nonpathogen - hypothetical protein CHU_3341 2 None None None 110637314 Common - dTDP-glucose 4,6-dehydratase CHU_0900 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110639551 Common - hypothetical protein CHU_3178 8 None None None 110639500 Common - conserved hypothetical protein; possible transport protein CHU_3127 14 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 110639044 Common tolC outer membrane efflux protein CHU_2659 116 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110639174 Common - peptidoglycan-binding lytic transglycosylase-related protein, glycoside hydrolase family 23 protein CHU_2792 134 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 110636985 Common bcp bacterioferritin comigratory protein CHU_0565 217 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110636866 Common - hypothetical protein CHU_0444 11 None None None 110637866 Common - Tn5520-like integrase (transfer factor) CHU_1462 49 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 110637988 Common - outer membrane protein, OmpA family CHU_1585 164 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110637809 Nonpathogen - hypothetical protein CHU_1405 1 None None None 110638221 Common miaB 2-methylthioadenine synthetase CHU_1821 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 110638801 Common - hypothetical protein CHU_2412 43 COG2315 MmcQ, Uncharacterized protein conserved in bacteria Function unknown 110636840 Nonpathogen - hypothetical protein CHU_0417 1 None None None 110637905 Common cusB possible component of copper transport system CHU_1501 160 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110637223 Common malZ a-glucosidase, glycoside hydrolase family 31 protein CHU_0803 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 110638381 Common kdpA potassium-transporting ATPase subunit A CHU_1982 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 110637452 Common - sulfate transporter family protein CHU_1042 157 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 110637522 Nonpathogen - hypothetical protein CHU_1114 1 None None None 110637530 Nonpathogen - hypothetical protein CHU_1122 1 None None None 110639746 Nonpathogen - hypothetical protein CHU_3377 1 None None None 110640124 Nonpathogen - hypothetical protein CHU_3758 1 None None None 110638060 Common romA outer membrane protein CHU_1659 101 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 110638505 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_2109 169 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110636936 Common - conserved hypothetical protein; leucine-rich repeat (LRR) protein CHU_0515 33 None None None 110638266 Nonpathogen - hypothetical protein CHU_1867 1 None None None 110638245 Common - putative ABC transporter ATP-binding protein CHU_1845 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 110639659 Nonpathogen - hypothetical protein CHU_3287 1 None None None 110639539 Common rpsL 30S ribosomal protein S12 CHU_3166 246 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 110639357 Nonpathogen - hypothetical protein CHU_2983 1 None None None 110636546 Common rplS 50S ribosomal protein L19 CHU_0120 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 110639200 Nonpathogen - hypothetical protein CHU_2819 1 None None None 110639749 Common - kynurenine 3-monooxygenase CHU_3380 78 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 110638553 Nonpathogen - hypothetical protein CHU_2157 1 None None None 110636772 Common - hypothetical protein CHU_0349 4 COG2353 COG2353, Uncharacterized conserved protein Function unknown 110637773 Common dedA possible integral membrane protein CHU_1368 144 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 110636500 Common thrA bifunctional protein: aspartokinase I; homoserine dehydrogenase CHU_0073 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 110639983 Common - transposase CHU_3617 9 None None None 110636639 Common arcB aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA CHU_0214 220 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110638380 Common atoC two-component response regulator, sigma-54 related CHU_1981 222 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110639606 Common - conserved hypothetical protein with multiple WD40-like repeats CHU_3233 13 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 110640158 Nonpathogen - hypothetical protein CHU_3793 2 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 110637394 Nonpathogen - hypothetical protein CHU_0984 1 None None None 110637241 Common - conserved hypothetical protein; LRR-related protein CHU_0822 23 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 110640143 Common - hypothetical protein CHU_3778 2 COG3093 VapI, Plasmid maintenance system antidote protein General function prediction only 110636924 Nonpathogen - hypothetical protein CHU_0502 1 None None None 110637925 Common - hypothetical protein CHU_1521 2 None None None 110638920 Common gloA lactoylglutathione lyase CHU_2533 49 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 110636952 Common - hypothetical protein CHU_0532 57 COG3228 COG3228, Uncharacterized protein conserved in bacteria Function unknown 110638303 Common - hypothetical protein CHU_1904 5 None None None 110637134 Nonpathogen - hypothetical protein CHU_0714 1 None None None 110637579 Nonpathogen - hypothetical protein CHU_1171 1 None None None 110637750 Common glgB candidate glycogen branching enzyme, glycoside hydrolase family 13 protein CHU_1345 154 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 110637855 Nonpathogen - hypothetical protein CHU_1451 1 None None None 110638122 Nonpathogen - hypothetical protein CHU_1722 1 None None None 110636586 Common cusA possible copper transport protein CHU_0161 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 110636460 Nonpathogen - hypothetical protein CHU_0033 2 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 110638129 Common - hypothetical protein CHU_1729 36 COG4430 COG4430, Uncharacterized protein conserved in bacteria Function unknown 110640192 Common bcd bytyryl-CoA dehydrogenase (short-chain-acyl-CoA dehydrogenase) CHU_3827 167 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110637059 Nonpathogen - hypothetical protein CHU_0639 1 None None None 110636736 Common fecA iron(III) dicitrate transport protein, outer membrane receptor CHU_0312 73 COG4772 FecA, Outer membrane receptor for Fe3+-dicitrate Inorganic ion transport and metabolism 110637836 Common - probable exopolyphosphatase CHU_1432 141 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 110636703 Common ydjH probable carbohydrate kinase, PfkB family CHU_0279 116 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 110638048 Nonpathogen - hypothetical protein CHU_1646 1 None None None 110639345 Common phoH phosphate starvation-inducible protein CHU_2971 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 110638815 Common - hypothetical protein CHU_2426 14 COG4679 COG4679, Phage-related protein Function unknown 110636490 Common - a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0063 30 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110639563 Common - hypothetical protein CHU_3190 6 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 110637562 Common hat histone acetyltransferase CHU_1154 10 COG0456 RimI, Acetyltransferases General function prediction only 110638387 Common atoS sensor protein for response regulator AtoC CHU_1988 222 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 110638647 Common - hypothetical protein CHU_2251 52 COG3228 COG3228, Uncharacterized protein conserved in bacteria Function unknown 110636473 Nonpathogen munIC regulatory protein; possible transcriptional regulator CHU_0046 1 COG1476 COG1476, Predicted transcriptional regulators Transcription 110639574 Nonpathogen - hypothetical protein CHU_3201 1 None None None 110637827 Nonpathogen - hypothetical protein CHU_1423 1 None None None 110636729 Nonpathogen - hypothetical protein CHU_0305 1 None None None 110637334 Nonpathogen - hypothetical protein CHU_0922 1 None None None 110638635 Common - hypothetical protein CHU_2239 13 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 110637837 Common metH methionine synthase I, homocysteine S-methyltransferase CHU_1433 164 COG0646 MetH, Methionine synthase I (cobalamin-dependent), methyltransferase domain Amino acid transport and metabolism 110639788 Common - endonuclease/exonuclease/phosphatase family protein CHU_3419 8 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 110637346 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein CHU_0934 239 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 110639007 Nonpathogen - hypothetical protein CHU_2622 4 COG3668 ParE, Plasmid stabilization system protein General function prediction only 110639352 Common bioF 8-amino-7-oxononanoate synthase CHU_2978 190 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 110638434 Common crtZ beta-carotene hydroxylase CHU_2038 14 None None None 110639991 Common - hypothetical protein CHU_3625 10 None None None 110637890 Nonpathogen - hypothetical protein CHU_1486 1 None None None 110637754 Common dnaB replicative DNA helicase CHU_1349 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 110638775 Nonpathogen - hypothetical protein CHU_2385 1 None None None 110637384 Common - conserved hypothetical protein; possible sufE protein CHU_0974 91 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 110640031 Common fkpA FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) CHU_3665 125 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 110640021 Common - hypothetical protein CHU_3655 5 None None None 110638492 Common - pirin-related protein CHU_2096 144 COG1741 COG1741, Pirin-related protein General function prediction only 110639160 Common - hypothetical protein CHU_2778 2 None None None 110636562 Common metX homoserine O-acetyltransferase CHU_0136 131 COG2021 MET2, Homoserine acetyltransferase Amino acid transport and metabolism 110637057 Common cysC adenylylsulfate kinase (adenosine-5'phosphosulfate kinase) CHU_0637 143 COG0529 CysC, Adenylylsulfate kinase and related kinases Inorganic ion transport and metabolism 110639389 Common coaBC DNA/pantothenate metabolism flavoprotein CHU_3015 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 110639480 Common vdlC short-chain alcohol-related dehydrogenase CHU_3107 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110638417 Common exbB biopolymer transport protein CHU_2018 154 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 110638516 Common - hypothetical protein CHU_2120 5 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 110637421 Common - hypothetical protein CHU_1011 2 None None None 110637550 Common - hypothetical protein CHU_1142 4 None None None 110636556 Common ammA N-acyl-L-amino acid amidohydrolase CHU_0130 173 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 110640113 Nonpathogen - hypothetical protein CHU_3747 1 None None None 110639009 Common murI glutamate racemase CHU_2624 189 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 110637416 Common rhlE possible ATP-dependent RNA helicase CHU_1006 238 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110637471 Common - possible arsenate reductase CHU_1061 5 None None None 110636722 Common - sugar phosphate isomerase, KpsF/GutQ family CHU_0298 157 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 110637275 Common - acetyltransferase with hexapeptide repeat CHU_0859 150 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 110638391 Common tktA transketolase CHU_1992 174 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 110639374 Common wecE TDP-4-oxo-6-deoxy-D-glucose transaminase CHU_3000 193 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 110639728 Nonpathogen - hypothetical protein CHU_3359 1 None None None 110639089 Common - SAM-dependent methyltransferase CHU_2705 33 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 110638745 Common - hypothetical protein CHU_2354 31 COG4307 COG4307, Uncharacterized protein conserved in bacteria Function unknown 110639772 Common pdxJ pyridoxal phosphate biosynthetic protein PdxJ CHU_3403 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 110637246 Common - possible peptidyl-arginyl deiminase CHU_0827 87 COG2957 COG2957, Peptidylarginine deiminase and related enzymes Amino acid transport and metabolism 110637510 Common - alpha-tubulin suppressor CHU_1101 45 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 110640195 Nonpathogen - hypothetical protein CHU_3830 1 None None None 110636942 Common - hypothetical protein CHU_0522 8 None None None 110638897 Common - hypothetical protein CHU_2510 15 None None None 110639075 Common plsC 1-acylglycerol-3-phosphate O-acyltransferase (1-acyl-sn-glycerol-3-phosphate acyltransferase) CHU_2690 211 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 110639907 Common cusS sensor kinase of copper sensing two-component system CHU_3541 221 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 110639681 Common purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase CHU_3309 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 110637769 Common dacB D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) CHU_1364 108 COG2027 DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) Cell envelope biogenesis, outer membrane 110637761 Common narL two component response regulator CHU_1356 6 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110638544 Nonpathogen - candidate polysaccharide lyase, polysaccharide lyase family 14 protein CHU_2148 7 None None None 110636474 Nonpathogen - hypothetical protein CHU_0047 1 None None None 110639323 Common - hypothetical protein CHU_2948 6 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 110637885 Nonpathogen - hypothetical protein CHU_1481 1 None None None 110638677 Common - conserved hypothetical protein (possible transcriptional regulator) CHU_2283 18 COG3708 COG3708, Uncharacterized protein conserved in bacteria Function unknown 110639900 Common - two-component system response regulator CHU_3534 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110636519 Nonpathogen - hypothetical protein CHU_0092 1 None None None 110636975 Common - hypothetical protein CHU_0555 4 None None None 110639266 Common - conserved hypothetical protein, possible O-antigen ligase-related CHU_2886 20 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 110638019 Common fecI probable RNA polymerase sigma factor CHU_1616 145 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110638286 Common - beta-lactamase class D CHU_1887 38 COG2602 COG2602, Beta-lactamase class D Defense mechanisms 110636469 Common - possible endonuclease CHU_0042 18 COG1787 COG1787, Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes Defense mechanisms 110636887 Common - DNA polymerase IV, family X CHU_0081 78 COG1387 HIS2, Histidinol phosphatase and related hydrolases of the PHP family Amino acid transport and metabolism / General function prediction only 110639781 Common yaeT outer membrane protein; probable bacterial surface antigen CHU_3412 151 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 110639191 Common - hypothetical protein CHU_2810 33 COG4339 COG4339, Uncharacterized protein conserved in bacteria Function unknown 110638978 Common rpsR 30S ribosomal protein S18 CHU_2592 215 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 110639429 Common queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (queuosine biosynthesis protein) CHU_3055 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 110636530 Common - two-component response regulator CHU_0104 139 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 110638029 Common pdxA pyridoxal phosphate biosynthesis protein CHU_1627 159 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 110638725 Common - hypothetical protein CHU_2334 26 COG3014 COG3014, Uncharacterized protein conserved in bacteria Function unknown 110637077 Common galK galactokinase CHU_0657 87 COG0153 GalK, Galactokinase Carbohydrate transport and metabolism 110640164 Common ada methylated-DNA--[protein]-cysteine S-methyltransferase CHU_3799 216 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 110636960 Common - hypothetical protein CHU_0540 63 COG0640 ArsR, Predicted transcriptional regulators Transcription 110639421 Common cpxR two-component response regulator CHU_3047 34 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 110639105 Nonpathogen - hypothetical protein CHU_2722 1 None None None 110637375 Nonpathogen - hypothetical protein CHU_0965 1 None None None 110639662 Common trpE anthranilate synthase component I CHU_3290 221 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 110638327 Common pcm L-isoaspartyl protein carboxyl methyltransferase (protein-L-isoaspartate(D-aspartate) O-methyltransferase) CHU_1928 155 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 110638059 Common - DEAD box-related helicase (ATP-dependent RNA helicase) CHU_1658 234 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110639721 Common hsdS type I site-specific deoxyribonuclease S subunit CHU_3352 64 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 110638656 Nonpathogen - hypothetical protein CHU_2260 1 None None None 110640116 Nonpathogen - hypothetical protein CHU_3750 3 None None None 110639713 Common - hypothetical protein CHU_3344 4 None None None 110639082 Common - orotidine 5' phosphate decarboxylase CHU_2698 69 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 110639258 Nonpathogen - hypothetical protein CHU_2878 1 None None None 110638158 Common entC isochorismate synthase CHU_1758 178 COG1169 MenF, Isochorismate synthase Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110639519 Common rplR 50S ribosomal protein L18 CHU_3146 215 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 110640056 Nonpathogen - hypothetical protein CHU_3690 1 None None None 110637992 Nonpathogen - hypothetical protein CHU_1589 1 None None None 110639293 Common - hypothetical protein CHU_2918 13 None None None 110640033 Common - hypothetical protein CHU_3667 24 COG4487 COG4487, Uncharacterized protein conserved in bacteria Function unknown 110640088 Common recX regulatory protein RecX CHU_3722 35 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 110638041 Common gyrA DNA topoisomerase IV subunit A CHU_1639 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 110637561 Common - DNA repair protein CHU_1153 177 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 110638798 Common amyA cytoplasmic alpha-amylase CHU_2409 72 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 110638723 Nonpathogen - hypothetical protein CHU_2332 1 None None None 110640083 Common recF DNA replication and repair protein CHU_3717 164 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 110640201 Common glgA glycogen synthase-related protein CHU_3836 116 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 110637960 Common - DNA helicase CHU_1556 101 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 110636785 Common zraR two-component response regulator for zraP CHU_0362 226 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110637629 Common - outer membrane protein CHU_1223 42 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 110638703 Common mta transcriptional regulator, MerR family CHU_2309 88 COG0789 SoxR, Predicted transcriptional regulators Transcription 110636804 Nonpathogen - hypothetical protein CHU_0381 1 None None None 110638974 Common - SAM-dependent methyltransferase; O-methyltransferase CHU_2588 10 COG4122 COG4122, Predicted O-methyltransferase General function prediction only 110639368 Common mltD peptidoglycan-binding protein with multiple lysin domains CHU_2994 54 COG3858 COG3858, Predicted glycosyl hydrolase General function prediction only 110636713 Common - membrane protein CHU_0289 22 COG3503 COG3503, Predicted membrane protein Function unknown 110639489 Common yadQ chloride channel protein CHU_3116 140 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 110637434 Common yqiK possible membrane protein CHU_1024 55 COG2319 COG2319, FOG: WD40 repeat General function prediction only 110638077 Nonpathogen - hypothetical protein CHU_1676 1 None None None 110638979 Common rplI 50S ribosomal protein L9 CHU_2593 216 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 110639783 Common ompH outer membrane protein, ompH family CHU_3414 11 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 110640016 Common - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) CHU_3650 135 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 110637818 Common ppk polyphosphate kinase CHU_1414 161 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 110637941 Common - hypothetical protein CHU_1537 70 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 110638989 Common - CHU large protein; mannosidase-related CHU_2603 23 COG3291 COG3291, FOG: PKD repeat General function prediction only 110638254 Nonpathogen - hypothetical protein CHU_1855 5 None None None 110636911 Common rpmE 50S ribosomal protein L31 CHU_0489 161 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 110636686 Nonpathogen - hypothetical protein CHU_0261 1 None None None 110637545 Common - hypothetical protein CHU_1137 11 COG3197 FixS, Uncharacterized protein, possibly involved in nitrogen fixation Inorganic ion transport and metabolism 110638708 Nonpathogen recD endonuclease V CHU_2314 6 COG1515 Nfi, Deoxyinosine 3'endonuclease (endonuclease V) DNA replication, recombination, and repair 110636812 Common - hypothetical protein CHU_0389 6 None None None 110637098 Common fnr cyclic nucleotide binding-regulatory protein CHU_0678 37 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110637219 Common - alpha-tubulin suppressor CHU_0799 42 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 110637645 Common - CHU large protein; candidate bifunctional xylanase/esterase; CBM9 module, Glycoside Hydrolase Family 8 protein and Carbohydrate Esterase Family 4 protein CHU_1240 43 COG3405 CelA, Endoglucanase Y Carbohydrate transport and metabolism 110636655 Common - two-component sensor histidine kinase/response regulator CHU_0230 12 COG3292 COG3292, Predicted periplasmic ligand-binding sensor domain Signal transduction mechanisms 110638034 Common ycfF HIT family protein CHU_1632 183 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 110640054 Common - conserved hypothetical protein, with TPR repeat CHU_3688 35 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 110639931 Nonpathogen - hypothetical protein CHU_3565 1 None None None 110638164 Nonpathogen - hypothetical protein CHU_1764 1 None None None 110638489 Nonpathogen - hypothetical protein CHU_2093 1 None None None 110636854 Nonpathogen damX possible membrane protein; interferes with cell division CHU_0432 1 None None None 110637801 Common fabF 3-oxoacyl-[acyl-carrier-protein] synthase II CHU_1397 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110638526 Nonpathogen - hypothetical protein CHU_2130 1 None None None 110638023 Common - hypothetical protein CHU_1621 37 COG4420 COG4420, Predicted membrane protein Function unknown 110639224 Nonpathogen - hypothetical protein CHU_2843 1 None None None 110638461 Common ordL probable oxidoreductase CHU_2065 97 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 110638936 Common - hypothetical protein CHU_2550 2 None None None 110638274 Common glk glucokinase CHU_1875 142 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 110638574 Nonpathogen - hypothetical protein CHU_2178 1 None None None 110640028 Common corA magnesium and cobalt transport protein CHU_3662 190 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 110639797 Nonpathogen - hypothetical protein CHU_3428 1 None None None 110638994 Common - hypothetical protein CHU_2608 32 COG3422 COG3422, Uncharacterized conserved protein Function unknown 110636428 Common - capsular polysaccharide biosythesis protein CHU_0001 39 COG4464 CapC, Capsular polysaccharide biosynthesis protein Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 110637739 Common - hypothetical protein CHU_1334 27 COG4276 COG4276, Uncharacterized conserved protein Function unknown 110639669 Common trpA tryptophan synthase subunit alpha CHU_3297 218 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 110639510 Common rpsD 30S ribosomal protein S4 CHU_3137 228 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 110637668 Common ureG urease accessory protein CHU_1263 131 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 110636605 Common atpE ATP synthase, subunit C (H(+)-transporting two-sector ATPase) CHU_0180 13 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 110637792 Common yadT iron ABC transporter, periplasmic-binding protein CHU_1388 131 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 110639473 Common ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CHU_3100 196 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 110639726 Nonpathogen - membrane protein, RDD family CHU_3357 5 COG1714 COG1714, Predicted membrane protein/domain Function unknown 110640006 Common dsbC protein-disulfide isomerase CHU_3640 36 COG3531 COG3531, Predicted protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 110638325 Common ribE riboflavin synthase subunit alpha CHU_1926 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 110638785 Nonpathogen - hypothetical protein CHU_2396 1 None None None 110640043 Common lspA signal peptidase II CHU_3677 83 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110637559 Common yaeJ peptide chain release factor CHU_1151 109 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 110637348 Common hemL glutamate-1-semialdehyde aminomutase CHU_0936 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 110637568 Common - DNA-directed RNA polymerase specialized sigma subunit CHU_1160 8 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110639442 Common kefB potassium efflux system protein CHU_3068 192 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 110638171 Common yiiP cation transporter, permease component CHU_1771 99 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 110639969 Common rho transcription termination factor Rho CHU_3603 209 COG1158 Rho, Transcription termination factor Transcription 110638008 Common rpe ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase) CHU_1605 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 110639926 Common - hypothetical protein CHU_3560 18 None None None 110637873 Nonpathogen - hypothetical protein CHU_1469 1 None None None 110639062 Common yiaD possible outer membrane protein CHU_2677 156 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110637596 Common - hypothetical protein CHU_1188 2 None None None 110639116 Common - NADPH-dependent FMN reductase CHU_2733 7 COG0431 COG0431, Predicted flavoprotein General function prediction only 110637533 Nonpathogen - hypothetical protein CHU_1125 2 None None None 110638036 Common - CHU large protein; uncharacterized CHU_1634 12 None None None 110637089 Common - gamma-glutamyl carboxylase-like protein CHU_0669 7 None None None 110636431 Common - (2R)-phospho-3-sulfolactate synthase, comA family CHU_0004 22 COG1809 COG1809, Uncharacterized conserved protein Function unknown 110639915 Nonpathogen - hypothetical protein CHU_3549 1 None None None 110638409 Common - patatin-like protein CHU_2010 35 COG3621 COG3621, Patatin General function prediction only 110639098 Common - peptidoglycan-associated lipoprotein CHU_2715 158 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110636575 Common bphO bacteriophytochrome heme oxygenase CHU_0149 10 COG3230 HemO, Heme oxygenase Inorganic ion transport and metabolism 110637911 Common - hypothetical protein CHU_1507 2 None None None 110636499 Nonpathogen - hypothetical protein CHU_0072 1 None None None 110639054 Common pyrE orotate phosphoribosyltransferase CHU_2669 141 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 110638844 Nonpathogen - hypothetical protein CHU_2456 2 None None None 110639261 Common zraR response regulator of Zn/Pb responsive two-component regulatory system CHU_2881 218 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110639139 Common maa acetyltransferase with multiple hexapeptide repeats CHU_2756 61 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 110639394 Common mdh malate dehydrogenase CHU_3020 201 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 110637991 Common arsC arsenate reductase (glutaredoxin) CHU_1588 112 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 110639268 Common rfe glycosyltransferase family 4 protein CHU_2888 169 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 110638956 Common rhlE possible ATP-dependent RNA helicase CHU_2570 235 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110638001 Common deaD ATP-dependent RNA helicase (cold-shock DEAD-box protein A) CHU_1598 239 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110637730 Nonpathogen - conserved hypothetical protein (possible transporter) CHU_1325 18 COG0730 COG0730, Predicted permeases General function prediction only 110639358 Common - ABC transporter, permease component CHU_2984 35 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 110639752 Nonpathogen - hypothetical protein CHU_3383 1 None None None 110637296 Common - hypothetical protein CHU_0882 7 None None None 110636794 Nonpathogen - hypothetical protein CHU_0371 1 None None None 110637107 Common ygfA 5-formyltetrahydrofolate cyclo-ligase CHU_0687 145 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 110637635 Common - conserved hypothetical protein; possible permease CHU_1229 70 COG0628 PerM, Predicted permease General function prediction only 110639841 Common dsbD thiol:disulfide interchange protein CHU_3474 115 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 110639947 Common yeeF amino acid transport protein CHU_3581 191 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 110639923 Common - hypothetical protein CHU_3557 4 None None None 110637622 Common - anti-sigma regulatory factor (Ser/Thr protein kinase) CHU_1216 28 COG2172 RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) Signal transduction mechanisms 110637636 Common pqqL zinc protease CHU_1230 152 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 110639891 Common lhr ATP-dependent helicase CHU_3525 212 COG1201 Lhr, Lhr-like helicases General function prediction only 110637163 Common yccW possible oxidoreductase CHU_0743 25 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 110639090 Common rnhA ribonuclease HI CHU_2706 189 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 110638982 Common - conserved hypothetical protein; leucine-rich repeat containing protein CHU_2596 11 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 110637413 Common - hypothetical protein CHU_1003 9 None None None 110638738 Common - iron-containing alcohol dehydrogenase CHU_2347 164 COG1979 COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family Energy production and conversion 110636754 Common - hypothetical protein CHU_0331 20 None None None 110636543 Common rpsP 30S ribosomal protein S16 CHU_0117 206 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 110636897 Nonpathogen - hypothetical protein CHU_0475 1 None None None 110638482 Nonpathogen - hypothetical protein CHU_2086 1 None None None 110638561 Common - spore maturation-related protein CHU_2165 39 COG2715 SpmA, Uncharacterized membrane protein, required for spore maturation in B.subtilis. General function prediction only 110637396 Common - hypothetical protein CHU_0986 3 None None None 110638585 Nonpathogen - hypothetical protein CHU_2189 1 None None None 110636768 Common - hypothetical protein CHU_0345 3 None None None 110637841 Common ykgE oxidoreductase CHU_1437 161 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 110637061 Common - acetyltransferase, GNAT family CHU_0641 7 COG0456 RimI, Acetyltransferases General function prediction only 110638624 Common - ferredoxin 2 with 4Fe-4S binding domain CHU_2228 71 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 110638332 Nonpathogen - hypothetical protein CHU_1933 2 None None None 110639280 Nonpathogen - hypothetical protein CHU_2902 3 None None None 110638880 Common dsb dithiol-disulfide isomerase CHU_2493 86 COG2761 FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 110637034 Common - hypothetical protein CHU_0614 82 COG1556 COG1556, Uncharacterized conserved protein Function unknown 110639413 Common rplM 50S ribosomal protein L13 CHU_3039 230 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 110639960 Common - conserved hypothetical protein; possible arsenate reductase CHU_3594 109 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 110637012 Common alcA lysine/ornithine N-monooxygenase CHU_0592 52 COG3486 IucD, Lysine/ornithine N-monooxygenase Secondary metabolites biosynthesis, transport, and catabolism 110637952 Nonpathogen - hypothetical protein CHU_1548 1 None None None 110639955 Common ydiO acyl-CoA dehydrogenase CHU_3589 162 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110639790 Common nusA transcription elongation factor NusA CHU_3421 221 COG0195 NusA, Transcription elongation factor Transcription 110636554 Common secA preprotein translocase subunit SecA CHU_0128 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 110639287 Common - conserved hypothetical protein; possible HTH transcriptional regulator CHU_2912 78 COG0640 ArsR, Predicted transcriptional regulators Transcription 110639997 Common rpiB ribose 5-phosphate isomerase B CHU_3631 127 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 110638182 Nonpathogen - hypothetical protein CHU_1782 1 None None None 110636918 Common - conserved hypothetical protein; possible DNA uptake-related protein CHU_0496 43 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 110637682 Nonpathogen - hypothetical protein CHU_1277 1 None None None 110637626 Common phoB CheY-like response regulator CHU_1220 200 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 110638692 Common - hypothetical protein CHU_2298 208 COG0628 PerM, Predicted permease General function prediction only 110636645 Common - CHU large protein; uncharacterized CHU_0220 59 None None None 110637489 Common clpA ATP-dependent Clp protease, ATP-binding subunit CHU_1079 219 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 110638494 Common emrR transcriptional regulator, MarR family CHU_2098 30 COG1846 MarR, Transcriptional regulators Transcription 110639612 Common - zinc protease CHU_3239 162 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 110638600 Common cox15 polyprenyltransferase (cytochrome oxidase assembly factor) CHU_2204 170 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 110636536 Nonpathogen - hypothetical protein CHU_0110 1 None None None 110637850 Common alaS alanyl-tRNA synthetase CHU_1446 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110639148 Common - pyridoxal-phosphate-dependent aminotransferase CHU_2765 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 110639613 Nonpathogen - hypothetical protein CHU_3240 1 None None None 110638766 Nonpathogen - hypothetical protein CHU_2375 1 None None None 110637210 Nonpathogen - hypothetical protein CHU_0790 1 None None None 110640093 Common - CHU large protein; candidate b-glycosidase, CBM9 module, Glycoside Hydrolase Family 8 protein CHU_3727 32 COG3405 CelA, Endoglucanase Y Carbohydrate transport and metabolism 110637586 Nonpathogen - hypothetical protein CHU_1178 2 None None None 110638134 Common glnA glutamine synthetase CHU_1734 127 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 110638531 Common - hypothetical protein CHU_2135 4 None None None 110640178 Common - conserved hypothetical protein; possible calcineurin-like phosphoesterase CHU_3813 59 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 110637082 Common - hypothetical protein CHU_0662 10 None None None 110637619 Common - cell wall biosynthesis enzyme CHU_1213 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 110638650 Common - hypothetical protein CHU_2254 6 None None None 110640074 Nonpathogen - hypothetical protein CHU_3708 1 None None None 110638613 Common - hypothetical protein CHU_2217 6 None None None 110638093 Nonpathogen - hypothetical protein CHU_1692 1 None None None 110638683 Common - conserved hypothetical protein (possible transcription regulator) CHU_2289 143 COG1733 COG1733, Predicted transcriptional regulators Transcription 110638050 Nonpathogen - hypothetical protein CHU_1648 1 None None None 110637508 Nonpathogen - hypothetical protein CHU_1098 1 COG3748 COG3748, Predicted membrane protein Function unknown 110639023 Common - hypothetical protein CHU_2638 90 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 110638082 Common - hypothetical protein CHU_1681 17 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 110638087 Common - fatty-acid desaturase CHU_1686 47 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 110636993 Common - probable sugar kinase CHU_0573 222 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 110638243 Common fecE iron(III) ABC transporter, ATP-binding protein CHU_1843 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 110638676 Nonpathogen - hypothetical protein CHU_2282 1 None None None 110637918 Common arsM arsenite S-adenosylmethyltransferase CHU_1514 167 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110637484 Common - hypothetical protein CHU_1074 19 COG1295 Rbn, Predicted membrane protein Function unknown 110638713 Common - hypothetical protein CHU_2319 25 COG4898 COG4898, Uncharacterized protein conserved in bacteria Function unknown 110639464 Common rcsC sensor histidine kinase CHU_3091 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110637864 Common tatC component of Sec-independent translocase CHU_1460 203 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 110639858 Common - hypothetical protein CHU_3492 5 None None None 110637182 Common iscA Fe-S cluster formation protein CHU_0762 94 COG0316 IscA, Uncharacterized conserved protein Function unknown 110640165 Common - alkylated DNA repair protein CHU_3800 40 COG3145 AlkB, Alkylated DNA repair protein DNA replication, recombination, and repair 110639361 Common gapA glyceraldehyde-3-phosphate dehydrogenase A CHU_2987 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 110638468 Nonpathogen - hypothetical protein CHU_2072 3 None None None 110637291 Nonpathogen - hypothetical protein CHU_0876 1 None None None 110638500 Nonpathogen - hypothetical protein CHU_2104 3 COG3832 COG3832, Uncharacterized conserved protein Function unknown 110637049 Nonpathogen - hypothetical protein CHU_0629 1 None None None 110637771 Common - possible tonB-linked outer membrane receptor CHU_1366 115 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110637257 Common - CHU large protein; uncharacterized CHU_0839 6 None None None 110638507 Common - hypothetical protein CHU_2111 2 None None None 110638759 Nonpathogen - hypothetical protein CHU_2368 1 None None None 110638209 Common - hypothetical protein CHU_1809 44 COG3228 COG3228, Uncharacterized protein conserved in bacteria Function unknown 110637115 Common yafV amidase-type enzyme CHU_0695 159 COG0388 COG0388, Predicted amidohydrolase General function prediction only 110638223 Common - hypothetical protein CHU_1823 10 None None None 110637744 Common phnA alkylphosphonate uptake protein CHU_1339 106 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 110639126 Nonpathogen - hypothetical protein CHU_2743 3 None None None 110636620 Common rsbU sigma factor sigB regulation protein CHU_0195 107 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 110639625 Common yijO transcriptional regulator, AraC family CHU_3253 92 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110638204 Common lpxK tetraacyldisaccharide 4'-kinase (lipid A 4' kinase) CHU_1804 130 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 110638472 Common dps starvation-inducible DNA-binding protein CHU_2076 132 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 110636881 Common - conserved hypothetical protein; leucine-rich repeat (LRR) protein CHU_0459 22 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 110636487 Common wcaG GDP-fucose synthetase CHU_0060 209 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110637701 Nonpathogen - hypothetical protein CHU_1296 2 None None None 110637175 Nonpathogen - hypothetical protein CHU_0755 1 None None None 110638803 Nonpathogen - hypothetical protein CHU_2414 1 None None None 110639591 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase CHU_3218 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 110639800 Nonpathogen - hypothetical protein CHU_3431 1 None None None 110636573 Common mutS DNA mismatch repair protein CHU_0147 201 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 110639069 Common guaD guanine deaminase CHU_2684 163 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 110636665 Common thiC thiamine biosynthesis protein ThiC CHU_0240 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 110638534 Common mutT mutator protein, Nudix hydrolase, MutT family CHU_2138 12 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 110636611 Common sun tRNA/rRNA cytosine-C5-methylase (sun family protein) CHU_0186 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 110639703 Common - conserved hypothetical protein with alpha/beta hydrolase fold CHU_3334 20 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110639639 Nonpathogen - hypothetical protein CHU_3267 1 None None None 110639884 Common yehU possible 2-component sensor protein CHU_3518 41 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 110638967 Common dgkA diacylglycerol kinase CHU_2581 46 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 110638836 Common rsaD ABC transporter, ATP-binding CHU_2448 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 110637100 Common - transcriptional regulator, DeoR family CHU_0680 102 COG2378 COG2378, Predicted transcriptional regulator Transcription 110636838 Common - small-conductance mechanosensitive channel CHU_0415 75 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 110637264 Common rgpD polysaccharide ABC transporter, ATPase component CHU_0848 249 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 110638665 Common - hypothetical protein CHU_2270 11 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110638963 Common evgS sensor histidine kinase CHU_2577 212 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110639944 Common - conserved hypothetical protein; predicted ATP/GTP-binding CHU_3578 11 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 110636934 Nonpathogen - hypothetical protein CHU_0513 1 None None None 110638235 Common - conserved hypothetical protein; possible ATPase CHU_1835 153 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 110639490 Nonpathogen - hypothetical protein CHU_3117 1 None None None 110637889 Nonpathogen - hypothetical protein CHU_1485 1 None None None 110640181 Common - hypothetical protein CHU_3816 2 None None None 110639521 Common rpsH 30S ribosomal protein S8 CHU_3148 247 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 110639809 Nonpathogen - hypothetical protein CHU_3442 1 None None None 110638425 Common - Mn/Zn ABC transporter, ATP-binding protein CHU_2026 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 110638143 Common - hypothetical protein CHU_1743 41 COG5373 COG5373, Predicted membrane protein Function unknown 110639677 Common mrdA penicillin-binding protein 2 CHU_3305 204 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 110639779 Common - hypothetical protein CHU_3410 5 None None None 110639507 Common carA carbamoyl phosphate synthase small subunit CHU_3134 236 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 110639675 Nonpathogen - hypothetical protein CHU_3303 1 None None None 110636763 Common - hypothetical protein CHU_0340 147 COG1741 COG1741, Pirin-related protein General function prediction only 110637407 Common - dienelactone hydrolase-related protein CHU_0997 56 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 110638546 Common - hypothetical protein CHU_2150 15 None None None 110638124 Nonpathogen - hypothetical protein CHU_1724 1 None None None 110638555 Common bcr drug resistance transporter, Bcr/CflA family CHU_2159 196 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 110637307 Common - acyltransferase family protein CHU_0893 90 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 110637386 Common sufD iron-regulated ABC transporter, membrane-spanning permease CHU_0976 165 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 110638680 Nonpathogen - hypothetical protein CHU_2286 1 None None None 110639890 Common - ATP-dependent DNA ligase CHU_3524 95 COG1793 CDC9, ATP-dependent DNA ligase DNA replication, recombination, and repair 110639290 Common - hypothetical protein CHU_2915 13 COG4430 COG4430, Uncharacterized protein conserved in bacteria Function unknown 110638439 Common - CHU large protein; candidate xylanase, CBM9 module, Glycoside Hydrolase Family 10 protein CHU_2043 40 COG3693 XynA, Beta-1,4-xylanase Carbohydrate transport and metabolism 110637477 Common rcsC sensor histidine kinase CHU_1067 221 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110639172 Nonpathogen - hypothetical protein CHU_2790 1 None None None 110639376 Nonpathogen - conserved hypothetical protein; possible permease CHU_3002 7 None None None 110638363 Nonpathogen - hypothetical protein CHU_1964 1 None None None 110638762 Common - hypothetical protein CHU_2371 3 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 110637001 Common tufB protein chain elongation factor EF-Tu CHU_0581 2 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 110637426 Nonpathogen - hypothetical protein CHU_1016 1 None None None 110638211 Common mhpC probable 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase CHU_1811 160 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110637497 Common ydiS probable electron transfer flavoprotein CHU_1087 164 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 110637593 Common - hypothetical protein CHU_1185 14 COG5635 COG5635, Predicted NTPase (NACHT family) Signal transduction mechanisms 110639657 Common fumB fumarate hydratase, class I CHU_3285 146 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 110639823 Common - hypothetical protein CHU_3456 12 COG3356 COG3356, Predicted membrane protein Function unknown 110638487 Common - hypothetical protein CHU_2091 86 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 110638848 Common - hypothetical protein CHU_2460 7 None None None 110636467 Common - ATPase involved in DNA repair CHU_0040 60 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 110637143 Common norM multidrug resistance protein CHU_0723 180 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 110638778 Nonpathogen - hypothetical protein CHU_2388 1 None None None 110639744 Nonpathogen - hypothetical protein CHU_3375 1 None None None 110639300 Common - hypothetical protein CHU_2925 8 None None None 110638140 Common - hypothetical protein CHU_1740 4 None None None 110637042 Common - hypothetical protein CHU_0622 21 COG4447 COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor General function prediction only 110637358 Common truB pseudouridylate synthase (pseudouridine synthase) CHU_0948 245 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 110638898 Common - hypothetical protein CHU_2511 132 COG1739 COG1739, Uncharacterized conserved protein Function unknown 110638818 Common acsA acetyl-coenzyme A synthetase CHU_2429 216 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 110637324 Nonpathogen - conserved hypothetical protein; possible exonuclease V beta subunit CHU_0910 2 None None None 110637582 Nonpathogen - hypothetical protein CHU_1174 1 None None None 110638268 Nonpathogen - hypothetical protein CHU_1869 1 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110638247 Nonpathogen - hypothetical protein CHU_1847 1 None None None 110639316 Common - restriction/modification methyltransferase CHU_2941 155 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 110638667 Nonpathogen - hypothetical protein CHU_2272 3 None None None 110637221 Common - a-amylase, glycoside hydrolase family 57 protein CHU_0801 24 COG1449 COG1449, Alpha-amylase/alpha-mannosidase Carbohydrate transport and metabolism 110637908 Common cusA heavy metal efflux pump protein CHU_1504 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 110636818 Common - permease CHU_0395 153 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 110636965 Nonpathogen - hypothetical protein CHU_0545 4 COG3678 CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism 110636434 Nonpathogen - hypothetical protein CHU_0007 1 None None None 110639362 Common - hypothetical protein CHU_2988 2 None None None 110638679 Common - hypothetical protein CHU_2285 5 None None None 110637462 Common - hypothetical protein CHU_1052 91 COG3391 COG3391, Uncharacterized conserved protein Function unknown 110639309 Nonpathogen - hypothetical protein CHU_2934 1 None None None 110637238 Nonpathogen - hypothetical protein CHU_0818 1 None None None 110640212 Common rpmI 50S ribosomal protein L35 CHU_1644a 185 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 110638592 Common - hypothetical protein CHU_2196 3 None None None 110639202 Common - hypothetical protein CHU_2821 111 COG1331 COG1331, Highly conserved protein containing a thioredoxin domain Posttranslational modification, protein turnover, chaperones 110639541 Common rpoC DNA-directed RNA polymerase subunit beta' CHU_3168 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 110638383 Common kdpC potassium-transporting ATPase, subunit C CHU_1984 95 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 110639176 Common - hypothetical protein CHU_2794 49 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 110638194 Common - hypothetical protein CHU_1794 5 None None None 110637459 Nonpathogen - hypothetical protein CHU_1049 1 None None None 110638797 Common - esterase-related protein, carbohydrate esterase family 1 protein CHU_2408 42 COG3509 LpqC, Poly(3-hydroxybutyrate) depolymerase Secondary metabolites biosynthesis, transport, and catabolism 110636954 Nonpathogen - hypothetical protein CHU_0534 8 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 110640118 Common - outer membrane protein CHU_3752 8 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 110637684 Nonpathogen - hypothetical protein; possibly endoglucanase related CHU_1279 1 None None None 110637075 Common dbpA ATP-independent RNA helicase CHU_0655 238 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110637546 Common cyo cytochrome c oxidase, cbb3-type CHU_1138 157 COG3278 CcoN, Cbb3-type cytochrome oxidase, subunit 1 Posttranslational modification, protein turnover, chaperones 110636441 Common mutL DNA mismatch repair protein CHU_0014 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 110639810 Nonpathogen - hypothetical protein CHU_3443 1 None None None 110636637 Nonpathogen - hypothetical protein CHU_0212 1 None None None 110637129 Common - conserved hypothetical protein (possible metalloprotease) CHU_0709 14 None None None 110637179 Common - conserved hypothetical protein, with WD40 repeat CHU_0759 42 COG2319 COG2319, FOG: WD40 repeat General function prediction only 110638334 Nonpathogen - hypothetical protein CHU_1935 1 None None None 110636832 Common - conserved hypothetical protein, with TPR repeat CHU_0409 58 COG4995 COG4995, Uncharacterized protein conserved in bacteria Function unknown 110637120 Common - hypothetical protein CHU_0700 14 None None None 110638813 Common nadV hypothetical protein CHU_2424 23 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 110639234 Nonpathogen - hypothetical protein CHU_2853 1 None None None 110639313 Common - hypothetical protein CHU_2938 26 COG1479 COG1479, Uncharacterized conserved protein Function unknown 110638503 Nonpathogen - hypothetical protein CHU_2107 5 None None None 110640141 Common gltB glutamate synthase, large subunit CHU_3776 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 110638184 Common - hypothetical protein CHU_1784 11 None None None 110639184 Nonpathogen - hypothetical protein CHU_2803 1 None None None 110637351 Common - CHU large protein; uncharacterized CHU_0939 30 None None None 110636654 Nonpathogen - hypothetical protein CHU_0229 2 None None None 110637741 Common - CHU large protein; endoglucanase-related protein, glycoside hydrolase family 9 protein CHU_1336 23 None None None 110637243 Common - RNA polymerase specialized sigma subunit CHU_0824 19 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110639766 Nonpathogen rpsU 30S ribosomal protein S21 CHU_3397 1 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 110636603 Nonpathogen - hypothetical protein CHU_0178 1 None None None 110638687 Common - hypothetical protein CHU_2293 6 None None None 110638346 Common - oxidoreductase CHU_1947 22 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 110636712 Nonpathogen - hypothetical protein CHU_0288 1 None None None 110638752 Nonpathogen - hypothetical protein CHU_2361 1 None None None 110639213 Common prfB peptide chain release factor RF-2 CHU_2832 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 110637815 Common - probable NAD(FAD)-dependent dehydrogenase CHU_1411 79 COG2509 COG2509, Uncharacterized FAD-dependent dehydrogenases General function prediction only 110637019 Common gmk guanylate kinase (GMP kinase) CHU_0599 212 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 110637094 Common idi isopentenyl-diphosphate delta-isomerase CHU_0674 60 COG1443 Idi, Isopentenyldiphosphate isomerase Lipid metabolism 110638527 Common - cation-transporting ATPase CHU_2131 5 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 110639348 Common paaF probable enoyl-CoA hydratase CHU_2974 180 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 110638089 Common - CHU large protein; uncharacterized CHU_1688 11 None None None 110638395 Common - probable sulphatase CHU_1996 62 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 110638520 Common hutH histidine ammonia-lyase CHU_2124 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 110638010 Common - outer membrane protein, TonB-dependent receptor CHU_1607 51 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 110636529 Common barA sensor histidine kinase CHU_0103 219 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110638933 Common - glycosylase or SAM-dependent methyltransferase CHU_2547 15 None None None 110638987 Common - transglutaminase-like enzymes, putative cysteine protease CHU_2601 86 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 110640186 Common - ABC-type phosphate transporter, ATP-binding protein CHU_3821 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 110637605 Common tgt queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) CHU_1197 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 110636517 Common - hypothetical protein CHU_0090 23 None None None 110640103 Common - LacX-related protein CHU_3737 42 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 110639817 Common - CHU large protein; uncharacterized CHU_3450 110 COG3420 NosD, Nitrous oxidase accessory protein Inorganic ion transport and metabolism 110637469 Common folE GTP cyclohydrolase I CHU_1059 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 110638293 Common tktA transketolase CHU_1894 222 COG3959 COG3959, Transketolase, N-terminal subunit Carbohydrate transport and metabolism 110640173 Common - hypothetical protein CHU_3808 10 None None None 110639650 Common carB carbamoyl-phosphate synthase large subunit CHU_3278 236 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 110636647 Nonpathogen - hypothetical protein CHU_0222 1 None None None 110637339 Common dnaG DNA primase CHU_0927 220 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 110637122 Common pobR transcriptional regulatory protein, AraC-type CHU_0702 109 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110639498 Nonpathogen - hypothetical protein CHU_3125 1 None None None 110638374 Common trxC thioredoxin-like protein CHU_1975 39 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 110638288 Common - thioredoxin family protein CHU_1889 145 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 110638407 Common yiaD possible outer membrane protein CHU_2008 169 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110637844 Nonpathogen - transposase CHU_1440 5 None None None 110637443 Common qor NADPH:quinone reductase (quinone oxidoreductase) CHU_1033 126 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 110636720 Common purD phosphoribosylamine--glycine ligase (phosphoribosylglycinamide synthetase) (GARS) CHU_0296 232 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 110638548 Common basR two-component response regulator CHU_2152 206 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110639603 Common - hypothetical protein CHU_3230 18 COG4864 COG4864, Uncharacterized protein conserved in bacteria Function unknown 110638944 Nonpathogen - hypothetical protein CHU_2558 1 None None None 110637248 Common czcC outer membrane protein; cation efflux protein CHU_0829 39 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110637516 Common - CHU large protein; endoglucanase, glycoside hydrolase family 5 protein CHU_1107 27 COG2730 BglC, Endoglucanase Carbohydrate transport and metabolism 110637215 Common - possible 2Fe-2S ferredoxin CHU_0795 17 COG3411 COG3411, Ferredoxin Energy production and conversion 110639683 Common ubiA prenyltransferase CHU_3311 51 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 110638976 Common - possible chromosome segregation ATPase CHU_2590 6 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 110637302 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_0888 178 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110639876 Common - superfamily I DNA and RNA helicase CHU_3510 39 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 110637969 Common pepF oligoendopeptidase F CHU_1565 83 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 110639329 Nonpathogen - hypothetical protein CHU_2954 1 None None None 110638828 Common yjeE ATPase CHU_2440 189 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 110638891 Common nagD possible sugar phosphatase, HAD superfamily CHU_2504 114 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 110637883 Nonpathogen - hypothetical protein CHU_1479 1 None None None 110639723 Common hsdM type I restriction-modification system, M subunit CHU_3354 161 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 110639774 Nonpathogen - hypothetical protein CHU_3405 1 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 110637981 Common argS arginyl-tRNA synthetase CHU_1577 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110637202 Common - conserved hypothetical protein; leucine rich repeat protein CHU_0782 29 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 110637679 Common pdh prephenate dehydrogenase CHU_1274 81 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 110637316 Common - hypothetical protein CHU_0902 17 None None None 110637787 Common nuoA NADH dehydrogenase I chain A CHU_1382 160 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 110637273 Common - a-glycosyltransferase, glycosyltransferase family 4 protein CHU_0857 67 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110639251 Common - conserved hypothetical protein; possible ABC transporter, substrate-binding protein CHU_2871 16 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 110637087 Common - thiol oxidoreductase CHU_0667 49 COG3488 COG3488, Predicted thiol oxidoreductase Energy production and conversion 110637513 Nonpathogen - hypothetical protein CHU_1104 1 None None None 110636913 Common - DNA polymerase III gamma/tau subunit CHU_0491 212 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 110636827 Common - hypothetical protein CHU_0404 5 COG1287 COG1287, Uncharacterized membrane protein, required for N-linked glycosylation General function prediction only 110636802 Common tpn transposase CHU_0379 40 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 110637052 Common prc carboxy-terminal protease CHU_0632 184 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 110639502 Common - endonuclease IV CHU_3129 49 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 110636674 Nonpathogen - hypothetical protein CHU_0249 1 None None None 110639211 Common - conserved hypothetical protein, with TPR repeat CHU_2830 3 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 110637344 Common surE stationary phase survival protein SurE CHU_0932 185 COG0496 SurE, Predicted acid phosphatase General function prediction only 110639107 Common ahpC alkyl hydroperoxide reductase, subunit C CHU_2724 223 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110639685 Common - hypothetical protein CHU_3313 27 COG5495 COG5495, Uncharacterized conserved protein Function unknown 110639536 Common rpsJ 30S ribosomal protein S10 CHU_3163 244 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 110636860 Nonpathogen - hypothetical protein CHU_0438 1 None None None 110637861 Common - hypothetical protein CHU_1457 12 None None None 110637050 Nonpathogen - hypothetical protein CHU_0630 1 None None None 110639869 Common - conserved hypothetical protein; possible SAM-dependent methyltransferase CHU_3503 36 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 110636695 Common - hypothetical protein CHU_0270 3 None None None 110637994 Common - hypothetical protein CHU_1591 2 None None None 110639427 Common eutB ethanolamine ammonia-lyase, heavy chain CHU_3053 55 COG4303 EutB, Ethanolamine ammonia-lyase, large subunit Amino acid transport and metabolism 110638103 Common furR ferric uptake regulator protein CHU_1703 183 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 110639338 Nonpathogen - hypothetical protein CHU_2963 1 None None None 110639220 Common - hypothetical protein CHU_2839 115 COG1801 COG1801, Uncharacterized conserved protein Function unknown 110637524 Common - cyclic nucleotide binding regulatory protein CHU_1116 36 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110637763 Nonpathogen - hypothetical protein CHU_1358 5 None None None 110639706 Common - acetylxylan esterase-related protein, carbohydrate esterase family 2 protein CHU_3337 16 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 110638869 Nonpathogen - hypothetical protein CHU_2482 1 None None None 110639998 Common tatC sec-independent protein translocase CHU_3632 205 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 110637151 Nonpathogen - hypothetical protein CHU_0731 1 None None None 110637377 Nonpathogen - hypothetical protein CHU_0967 1 None None None 110638321 Nonpathogen - hypothetical protein CHU_1922 1 None None None 110636509 Common - hypothetical protein CHU_0082 94 COG2947 COG2947, Uncharacterized conserved protein Function unknown 110637820 Common - hypothetical protein CHU_1416 25 None None None 110637073 Common yliG 2-methylthioadenine synthetase CHU_0653 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 110637527 Nonpathogen - hypothetical protein CHU_1119 2 None None None 110636705 Common - hypothetical protein CHU_0281 2 None None None 110636744 Common ybiC probable malate/L-lactate dehydrogenase CHU_0320 67 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 110640019 Common - helicase-related protein CHU_3653 42 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 110638258 Common - hypothetical protein CHU_1859 4 None None None 110638654 Common yciK possible oxidoreductase CHU_2258 129 COG3967 DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) Cell envelope biogenesis, outer membrane 110636970 Common - hypothetical protein CHU_0550 4 None None None 110637853 Nonpathogen - hypothetical protein CHU_1449 1 None None None 110636560 Common - possible thiol-disulfide isomerase CHU_0134 13 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 110638771 Nonpathogen - hypothetical protein CHU_2381 1 None None None 110639698 Common - hypothetical protein CHU_3327 2 None None None 110638301 Nonpathogen - hypothetical protein CHU_1902 1 None None None 110636548 Common ydbK possible oxidoreductase, Fe-S subunit CHU_0122 65 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 110640099 Common purK phosphoribosylaminoimidazole carboxylase, ATPase subunit CHU_3733 193 COG0026 PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) Nucleotide transport and metabolism 110637834 Nonpathogen - hypothetical protein CHU_1430 1 None None None 110636889 Common manA mannose-6-phosphate isomerase CHU_0467 52 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 110639537 Common fusA elongation factor G CHU_3164 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 110636598 Common gldM gliding motility-related protein CHU_0173 6 None None None 110640013 Common - hypothetical protein CHU_3647 7 None None None 110638645 Common poxB pyruvate dehydrogenase (pyruvate oxidase) CHU_2249 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 110638151 Nonpathogen - hypothetical protein CHU_1751 11 None None None 110638948 Common - hypothetical protein CHU_2562 7 None None None 110638514 Common fabF 3-oxoacyl-[acyl-carrier-protein] synthase II CHU_2118 209 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110636627 Common hemG possible protoporphyrinogen oxidase CHU_0202 223 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 110639586 Common - conserved hypothetical protein; possible cell wall anchor protein CHU_3213 3 None None None 110638415 Common - hypothetical protein CHU_2016 7 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 110638046 Common infC translation initiation factor IF-3 CHU_1644 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 110639469 Nonpathogen - hypothetical protein CHU_3096 1 None None None 110638079 Common yfkO NAD(P)H-flavin oxidoreductase CHU_1678 27 COG0778 NfnB, Nitroreductase Energy production and conversion 110639441 Nonpathogen - hypothetical protein CHU_3067 4 None None None 110639901 Common arcB two-component sensor histidine kinase CHU_3535 26 COG2202 AtoS, FOG: PAS/PAC domain Signal transduction mechanisms 110637923 Nonpathogen - hypothetical protein CHU_1519 1 None None None 110637752 Common - DNA polymerase III epsilon subunit CHU_1347 99 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 110637670 Common narQ two-component sensor histidine kinase CHU_1265 166 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 110636727 Common yadF carbonate dehydratase CHU_0303 153 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 110638633 Common - hypothetical protein CHU_2237 23 COG3528 COG3528, Uncharacterized protein conserved in bacteria Function unknown 110636734 Common - hypothetical protein CHU_0310 13 COG3489 COG3489, Predicted periplasmic lipoprotein General function prediction only 110637982 Common btuE glutathione peroxidase CHU_1579 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 110636582 Common mltD lytic murein transglycosylase CHU_0157 90 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 110636442 Common - rhomboid family membrane protein CHU_0015 84 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 110637756 Common - hypothetical protein CHU_1351 6 None None None 110637194 Common hemE uroporphyrinogen decarboxylase CHU_0774 178 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 110638841 Nonpathogen - hypothetical protein CHU_2453 2 None None None 110637933 Nonpathogen - hypothetical protein CHU_1529 1 None None None 110640069 Common - hypothetical protein CHU_3703 53 COG3762 COG3762, Predicted membrane protein Function unknown 110636848 Nonpathogen - hypothetical protein CHU_0425 1 None None None 110640064 Common uvrA excinuclease ABC, subunit A CHU_3698 243 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 110639043 Common yegN multidrug efflux membrane fusion protein CHU_2658 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 110636584 Nonpathogen - hypothetical protein CHU_0159 1 None None None 110640156 Common - hypothetical protein CHU_3791 8 None None None 110637158 Nonpathogen - hypothetical protein CHU_0738 1 None None None 110638012 Common - conserved hypothetical protein; possible surface layer protein CHU_1609 11 COG3391 COG3391, Uncharacterized conserved protein Function unknown 110638992 Common ompA outer membrane peptidoglycan-associated protein CHU_2606 153 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110637278 Common - conserved hypothetical protein; possible protoporphyrinogen oxidase CHU_0862 55 COG1232 HemY, Protoporphyrinogen oxidase Coenzyme metabolism 110639005 Common hyfC NADH:ubiquinone oxidoreductase chain H CHU_2620 185 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 110639398 Common - acyl CoA thioester hydrolase family protein CHU_3024 133 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 110639862 Common - hypothetical protein CHU_3496 3 None None None 110639732 Common - hypothetical protein CHU_3363 18 COG5267 COG5267, Uncharacterized protein conserved in bacteria Function unknown 110636928 Common - hypothetical protein CHU_0507 4 None None None 110638576 Common dppC oligopeptide ABC transporter, permease CHU_2180 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 110639283 Common - conserved hypothetical protein, ribonucleoprotein-related CHU_2908 15 None None None 110639512 Common rpsM 30S ribosomal protein S13 CHU_3139 243 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 110638436 Common - CHU large protein; esterase-related protein, CBM9 module, carbohydrate esterase family 1 protein CHU_2040 77 COG3509 LpqC, Poly(3-hydroxybutyrate) depolymerase Secondary metabolites biosynthesis, transport, and catabolism 110639387 Nonpathogen - hypothetical protein CHU_3013 1 None None None 110639978 Common mgtC MgtC family protein CHU_3612 105 COG1285 SapB, Uncharacterized membrane protein Function unknown 110638904 Common - hypothetical protein CHU_2517 2 None None None 110638256 Nonpathogen - hypothetical protein CHU_1857 1 None None None 110640004 Nonpathogen - hypothetical protein CHU_3638 3 None None None 110636987 Common - possible transmembrane protein CHU_0567 25 COG0730 COG0730, Predicted permeases General function prediction only 110638980 Common - hypothetical protein CHU_2594 15 None None None 110636433 Common aroE shikimate 5-dehydrogenase CHU_0006 195 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 110638320 Common - lactoylglutathione lyase-related protein CHU_1921 15 COG3324 COG3324, Predicted enzyme related to lactoylglutathione lyase General function prediction only 110637458 Common - probable methylated DNA-protein cysteine methyltransferase CHU_1048 15 COG3695 COG3695, Predicted methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 110636895 Common - hypothetical protein CHU_0473 2 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 110638032 Common ldhA phosphoglycerate dehydrogenase CHU_1630 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 110638882 Nonpathogen - hypothetical protein CHU_2495 1 None None None 110639111 Nonpathogen - hypothetical protein CHU_2728 1 None None None 110637184 Common pheA prephenate dehydratase CHU_0764 207 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 110637718 Common ligA DNA ligase CHU_1313 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 110638958 Common ahpF alkyl hydroperoxide reductase, F52a subunit CHU_2572 193 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 110638339 Nonpathogen - hypothetical protein CHU_1940 1 None None None 110639430 Common tpn transposase, IS3 family CHU_3056 143 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 110637220 Common - ABC transporter, ATP-binding protein CHU_0800 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 110639198 Common ilvE branched-chain-amino-acid transaminase CHU_2817 198 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 110640045 Nonpathogen - hypothetical protein CHU_3679 4 None None None 110637298 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_0884 86 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 110639917 Nonpathogen - hypothetical protein CHU_3551 1 None None None 110636956 Nonpathogen - hypothetical protein CHU_0536 1 None None None 110638281 Nonpathogen - hypothetical protein CHU_1882 1 None None None 110637080 Common - hypothetical protein CHU_0660 64 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 110637598 Common - nuclease CHU_1190 61 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 110639128 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase CHU_2745 211 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 110638843 Common - conserved hypothetical protein; possible glucosyltransferase-S CHU_2455 40 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 110637566 Common - conserved hypothetical protein; leucine-rich repeat (LRR) protein CHU_1158 41 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 110637875 Common - hypothetical protein CHU_1471 5 None None None 110637284 Common wcaL a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0868 153 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110639262 Common yccZ polysaccharide export protein CHU_2882 98 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 110637899 Nonpathogen - hypothetical protein CHU_1495 1 None None None 110639096 Nonpathogen - hypothetical protein CHU_2713 13 None None None 110639940 Common - thiol-disulfide isomerase/thioredoxin CHU_3574 30 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110639635 Common - possible Fe-S oxidoreductase, SAM radical superfamily CHU_3263 118 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 110637105 Common cysE serine O-acetyltransferase CHU_0685 190 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 110638480 Common rcsC sensor for ctr capsule biosynthesis; sensor histidine kinase CHU_2084 220 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110639526 Common rpsQ 30S ribosomal protein S17 CHU_3153 229 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 110639949 Common - hypothetical protein CHU_3583 9 None None None 110637887 Nonpathogen - hypothetical protein CHU_1483 1 None None None 110639993 Common - superfamily II DNA/RNA helicase, SNF2 family CHU_3627 135 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 110636545 Common trmD tRNA (guanine-N(1)-)-methyltransferase CHU_0119 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 110639921 Nonpathogen - hypothetical protein CHU_3555 1 None None None 110639967 Nonpathogen - hypothetical protein CHU_3601 1 None None None 110636622 Common - transcriptional regulator, rrf2 family CHU_0197 170 COG1959 COG1959, Predicted transcriptional regulator Transcription 110636471 Nonpathogen - hypothetical protein CHU_0044 1 None None None 110640025 Nonpathogen - hypothetical protein CHU_3659 1 None None None 110638027 Common plsX fatty acid/phospholipid synthesis protein CHU_1625 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 110639836 Common gltB glutamate synthase, large subunit CHU_3469 202 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 110639691 Common - transcriptional regulator, AsnC/Lrp family CHU_3319 160 COG1522 Lrp, Transcriptional regulators Transcription 110637652 Common yjhC probable dehydrogenase CHU_1247 182 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 110639327 Nonpathogen - hypothetical protein CHU_2952 2 None None None 110638313 Common - ribonuclease Z CHU_1914 110 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 110639807 Common - CHU large protein; glycoside hydrolase family 8 protein, beta-glycosidase related CHU_3440 16 COG3405 CelA, Endoglucanase Y Carbohydrate transport and metabolism 110637663 Common livG branched-chain amino acid ABC transporter, ATP-binding protein CHU_1258 249 COG4674 COG4674, Uncharacterized ABC-type transport system, ATPase component General function prediction only 110639137 Common ffh signal recognition particle protein CHU_2754 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 110637732 Common - hypothetical protein CHU_1327 16 None None None 110639754 Common - hypothetical protein CHU_3385 2 None None None 110637535 Common - hypothetical protein CHU_1127 77 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 110636752 Nonpathogen - hypothetical protein CHU_0329 1 None None None 110638177 Common - peptidase, M23/M37 family CHU_1777 192 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 110637165 Common chpA probable growth inhibitor, PemK-like protein CHU_0745 32 COG2337 MazF, Growth inhibitor Signal transduction mechanisms 110637746 Common alf fructose-1,6-bisphosphate aldolase CHU_1341 43 COG3588 COG3588, Fructose-1,6-bisphosphate aldolase Carbohydrate transport and metabolism 110639879 Nonpathogen - hypothetical protein CHU_3513 1 None None None 110640167 Common - conserved hypothetical protein; possible protease CHU_3802 25 COG4412 COG4412, Uncharacterized protein conserved in bacteria Function unknown 110640058 Common - a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_3692 85 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110636806 Common - hypothetical protein CHU_0383 8 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110637970 Nonpathogen - hypothetical protein CHU_1566 1 None None None 110638790 Nonpathogen - hypothetical protein CHU_2401 1 None None None 110637440 Nonpathogen - hypothetical protein CHU_1030 1 None None None 110638938 Common - hypothetical protein CHU_2552 3 None None None 110639462 Common evgS sensor histidine kinase/response regulator fusion protein CHU_3089 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110636787 Nonpathogen - hypothetical protein CHU_0364 1 None None None 110640085 Common - TPR domain protein CHU_3719 11 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 110639391 Common - TPR repeat protein CHU_3017 20 COG4105 ComL, DNA uptake lipoprotein General function prediction only 110637529 Common - hypothetical protein CHU_1121 30 COG3832 COG3832, Uncharacterized conserved protein Function unknown 110639977 Nonpathogen - hypothetical protein CHU_3611 1 None None None 110640130 Common - fatty acid desaturase CHU_3764 39 COG3239 DesA, Fatty acid desaturase Lipid metabolism 110638928 Common - transposase CHU_2542 9 None None None 110639121 Common murC UDP-N-acetylmuramate--L-alanine ligase CHU_2738 211 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 110639100 Common - tonB-related protein CHU_2717 5 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 110639486 Common - membrane protein CHU_3113 8 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 110637677 Common hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase CHU_1272 214 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 110638644 Common - peroxidase CHU_2248 24 COG2837 COG2837, Predicted iron-dependent peroxidase Inorganic ion transport and metabolism 110639785 Common - carboxypeptidase CHU_3416 76 COG1619 LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF Defense mechanisms 110637391 Common - b-glycosidase, glycoside hydrolase family 16 protein CHU_0981 45 COG2273 SKN1, Beta-glucanase/Beta-glucan synthetase Carbohydrate transport and metabolism 110639571 Common gspG possible type II general secretion pathway (GSP) G protein CHU_3198 2 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 110637096 Common - hypothetical protein CHU_0676 109 COG2353 COG2353, Uncharacterized conserved protein Function unknown 110639118 Common ftsZ cell division protein CHU_2735 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 110636492 Common lrp transcriptional regulator, AsnC family CHU_0065 160 COG1522 Lrp, Transcriptional regulators Transcription 110636780 Common psd phosphatidylserine decarboxylase CHU_0357 89 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 110637577 Nonpathogen - hypothetical protein CHU_1169 1 None None None 110639487 Common - hypothetical protein CHU_3114 26 COG4731 COG4731, Uncharacterized protein conserved in bacteria Function unknown 110639164 Nonpathogen - hypothetical protein CHU_2782 1 None None None 110640052 Common mutY A/G-specific adenine glycosylase CHU_3686 230 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 110638877 Common - transcriptional regulator CHU_2490 145 COG1733 COG1733, Predicted transcriptional regulators Transcription 110637066 Common hemB delta-aminolevulinic acid dehydratase CHU_0646 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 110638972 Common ung uracil-DNA glycosylase CHU_2586 129 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 110637948 Nonpathogen - hypothetical protein CHU_1544 1 None None None 110639439 Common murQ N-acetylmuramic acid-6-phosphate etherase CHU_3065 85 COG2103 COG2103, Predicted sugar phosphate isomerase General function prediction only 110639471 Common - hypothetical protein CHU_3098 30 COG4807 COG4807, Uncharacterized protein conserved in bacteria Function unknown 110638218 Nonpathogen - hypothetical protein CHU_1818 1 None None None 110636852 Common - alpha-tubulin suppressor CHU_0430 38 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 110637410 Nonpathogen - conserved hypothetical protein; tryptophan repeat family protein CHU_1000 1 None None None 110639576 Common - hypothetical protein CHU_3203 5 None None None 110636825 Common folA dihydrofolate reductase (DHFR) CHU_0402 48 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 110638162 Common - hypothetical protein CHU_1762 2 None None None 110637624 Common - possible negative regulator of sigma-B CHU_1218 28 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 110639295 Common - conserved hypothetical protein with multiple leucine-rich repeat domains CHU_2920 21 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 110637173 Common - hypothetical protein CHU_0753 42 COG2912 COG2912, Uncharacterized conserved protein Function unknown 110638343 Common yliI L-sorbosone dehydrogenase CHU_1944 66 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 110639795 Common kup low affinity potassium transport system CHU_3426 88 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 110636980 Common soxD sulfite oxidase cytochrome subunit CHU_0560 28 COG3258 COG3258, Cytochrome c Energy production and conversion 110638783 Common - hypothetical protein CHU_2394 6 None None None 110638112 Nonpathogen - hypothetical protein CHU_1712 1 None None None 110636489 Common - possible methyltransferase CHU_0062 61 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 110638084 Common rfaQ heptosyltransferase-related protein, glycosyltransferase family 9 protein CHU_1683 100 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 110637647 Nonpathogen - hypothetical protein CHU_1242 1 None None None 110637610 Common - hypothetical protein CHU_1202 9 None None None 110637482 Common - hypothetical protein CHU_1072 183 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 110639015 Nonpathogen - hypothetical protein CHU_2630 1 None None None 110639854 Nonpathogen - hypothetical protein CHU_3488 1 COG4313 COG4313, Protein involved in meta-pathway of phenol degradation Energy production and conversion 110639910 Common ydiP possible ARAC-type regulatory protein CHU_3544 72 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110638021 Nonpathogen - hypothetical protein CHU_1618 1 None None None 110639470 Common - possible ECF-family RNA polymerase sigma factor CHU_3097 95 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110637411 Nonpathogen - hypothetical protein CHU_1001 1 None None None 110639444 Common - hypothetical protein CHU_3070 3 None None None 110639319 Common - hypothetical protein CHU_2944 3 None None None 110638450 Nonpathogen - hypothetical protein CHU_2054 1 None None None 110639277 Nonpathogen - hypothetical protein CHU_2898 1 None None None 110637047 Common miaE hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA CHU_0627 40 COG4445 MiaE, Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 110638448 Nonpathogen - hypothetical protein CHU_2052 1 None None None 110638145 Common - hypothetical protein CHU_1745 102 COG0431 COG0431, Predicted flavoprotein General function prediction only 110638625 Common pgk phosphoglycerate kinase CHU_2229 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 110636932 Common nuoC NADH dehydrogenase I chain C, D CHU_0511 174 COG0852 NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit Energy production and conversion 110637959 Common - hypothetical protein CHU_1555 9 None None None 110639664 Common trpD anthranilate phosphoribosyltransferase CHU_3292 217 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 110636571 Nonpathogen - hypothetical protein CHU_0145 6 None None None 110638199 Common - hypothetical protein CHU_1799 6 None None None 110638427 Common mntD Mn2+/Zn2+ ABC transporter, permease CHU_2028 159 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 110637250 Common czcA cation eflux protein CHU_0831 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 110637790 Nonpathogen - hypothetical protein CHU_1386 1 None None None 110639182 Common fbpS RNA-binding protein CHU_2801 76 COG1293 COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP Transcription 110639805 Common - CHU large protein; uncharacterized CHU_3437 24 None None None 110639936 Common ychM possible sulfate transporter CHU_3570 148 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 110636551 Common pal outer membrane protein, peptidoglycan-associated lipoprotein CHU_0125 149 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110636667 Common thiE thiamine-phosphate pyrophosphorylase CHU_0242 204 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 110639337 Nonpathogen - hypothetical protein CHU_2962 1 None None None 110639085 Common pyrD dihydroorotate dehydrogenase CHU_2701 231 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 110638536 Common tfdD mandelate racemase/muconate lactonizing enzyme family; possible chloromuconate cycloisomerase CHU_2140 149 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 110638390 Common - possible sugar nucleotide epimerase CHU_1991 45 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110637799 Common - hypothetical protein CHU_1395 2 None None None 110638190 Common - hypothetical protein CHU_1790 6 None None None 110639241 Common acrB acridine efflux pump CHU_2860 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 110637153 Common yncD probable tonB-dependent receptor CHU_0733 73 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110637435 Nonpathogen - hypothetical protein CHU_1025 1 None None None 110638205 Common - hypothetical protein CHU_1805 88 COG0327 COG0327, Uncharacterized conserved protein Function unknown 110638397 Common amn AMP nucleosidase CHU_1998 80 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 110639957 Common fadB 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase CHU_3591 163 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 110636688 Common - hypothetical protein CHU_0263 6 None None None 110638670 Common yhjA cytochrome C peroxidase CHU_2275 95 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 110636629 Common - hypothetical protein CHU_0204 33 COG5587 COG5587, Uncharacterized conserved protein Function unknown 110639679 Common mreC rod shape-determining protein CHU_3307 83 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 110639652 Nonpathogen - hypothetical protein CHU_3280 1 None None None 110637617 Common wcaJ sugar transferase; possible UDP-glucose lipid carrier transferase CHU_1211 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 110638826 Nonpathogen - hypothetical protein CHU_2437 2 None None None 110638230 Common yqaB possible phosphatase CHU_1830 157 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 110639396 Nonpathogen - hypothetical protein CHU_3022 1 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 110638705 Common - hypothetical protein CHU_2311 15 None None None 110639215 Common - hypothetical protein CHU_2834 4 None None None 110639701 Common - hypothetical protein CHU_3332 17 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110637693 Nonpathogen - hypothetical protein CHU_1288 1 None None None 110636719 Nonpathogen - hypothetical protein CHU_0295 1 None None None 110636761 Common - hypothetical protein CHU_0338 3 None None None 110637263 Common - polysaccharide ABC transporter, permease CHU_0847 121 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 110639670 Nonpathogen - hypothetical protein CHU_3298 1 None None None 110638580 Common - hypothetical protein CHU_2184 2 COG0392 COG0392, Predicted integral membrane protein Function unknown 110639496 Common clpB heat shock protein with various ATPase domains CHU_3123 217 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 110639509 Common rpoA DNA-directed RNA polymerase subunit alpha CHU_3136 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 110636789 Common pdhR transcriptional regulator for pyruvate dehydrogenase complex, GntR family CHU_0366 142 COG2186 FadR, Transcriptional regulators Transcription 110637017 Common - CHU large protein; uncharacterized CHU_0597 91 None None None 110639637 Nonpathogen - hypothetical protein CHU_3265 1 None None None 110636796 Common ruvB Holliday junction DNA helicase B CHU_0373 212 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 110639708 Common yxkH polysaccharide deacetylase CHU_3339 6 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 110637405 Common serC phosphoserine aminotransferase CHU_0995 190 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 110637640 Nonpathogen - hypothetical protein CHU_1234 1 None None None 110637200 Nonpathogen rpoE DNA-directed RNA polymerase specialized sigma subunit CHU_0780 2 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110640183 Common pstS phosphate ABC transporter, periplasmic phosphate-binding protein CHU_3818 167 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 110638068 Common purL phosphoribosylformylglycinamidine synthase CHU_1667 232 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 110638690 Common - general stress protein CHU_2296 35 COG3871 COG3871, Uncharacterized stress protein (general stress protein 26) General function prediction only 110639528 Common rplP 50S ribosomal protein L16 CHU_3155 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 110638457 Common xthA exodeoxyribonuclease III (exonuclease III) CHU_2061 196 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 110637032 Common - hypothetical protein CHU_0612 197 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 110638057 Common gluP glucose/galactose transporter CHU_1656 48 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 110637711 Common - permease, DMT superfamily CHU_1306 151 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 110637010 Common iscS putative L-2,4-diaminobutyrate decarboxylase CHU_0590 126 COG0076 GadB, Glutamate decarboxylase and related PLP-dependent proteins Amino acid transport and metabolism 110639856 Common hemH ferrochelatase CHU_3490 167 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 110638496 Nonpathogen - hypothetical protein CHU_2100 1 None None None 110639989 Common - hypothetical protein CHU_3623 2 COG3878 COG3878, Uncharacterized protein conserved in bacteria Function unknown 110636798 Common - hypothetical protein CHU_0375 8 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 110637620 Common - conserved hypothetical protein, with TPR repeat CHU_1214 43 COG4995 COG4995, Uncharacterized protein conserved in bacteria Function unknown 110638361 Common - hypothetical protein CHU_1962 3 None None None 110637506 Common - hypothetical protein CHU_1096 6 None None None 110639270 Common - a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_2891 21 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110639411 Common rpsB 30S ribosomal subunit protein S2 CHU_3037 216 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 110637588 Nonpathogen - hypothetical protein CHU_1180 1 None None None 110639619 Nonpathogen ccmB possible ABC transport permease, cytochrome c biogenesis CHU_3246 3 COG2386 CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 110636851 Nonpathogen - hypothetical protein CHU_0429 1 None None None 110638615 Common ychF translation-associated GTPase CHU_2219 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 110638441 Nonpathogen - hypothetical protein CHU_2045 1 None None None 110637360 Nonpathogen - hypothetical protein CHU_0950 1 None None None 110640122 Common - hypothetical protein CHU_3756 4 None None None 110638949 Common dapB dihydrodipicolinate reductase CHU_2563 213 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 110639289 Common - hypothetical protein CHU_2914 11 None None None 110639719 Common intQ integrase CHU_3350 148 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 110637896 Common umuC nucleotidyltransferase/DNA polymerase involved in DNA repair CHU_1492 181 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 110639052 Common coaD pantetheine-phosphate adenylyltransferase (phosphopantetheine adenylyltransferase) CHU_2667 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 110637369 Common amyA a-glycosidase, glycoside hydrolase family 13 protein CHU_0959 154 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 110639146 Common - conserved hypothetical protein; possible dTDP-6-deoxy-L-hexose 3-O-methyltransferase CHU_2763 31 None None None 110639648 Common prmA ribosomal protein L11 methyltransferase CHU_3276 172 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 110636991 Common - hypothetical protein CHU_0571 7 None None None 110637259 Nonpathogen - hypothetical protein CHU_0843 1 None None None 110637807 Common gntT high-affinity gluconate transporter CHU_1403 76 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 110638834 Nonpathogen - hypothetical protein CHU_2446 1 None None None 110637040 Nonpathogen - hypothetical protein CHU_0620 3 None None None 110639226 Common kdsB 3-deoxy-manno-octulosonate cytidylyltransferase CHU_2845 139 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 110639038 Common - hypothetical protein CHU_2653 108 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 110639624 Common - hypothetical protein CHU_3252 4 None None None 110636998 Common frr ribosome recycling factor (ribosome releasing factor) CHU_0578 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 110638685 Common - DNA topoisomerase IB CHU_2291 45 COG3569 COG3569, Topoisomerase IB DNA replication, recombination, and repair 110636742 Nonpathogen - hypothetical protein CHU_0318 1 None None None 110638095 Nonpathogen - hypothetical protein CHU_1694 1 None None None 110638906 Nonpathogen - hypothetical protein CHU_2519 1 None None None 110638910 Common yafV possible carbon-nitrogen hydrolase CHU_2523 163 COG0388 COG0388, Predicted amidohydrolase General function prediction only 110638070 Nonpathogen - hypothetical protein CHU_1669 2 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 110639459 Common argB acetylglutamate kinase CHU_3086 219 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 110637829 Common fabG 3-oxoacyl-[acyl-carrier-protein] reductase CHU_1425 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110639610 Common - hypothetical protein CHU_3237 7 None None None 110638747 Common - hypothetical protein CHU_2356 11 COG4529 COG4529, Uncharacterized protein conserved in bacteria Function unknown 110639450 Common - hypothetical protein CHU_3077 5 None None None 110638699 Common tpn transposase, IS3 family CHU_2305 144 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 110640176 Common blgA b-glycosidase, glycoside hydrolase family 1 protein CHU_3811 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 110636630 Common yeeZ nucleoside-diphosphate-sugar epimerases CHU_0205 54 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110638189 Common - hypothetical protein CHU_1789 48 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110637726 Common norV possible rubredoxin CHU_1321 48 COG1773 COG1773, Rubredoxin Energy production and conversion 110637777 Common nuoK NADH dehydrogenase I chain K CHU_1372 161 COG0713 NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) Energy production and conversion 110637068 Common rpmB 50S ribosomal protein L28 CHU_0648 172 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 110638607 Common nfrD probable molybdopterin oxidoreductase CHU_2211 39 COG5557 COG5557, Polysulphide reductase Energy production and conversion 110638276 Common menE O-succinylbenzoic acid--CoA ligase CHU_1877 110 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110637916 Common - cation efflux protein CHU_1512 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 110638192 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_1792 189 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110638090 Nonpathogen - hypothetical protein CHU_1689 1 None None None 110637505 Common - hypothetical protein CHU_1095 4 COG4859 COG4859, Uncharacterized protein conserved in bacteria Function unknown 110638119 Common - hypothetical protein CHU_1719 6 None None None 110637332 Nonpathogen - hypothetical protein CHU_0918 1 None None None 110636493 Nonpathogen - hypothetical protein CHU_0066 2 None None None 110638711 Common - conserved hypothetical protein (possible dihydrofolate reductase) CHU_2317 32 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 110637796 Common - transglutaminase-like enzyme, possible cysteine protease CHU_1392 78 COG4196 COG4196, Uncharacterized protein conserved in bacteria Function unknown 110639029 Common - ABC transporter, ATP-binding protein CHU_2644 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 110636831 Common - hypothetical protein CHU_0408 6 None None None 110638463 Nonpathogen - hypothetical protein CHU_2067 1 None None None 110640008 Common yfbB hydrolase of the alpha/beta superfamily CHU_3642 139 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110638878 Common hrpA ATP-dependent helicase CHU_2491 132 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 110639021 Common cysG uroporphyrin-III C-methyltransferase (uroporphyrinogen III methylase) CHU_2636 203 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 110637217 Common ftnA ferritin-like protein CHU_0797 81 COG1528 Ftn, Ferritin-like protein Inorganic ion transport and metabolism 110637400 Nonpathogen - hypothetical protein CHU_0990 1 None None None 110636968 Common - hypothetical protein CHU_0548 4 None None None 110636743 Common muiA conserved hypothetical protein; possible mucoidy inhibitor-related protein CHU_0319 26 COG5316 COG5316, Uncharacterized conserved protein Function unknown 110638945 Nonpathogen - hypothetical protein CHU_2559 1 None None None 110636821 Nonpathogen - hypothetical protein CHU_0398 1 None None None 110637921 Common accA acetyl-CoA carboxylase, carboxytransferase component, alpha subunit CHU_1517 188 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 110637831 Nonpathogen - hypothetical protein CHU_1427 4 None None None 110636700 Nonpathogen - conserved hypothetical protein; possible methyltransferase CHU_0276 4 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 110638453 Common atoS sensor protein for response regulator AtoC CHU_2057 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110636732 Common glgP a-glucan phosphorylase, glycosyltransferase family 35 protein CHU_0308 101 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 110638606 Common - hypothetical protein CHU_2210 21 None None None 110639598 Common dppB dipeptide ABC transporter, permease component CHU_3225 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 110636635 Common - hypothetical protein CHU_0210 13 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 110636464 Common - Zn-dependent hydrolase CHU_0037 16 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 110639668 Common trpB tryptophan synthase subunit beta CHU_3296 226 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 110637758 Common trxA thioredoxin C-2 CHU_1353 236 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 110638658 Common - hypothetical protein CHU_2262 14 None None None 110639602 Common - hypothetical protein CHU_3229 3 COG1030 NfeD, Membrane-bound serine protease (ClpP class) Posttranslational modification, protein turnover, chaperones 110637245 Common - conserved hypothetical protein; possible permease CHU_0826 71 COG1284 COG1284, Uncharacterized conserved protein Function unknown 110637600 Common pbpC candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase, candidate murein polymerase, Glycosyltransferase Family 51 protein CHU_1192 200 COG4953 PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC Cell envelope biogenesis, outer membrane 110637894 Nonpathogen - hypothetical protein CHU_1490 1 None None None 110639032 Common - outer membrane efflux protein CHU_2647 61 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110638660 Nonpathogen - hypothetical protein CHU_2264 1 None None None 110638501 Common xynT xylanase; N-terminal CBM4 module, glycoside hydrolase family 10 protein CHU_2105 34 COG3693 XynA, Beta-1,4-xylanase Carbohydrate transport and metabolism 110639692 Common metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase CHU_3320 141 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 110640161 Common - possible oxidoreductase CHU_3796 52 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 110638511 Common fabG 3-oxoacyl-[acyl-carrier protein] synthase CHU_2115 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110640098 Common - conserved hypothetical protein; possible outer membrane protein CHU_3732 14 None None None 110638282 Nonpathogen - hypothetical protein CHU_1883 1 None None None 110636868 Nonpathogen - hypothetical protein CHU_0446 1 None None None 110636707 Common - conserved hypothetical protein, with TPR repeat CHU_0283 70 COG4995 COG4995, Uncharacterized protein conserved in bacteria Function unknown 110638242 Common cel candidate retaining b-glycosidase, glycoside hydrolase family 5 protein CHU_1842 23 COG2730 BglC, Endoglucanase Carbohydrate transport and metabolism 110640154 Common - hypothetical protein CHU_3789 9 COG3832 COG3832, Uncharacterized conserved protein Function unknown 110639986 Common - conserved hypothetical protein, with TPR repeat CHU_3620 17 None None None 110636593 Nonpathogen - conserved hypothetical protein, alkaline phosphatase superfamily CHU_0168 1 None None None 110637782 Common nuoF NADH dehydrogenase I chain F CHU_1377 170 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 110637330 Common amtB ammonium transporter CHU_0916 201 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 110636921 Common - hypothetical protein CHU_0499 40 COG4748 COG4748, Uncharacterized conserved protein Function unknown 110636947 Common - hypothetical protein CHU_0527 2 None None None 110637672 Nonpathogen - hypothetical protein CHU_1267 1 None None None 110639036 Nonpathogen - hypothetical protein CHU_2651 2 None None None 110636908 Common natB ABC-type Na+ efflux pump, permease component CHU_0486 44 COG1668 NatB, ABC-type Na+ efflux pump, permease component Energy production and conversion / Inorganic ion transport and metabolism 110640119 Nonpathogen - hypothetical protein CHU_3753 11 COG4339 COG4339, Uncharacterized protein conserved in bacteria Function unknown 110640035 Common - ABC transporter, ATP-binding protein CHU_3669 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 110639003 Nonpathogen nuoJ NADH:ubiquinone oxidoreductase chain J CHU_2618 1 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 110638298 Common - two-component sensor histidine kinase CHU_1899 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110639145 Common - conserved hypothetical protein; possible methyltransferase CHU_2762 26 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110639385 Common fabI enoyl-[acyl-carrier-protein] reductase (NADH) CHU_3011 163 COG0623 FabI, Enoyl- acyl-carrier-protein 110638405 Nonpathogen - hypothetical protein CHU_2006 3 None None None 110638352 Nonpathogen - hypothetical protein CHU_1953 1 None None None 110638522 Common acpS holo-[acyl-carrier protein] synthase CHU_2126 147 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 110637053 Common - hypothetical protein CHU_0633 30 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110637390 Nonpathogen - hypothetical protein CHU_0980 11 COG1572 COG1572, Uncharacterized conserved protein Function unknown 110640067 Common - hypothetical protein CHU_3701 5 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 110639837 Nonpathogen - hypothetical protein CHU_3470 1 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 110637900 Nonpathogen - hypothetical protein CHU_1496 2 COG1396 HipB, Predicted transcriptional regulators Transcription 110637852 Common ccmG thioredoxin family protein CHU_1448 162 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110640199 Common panD aspartate alpha-decarboxylase CHU_3834 130 COG0853 PanD, Aspartate 1-decarboxylase Coenzyme metabolism 110636945 Nonpathogen - hypothetical protein CHU_0525 1 None None None 110636507 Common rfaQ glycosyltransferase, family 9 CHU_0080 87 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 110639248 Common - cytochrome c-related protein CHU_2867 55 None None None 110638014 Common 3mgh 3-methyladenine DNA glycosylase CHU_1611 83 COG2094 Mpg, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 110639378 Nonpathogen - hypothetical protein CHU_3004 4 None None None 110640046 Common - conserved hypothetical protein; possible ABC transporter subunit CHU_3680 42 COG4422 COG4422, Bacteriophage protein gp37 Function unknown 110639514 Common map methionine aminopeptidase CHU_3141 249 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 110638147 Nonpathogen - hypothetical protein CHU_1747 1 None None None 110636580 Nonpathogen - ATPase involved in DNA repair; chromosome segregation ATPase CHU_0155 2 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 110637208 Common - hypothetical protein CHU_0788 24 None None None 110637495 Common fabG 3-oxoacyl-[acyl-carrier-protein] reductase CHU_1085 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110639948 Common - hypothetical protein CHU_3582 3 COG2968 COG2968, Uncharacterized conserved protein Function unknown 110636664 Common thiS sulfur transfer protein involved in thiamine biosynthesis CHU_0239 19 COG2104 ThiS, Sulfur transfer protein involved in thiamine biosynthesis Coenzyme metabolism 110639587 Common - hypothetical protein CHU_3214 3 None None None 110638893 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_2506 186 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 110637936 Common - cation-transporting ATPase CHU_1532 4 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 110638308 Common batC bacteroides aerotolerance operon protein CHU_1909 8 None None None 110637380 Common - probable proline hydroxylase CHU_0970 30 COG3751 EGL-9, Predicted proline hydroxylase Posttranslational modification, protein turnover, chaperones 110638924 Common tpn transposase, IS3 family CHU_2538 144 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 110639934 Common - hypothetical protein CHU_3568 26 None None None 110636672 Nonpathogen - hypothetical protein CHU_0247 2 None None None 110638359 Common - hypothetical protein CHU_1960 7 None None None 110637983 Common pphA serine/threonine specific protein phosphatase (protein phosphatase 1) CHU_1580 104 None None None 110637304 Common - a-glycosyltransferase, glycosyltransferase family 4 protein CHU_0890 225 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110639906 Common rcsC sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB CHU_3540 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110637270 Common - capsular polysaccharide biosynthesis protein CHU_0854 18 COG4421 COG4421, Capsular polysaccharide biosynthesis protein Carbohydrate transport and metabolism 110639878 Common - transcriptional regulator CHU_3512 62 COG2808 PaiB, Transcriptional regulator Transcription 110637192 Nonpathogen - hypothetical protein CHU_0772 1 None None None 110638760 Nonpathogen - hypothetical protein CHU_2369 1 None None None 110638219 Common deaD ATP-dependent RNA helicase protein CHU_1819 239 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110640112 Common ilvB acetolactate synthase, large subunit CHU_3746 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 110639320 Nonpathogen - hypothetical protein CHU_2945 1 None None None 110636726 Common - transcriptional regulator, ArsR family CHU_0302 90 COG0640 ArsR, Predicted transcriptional regulators Transcription 110636451 Nonpathogen tatA sec-independent protein translocase CHU_0024 10 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 110637515 Nonpathogen - hypothetical protein CHU_1106 1 None None None 110639371 Common - auxin-regulated protein CHU_2997 11 COG1021 EntE, Peptide arylation enzymes Secondary metabolites biosynthesis, transport, and catabolism 110638126 Nonpathogen - hypothetical protein CHU_1726 1 None None None 110638154 Nonpathogen - hypothetical protein CHU_1754 2 None None None 110638433 Common - hypothetical protein CHU_2037 2 None None None 110636971 Common - hypothetical protein CHU_0551 4 None None None 110639263 Common wzxC probable export protein CHU_2883 13 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 110637399 Common - phenazine-like biosynthesis protein CHU_0989 121 COG0384 COG0384, Predicted epimerase, PhzC/PhzF homolog General function prediction only 110637888 Nonpathogen - hypothetical protein CHU_1484 1 None None None 110636527 Common - hypothetical protein CHU_0100 4 None None None 110639880 Common - hypothetical protein CHU_3514 3 None None None 110639425 Nonpathogen - hypothetical protein CHU_3051 2 None None None 110639830 Common lpdA pyridine nucleotide-disulphide-related oxidoreductase CHU_3463 242 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 110637457 Common - sodium/solute symporter CHU_1047 101 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 110638540 Nonpathogen - hypothetical protein CHU_2144 1 None None None 110638289 Common - possible Zn-dependent protease CHU_1890 127 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 110639558 Nonpathogen - hypothetical protein CHU_3185 1 None None None 110636963 Common - RNA polymerase, ECF-type sigma factor CHU_0543 179 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110637575 Common - hypothetical protein CHU_1167 50 COG3391 COG3391, Uncharacterized conserved protein Function unknown 110639687 Nonpathogen - hypothetical protein CHU_3315 1 None None None 110637881 Nonpathogen - hypothetical protein CHU_1477 1 None None None 110639109 Common kdtA 3-deoxy-D-manno-octulosonic-acid transferase, glycosyltransferase family 30 protein CHU_2726 105 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 110638682 Nonpathogen - hypothetical protein CHU_2288 1 None None None 110638599 Common coxO cytochrome c oxidase, subunit III CHU_2203 71 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 110639764 Nonpathogen - hypothetical protein CHU_3395 1 None None None 110639803 Common - hypothetical protein CHU_3434 5 None None None 110639716 Common rcsC sensor histidine kinase with PAS signal sensor domains CHU_3347 221 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110639725 Nonpathogen - hypothetical protein CHU_3356 1 None None None 110637859 Common rhlE possible ATP-dependent RNA helicase CHU_1455 227 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110636883 Common ispA geranyltranstransferase (farnesyl-diphosphate synthase) CHU_0461 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 110637686 Nonpathogen - hypothetical protein CHU_1281 1 None None None 110638025 Common accB biotin carboxyl carrier protein of acetyl-CoA carboxylase CHU_1623 169 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 110639254 Common - hypothetical protein CHU_2874 14 None None None 110637997 Nonpathogen - hypothetical protein CHU_1594 3 COG1714 COG1714, Predicted membrane protein/domain Function unknown 110637774 Common nuoN NADH dehydrogenase I chain N CHU_1369 210 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 110636659 Nonpathogen - hypothetical protein CHU_0234 1 None None None 110637468 Common - hypothetical protein CHU_1058 24 None None None 110638055 Common - chromosome segregation ATPase; intracellular signalling protein CHU_1654 43 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 110637555 Nonpathogen - hypothetical protein CHU_1147 1 None None None 110636679 Common lytT response regulator CHU_0254 217 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 110637127 Nonpathogen - hypothetical protein CHU_0707 1 None None None 110637789 Nonpathogen - hypothetical protein CHU_1384 1 None None None 110640108 Common leuC isopropylmalate isomerase large subunit CHU_3742 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 110638689 Nonpathogen - hypothetical protein CHU_2295 1 None None None 110639405 Common - O-methyltransferase CHU_3031 99 COG4122 COG4122, Predicted O-methyltransferase General function prediction only 110639067 Common - hypothetical protein CHU_2682 7 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 110639829 Common - hypothetical protein CHU_3462 89 COG2308 COG2308, Uncharacterized conserved protein Function unknown 110640140 Common - conserved hypothetical protein, with TPR repeat CHU_3775 54 COG4995 COG4995, Uncharacterized protein conserved in bacteria Function unknown 110637357 Common ribF bifunctional protein: riboflavin kinase; FAD synthetase CHU_0947 211 COG0196 RibF, FAD synthase Coenzyme metabolism 110639206 Common rnhB ribonuclease HII (RNAse HII) CHU_2825 234 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 110637152 Nonpathogen - hypothetical protein CHU_0732 1 None None None 110638918 Common ftsE cell-division ATP-binding protein CHU_2531 249 COG2884 FtsE, Predicted ATPase involved in cell division Cell division and chromosome partitioning 110639365 Common - hypothetical protein CHU_2991 5 None None None 110637149 Common - hypothetical protein CHU_0729 24 COG3698 COG3698, Predicted periplasmic protein Function unknown 110638590 Common - ABC transporter, permease CHU_2194 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 110636524 Common rnpA RNase P protein, subunit A CHU_0097 12 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 110637813 Common - tryptophan 2,3-dioxygenase CHU_1409 40 COG3483 TDO2, Tryptophan 2,3-dioxygenase (vermilion) Amino acid transport and metabolism 110639158 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase CHU_2776 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 110638754 Nonpathogen - hypothetical protein CHU_2363 1 None None None 110640205 Common hflX GTP-binding protein, possible GTP1/OBG family CHU_3840 221 COG2262 HflX, GTPases General function prediction only 110640136 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_3770 210 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110637112 Common - Holliday junction resolvase-like protein CHU_0692 150 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 110637282 Common - hypothetical protein CHU_0866 5 None None None 110636862 Nonpathogen - hypothetical protein CHU_0440 6 COG4538 COG4538, Uncharacterized conserved protein Function unknown 110638342 Common - hypothetical protein CHU_1943 77 COG2128 COG2128, Uncharacterized conserved protein Function unknown 110638529 Common - hypothetical protein CHU_2133 50 COG1300 SpoIIM, Uncharacterized membrane protein Function unknown 110638672 Common - nucleotide-binding protein CHU_2278 107 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 110638639 Common - conserved hypothetical protein (possible two-component element) CHU_2243 22 COG3292 COG3292, Predicted periplasmic ligand-binding sensor domain Signal transduction mechanisms 110638226 Nonpathogen - hypothetical protein CHU_1826 2 None None None 110637742 Common arcB sensor-response protein with PAS domain CHU_1337 44 COG3283 TyrR, Transcriptional regulator of aromatic amino acids metabolism Transcription / Amino acid transport and metabolism 110637946 Common folC tetrahydrofolylpolyglutamate synthase (folylpolyglutamate synthetase) CHU_1542 219 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 110637018 Common nadD nicotinic acid mononucleotide adenyltransferase CHU_0598 189 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 110638272 Nonpathogen - hypothetical protein CHU_1873 1 None None None 110638578 Common ycdQ b-glycosyltransferase-related protein, glycosyltransferase family 2 protein CHU_2182 38 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110638641 Common yfhC cytosine/adenosine deaminase CHU_2245 4 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 110637580 Nonpathogen - hypothetical protein CHU_1172 1 None None None 110637370 Common fucP fucose permease CHU_0960 50 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 110636520 Common trxA thioredoxin CHU_0093 233 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 110640071 Common - hypothetical protein CHU_3705 5 None None None 110639822 Nonpathogen - hypothetical protein CHU_3455 2 None None None 110637119 Common murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl- D-alanyl-D-alanine synthetase) CHU_0699 208 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 110638616 Common - hypothetical protein CHU_2220 8 None None None 110638746 Common - hypothetical protein CHU_2355 31 COG4307 COG4307, Uncharacterized protein conserved in bacteria Function unknown 110636652 Common - hypothetical protein CHU_0227 33 None None None 110639786 Common - possible leucine aminopeptidase CHU_3417 9 COG2234 Iap, Predicted aminopeptidases General function prediction only 110639903 Common tpx thiol peroxidase CHU_3537 101 COG2077 Tpx, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110637021 Common rpoE RNA polymerase sigma factor RpoE CHU_0601 173 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110639793 Nonpathogen - hypothetical protein CHU_3424 1 None None None 110638291 Common - conserved hypothetical protein (probable membrane protein) CHU_1892 137 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 110636569 Common rluB pseudouridylate synthase (ribosomal large subunit pseudouridine synthase B) CHU_0143 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 110637655 Nonpathogen - hypothetical protein CHU_1250 1 None None None 110639623 Common - CHU large protein; uncharacterized CHU_3251 10 None None None 110637236 Nonpathogen - hypothetical protein CHU_0816 1 None None None 110639151 Common - conserved hypothetical protein; possible membrane export protein CHU_2768 37 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 110639889 Common - exonuclease of the beta-lactamase fold involved in RNA processing CHU_3523 62 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 110638238 Nonpathogen - hypothetical protein CHU_1838 1 None None None 110637309 Common - a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0895 205 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110636759 Common atpD F0F1 ATP synthase subunit beta CHU_0336 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 110638847 Common - conserved hypothetical protein (possible transporter) CHU_2459 106 COG1533 SplB, DNA repair photolyase DNA replication, recombination, and repair 110636448 Common - TPR-repeat-containing protein CHU_0021 116 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 110639763 Common ugd UDP-glucose 6-dehydrogenase CHU_3394 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 110638261 Common hisG ATP phosphoribosyltransferase CHU_1862 211 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 110639655 Common - transposase CHU_3283 9 None None None 110640159 Common bcsA naringenin-chalcone synthase CHU_3794 45 COG3424 BcsA, Predicted naringenin-chalcone synthase Secondary metabolites biosynthesis, transport, and catabolism 110639743 Common tdcF endoribonuclease, L-PSP family (translation initiation inhibitor) CHU_3374 186 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 110637103 Nonpathogen - hypothetical protein CHU_0683 1 None None None 110636829 Nonpathogen - hypothetical protein CHU_0406 2 None None None 110638567 Common tpn transposase CHU_2171 9 None None None 110639544 Common rplJ 50S ribosomal protein L10 CHU_3171 158 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 110638560 Common - peptidase, M48 family CHU_2164 3 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 110638810 Common - conserved hypothetical protein; possible NUDIX hydrolase CHU_2421 120 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 110636621 Common guaB IMP dehydrogenase/GMP reductase CHU_0196 243 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 110639010 Common pth peptidyl-tRNA hydrolase CHU_2625 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 110637785 Common nuoC NADH dehydrogenase I chain C CHU_1380 172 COG0852 NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit Energy production and conversion 110640062 Nonpathogen - hypothetical protein CHU_3696 1 None None None 110637317 Common - hypothetical protein CHU_0903 16 None None None 110637323 Common - possible haloacid dehalogenase-like hydrolase CHU_0909 52 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 110639504 Common ponA bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase, candidate murein polymerase, glycosyltransferase family 51 protein CHU_3131 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 110639845 Common - hypothetical protein CHU_3478 3 None None None 110638626 Common - hypothetical protein CHU_2230 5 None None None 110638064 Common rcsC sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB CHU_1663 220 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110636874 Common nrdB ribonucleoside-diphosphate reductase 1, beta subunit CHU_0452 155 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 110637963 Common - hypothetical protein CHU_1559 4 None None None 110637110 Nonpathogen - hypothetical protein CHU_0690 1 None None None 110639178 Common pgtB phosphoglycerate transport; protein for signal transmission CHU_2796 220 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 110638349 Nonpathogen - hypothetical protein CHU_1950 1 None None None 110638632 Common mutS DNA mismatch repair protein CHU_2236 157 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 110639058 Common hisS histidyl-tRNA synthetase CHU_2673 247 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110637956 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase CHU_1552 209 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 110639141 Common neuB N-acetylneuraminic acid synthetase CHU_2758 79 COG2089 SpsE, Sialic acid synthase Cell envelope biogenesis, outer membrane 110638926 Common - cyclic nucleotide binding regulatory protein CHU_2540 20 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110639302 Common yhhT permease CHU_2927 198 COG0628 PerM, Predicted permease General function prediction only 110636504 Nonpathogen - hypothetical protein CHU_0077 1 None None None 110638851 Common - hypothetical protein CHU_2464 4 None None None 110637494 Common - hypothetical protein CHU_1084 14 None None None 110636589 Nonpathogen - hypothetical protein CHU_0164 1 None None None 110636579 Nonpathogen - hypothetical protein CHU_0154 1 None None None 110637139 Common pheB 3-deoxy-7-phosphoheptulonate synthase CHU_0719 144 COG2876 AroA, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 110638105 Common tig peptidyl-prolyl cis-trans isomerase, trigger factor CHU_1705 199 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 110637379 Common fabA 3-hydroxydecanoyl-[acyl carrier protein] dehydratase CHU_0969 163 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 110640024 Common - acetyltransferase/carbonic anhydrase CHU_3658 199 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 110639445 Nonpathogen - hypothetical protein CHU_3072 1 None None None 110638549 Common - hypothetical protein CHU_2153 28 COG4275 COG4275, Uncharacterized conserved protein Function unknown 110637342 Common - a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0930 72 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110639975 Nonpathogen - hypothetical protein CHU_3609 1 None None None 110636478 Common tnpX site-specific recombinase CHU_0051 107 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 110636694 Nonpathogen - hypothetical protein CHU_0269 1 None None None 110637227 Nonpathogen - hypothetical protein CHU_0807 12 COG0730 COG0730, Predicted permeases General function prediction only 110638443 Nonpathogen - hypothetical protein CHU_2047 1 None None None 110637806 Common - hypothetical protein CHU_1402 79 COG1801 COG1801, Uncharacterized conserved protein Function unknown 110638661 Common - hypothetical protein CHU_2265 39 COG0645 COG0645, Predicted kinase General function prediction only 110637504 Common - hypothetical protein CHU_1094 8 COG3324 COG3324, Predicted enzyme related to lactoylglutathione lyase General function prediction only 110639284 Nonpathogen - hypothetical protein CHU_2909 1 None None None 110637695 Common - integral membrane protein CHU_1290 78 COG1814 COG1814, Uncharacterized membrane protein Function unknown 110637713 Common maf Maf-like protein CHU_1308 193 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 110638796 Common - RNA binding protein CHU_2407 61 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 110637038 Common - hypothetical protein CHU_0618 3 None None None 110639447 Common era GTP-binding protein Era CHU_3074 217 COG1159 Era, GTPase General function prediction only 110640128 Common - fatty acid desaturase CHU_3762 42 COG3239 DesA, Fatty acid desaturase Lipid metabolism 110638336 Common - hypothetical protein CHU_1937 2 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 110639332 Common - hypothetical protein CHU_2957 4 COG2183 Tex, Transcriptional accessory protein Transcription 110640078 Common - hypothetical protein CHU_3712 132 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 110637350 Common - CHU large protein; uncharacterized CHU_0938 87 None None None 110638717 Nonpathogen yiaD possible outer membrane protein CHU_2324 1 None None None 110638207 Nonpathogen - hypothetical protein CHU_1807 1 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 110637854 Nonpathogen - hypothetical protein CHU_1450 4 None None None 110639393 Common - hypothetical protein CHU_3019 12 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 110637520 Nonpathogen - hypothetical protein CHU_1111 3 None None None 110639310 Common - hypothetical protein CHU_2935 6 COG1476 COG1476, Predicted transcriptional regulators Transcription 110638538 Common - conserved hypothetical protein with leucine-rich domain CHU_2142 36 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 110638829 Common coaE dephospho-CoA kinase CHU_2441 192 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 110637319 Nonpathogen - hypothetical protein CHU_0905 1 None None None 110639217 Common katE catalase CHU_2836 127 COG0753 KatE, Catalase Inorganic ion transport and metabolism 110637749 Nonpathogen - hypothetical protein CHU_1344 1 None None None 110638831 Common yajC preprotein translocase subunit YajC CHU_2443 164 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 110639912 Common cpxA probable sensor protein (histidine protein kinase), acting on arcA CHU_3546 220 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110636641 Nonpathogen - hypothetical protein CHU_0216 1 None None None 110638169 Nonpathogen - hypothetical protein CHU_1769 1 None None None 110639616 Nonpathogen - hypothetical protein CHU_3243 5 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 110636990 Common - esterase CHU_0570 51 COG3545 COG3545, Predicted esterase of the alpha/beta hydrolase fold General function prediction only 110639506 Common eno phosphopyruvate hydratase (enolase) CHU_3133 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 110636893 Nonpathogen - hypothetical protein CHU_0471 1 None None None 110637965 Common tpn50 outer membrane protein, OmpA family CHU_1561 168 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110636483 Common - hypothetical protein CHU_0056 22 None None None 110638868 Nonpathogen - hypothetical protein CHU_2481 1 None None None 110638117 Common lepA GTP-binding protein LepA CHU_1717 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 110638619 Common acnA aconitate hydratase CHU_2223 223 COG1048 AcnA, Aconitase A Energy production and conversion 110637977 Common lgtD b-glycosyltransferase, glycosyltransferase family 2 protein CHU_1573 169 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110638603 Common ctaC heme/copper-type cytochrome/quinol oxidase, subunit 2 CHU_2207 137 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 110639919 Nonpathogen - hypothetical protein CHU_3553 1 None None None 110637279 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_0863 50 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110639617 Nonpathogen - hypothetical protein CHU_3244 1 None None None 110636618 Common - conserved hypothetical protein (possible anti-sigma factor) CHU_0193 19 COG2172 RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) Signal transduction mechanisms 110638445 Common rsaD ABC transporter, ATP-binding/permease CHU_2049 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 110638086 Common - conserved hypothetical protein with pentapeptide repeats CHU_1685 74 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 110640160 Common - SAM-dependent methyltransferase CHU_3795 13 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 110637501 Common hdhA 7-alpha-hydroxysteroid dehydrogenase CHU_1091 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110639457 Common ppiC peptidyl-prolyl cis-trans isomerase C (rotamase C) CHU_3084 120 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 110639027 Common - hypothetical protein CHU_2642 25 None None None 110636750 Common fabG 3-oxoacyl-[acyl-carrier-protein] reductase CHU_0327 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110637823 Nonpathogen - hypothetical protein CHU_1419 1 None None None 110638610 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase CHU_2214 199 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 110638471 Nonpathogen - hypothetical protein CHU_2075 1 None None None 110637724 Common - possible nitrate/nitrite transporter CHU_1319 139 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 110637570 Common - CHU large protein; candidate pectate lyase, polysaccharide lyase family 1 protein CHU_1162 107 COG3866 PelB, Pectate lyase Carbohydrate transport and metabolism 110638697 Nonpathogen - hypothetical protein CHU_2303 1 None None None 110639050 Common uvrD ATP-dependent exoDNAse (exonuclease V) CHU_2665 94 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 110637403 Common - hypothetical protein CHU_0993 54 COG3781 COG3781, Predicted membrane protein Function unknown 110638324 Common - transcriptional regulator CHU_1925 14 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110636884 Common rnr exoribonuclease II CHU_0462 192 COG0557 VacB, Exoribonuclease R Transcription 110638535 Common - CHU large protein, possible SAP or adhesin AidA-related CHU_2139 28 None None None 110637914 Common zntA cation-transporting ATPase; possible zinc-transporting ATPase CHU_1510 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 110636600 Common uvrC excinuclease ABC, subunit C CHU_0175 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 110639419 Common recA DNA recombination protein CHU_3045 214 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 110637740 Common - CHU large protein; endoglucanase-related protein, glucosyl hydrolase family 9 protein CHU_1335 30 None None None 110637045 Nonpathogen - hypothetical protein CHU_0625 1 None None None 110639555 Common pqqL zinc protease CHU_3182 197 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 110639534 Common rplD 50S ribosomal protein L4 CHU_3161 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 110636767 Nonpathogen - hypothetical protein CHU_0344 2 None None None 110640002 Nonpathogen - hypothetical protein CHU_3636 1 None None None 110639363 Common - short-chain alcohol dehydrogenase/reductase CHU_2989 157 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110636602 Common sprE gliding motility-related protein; TPR repeat-containing protein CHU_0177 9 None None None 110636698 Common metC O-acetylhomoserine sulfhydrylase CHU_0274 206 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 110638558 Common yjeP probable periplasmic binding protein; possible mechanosensitive ion channel component CHU_2162 187 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 110637261 Common wza probable polysaccharide export protein CHU_0845 27 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 110639201 Nonpathogen - hypothetical protein CHU_2820 1 None None None 110637268 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_0852 179 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 110639852 Nonpathogen - hypothetical protein CHU_3486 3 None None None 110639671 Common - hypothetical protein CHU_3299 7 None None None 110636570 Common - hypothetical protein CHU_0144 2 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 110638003 Common pfkB 6-phosphofructokinase II CHU_1600 113 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 110639950 Nonpathogen - hypothetical protein CHU_3584 1 None None None 110638270 Common marC multiple antibiotic resistance protein CHU_1871 143 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 110637822 Common - hypothetical protein CHU_1418 74 COG2989 COG2989, Uncharacterized protein conserved in bacteria Function unknown 110639065 Common adhB pyruvate dehydrogenase E1 component CHU_2680 216 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 110637191 Nonpathogen - hypothetical protein CHU_0771 1 None None None 110638582 Common - acyltransferase CHU_2186 115 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 110636682 Common - conserved hypothetical protein; possible sulfite reductase/membrane protein CHU_0257 60 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 110636480 Common dhaL NAD+-dependent aldehyde dehydrogenase CHU_0053 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 110637519 Common - hypothetical protein CHU_1110 17 COG3832 COG3832, Uncharacterized conserved protein Function unknown 110639868 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA CHU_3502 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 110638186 Common pnp polynucleotide phosphorylase/polyadenylase CHU_1786 238 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 110636515 Common - conserved hypothetical protein; possible transmembrane protein CHU_0088 63 COG2928 COG2928, Uncharacterized conserved protein Function unknown 110639641 Nonpathogen - hypothetical protein CHU_3269 1 None None None 110638364 Common atoC response regulatory protein, sigma 54 related CHU_1965 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110639707 Common - conserved hypothetical protein (predicted membrane-spanning protein) CHU_3338 21 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 110637649 Common - hypothetical protein CHU_1244 34 COG4095 COG4095, Uncharacterized conserved protein Function unknown 110639959 Nonpathogen - hypothetical protein CHU_3593 1 None None None 110639227 Common - hypothetical protein CHU_2846 2 None None None 110637615 Nonpathogen - hypothetical protein CHU_1209 1 None None None 110638490 Common - hypothetical protein CHU_2094 20 None None None 110636553 Common dapF diaminopimelate epimerase CHU_0127 198 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 110637487 Common - hypothetical protein CHU_1077 14 None None None 110638517 Common - SAM-dependent methyltransferase CHU_2121 29 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 110638673 Common - phoH-related protein CHU_2279 199 COG1875 COG1875, Predicted ATPase related to phosphate starvation-inducible protein PhoH Signal transduction mechanisms 110636847 Nonpathogen - hypothetical protein CHU_0424 1 None None None 110638941 Common - hypothetical protein CHU_2555 8 None None None 110638421 Common dapD 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase CHU_2022 153 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 110638365 Common nrtD ABC type nitrate transporter, ATP-binding protein CHU_1966 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 110638198 Common - hypothetical protein CHU_1798 3 None None None 110639102 Nonpathogen - hypothetical protein CHU_2719 1 None None None 110637664 Common livF branched-chain amino acid ABC transporter, ATP-binding protein CHU_1259 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 110639585 Nonpathogen - hypothetical protein CHU_3212 1 None None None 110640187 Common phoU phosphate regulatory protein CHU_3822 197 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 110637091 Common ychM sulfate transporter CHU_0671 161 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 110638542 Nonpathogen - hypothetical protein CHU_2146 1 None None None 110637079 Common fimZ fimbrial Z protein; probable signal transducer CHU_0659 183 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 110638168 Common - hypothetical protein CHU_1768 5 None None None 110637585 Nonpathogen - hypothetical protein CHU_1177 1 None None None 110637846 Common pepN aminopeptidase N CHU_1442 47 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 110636774 Nonpathogen - hypothetical protein CHU_0351 1 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 110638020 Nonpathogen - hypothetical protein CHU_1617 2 None None None 110638379 Common - siderophore-interacting protein CHU_1980 10 COG2375 ViuB, Siderophore-interacting protein Inorganic ion transport and metabolism 110638476 Common - sensor histidine kinase/response regulator fusion protein CHU_2080 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110639972 Common fucP fucose permease CHU_3606 47 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 110636436 Common dnaQ DNA polymerase III, epsilon subunit CHU_0009 121 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 110638110 Common ompA peptidoglycan-associated lipoprotein, OmpA family CHU_1710 169 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110639354 Common ldhA D-lactate dehydrogenase CHU_2980 227 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 110638865 Common - hypothetical protein CHU_2478 4 None None None 110640172 Nonpathogen - hypothetical protein CHU_3807 1 None None None 110638922 Common cca tRNA adenylyltransferase (tRNA nucleotidyl transferase) CHU_2535 212 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 110637365 Common folE GTP cyclohydrolase I CHU_0955 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 110637972 Common - hypothetical protein CHU_1568 4 None None None 110640010 Common - hypothetical protein CHU_3644 143 COG1354 COG1354, Uncharacterized conserved protein Function unknown 110639162 Common - hypothetical protein CHU_2780 2 None None None 110640011 Common - transglutaminase-like enzyme; cysteine protease CHU_3645 25 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 110639477 Nonpathogen - hypothetical protein CHU_3104 1 None None None 110639694 Common - hypothetical protein CHU_3322 3 None None None 110639185 Nonpathogen - hypothetical protein CHU_2804 1 COG4700 COG4700, Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats Function unknown 110638484 Common - hypothetical protein CHU_2088 16 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110640129 Common - cyclic nucleotide binding regulatory protein CHU_3763 23 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110638734 Common topA DNA topoisomerase type I (omega protein) CHU_2343 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 110638884 Common - conserved hypothetical protein (possible acetyltransferase, GNAT family) CHU_2497 27 COG0456 RimI, Acetyltransferases General function prediction only 110637064 Nonpathogen - hypothetical protein CHU_0644 1 None None None 110636858 Nonpathogen - hypothetical protein CHU_0436 1 None None None 110636835 Nonpathogen - hypothetical protein CHU_0412 1 None None None 110637631 Common - hydrolase, haloacid dehalogenase-like family CHU_1225 117 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 110638252 Nonpathogen - hypothetical protein CHU_1852 1 None None None 110638953 Common - hypothetical protein CHU_2567 42 COG3530 COG3530, Uncharacterized protein conserved in bacteria Function unknown 110637565 Common - CHU large protein; candidate rhamnogalacturonan lyase, polysaccharide lyase family 11 protein CHU_1157 79 None None None 110637085 Common - heme transport/degradation factor CHU_0665 33 COG3720 HemS, Putative heme degradation protein Inorganic ion transport and metabolism 110638998 Common purF amidophosphoribosyltransferase CHU_2612 231 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 110639297 Common - CHU large protein; uncharacterized CHU_2922 24 None None None 110639169 Common phnP metal-dependent hydrolase CHU_2787 100 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 110636791 Common gltP glutamate-aspartate symport protein CHU_0368 164 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 110638257 Common - hypothetical protein CHU_1858 15 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 110637765 Common fixB electron transfer flavoprotein, alpha subunit CHU_1360 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 110638947 Common spoOJ chromosome partitioning protein CHU_2561 188 COG1475 Spo0J, Predicted transcriptional regulators Transcription 110637170 Common - N-acetylmuramoyl-L-alanine amidase CHU_0750 173 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 110639408 Common pepP Xaa-Pro aminopeptidase CHU_3034 202 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 110639129 Common ftsI cell division protein, penicillin-binding protein CHU_2746 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 110638913 Common cinA competence-damage inducible protein CHU_2526 211 COG1058 CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA General function prediction only 110638372 Common - hypothetical protein CHU_1973 11 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110639455 Common - hypothetical protein CHU_3082 33 None None None 110636495 Common adk adenylate kinase CHU_0068 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 110638730 Nonpathogen tolA membrane spanning protein, required for outer membrane integrity CHU_2339 1 None None None 110638875 Nonpathogen - hypothetical protein CHU_2488 2 None None None 110639013 Common kduD 2, 4-dienoyl-CoA reductase (NADPH)-related protein CHU_2628 230 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110638045 Common thrS threonine--tRNA ligase (threonine tRNA synthetase) CHU_1643 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110638062 Common gdh glucose 1-dehydrogenase CHU_1661 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110636982 Common pys phytoene dehydrogenase CHU_0562 57 COG1233 COG1233, Phytoene dehydrogenase and related proteins Secondary metabolites biosynthesis, transport, and catabolism 110639180 Common zraS sensor kinase of Zn/Pb responsive two-component regulatory system CHU_2799 210 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 110638178 Common trxB thioredoxin-disulfide reductase CHU_1778 247 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 110639040 Common batA BatA-like protein, aerotolerance-related CHU_2655 70 COG1240 ChlD, Mg-chelatase subunit ChlD Coenzyme metabolism 110636989 Nonpathogen - conserved hypothetical protein, with TPR repeat CHU_0569 7 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 110639094 Common ubiE ubiquinone/menaquinone biosynthesis methyltransferase CHU_2710 219 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110639485 Nonpathogen - hypothetical protein CHU_3112 2 None None None 110638030 Common ksgA dimethyladenosine transferase CHU_1628 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 110639195 Nonpathogen - hypothetical protein CHU_2814 1 None None None 110637292 Common - CHU large protein; uncharacterized CHU_0878 18 None None None 110637877 Nonpathogen - hypothetical protein CHU_1473 1 None None None 110638039 Common barA sensor histidine kinase CHU_1637 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110639756 Common yraL methyltransferase CHU_3387 210 COG0313 COG0313, Predicted methyltransferases General function prediction only 110639432 Common - hypothetical protein CHU_3058 2 None None None 110639666 Common trpF phosphoribosylanthranilate isomerase CHU_3294 179 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 110637706 Nonpathogen - hypothetical protein CHU_1301 1 None None None 110638820 Common - hypothetical protein CHU_2431 21 COG3591 COG3591, V8-like Glu-specific endopeptidase Amino acid transport and metabolism 110639113 Common - permease CHU_2730 32 COG3329 COG3329, Predicted permease General function prediction only 110640048 Common recG ATP-dependent DNA helicase CHU_3682 225 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 110636978 Common - hypothetical protein CHU_0558 5 None None None 110638310 Common - conserved hypothetical protein with multiple MORN variant repeat domains CHU_1911 30 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 110638071 Common murI L-alanine-DL-glutamate epimerase CHU_1670 83 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 110639136 Nonpathogen - hypothetical protein CHU_2753 6 None None None 110640196 Common - hypothetical protein CHU_3831 42 COG2738 COG2738, Predicted Zn-dependent protease General function prediction only 110638315 Common - tRNA and rRNA methylase CHU_1916 192 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 110637167 Common - hypothetical protein CHU_0747 2 None None None 110639494 Nonpathogen - hypothetical protein CHU_3121 2 None None None 110637417 Common pyrC dihydroorotase CHU_1007 209 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 110637437 Common - CHU large protein; uncharacterized CHU_1027 22 None None None 110637734 Common moeA molybdopterin biosynthesis protein CHU_1329 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 110638990 Nonpathogen - hypothetical protein CHU_2604 1 None None None 110639324 Common gcr site-specific recombinase CHU_2949 59 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 110639633 Common - SAM-dependent methyltransferase CHU_3261 137 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 110638565 Common tpn transposase CHU_2169 105 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 110639524 Common rplX 50S ribosomal protein L24 CHU_3151 212 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 110639076 Common - hypothetical protein CHU_2691 107 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 110639132 Common - conserved hypothetical protein, mraZ-like CHU_2749 140 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 110638277 Common - hypothetical protein CHU_1878 3 None None None 110638284 Common rhlE possible ATP-dependent RNA helicase CHU_1885 237 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110637642 Common - chemotaxis response regulator (methyltransferase) CHU_1237 222 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 110639922 Nonpathogen - hypothetical protein CHU_3556 1 None None None 110639279 Common - hypothetical protein CHU_2901 6 None None None 110638410 Nonpathogen - hypothetical protein CHU_2011 1 COG4103 COG4103, Uncharacterized protein conserved in bacteria Function unknown 110637537 Nonpathogen - hypothetical protein CHU_1129 1 None None None 110638707 Common arr rifampin ADP-ribosylating transferase CHU_2313 11 None None None 110637187 Common - CHU large protein; uncharacterized CHU_0767 27 None None None 110639897 Common - hypothetical protein CHU_3531 5 None None None 110637372 Common comB cold shock protein CHU_0962 99 COG1278 CspC, Cold shock proteins Transcription 110637294 Common wzc tyrosine-protein kinase CHU_0880 166 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 110639518 Common rpsE 30S ribosomal protein S5 CHU_3145 248 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 110639265 Common wzc possible tyrosine-protein kinase CHU_2885 97 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 110639516 Common rplO 50S ribosomal protein L15 CHU_3143 211 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 110639776 Common - hypothetical protein CHU_3407 10 None None None 110637999 Common - hypothetical protein CHU_1596 11 None None None 110637985 Nonpathogen - hypothetical protein CHU_1582 1 None None None 110637767 Nonpathogen tolA membrane spanning protein, required for outer membrane integrity CHU_1362 1 None None None 110637938 Nonpathogen - hypothetical protein CHU_1534 1 None None None 110636662 Common - hypothetical protein CHU_0237 2 None None None 110640060 Nonpathogen - hypothetical protein CHU_3694 1 None None None 110637211 Common - hypothetical protein CHU_0791 22 None None None 110639932 Nonpathogen - hypothetical protein CHU_3566 1 None None None 110637990 Common hslV ATP-dependent protease peptidase subunit CHU_1587 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 110636623 Common ybiL probable outer membrane receptor for iron transport CHU_0198 94 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110637206 Nonpathogen - hypothetical protein CHU_0786 1 None None None 110639929 Common - Fe2+-dicitrate sensor, membrane component CHU_3563 34 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 110638179 Nonpathogen - hypothetical protein CHU_1779 1 None None None 110638142 Common - hypothetical protein CHU_1742 3 None None None 110639886 Common - Na+/H+-exchanging protein (Na+/H+ antiporter) CHU_3520 204 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 110639423 Common dfr dihydrofolate reductase CHU_3049 49 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 110638393 Nonpathogen - hypothetical protein CHU_1994 1 None None None 110639908 Nonpathogen - hypothetical protein CHU_3542 9 None None None 110637306 Common - acyltransferase family protein CHU_0892 3 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 110637016 Common - hypothetical protein CHU_0596 5 None None None 110638940 Common - hypothetical protein CHU_2554 6 COG3832 COG3832, Uncharacterized conserved protein Function unknown 110638743 Nonpathogen - hypothetical protein CHU_2352 1 None None None 110636842 Common - tonB-related protein CHU_0419 13 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 110636724 Common manC mannose-1-phosphate guanyltransferase CHU_0300 161 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 110637812 Common caiA acyl-CoA dehydrogenase CHU_1408 159 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110637349 Common proC pyrroline-5-carboxylate reductase CHU_0937 216 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 110639208 Nonpathogen - hypothetical protein CHU_2827 1 None None None 110636778 Common lpcA phosphoheptose isomerase CHU_0355 125 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 110639801 Common - conserved hypothetical protein; possible glucosidase CHU_3432 26 None None None 110637868 Nonpathogen - hypothetical protein CHU_1464 1 None None None 110638630 Nonpathogen - hypothetical protein CHU_2234 1 None None None 110639577 Nonpathogen - hypothetical protein CHU_3204 1 None None None 110636721 Common recQ ATP-dependent DNA helicase CHU_0297 217 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 110638249 Nonpathogen - hypothetical protein CHU_1849 1 None None None 110639661 Common lysA diaminopimelate decarboxylase CHU_3289 217 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 110637553 Common yegM possible membrane protein CHU_1145 161 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110638651 Common - hypothetical protein CHU_2255 52 COG2268 COG2268, Uncharacterized protein conserved in bacteria Function unknown 110640190 Common - geranylgeranylglyceryl phosphate synthase-like protein CHU_3825 36 COG1646 COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold General function prediction only 110638806 Common - glutamine-dependent NAD(+) synthetase CHU_2417 156 COG0171 NadE, NAD synthase Coenzyme metabolism 110640039 Common - hypothetical protein CHU_3673 3 None None None 110639964 Common glnB nitrogen regulatory protein P-II CHU_3598 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 110639589 Common - two-component response regulator, CheY-like CHU_3216 20 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110638159 Common menD bifunctional menaquinone biosynthesis protein: 2-oxoglutarate decarboxylase; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase CHU_1759 108 COG1165 MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Coenzyme metabolism 110637609 Nonpathogen - hypothetical protein CHU_1201 1 None None None 110636678 Common - hypothetical protein CHU_0253 17 None None None 110637607 Common yggB mechanosensitive ion channel component CHU_1199 172 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 110636587 Common - cation efflux system protein CHU_0162 135 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110639985 Common - conserved hypothetical protein, possible gat-related CHU_3619 150 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 110637389 Common asnC transcriptional regulator, AsnC family CHU_0979 156 COG1522 Lrp, Transcriptional regulators Transcription 110638100 Common ybgR possible cation efflux system protein CHU_1700 190 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 110637183 Common - hypothetical protein CHU_0763 3 None None None 110636741 Common atoS sensor histidine kinase CHU_0317 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110640080 Nonpathogen - hypothetical protein CHU_3714 1 None None None 110637154 Common rluD ribosomal large subunit pseudouridylate synthase CHU_0734 13 None None None 110639373 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_2999 171 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110637340 Common rfaG a-glycosyltransferase, glycosyltransferase family 4 protein CHU_0928 197 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110636748 Common sotB sugar efflux transporter CHU_0325 195 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 110637455 Common recR recombination protein CHU_1045 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 110638478 Common cheY two-component response regulator, cheY-like CHU_2082 155 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 110636966 Common ragA outer membrane receptor; ragA protein CHU_0546 16 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110636823 Common otsA candidate bifunctional trehalose-6-phosphate synthase/trehalose-6-phosphate phosphatase, glycosyltransferase family 20 protein CHU_0400 99 COG0380 OtsA, Trehalose-6-phosphate synthase Carbohydrate transport and metabolism 110637857 Common - hypothetical protein CHU_1453 71 COG1432 COG1432, Uncharacterized conserved protein Function unknown 110637738 Common folE GTP cyclohydrolase I CHU_1333 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 110637132 Nonpathogen - hypothetical protein CHU_0712 1 None None None 110639582 Common - hypothetical protein CHU_3209 2 None None None 110640152 Common xylR transcriptional regulator, AraC family CHU_3787 147 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 110639820 Common mfd transcription-repair coupling factor CHU_3453 222 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 110639970 Common serS seryl-tRNA synthetase CHU_3604 245 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 110639231 Nonpathogen - CHU large protein; uncharacterized CHU_2850 3 None None None 110639866 Common - anti-sigma regulatory factor CHU_3500 42 COG2172 RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) Signal transduction mechanisms 110638629 Common rsaD ABC-type lipoprotein releasing system, ATP-binding protein CHU_2233 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 110638066 Common - hypothetical protein CHU_1665 6 None None None 110639727 Nonpathogen - hypothetical protein CHU_3358 1 None None None 110639565 Common - hypothetical protein CHU_3192 3 None None None 110639621 Common - CHU large protein; uncharacterized CHU_3248 13 None None None 110636462 Nonpathogen - hypothetical protein CHU_0035 1 None None None 110639087 Common aroQ 3-dehydroquinate dehydratase CHU_2703 169 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 110639070 Common - hypothetical protein CHU_2685 6 None None None 110636949 Common - hypothetical protein CHU_0529 5 None None None 110638419 Common - hypothetical protein CHU_2020 7 None None None 110638228 Common groEL 60 kDa chaperonin CHU_1828 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 110639609 Common - CDP-diacylglycerol-serine-O-phosphatidyltransferase CHU_3236 149 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 110639156 Nonpathogen - hypothetical protein CHU_2774 1 None None None 110636923 Common - restriction endonuclease CHU_0501 37 COG3440 COG3440, Predicted restriction endonuclease Defense mechanisms 110638121 Common - hypothetical protein CHU_1721 4 None None None 110637715 Common kbl 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) CHU_1310 190 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 110638886 Common efp elongation factor P (EF-P) CHU_2499 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 110639187 Common - hypothetical protein CHU_2806 10 COG1510 COG1510, Predicted transcriptional regulators Transcription 110637780 Common nuoH NADH dehydrogenase I chain H CHU_1375 192 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 110639680 Common mreB rod shape-determining protein CHU_3308 234 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 110636906 Common - hypothetical protein CHU_0484 7 None None None 110639383 Common - S-adenosylmethionine/tRNA ribosyltransferase-isomerase CHU_3009 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 110639001 Common nuoL NADH dehydrogenase I chain L CHU_2616 207 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 110637674 Common hisC histidinol-phosphate transaminase CHU_1269 237 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 110639832 Nonpathogen - hypothetical protein CHU_3465 1 None None None 110638637 Common - hypothetical protein CHU_2241 14 None None None 110638824 Common valS valyl-tRNA synthetase CHU_2435 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110638354 Common smpB SsrA-binding protein CHU_1955 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 110636702 Common - hypothetical protein CHU_0278 9 None None None 110639736 Nonpathogen - hypothetical protein CHU_3367 1 None None None 110636709 Common - integral membrane protein CHU_0285 75 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 110638845 Common - hypothetical protein CHU_2457 7 None None None 110639761 Common wecC UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase CHU_3392 206 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 110636940 Common - hypothetical protein CHU_0520 2 None None None 110639068 Nonpathogen - hypothetical protein CHU_2683 1 None None None 110638000 Common - hypothetical protein CHU_1597 193 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 110639748 Common - hypothetical protein CHU_3379 122 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 110638465 Nonpathogen - hypothetical protein CHU_2069 1 None None None 110638741 Nonpathogen - hypothetical protein CHU_2350 1 None None None 110637008 Nonpathogen - hypothetical protein CHU_0588 1 None None None 110639553 Common ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase CHU_3180 189 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 110638984 Nonpathogen - hypothetical protein CHU_2598 1 None None None 110638306 Nonpathogen - hypothetical protein CHU_1907 1 None None None 110639850 Common cpsG phosphomannomutase CHU_3484 241 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 110639653 Common accD acetyl-CoA carboxylase, beta subunit CHU_3281 219 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 110639887 Common fadL long-chain fatty acid transport protein, outer membrane protein CHU_3521 81 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 110638675 Nonpathogen - hypothetical protein CHU_2281 1 None None None 110637473 Common - fatty-acid desaturase CHU_1063 47 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 110638231 Nonpathogen - hypothetical protein CHU_1831 1 None None None 110636939 Nonpathogen - hypothetical protein CHU_0519 1 None None None 110638385 Common kdpD sensor kinase for the kdp operon CHU_1986 90 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 110639894 Common lemA LemA-like protein CHU_3528 130 COG1704 LemA, Uncharacterized conserved protein Function unknown 110639546 Common rplK 50S ribosomal protein L11 CHU_3173 247 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 110637542 Common - hypothetical protein CHU_1134 3 None None None 110638156 Common gpm phosphoglycerate mutase-like protein CHU_1756 112 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 110639304 Nonpathogen - hypothetical protein CHU_2929 1 None None None 110636951 Common - CHU large protein; uncharacterized CHU_0531 33 None None None 110636453 Common mltD peptidoglycan-binding lytic transglycosylase CHU_0026 147 COG1388 LytE, FOG: LysM repeat Cell envelope biogenesis, outer membrane 110636510 Common pyrR uracil phosphoribosyltransferase; pyrimidine operon attenuation protein CHU_0083 109 COG2065 PyrR, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase Nucleotide transport and metabolism 110637902 Common - hypothetical protein CHU_1498 2 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 110637234 Nonpathogen - hypothetical protein CHU_0814 1 None None None 110637454 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_1044 167 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 110639522 Common rpsN 30S ribosomal protein S14 CHU_3149 211 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 110636973 Common ragA tonB-dependent outer membrane receptor CHU_0553 14 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110637070 Nonpathogen - hypothetical protein CHU_0650 1 None None None 110637709 Common - hypothetical protein CHU_1304 5 None None None 110638403 Common pfs 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase CHU_2004 90 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 110637688 Common - hypothetical protein CHU_1283 78 COG0433 COG0433, Predicted ATPase General function prediction only 110637321 Common - putative colanic acid biosynthesis acetyltransferase WcaF CHU_0907 89 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 110636930 Common nuoI NADH dehydrogenase I chain A CHU_0509 145 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 110636757 Common - sensor histidine kinase CHU_0334 206 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110639061 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_2676 153 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 110637590 Common - conserved hypothetical protein; possible acetyltransferase CHU_1182 12 COG0456 RimI, Acetyltransferases General function prediction only 110640147 Nonpathogen - hypothetical protein CHU_3782 1 None None None 110638719 Common - conserved hypothetical protein; possible lactoylglutathione lyase CHU_2327 40 COG3607 COG3607, Predicted lactoylglutathione lyase General function prediction only 110637986 Common - hypothetical protein CHU_1583 29 COG1416 COG1416, Uncharacterized conserved protein Function unknown 110638862 Common - hypothetical protein CHU_2475 10 COG3795 COG3795, Uncharacterized protein conserved in bacteria Function unknown 110638597 Common - hypothetical protein CHU_2201 6 COG5605 COG5605, Predicted small integral membrane protein Function unknown 110636872 Common tpn transposase CHU_0450 13 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 110638792 Nonpathogen - hypothetical protein CHU_2403 1 None None None 110638007 Common - hypothetical protein CHU_1604 102 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 110636532 Common yvqE membrane-associated sensory histidine kinase-like ATPase CHU_0106 150 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 110636502 Common thrC threonine synthase CHU_0075 157 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 110637147 Nonpathogen - hypothetical protein CHU_0727 1 None None None 110639073 Common typA GTP-binding elongation factor CHU_2688 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 110636692 Nonpathogen - hypothetical protein CHU_0267 2 None None None 110639547 Common nusG transcription antitermination protein CHU_3174 215 COG0250 NusG, Transcription antiterminator Transcription 110637328 Common yneI aldehyde dehydrogenase CHU_0914 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 110637423 Common yhaH probable membrane protein CHU_1013 56 COG3152 COG3152, Predicted membrane protein Function unknown 110639193 Nonpathogen - hypothetical protein CHU_2812 1 None None None 110636446 Common dut deoxyuridine 5'-triphosphate nucleotidohydrolase CHU_0019 181 COG0756 Dut, dUTPase Nucleotide transport and metabolism 110638263 Common - hypothetical protein CHU_1864 107 COG2135 COG2135, Uncharacterized conserved protein Function unknown 110638838 Common - hydrolase with alpha/beta fold CHU_2450 72 COG2267 PldB, Lysophospholipase Lipid metabolism 110637573 Common - hypothetical protein CHU_1165 4 None None None 110637312 Common - acyltransferase family protein CHU_0898 107 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 110639568 Common gspD type II general secretion pathway (GSP) D protein CHU_3195 83 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 110639167 Common rcsC sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB CHU_2785 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110639608 Common ycbL metallo-beta-lactamase family protein CHU_3235 216 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 110636522 Common - protease CHU_0095 49 COG3975 COG3975, Predicted protease with the C-terminal PDZ domain General function prediction only 110638133 Common - hypothetical protein CHU_1733 3 None None None 110637392 Nonpathogen - hypothetical protein CHU_0982 1 None None None 110637910 Common - cation-transporting ATPase CHU_1506 6 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 110639403 Common barA two-component sensor histidine kinase CHU_3029 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110637907 Common - hypothetical protein CHU_1503 13 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110638589 Common - oxidoreductase, short chain dehydrogenase/reductase family CHU_2193 238 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110639827 Common - proteasome-type protease CHU_3460 54 COG3484 COG3484, Predicted proteasome-type protease Posttranslational modification, protein turnover, chaperones 110638916 Common talAB putative translaldolase CHU_2529 145 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 110638777 Common - choloylglycine hydrolase family protein CHU_2387 51 COG3049 COG3049, Penicillin V acylase and related amidases Cell envelope biogenesis, outer membrane 110638499 Common cel endoglucanase, glycoside hydrolase family 5 protein CHU_2103 16 COG2730 BglC, Endoglucanase Carbohydrate transport and metabolism 110638360 Common mscL mechanosensitive channel CHU_1961 137 COG1970 MscL, Large-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 110637355 Common gldC conserved hypothetical protein; possible motility-related protein CHU_0945 3 None None None 110638628 Common - ATP-dependent DNA helicase CHU_2232 233 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 110637661 Common livH branched-chain amino acid ABC transporter, permease component CHU_1256 163 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 110639814 Nonpathogen - hypothetical protein CHU_3447 1 None None None 110636958 Common acrB AcrB/AcrD family multidrug resistance protein CHU_0538 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 110638726 Common - hypothetical protein CHU_2335 15 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 110636513 Common cmk cytidylate kinase CHU_0086 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 110638550 Nonpathogen - hypothetical protein CHU_2154 2 None None None 110636845 Common - hypothetical protein CHU_0422 42 COG3391 COG3391, Uncharacterized conserved protein Function unknown 110638595 Common - hypothetical protein CHU_2199 19 COG2322 COG2322, Predicted membrane protein Function unknown 110636814 Common - hypothetical protein CHU_0391 7 None None None 110638857 Common - hypothetical protein CHU_2470 31 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 110637335 Common - hypothetical protein CHU_0923 47 COG2815 COG2815, Uncharacterized protein conserved in bacteria Function unknown 110637466 Common - conserved hypothetical protein (possible flavoredoxin) CHU_1056 73 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 110638889 Common glnA glutamate--ammonia ligase (glutamine synthetase) CHU_2502 224 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 110638684 Common malQ 4-a-glucanotransferase, glycoside hydrolase family 77 protein CHU_2290 119 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 110638907 Nonpathogen - hypothetical protein CHU_2520 1 None None None 110640203 Common glmS glutamine--fructose-6-phosphate transaminase, isomerizing CHU_3838 239 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 110637225 Nonpathogen - hypothetical protein CHU_0805 1 None None None 110638378 Common chaA calcium/proton antiporter CHU_1979 44 COG0387 ChaA, Ca2+/H+ antiporter Inorganic ion transport and metabolism 110636904 Common ompA outer membrane protein, OmpA family CHU_0482 167 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110638817 Nonpathogen - hypothetical protein CHU_2428 1 None None None 110637033 Common ftsH cell division protein, ATP-dependent metalloprotease CHU_0613 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 110639223 Common - conserved hypothetical protein, with LysM-repeats CHU_2842 35 COG1388 LytE, FOG: LysM repeat Cell envelope biogenesis, outer membrane 110639019 Common naoX NADH oxidase/rhodanese-related sulfurtransferase CHU_2634 140 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 110637928 Nonpathogen - hypothetical protein CHU_1524 2 None None None 110637840 Common leuA hydroxymethylglutaryl-CoA lyase like protein CHU_1436 91 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 110638213 Common - hypothetical protein CHU_1813 44 COG2996 COG2996, Uncharacterized protein conserved in bacteria Function unknown 110637431 Common gcvP glycine dehydrogenase CHU_1021 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 110638138 Nonpathogen - hypothetical protein CHU_1738 3 None None None 110638640 Common yicL permease, DMT family CHU_2244 81 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 110637499 Nonpathogen - hypothetical protein CHU_1089 1 None None None 110638748 Nonpathogen - hypothetical protein CHU_2357 1 None None None 110636567 Common - possible DNAK suppressor protein CHU_0141 25 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 110638244 Common - hypothetical protein CHU_1844 9 None None None 110637055 Common cysN sulfate adenylyltransferase, subunit 1 CHU_0635 249 COG2895 CysN, GTPases - Sulfate adenylate transferase subunit 1 Inorganic ion transport and metabolism 110637174 Common msrB methionine sulfoxide reductase B CHU_0754 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 110638872 Common - cyclic nucleotide binding regulatory protein CHU_2485 30 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110637446 Common lpxA UDP-N-acetylglucosamine acyltransferase CHU_1036 165 COG1043 LpxA, Acyl- acyl carrier protein 110637897 Common - hypothetical protein CHU_1493 16 None None None 110636995 Nonpathogen - hypothetical protein CHU_0575 1 None None None 110639031 Common - ABC transporter, permease component CHU_2646 41 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 110640041 Common - membrane protein CHU_3675 66 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 110636886 Common - hypothetical protein CHU_0464 3 None None None 110639081 Common ydgG transport protein CHU_2697 193 COG0628 PerM, Predicted permease General function prediction only 110637523 Nonpathogen - hypothetical protein CHU_1115 4 None None None 110637267 Common - a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0851 57 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110636477 Common pinQ possible DNA-invertase from lambdoid prophage Qin CHU_0050 67 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 110637795 Common lpxB lipid A disaccharide synthase, glycosyltransferase family 19 protein CHU_1391 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 110639273 Nonpathogen - conserved hypothetical protein; possible thymidylate kinase CHU_2894 2 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 110639673 Common recO possible DNA repair protein CHU_3301 12 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 110637255 Common - CHU large protein; uncharacterized CHU_0837 35 None None None 110637117 Common pgdA polysaccharide deacetylase-related protein CHU_0697 9 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 110639229 Nonpathogen - hypothetical protein CHU_2848 1 None None None 110639315 Common - hypothetical protein CHU_2940 50 COG4804 COG4804, Uncharacterized conserved protein Function unknown 110637613 Nonpathogen - hypothetical protein CHU_1206 1 None None None 110638870 Nonpathogen - hypothetical protein CHU_2483 1 None None None 110637130 Common - hypothetical protein CHU_0710 3 None None None 110637156 Nonpathogen - hypothetical protein CHU_0736 1 None None None 110636625 Common - ABC transporter, permease component CHU_0200 30 COG0730 COG0730, Predicted permeases General function prediction only 110638822 Common - hypothetical protein CHU_2433 3 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 110638428 Common - hypothetical protein CHU_2029 53 COG1331 COG1331, Highly conserved protein containing a thioredoxin domain Posttranslational modification, protein turnover, chaperones 110638961 Common - two-component response regulator CHU_2575 192 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 110637337 Common - hypothetical protein CHU_0925 119 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 110638005 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase CHU_1602 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 110638367 Common nrtB nitrate ABC transporter, permease component CHU_1968 134 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 110638188 Common - conserved hypothetical protein; possible permease CHU_1788 18 COG0795 COG0795, Predicted permeases General function prediction only 110637232 Nonpathogen - hypothetical protein CHU_0812 1 None None None 110637804 Common pykF pyruvate kinase I CHU_1400 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 110638423 Common - Mn-dependent transcriptional regulator CHU_2024 91 COG1321 TroR, Mn-dependent transcriptional regulator Transcription 110637204 Common aspB aspartate transaminase CHU_0784 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 110639643 Common - hypothetical protein CHU_3271 6 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 110637974 Common fmt methionyl-tRNA formyltransferase CHU_1570 222 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 110637966 Common - SAM-dependent methyltransferase CHU_1562 22 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110638338 Common - deoxyhypusine synthase CHU_1939 42 COG1899 DYS1, Deoxyhypusine synthase Posttranslational modification, protein turnover, chaperones 110639942 Common ydjG oxidoreductase CHU_3576 181 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 110639417 Common - thioredoxin family protein CHU_3043 138 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 110637891 Nonpathogen - hypothetical protein CHU_1487 1 None None None 110639705 Common - possible transcriptional regulator, AraC family CHU_3336 83 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110638222 Common - transcriptional regulator, sigma-54-related CHU_1822 167 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110636765 Nonpathogen - hypothetical protein CHU_0342 1 None None None 110639645 Common anmK anhydro-N-acetylmuramic acid kinase CHU_3273 120 COG2377 COG2377, Predicted molecular chaperone distantly related to HSP70-fold metalloproteases Posttranslational modification, protein turnover, chaperones 110637043 Nonpathogen - hypothetical protein CHU_0623 1 None None None 110639872 Nonpathogen - hypothetical protein CHU_3506 2 None None None 110637401 Common - aminotransferase CHU_0991 144 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 110638279 Nonpathogen - hypothetical protein CHU_1880 1 None None None 110640091 Common feoA ferrous iron transport protein A CHU_3725 30 COG1918 FeoA, Fe2+ transport system protein A Inorganic ion transport and metabolism 110638519 Common - dehydrogenase, possible 3-oxoacyl-[acyl-carrier-protein] reductase CHU_2123 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110638965 Common - conserved hypothetical protein; possible transcriptional regulators, MarR/EmrR family CHU_2579 31 None None None 110639995 Common rbfA ribosome-binding factor A CHU_3629 69 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 110637485 Common - CHU large protein; candidate b-glycosidase, glycoside hydrolase family 8 protein CHU_1075 161 COG3405 CelA, Endoglucanase Y Carbohydrate transport and metabolism 110636558 Common - hypothetical protein CHU_0132 36 COG4628 COG4628, Uncharacterized conserved protein Function unknown 110639219 Common - hypothetical protein CHU_2838 63 COG1273 COG1273, Uncharacterized conserved protein Function unknown 110637865 Common - CHU large protein; uncharacterized CHU_1461 25 None None None 110637213 Nonpathogen - conserved hypothetical protein; possible sensor histidine kinase CHU_0793 5 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110636699 Common - hypothetical protein CHU_0275 6 None None None 110636914 Common hemC hydroxymethylbilane synthase (porphobilinogen deaminase) CHU_0492 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 110637239 Nonpathogen - hypothetical protein CHU_0819 1 None None None 110636684 Common - TonB-linked outer membrane receptor CHU_0259 99 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110636718 Nonpathogen - hypothetical protein CHU_0294 1 None None None 110637722 Common uhpA response regulator CHU_1317 223 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 110636916 Common rfbD dTDP-4-dehydrorhamnose reductase CHU_0494 209 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 110639025 Common kch potassium channel protein CHU_2640 107 None None None 110637690 Nonpathogen - hypothetical protein CHU_1285 1 None None None 110638721 Common - hypothetical protein CHU_2330 63 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 110639035 Common - tonB-related protein CHU_2650 5 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 110639056 Nonpathogen - hypothetical protein CHU_2671 1 None None None 110638091 Common - hypothetical protein CHU_1690 4 None None None 110636937 Common - hypothetical protein CHU_0516 2 None None None 110639843 Common dapE peptidase, family M20/M25/M40 and dimerization domain CHU_3476 186 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 110639356 Common acs acetyl-CoA synthetase CHU_2982 201 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 110638715 Common tpn transposase, IS3 family CHU_2322 144 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 110639492 Common - CHU large protein; possible phytase CHU_3119 24 COG4222 COG4222, Uncharacterized protein conserved in bacteria Function unknown 110639449 Common umuD SOS-response transcriptional repressor CHU_3076 149 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 110637160 Common - hypothetical protein CHU_0740 2 None None None 110639415 Common phoR two-component sensor histidine kinase, phosphate regulation CHU_3041 220 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 110637036 Nonpathogen - hypothetical protein CHU_0616 1 None None None 110639715 Nonpathogen - hypothetical protein CHU_3346 1 None None None 110637697 Common - hypothetical protein CHU_1292 18 COG4335 COG4335, DNA alkylation repair enzyme DNA replication, recombination, and repair 110638663 Common - hypothetical protein CHU_2267 31 COG2433 COG2433, Uncharacterized conserved protein Function unknown 110640126 Common ahpC peroxiredoxin CHU_3760 211 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110638695 Common - transcriptional regulator, AraC family CHU_2301 146 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 110638894 Common wzxE membrane protein CHU_2507 35 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 110637198 Common - glycosylhydrolase family 9 protein CHU_0778 17 None None None 110638115 Common - conserved hypothetical protein; possible organic radical activating enzyme CHU_1715 161 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 110640179 Nonpathogen - hypothetical protein CHU_3814 1 None None None 110636616 Common surA peptidyl-prolyl cis-trans isomerase (survival protein) CHU_0191 157 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 110636643 Common ybiT ABC transporter, ATP-binding protein CHU_0218 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 110639751 Common nbaC 3-hydroxyanthranilate 3,4-dioxygenase CHU_3382 16 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 110638612 Common yheS ABC transporter, ATP-binding protein CHU_2216 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 110639222 Common - hypothetical protein CHU_2841 22 None None None 110639596 Common folP dihydropteroate synthase CHU_3223 218 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 110638196 Common ompA outer membrane protein 3a CHU_1796 160 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110640144 Nonpathogen - hypothetical protein CHU_3779 1 None None None 110638447 Common - hypothetical protein CHU_2051 17 None None None 110637979 Common hisB possible histidinol phosphatase CHU_1575 123 COG0241 HisB, Histidinol phosphatase and related phosphatases Amino acid transport and metabolism 110638296 Common menB naphthoate synthase (dihydroxynaphtoic acid synthetase) CHU_1897 176 COG0447 MenB, Dihydroxynaphthoic acid synthase Coenzyme metabolism 110637729 Common moaE molybdopterin converting factor, subunit 2 CHU_1324 146 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 110638601 Common - cytochrome oxidase assembly protein CHU_2205 102 COG1612 CtaA, Uncharacterized protein required for cytochrome oxidase assembly Posttranslational modification, protein turnover, chaperones 110638259 Common - conserved hypothetical protein; possible cell wall protein CHU_1860 19 None None None 110637502 Common arcB aerobic respiration sensor-response protein; histidine protein kinase CHU_1092 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110640180 Nonpathogen - hypothetical protein CHU_3815 1 None None None 110638781 Common - conserved hypothetical protein; possible dithiol-disulfide isomerase CHU_2391 32 COG2761 FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 110638467 Common - hypothetical protein CHU_2071 2 None None None 110636953 Nonpathogen - hypothetical protein CHU_0533 2 None None None 110636534 Common sodA superoxide dismutase, manganese CHU_0108 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 110639499 Nonpathogen - hypothetical protein CHU_3126 1 None None None 110638951 Common lepB signal peptidase I CHU_2565 93 COG4959 TraF, Type IV secretory pathway, protease TraF Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 110637563 Common - CHU large protein; candidate xyloglucanase, glycoside hydrolase family 74 protein CHU_1155 19 None None None 110636746 Common - deacetylase CHU_0323 160 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 110637912 Common - hypothetical protein CHU_1508 46 COG3544 COG3544, Uncharacterized protein conserved in bacteria Function unknown 110639343 Nonpathogen - hypothetical protein CHU_2968 1 None None None 110639614 Nonpathogen - hypothetical protein CHU_3241 1 None None None 110639580 Common rhsD conserved hypothetical protein with multiple RHS repeat domains CHU_3207 26 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 110638173 Common - conserved hypothetical protein; possible transcriptional regulator CHU_1773 130 COG1678 COG1678, Putative transcriptional regulator Transcription 110640133 Nonpathogen - hypothetical protein CHU_3767 1 None None None 110638176 Common - hypothetical protein CHU_1776 62 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 110640037 Common - hypothetical protein CHU_3671 37 COG4823 AbiF, Abortive infection bacteriophage resistance protein Defense mechanisms 110639895 Common htpX Zn-dependent protease with chaperone function CHU_3529 182 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 110638808 Common lgt prolipoprotein diacylglyceryl transferase CHU_2419 163 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 110637177 Common - thiol-disulfide isomerase/thioredoxin CHU_0757 51 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110639210 Common gatC glutamyl-tRNA(Gln) amidotransferase subunit C CHU_2829 157 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 110638474 Common cheB protein-glutamate methylesterase (chemotaxis-specific methylesterase) CHU_2078 151 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 110637825 Nonpathogen - hypothetical protein CHU_1421 1 None None None 110639092 Nonpathogen - hypothetical protein CHU_2708 1 None None None 110639436 Common hutG formiminoglutamase-related protein CHU_3062 34 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 110636891 Common - sterol desaturase-related protein CHU_0469 70 COG3000 ERG3, Sterol desaturase Lipid metabolism 110639322 Common - hypothetical protein CHU_2947 11 COG2865 COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen Transcription 110637871 Nonpathogen - hypothetical protein CHU_1467 1 None None None 110639483 Common hrpB ATP-dependent helicase CHU_3110 135 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 110638073 Common - hypothetical protein CHU_1672 3 None None None 110637557 Common ilvC ketol-acid reductoisomerase CHU_1149 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 110636609 Common atpG ATP synthase, subunit gamma (H(+)-transporting two-sector ATPase) CHU_0184 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 110639078 Nonpathogen - hypothetical protein CHU_2693 1 None None None 110636445 Common cap polysaccharide biosynthesis protein; permease component CHU_0018 52 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 110637541 Common copA Cu(I)-translocating P-type ATPase CHU_1133 230 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 110637950 Common gldF ABC transporter permease; gliding motility-associated protein CHU_1546 51 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 110637382 Common - hypothetical protein CHU_0972 11 None None None 110639400 Common - hypothetical protein CHU_3026 7 COG4252 COG4252, Predicted transmembrane sensor domain Signal transduction mechanisms 110637778 Common nuoJ NADH dehydrogenase I chain J CHU_1373 158 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 110639388 Common - hypothetical protein CHU_3014 6 None None None 110637277 Nonpathogen - conserved hypothetical protein; possible xylosyltransferase CHU_0861 1 None None None 110636871 Nonpathogen - hypothetical protein CHU_0449 1 None None None 110636538 Common - Fe-S oxidoreductase CHU_0112 41 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 110639381 Nonpathogen - hypothetical protein CHU_3007 1 None None None 110639928 Common rpoE RNA polymerase sigma-70 factor, ECF subfamily CHU_3562 37 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110636577 Common - hypothetical protein CHU_0152 53 COG3169 COG3169, Uncharacterized protein conserved in bacteria Function unknown 110637539 Common barA sensor histidine kinase CHU_1131 220 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 110638053 Nonpathogen - hypothetical protein CHU_1651 1 None None None 110636633 Common - hypothetical protein CHU_0208 4 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 110636730 Common trmH tRNA/rRNA methyltransferase, TrmH family CHU_0306 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 110639134 Nonpathogen - hypothetical protein CHU_2751 1 None None None 110638317 Common hemF coproporphyrinogen III oxidase CHU_1918 113 COG0408 HemF, Coproporphyrinogen III oxidase Coenzyme metabolism 110639124 Common murD UDP-N-acetylmuramoylalanine-D-glutamate ligase CHU_2741 211 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 110638794 Common ycaJ recombination factor protein RarA CHU_2405 248 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 110637879 Nonpathogen - hypothetical protein CHU_1475 1 None None None 110639375 Nonpathogen - hypothetical protein CHU_3001 5 None None None 110636541 Common udk uridine kinase CHU_0115 81 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 110639758 Common - hypothetical protein CHU_3389 14 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 110639839 Common - transcriptional regulator CHU_3472 135 COG1733 COG1733, Predicted transcriptional regulators Transcription 110637704 Common - hypothetical protein CHU_1299 116 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110637415 Common ugpQ glycerophosphodiester phosphodiesterase CHU_1005 142 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 110637289 Common - CHU large protein CHU_0873 15 None None None 110639859 Nonpathogen - hypothetical protein CHU_3493 1 None None None 110639130 Nonpathogen - hypothetical protein CHU_2747 1 None None None 110636783 Common yhdG probable TIM-barrel protein, NifR3 family CHU_0360 207 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 110637280 Common - conserved hypothetical protein; glycosyltransferase related CHU_0864 6 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110639046 Common - hypothetical protein CHU_2661 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 110636498 Common dnaJ molecular chaperone, heat shock protein CHU_0071 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 110637736 Common nirD probable nitrite reductase (NAD(P)H), small subunit CHU_1331 87 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 110640017 Common - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) CHU_3651 121 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 110637027 Nonpathogen - hypothetical protein; possible glycosyltransferase CHU_0607 4 None None None 110639115 Common - two-component response regulator CHU_2732 212 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110639366 Common lon ATP-dependent protease La CHU_2992 220 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 110638858 Nonpathogen - hypothetical protein CHU_2471 3 None None None 110639307 Common - hypothetical protein CHU_2932 31 None None None 110638312 Common spoIIA anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) CHU_1913 34 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 110637169 Common - hypothetical protein CHU_0749 14 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 110638563 Nonpathogen - hypothetical protein CHU_2167 1 None None None 110637189 Common pldA outer membrane phospholipase A CHU_0769 51 COG2829 PldA, Outer membrane phospholipase A Cell envelope biogenesis, outer membrane 110638037 Common - hypothetical protein CHU_1635 4 None None None 110639914 Common rbn probable ribonuclease CHU_3548 44 COG1295 Rbn, Predicted membrane protein Function unknown 110638355 Common - hypothetical protein CHU_1956 11 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 110638736 Common npdA NAD-dependent deacetylase CHU_2345 151 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 110636856 Common - hypothetical protein CHU_0434 13 COG4270 COG4270, Predicted membrane protein Function unknown 110639474 Common dnaK chaperone protein (heat shock protein 70) CHU_3101 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 110638939 Nonpathogen - hypothetical protein CHU_2553 1 None None None 110637819 Common pacL cation-transporting ATPase, calcium-transporting ATPase CHU_1415 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 110638107 Common clpX ATP-dependent protease ATP-binding subunit CHU_1707 216 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 161712042 Common gltD glutamate synthase subunit beta CHU_3777 184 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 110639962 Common - hypothetical protein CHU_3596 10 COG5285 COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin Secondary metabolites biosynthesis, transport, and catabolism 110637657 Common mrcA candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase, candidate murein polymerase, Glycosyltransferase Family 51 protein CHU_1252 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 110636607 Common atpH ATPase, delta subunit (H(+)-transporting two-sector ATPase) CHU_0182 129 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 110637666 Common ureC urease subunit alpha CHU_1261 96 COG0804 UreC, Urea amidohydrolase (urease) alpha subunit Amino acid transport and metabolism 110637954 Nonpathogen - hypothetical protein CHU_1550 1 None None None 110638960 Common rpoE RNA polymerase, sigma-E factor; heat shock and oxidative stress CHU_2574 109 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110636793 Nonpathogen - hypothetical protein CHU_0370 1 None None None 110636836 Common - hypothetical protein CHU_0413 35 COG5637 COG5637, Predicted integral membrane protein Function unknown 110639475 Nonpathogen - hypothetical protein CHU_3102 1 None None None 110638075 Nonpathogen - hypothetical protein CHU_1674 1 None None None 110639466 Common - hypothetical protein CHU_3093 12 COG3219 COG3219, Uncharacterized protein conserved in bacteria Function unknown 110639689 Common xseA exodeoxyribonuclease VII, large subunit CHU_3317 197 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 110638166 Common - conserved hypothetical protein; possible DNA alkylation repair enzyme CHU_1766 37 COG4335 COG4335, DNA alkylation repair enzyme DNA replication, recombination, and repair 110639453 Common argG argininosuccinate synthetase CHU_3080 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 110636776 Common - CHU large protein; candidate b-mannanase, glycoside hydrolase family 26 protein CHU_0353 10 COG4124 ManB, Beta-mannanase Carbohydrate transport and metabolism 110637650 Common - ion channel protein CHU_1245 220 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 110639088 Common aspB aspartate aminotransferase CHU_2704 42 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 110639460 Common argE acetylornithine deacetylase CHU_3087 195 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 110638700 Common tpn transposase CHU_2306 9 None None None 110636715 Common gldH conserved hypothetical protein; possible motility protein CHU_0291 5 None None None 110637638 Nonpathogen - hypothetical protein CHU_1232 1 None None None 110637628 Common cpxA signal transduction histidine kinase CHU_1222 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110637180 Common divIVA cell division initiation protein CHU_0760 53 COG3599 DivIVA, Cell division initiation protein Cell division and chromosome partitioning 110639238 Nonpathogen - hypothetical protein CHU_2857 1 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 110639244 Common fabF 3-oxoacyl-[acyl-carrier-protein] synthase CHU_2863 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110639434 Common fbaA fructose-bisphosphate aldolase CHU_3060 169 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 110639952 Nonpathogen - hypothetical protein CHU_3586 1 None None None 110637548 Common cytC cytochrome c, mono- and diheme variant CHU_1140 75 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 110637367 Common cysH phosphoadenosine-phosphosulfate reductase CHU_0957 158 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 110640000 Common - hypothetical protein CHU_3634 2 None None None 110638043 Common - hypothetical protein CHU_1641 7 None None None 110638996 Nonpathogen - gliding motility-related protein; possible gldN and/or gldO CHU_2610 1 None None None 110637083 Common - hypothetical protein CHU_0663 8 None None None 110640163 Common - hypothetical protein CHU_3798 6 COG5562 COG5562, Phage envelope protein General function prediction only 110636591 Common - outer membrane protein CHU_0166 14 COG0729 COG0729, Outer membrane protein Cell envelope biogenesis, outer membrane 110639299 Common - CHU large protein; uncharacterized CHU_2924 20 None None None 110639482 Nonpathogen - hypothetical protein CHU_3109 1 None None None 110636454 Common maeB malic enzyme CHU_0027 210 COG0281 SfcA, Malic enzyme Energy production and conversion 110636461 Common - zinc-related peptidase CHU_0034 15 COG2856 COG2856, Predicted Zn peptidase Amino acid transport and metabolism 110637944 Common - hypothetical protein CHU_1540 6 COG3147 DedD, Uncharacterized protein conserved in bacteria Function unknown 110638788 Common - hypothetical protein CHU_2399 91 None None None 110640055 Common cafA ribonuclease G CHU_3689 186 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 110639696 Common - hypothetical protein CHU_3324 7 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 110640082 Common - hypothetical protein CHU_3716 7 None None None 110638732 Common - hypothetical protein CHU_2341 70 COG1259 COG1259, Uncharacterized conserved protein Function unknown 110640076 Nonpathogen - hypothetical protein CHU_3710 1 None None None 110638911 Common - subtilisin-like serine protease CHU_2524 79 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 110636899 Common htpG heat shock protein 90 CHU_0477 149 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 110639099 Common yihA GTPase EngB CHU_2716 184 COG0218 COG0218, Predicted GTPase General function prediction only 110639472 Common mutT mutator protein; oxidative damage repair protein CHU_3099 149 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 110639771 Common ybfF probable esterase/lipase CHU_3402 111 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110636576 Common barA two-component sensor histidine kinase CHU_0150 221 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110638049 Nonpathogen - hypothetical protein CHU_1647 1 None None None 110639451 Common purU formyltetrahydrofolate deformylase CHU_3078 220 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 110637634 Common icd isocitrate dehydrogenase CHU_1228 68 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 110639117 Nonpathogen - hypothetical protein CHU_2734 1 None None None 110639753 Nonpathogen - hypothetical protein CHU_3384 1 None None None 110637639 Common dnaX DNA polymerase III, tau and gamma subunits CHU_1233 249 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 110636855 Common - hypothetical protein CHU_0433 12 None None None 110638309 Common atoB acetyl-CoA acetyltransferase CHU_1910 184 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 110637760 Common arcB two component sensor histidine kinase CHU_1355 221 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110640015 Common - hypothetical protein CHU_3649 74 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 110638172 Common - hypothetical protein CHU_1772 45 None None None 110638275 Common nhaA Na+/H+ antiporter CHU_1876 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 110639579 Nonpathogen - hypothetical protein CHU_3206 1 None None None 110638525 Common - hypothetical protein CHU_2129 11 None None None 110637747 Nonpathogen - hypothetical protein CHU_1342 1 None None None 110639729 Common lpdA dihydrolipoyl dehydrogenanse CHU_3360 245 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 110638033 Common greA transcription elongation factor CHU_1631 204 COG0782 GreA, Transcription elongation factor Transcription 110636755 Common - hypothetical protein CHU_0332 14 None None None 110637172 Common pccB propionyl-CoA carboxylase beta subunit CHU_0752 143 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 110637551 Common - hypothetical protein CHU_1143 65 COG2836 COG2836, Uncharacterized conserved protein Function unknown 110638571 Common - GlcNAc deacetylase-related protein, carbohydrate esterase family 4 protein CHU_2175 101 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 110637644 Common - CHU large protein; candidate bifunctional acetylxylan esterase/xylanase, CBM4 module, Glycoside Hydrolase Family 10 protein and Carbohydrate Esterase Family 6 protein CHU_1239 45 COG3693 XynA, Beta-1,4-xylanase Carbohydrate transport and metabolism 110637949 Common gldA ABC-type multidrug transporter, ATP-binding protein; gliding motility-associated protein CHU_1545 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 110638078 Common - cyclic nucleotide binding regulatory protein CHU_1677 26 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110640209 Common - periplasmic protein involved in polysaccharide export CHU_3844 7 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 110639697 Common - transcriptional regulator, AraC family CHU_3326 32 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110638253 Common - CHU large protein; uncharacterized CHU_1854 20 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 110640042 Common ileS isoleucyl-tRNA synthetase CHU_3676 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110639924 Nonpathogen - hypothetical protein CHU_3558 1 None None None 110638739 Nonpathogen - hypothetical protein CHU_2348 2 None None None 110637842 Common - hypothetical protein CHU_1438 3 None None None 110638475 Common cheR protein-glutamate O-methyltransferase; response regulator for chemotaxis CHU_2079 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 110639294 Nonpathogen - hypothetical protein CHU_2919 1 None None None 110638888 Nonpathogen - hypothetical protein CHU_2501 4 None None None 110639463 Common - hypothetical protein CHU_3090 34 COG4728 COG4728, Uncharacterized protein conserved in bacteria Function unknown 110636786 Common barA sensor histidine kinase/response regulator fusion protein CHU_0363 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110638968 Common creD hypothetical protein CHU_2582 29 COG4452 CreD, Inner membrane protein involved in colicin E2 resistance Defense mechanisms 110637662 Common livM branched-chain amino acid ABC transporter, permease component CHU_1257 153 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 110636714 Common - hypothetical protein CHU_0290 2 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 110637361 Common ftsX cell division protein CHU_0951 88 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 110638791 Common sucD succinate--CoA ligase, ADP-forming (succinyl-CoA synthetase, alpha subunit) CHU_2402 211 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 110637710 Nonpathogen - hypothetical protein CHU_1305 1 None None None 110636805 Common - hypothetical protein CHU_0382 114 COG2353 COG2353, Uncharacterized conserved protein Function unknown 110639682 Common purN phosphoribosylglycinamide formyltransferase CHU_3310 219 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 110636896 Nonpathogen - hypothetical protein CHU_0474 1 None None None 110639369 Common yaeL membrane-associated zinc metalloprotease CHU_2995 214 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 110637961 Common - CHU large protein; uncharacterized CHU_1557 105 None None None 110638724 Common - hypothetical protein CHU_2333 20 COG3417 FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) General function prediction only 110639570 Nonpathogen - hypothetical protein CHU_3197 1 None None None 110637433 Nonpathogen - hypothetical protein CHU_1023 1 None None None 110637926 Nonpathogen - hypothetical protein CHU_1522 2 None None None 110638646 Common gpmA phosphoglycerate mutase (phosphoglyceromutase 1) CHU_2250 185 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 110637847 Common dnaJ DNAJ class chaperone; heat shock protein CHU_1443 234 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 110639782 Common ompH outer membrane protein, ompH family CHU_3413 20 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 110637569 Nonpathogen - hypothetical protein CHU_1161 1 None None None 110637185 Common - aspartate/tyrosine/aromatic aminotransferase CHU_0765 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 110636656 Common - hypothetical protein CHU_0231 10 None None None 110638709 Common bcd glucose/sorbosone dehydrogenase CHU_2315 124 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 110640202 Common - hypothetical protein CHU_3837 4 None None None 110637817 Common gyrB DNA topoisomerase (ATP-hydrolyzing), subunit B (DNA gyrase) CHU_1413 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 110637095 Common arcB aerobic respiration sensor-response protein; histidine protein kinase CHU_0675 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110636813 Common fabH 3-oxoacyl-(acyl carrier protein) synthase III CHU_0390 88 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 110638376 Nonpathogen - hypothetical protein CHU_1977 1 None None None 110636769 Common rpoE RNA polymerase, sigma-E factor; heat shock and oxidative stress CHU_0346 103 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110637702 Common dfr dihydrofolate reductase family protein CHU_1297 78 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 110638955 Common - hypothetical protein CHU_2569 17 COG3592 COG3592, Uncharacterized conserved protein Function unknown 110638002 Common ydgR oligopeptide transporter CHU_1599 79 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 110637810 Common - DnaJ domain protein CHU_1406 8 None None None 110638964 Common - hypothetical protein CHU_2578 4 None None None 110636472 Nonpathogen - hypothetical protein CHU_0045 1 None None None 110637006 Nonpathogen - membrane protein CHU_0586 2 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 110637731 Common mobA molybdopterin-guanine dinucleotide biosynthesis protein A CHU_1326 42 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 110638314 Common - hypothetical protein CHU_1915 92 COG1738 COG1738, Uncharacterized conserved protein Function unknown 110636542 Common yggV xanthosine triphosphate pyrophosphatase, Ham1-like protein CHU_0116 237 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 110638835 Common nusB antitermination factor CHU_2447 106 COG0781 NusB, Transcription termination factor Transcription 110639014 Common ompA outer membrane protein, OmpA family CHU_2629 149 COG1360 MotB, Flagellar motor protein Cell motility and secretion 110638483 Common ytfH probable transcriptional regulator CHU_2087 146 COG1733 COG1733, Predicted transcriptional regulators Transcription 110638983 Common priA primosomal protein N'(replication factor Y)(possible helicase) CHU_2597 211 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 110638935 Nonpathogen - hypothetical protein CHU_2549 1 None None None 110637297 Common - acetyltransferase with multiple hexapeptide repeat domains CHU_0883 199 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 110639892 Common - ICC-like phosphoesterase CHU_3526 57 COG1407 COG1407, Predicted ICC-like phosphoesterases General function prediction only 110639091 Common lys possible saccharopine dehydrogenase CHU_2707 14 COG1748 LYS9, Saccharopine dehydrogenase and related proteins Amino acid transport and metabolism 110637424 Common yhaH possible cytochrome CHU_1014 54 COG3152 COG3152, Predicted membrane protein Function unknown 110638022 Nonpathogen - hypothetical protein CHU_1620 1 None None None 110638950 Common lepB signal peptidase I CHU_2564 168 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 110639438 Common - hypothetical protein CHU_3064 7 COG2971 COG2971, Predicted N-acetylglucosamine kinase Carbohydrate transport and metabolism 110636559 Common - hypothetical protein CHU_0133 12 COG4293 COG4293, Uncharacterized protein conserved in bacteria Function unknown 110637162 Nonpathogen - hypothetical protein CHU_0742 1 None None None 110640005 Nonpathogen - hypothetical protein CHU_3639 1 None None None 110639260 Common atoC two-component response regulator CHU_2880 200 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110639328 Nonpathogen - hypothetical protein CHU_2953 1 None None None 110638319 Nonpathogen - hypothetical protein CHU_1920 1 None None None 110639999 Common glyA serine hydroxymethyltransferase CHU_3633 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 110638993 Nonpathogen - hypothetical protein CHU_2607 1 None None None 110638109 Nonpathogen - hypothetical protein CHU_1709 1 None None None 110640087 Common lysC aspartokinase CHU_3721 234 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 110636585 Common - hypothetical protein CHU_0160 2 None None None 110636771 Nonpathogen - hypothetical protein CHU_0348 1 None None None 110639976 Nonpathogen - hypothetical protein CHU_3610 1 None None None 110638969 Common - hypothetical protein CHU_2583 10 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 110639199 Common - hypothetical protein CHU_2818 47 COG3391 COG3391, Uncharacterized conserved protein Function unknown 110638784 Common - conserved hypothetical protein, DHH family CHU_2395 81 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 110637347 Common - hypothetical protein CHU_0935 5 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 110636429 Common - nucleoside-diphosphate-sugar epimerase CHU_0002 195 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110639063 Common - hypothetical protein CHU_2678 3 None None None 110637544 Common - fatty acid desaturase CHU_1136 63 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 110639990 Common - hypothetical protein CHU_3624 135 COG1733 COG1733, Predicted transcriptional regulators Transcription 110639127 Nonpathogen - hypothetical protein CHU_2744 1 None None None 110637532 Common - hydrolase/oxidase CHU_1124 86 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110639849 Common mazG nucleoside triphosphate pyrophosphohydrolase CHU_3483 154 COG3956 COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain General function prediction only 110637595 Common - hypothetical protein CHU_1187 2 None None None 110639110 Common yjeQ ribosome-associated GTPase CHU_2727 163 COG1162 COG1162, Predicted GTPases General function prediction only 110637874 Nonpathogen - hypothetical protein CHU_1470 1 None None None 110638149 Nonpathogen - hypothetical protein CHU_1749 1 None None None 110638035 Common argD acetylornithine aminotransferase CHU_1633 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 110638210 Common - sterol desaturase-related protein CHU_1810 78 COG3000 ERG3, Sterol desaturase Lipid metabolism 110638552 Nonpathogen - hypothetical protein CHU_2156 1 None None None 110638636 Common sucC succinate--CoA ligase, ADP-forming (succinyl-CoA synthetase, beta subunit) CHU_2240 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 110637940 Common tyrS tyrosine--tRNA ligase (tyrosine tRNA synthetase) CHU_1536 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110639488 Common deaD inducible ATP-independent RNA helicase CHU_3115 233 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110637558 Nonpathogen - hypothetical protein CHU_1150 1 None None None 110638408 Nonpathogen - hypothetical protein CHU_2009 1 None None None 110639916 Common - outer membrane protein CHU_3550 30 COG3652 COG3652, Predicted outer membrane protein Function unknown 110637081 Nonpathogen - hypothetical protein CHU_0661 1 None None None 110637828 Common - hypothetical protein CHU_1424 9 COG3832 COG3832, Uncharacterized conserved protein Function unknown 110638825 Common yiaD possible outer membrane protein CHU_2436 179 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110636614 Common - hypothetical protein CHU_0189 10 None None None 110636999 Nonpathogen - hypothetical protein CHU_0579 1 None None None 110639055 Common - conserved hypothetical protein; possible outer membrane related CHU_2670 4 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 110637798 Nonpathogen - hypothetical protein CHU_1394 1 None None None 110640123 Common - conserved hypothetical protein; possible iron uptake protein CHU_3757 55 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 110637509 Common - hypothetical protein CHU_1099 10 COG5500 COG5500, Predicted integral membrane protein Function unknown 110639214 Common - hypothetical protein CHU_2833 4 None None None 110640177 Common - glycosyltransferase-distantly-related protein CHU_3812 27 COG1819 COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase Carbohydrate transport and metabolism / Signal transduction mechanisms 110639842 Common - hypothetical protein CHU_3475 6 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 110637448 Common lpxD UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase CHU_1038 177 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 110639395 Nonpathogen - hypothetical protein CHU_3021 1 None None None 110638180 Common - hypothetical protein CHU_1780 4 None None None 110637481 Common - hypothetical protein CHU_1071 26 COG3007 COG3007, Uncharacterized paraquat-inducible protein B Function unknown 110640050 Common - hemolysin-related protein, with CBS domain; gliding motility protein CHU_3684 217 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 110637919 Common - protein-tyrosine-phosphatase CHU_1515 17 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 110636749 Common menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase CHU_0326 102 COG1575 MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase Coenzyme metabolism 110637408 Common pgm phosphomannomutase CHU_0998 241 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 110638058 Common nlpC cell wall-associated hydrolase CHU_1657 156 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 110639022 Common cysI sulfite reductase (NADPH) CHU_2637 173 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 110637218 Common - hypothetical protein CHU_0798 2 None None None 110637800 Common rnc ribonuclease III CHU_1396 216 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 110639497 Common - hypothetical protein CHU_3124 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 110639982 Common tpn transposase, IS3 family CHU_3616 144 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 110637604 Common - b-glycosyltransferase-related protein, glycosyltransferase family 2 protein CHU_1196 65 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110637333 Common - hypothetical protein CHU_0919 3 None None None 110637727 Common moaA molybdenum cofactor biosynthesis protein A CHU_1322 203 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 110637692 Common leuS leucyl-tRNA synthetase CHU_1287 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110638113 Common yiaD possible outer membrane protein CHU_1713 163 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110638881 Common - hypothetical protein CHU_2494 35 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 110639768 Common - conserved hypothetical protein; possible ribosomal subunit interface protein CHU_3399 7 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 110639939 Nonpathogen - hypothetical protein CHU_3573 1 None None None 110637953 Common dnaN DNA polymerase III, beta-subunit CHU_1549 214 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 110638096 Common - possible ATPase CHU_1695 152 COG0714 COG0714, MoxR-like ATPases General function prediction only 110639791 Common infB translation initiation factor IF-2 CHU_3422 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 110639963 Common - hypothetical protein CHU_3597 13 None None None 110639281 Nonpathogen - hypothetical protein CHU_2903 2 None None None 110637062 Common - hypothetical protein CHU_0642 82 COG3093 VapI, Plasmid maintenance system antidote protein General function prediction only 110639631 Common - CHU large protein; uncharacterized CHU_3259 59 None None None 110638623 Common - hypothetical protein CHU_2227 3 None None None 110636439 Common - a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0012 226 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110638449 Nonpathogen - RNA polymerase ECF-type sigma factor CHU_2053 3 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110637779 Common nuoI NADH dehydrogenase I chain I CHU_1374 186 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 110639334 Nonpathogen - hypothetical protein CHU_2959 2 None None None 110639183 Common bglC b-glycosidase, glycoside hydrolase family 16 protein CHU_2802 16 COG2273 SKN1, Beta-glucanase/Beta-glucan synthetase Carbohydrate transport and metabolism 110639663 Common trpG anthranilate synthase, component II CHU_3291 235 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 110639913 Common - outer membrane protein CHU_3547 14 COG3652 COG3652, Predicted outer membrane protein Function unknown 110638294 Common tktC transketolase, C-terminal subunit CHU_1895 231 COG3958 COG3958, Transketolase, C-terminal subunit Carbohydrate transport and metabolism 110639968 Common topB DNA topoisomerase III CHU_3602 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 110639390 Common - hypothetical protein CHU_3016 7 None None None 110637699 Common - hypothetical protein CHU_1294 21 COG3059 COG3059, Predicted membrane protein Function unknown 110640094 Nonpathogen - hypothetical protein CHU_3728 1 None None None 110637863 Common tatA sec-independent protein translocase CHU_1459 59 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 110638767 Nonpathogen - hypothetical protein CHU_2376 1 None None None 110637720 Common - hypothetical protein CHU_1315 27 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 110639750 Common iscS kynureninase CHU_3381 76 COG3844 COG3844, Kynureninase Amino acid transport and metabolism 110638666 Nonpathogen - hypothetical protein CHU_2271 2 None None None 110639079 Nonpathogen - hypothetical protein CHU_2695 1 None None None 110637895 Common umuD peptidase, S24 family, UV repair protein CHU_1491 128 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 110639039 Nonpathogen - hypothetical protein CHU_2654 1 None None None 110638246 Nonpathogen - hypothetical protein CHU_1846 2 None None None 110636919 Nonpathogen - hypothetical protein CHU_0497 1 COG2732 COG2732, Barstar, RNAse (barnase) inhibitor Transcription 110636430 Common - TPR repeat containing protein CHU_0003 137 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 110639225 Common - serine protease, ClpP class CHU_2844 51 COG1030 NfeD, Membrane-bound serine protease (ClpP class) Posttranslational modification, protein turnover, chaperones 110637858 Common - outer membrane protein CHU_1454 11 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110639288 Common - hypothetical protein CHU_2913 21 COG3832 COG3832, Uncharacterized conserved protein Function unknown 110639412 Common rpsI 30S ribosomal protein S9 CHU_3038 218 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 110638009 Common - hypothetical protein CHU_1606 11 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110639700 Common - hypothetical protein CHU_3331 78 COG1742 COG1742, Uncharacterized conserved protein Function unknown 110638236 Common - hypothetical protein CHU_1836 12 COG5395 COG5395, Predicted membrane protein Function unknown 110639874 Nonpathogen - hypothetical protein CHU_3508 1 None None None 110638088 Common fklB peptidyl-prolyl cis-trans isomerase (rotamase) CHU_1687 133 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 110637265 Common lacA thiogalactoside acetyltransferase CHU_0849 173 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 110639678 Common - hypothetical protein CHU_3306 6 None None None 110639529 Common rpsC 30S ribosomal protein S3 CHU_3156 248 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 110639883 Common - hypothetical protein CHU_3517 3 None None None 110638201 Nonpathogen - hypothetical protein CHU_1801 1 None None None 110637681 Nonpathogen - hypothetical protein CHU_1276 1 None None None 110637196 Common ybiF integral membrane protein CHU_0776 85 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 110636935 Nonpathogen - hypothetical protein CHU_0514 1 None None None 110638401 Common dcd deoxycytidine triphosphate deaminase CHU_2002 67 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 110639138 Common - hypothetical protein CHU_2755 26 None None None 110640075 Common - conserved hypothetical protein; possible outer membrane receptor protein CHU_3709 95 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110637101 Nonpathogen - hypothetical protein CHU_0681 5 COG2318 DinB, Uncharacterized protein conserved in bacteria Function unknown 110639508 Common rplQ 50S ribosomal protein L17 CHU_3135 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 110640145 Common - conserved hypothetical protein; possible transcriptional regulator CHU_3780 7 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 110639209 Common plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase CHU_2828 112 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 110636788 Common - thioredoxin-related protein CHU_0365 104 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 110639945 Common exbB biopolymer transport protein CHU_3579 82 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 110640182 Common - hypothetical protein CHU_3817 10 COG3746 OprP, Phosphate-selective porin Inorganic ion transport and metabolism 110639778 Common - hypothetical protein CHU_3409 3 None None None 110639996 Common - hypothetical protein CHU_3630 4 None None None 110638424 Common mtsA Mn/Zn ABC transporter, substrate-binding protein CHU_2025 166 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 110637262 Common wzc tyrosine-protein kinase CHU_0846 133 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 110638144 Nonpathogen - hypothetical protein CHU_1744 1 None None None 110639276 Common - hypothetical protein CHU_2897 30 None None None 110636762 Common - hypothetical protein CHU_0339 6 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 110639863 Common - exodeoxyribonuclease III CHU_3497 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 110638018 Common ybgR cation transporter, permease component CHU_1615 65 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 110638331 Common yiaD possible outer membrane protein CHU_1932 168 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110639676 Common mrdB rod shape-determining protein CHU_3304 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 110639599 Common aroK shikimate kinase CHU_3226 199 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 110638584 Common - hypothetical protein CHU_2188 25 None None None 110637930 Nonpathogen - hypothetical protein CHU_1526 1 None None None 110639318 Nonpathogen - hypothetical protein CHU_2943 2 None None None 110639857 Common wcgH aminotransferase, DegT/DnrJ/EryC1/StrS faily CHU_3491 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 110639592 Common - pseudouridine synthase, 23S RNA-specific CHU_3219 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 110637793 Common fecD iron (III) ABC transporter, permease CHU_1389 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 110638758 Common - Appr-1-p processing enzyme family protein CHU_2367 116 COG2110 COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 General function prediction only 110637290 Nonpathogen - hypothetical protein CHU_0874 1 None None None 110637770 Common mntR transcriptional regulator CHU_1365 93 COG1321 TroR, Mn-dependent transcriptional regulator Transcription 110638508 Common - hypothetical protein CHU_2112 8 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 110639798 Common ydiJ probable oxidoreductase CHU_3429 199 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 110637251 Nonpathogen - hypothetical protein CHU_0832 1 None None None 110639626 Common - acyl-CoA-binding protein CHU_3254 21 COG4281 ACB, Acyl-CoA-binding protein Lipid metabolism 110639930 Common - hypothetical protein CHU_3564 8 None None None 110640029 Common fklB FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) CHU_3663 40 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 110636837 Common blc outer membrane lipoprotein (lipocalin) CHU_0414 66 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 110638469 Common - hypothetical protein CHU_2073 10 None None None 110636685 Common - hypothetical protein CHU_0260 3 None None None 110636666 Common thiD phosphomethylpyrimidine kinase CHU_0241 221 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 110637108 Common yiaD possible outer membrane protein CHU_0688 78 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110638069 Nonpathogen - hypothetical protein CHU_1668 1 None None None 110638163 Common - ABC transporter, ATP-binding protein CHU_1763 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 110638181 Common - FAD/FMN-containing dehydrogenase CHU_1781 26 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 110637480 Nonpathogen - hypothetical protein CHU_1070 2 None None None 110638224 Common - hypothetical protein CHU_1824 4 None None None 110636992 Common - conserved hypothetical protein; possible PAP2 superfamily protein CHU_0572 24 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 110636485 Common asnB glutamine-hydrolyzing asparagine synthetase B CHU_0058 161 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 110637256 Common - CHU large protein; uncharacterized CHU_0838 33 None None None 110638533 Common - hypothetical protein CHU_2137 103 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 110636984 Common - hypothetical protein CHU_0564 112 COG2353 COG2353, Uncharacterized conserved protein Function unknown 110636880 Common - hypothetical protein CHU_0458 88 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 110637618 Common - acetyltransferase with multiple hexapeptide repeat domains CHU_1212 214 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 110638804 Common clcB chloromuconate cycloisomerase CHU_2415 70 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 110639647 Nonpathogen - hypothetical protein CHU_3275 1 None None None 110636574 Common cheY response regulator, CheY-like CHU_0148 73 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 110636839 Common yiaD possible outer membrane protein CHU_0416 147 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110638981 Common - conserved hypothetical protein; thioredoxin domain CHU_2595 105 COG1331 COG1331, Highly conserved protein containing a thioredoxin domain Posttranslational modification, protein turnover, chaperones 110638769 Nonpathogen - hypothetical protein CHU_2378 1 None None None 110638686 Common yhdF short-chain dehydrogenase/reductase, probable oxidoreductase CHU_2292 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110639207 Common - pyrophosphohydrolase related protein CHU_2826 132 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 110639566 Nonpathogen - hypothetical protein CHU_3193 2 None None None 110636903 Nonpathogen - hypothetical protein CHU_0481 1 None None None 110637463 Common phrB deoxyribodipyrimidine photolyase (photoreactivation) CHU_1053 131 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 110638051 Common msrA peptide methionine sulfoxide reductase CHU_1649 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 110636518 Nonpathogen - hypothetical protein CHU_0091 1 None None None 110638200 Nonpathogen - hypothetical protein CHU_1800 2 None None None 110637658 Nonpathogen - hypothetical protein CHU_1253 7 None None None 110637589 Common uhpA response regulator, positive activator of uhpT transcription CHU_1181 62 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 110639552 Common phaB enoyl-CoA hydratase CHU_3179 173 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 110638357 Common phrB deoxyribodipyrimidine photolyase (photoreactivating enzyme) CHU_1958 131 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 110638016 Common ppiA peptidyl-prolyl cis-trans isomerase, cyclophilin-binding CHU_1613 199 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 110640102 Common terC membrane protein, TerC family CHU_3736 111 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 110636528 Nonpathogen - hypothetical protein CHU_0102 1 None None None 110639520 Common rplF 50S ribosomal protein L6 CHU_3147 237 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 110639386 Common recN DNA repair protein CHU_3012 208 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 110637460 Nonpathogen - hypothetical protein CHU_1050 1 None None None 110639826 Common - hypothetical protein CHU_3459 10 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 110637056 Common cysD sulfate adenylyltransferase subunit 2 CHU_0636 128 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 110638593 Common atoS two-component sensor histidine kinase (sensor protein AtoS) CHU_2197 206 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 110636810 Common yadG ABC transporter, ATP-binding protein; GldA-related gliding motility protein CHU_0387 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 110638729 Common - S1 RNA-binding domain protein CHU_2338 177 COG2183 Tex, Transcriptional accessory protein Transcription 110637060 Common - hypothetical protein CHU_0640 79 COG4121 COG4121, Uncharacterized conserved protein Function unknown 110636955 Nonpathogen - hypothetical protein CHU_0535 2 None None None 110637125 Common - ferrodoxin CHU_0705 81 COG3411 COG3411, Ferredoxin Energy production and conversion 110638988 Common treC candidate a-glycosidase, possible maltooligosyl trehalose synthase, Glycoside Hydrolase Family 13 protein CHU_2602 105 COG3280 TreY, Maltooligosyl trehalose synthase Carbohydrate transport and metabolism 110638861 Common frdB succinate dehydrogenase/fumarate reductase iron-sulfur subunit CHU_2474 156 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 110638879 Common - hypothetical protein CHU_2492 4 None None None 110638406 Common ydgJ probable oxidoreductase CHU_2007 150 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 110639312 Common - hypothetical protein CHU_2937 53 COG1479 COG1479, Uncharacterized conserved protein Function unknown 110637942 Common - conserved hypothetical protein, with TPR repeat CHU_1538 33 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 110638554 Common yahK Zn-binding alcohol dehydrogenase CHU_2158 186 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 110637449 Common - phosphohydrolase, HC superfamily CHU_1039 88 COG1078 COG1078, HD superfamily phosphohydrolases General function prediction only 110638751 Nonpathogen - hypothetical protein CHU_2360 3 None None None 110638347 Nonpathogen - hypothetical protein CHU_1948 1 None None None 110639607 Common thiO glycine/D-amino acid oxidase (deaminating) CHU_3234 25 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 110638756 Common - conserved hypothetical protein; leucine-rich repeat protein CHU_2365 17 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 110638812 Common - hypothetical protein CHU_2423 2 None None None 110639730 Common sucB dihydrolipoyllysine-residue succinyltransferase, component of 2-oxoglutarate dehydrogenase complex CHU_3361 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 110638216 Common cysE serine acetyltransferase CHU_1816 190 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 110636888 Common lipB lipoyltransferase CHU_0466 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 110638130 Nonpathogen - hypothetical protein CHU_1730 1 None None None 110638856 Common fabD [acyl-carrier protein] S-malonyltransferase CHU_2469 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 110636565 Common asd aspartate-semialdehyde dehydrogenase CHU_0139 236 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 110639165 Common - hypothetical protein CHU_2783 6 None None None 110639246 Common - hypothetical protein CHU_2865 11 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 110637031 Common birA biotin--[acetyl-CoA-carboxylase] ligase CHU_0611 224 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 110636808 Common dltC acyl carrier protein CHU_0385 47 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110637492 Common - OsmC-like family protein CHU_1082 35 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 110639531 Common rpsS 30S ribosomal protein S19 CHU_3158 241 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 110639594 Nonpathogen - hypothetical protein CHU_3221 1 None None None 110639711 Nonpathogen - hypothetical protein CHU_3342 1 None None None 110639275 Common fbp fructose-1,6-bisphosphatase CHU_2896 108 COG0158 Fbp, Fructose-1,6-bisphosphatase Carbohydrate transport and metabolism 110637904 Common - regulator with DNA binding domain CHU_1500 33 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110636668 Common thiG thiazole synthase CHU_0243 166 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 110636819 Common ycaK probable oxidoreductase; possible NAD(P)H dehydrogenase, quinone family CHU_0396 75 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 110639173 Nonpathogen - hypothetical protein CHU_2791 1 None None None 110639155 Common pfkA 6-phosphofructokinase CHU_2773 159 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 110637224 Common - CHU large protein; uncharacterized CHU_0804 24 None None None 110637538 Common pheT phenylalanyl-tRNA synthetase subunit beta CHU_1130 234 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 110638287 Common mrcA candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase, candidate murein polymerase, glycosyltransferase family 51 protein CHU_1888 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 110638081 Common dnaQ DNA polymerase III, epsilon subunit CHU_1680 198 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 110638564 Common gatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase, subunit A CHU_2168 120 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 110637406 Common serA phosphoserine phosphatase and phosphoglycerate dehydrogenase (D-3-phosphoglycerate dehydrogenase) fusion CHU_0996 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 110638229 Nonpathogen - hypothetical protein CHU_1829 1 None None None 110639308 Nonpathogen - hypothetical protein CHU_2933 1 None None None 110638712 Nonpathogen - hypothetical protein CHU_2318 1 None None None 110637989 Common fabF 3-oxoacyl-[acyl-carrier-protein] synthase II CHU_1586 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110636878 Nonpathogen - hypothetical protein CHU_0456 3 None None None 110639984 Nonpathogen - hypothetical protein CHU_3618 1 None None None 110636547 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_0121 128 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110638398 Common - CBS-domain-containing membrane protein CHU_1999 71 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 110638373 Nonpathogen - hypothetical protein CHU_1974 1 None None None 110638382 Common kdpB potassium-transporting ATPase, subunit B CHU_1983 232 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism 110636701 Common - superfamily I DNA helicase CHU_0277 86 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 110637011 Common - siderophore biosynthesis protein CHU_0591 56 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 110636941 Common - conserved hypothetical protein, possibly involved in heme utilization CHU_0521 21 COG4447 COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor General function prediction only 110637430 Common yfbL possible aminopeptidase CHU_1020 50 COG2234 Iap, Predicted aminopeptidases General function prediction only 110639072 Nonpathogen - conserved hypothetical protein, with TPR repeat CHU_2687 1 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 110639540 Common - hypothetical protein CHU_3167 15 None None None 110637606 Common - conserved hypothetical protein; possible permease CHU_1198 72 COG0795 COG0795, Predicted permeases General function prediction only 110637525 Nonpathogen - hypothetical protein CHU_1117 3 None None None 110636501 Common thrB homoserine kinase CHU_0074 120 COG0083 ThrB, Homoserine kinase Amino acid transport and metabolism 110637968 Common paaE phenylacetate-CoA oxygenase/reductase, PaaK subunit CHU_1564 170 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 110638454 Nonpathogen - hypothetical protein CHU_2058 1 None None None 110636739 Common yhfE aminopeptidase CHU_0315 86 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 110637144 Common - conserved hypothetical protein (possible chromosome segregation ATPase) CHU_0724 7 None None None 110639581 Nonpathogen - hypothetical protein CHU_3208 1 None None None 110639818 Common - conserved hypothetical protein, with fibronectin domain CHU_3451 11 COG3401 COG3401, Fibronectin type 3 domain-containing protein General function prediction only 110637004 Nonpathogen - hypothetical protein CHU_0584 1 None None None 110638102 Common - anti-anti-sigma regulatory factor CHU_1702 38 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 110639875 Nonpathogen - hypothetical protein CHU_3509 1 None None None 110639291 Common - hypothetical protein CHU_2916 12 COG4430 COG4430, Uncharacterized protein conserved in bacteria Function unknown 110639741 Nonpathogen - hypothetical protein CHU_3372 1 None None None 110637909 Common - hypothetical protein CHU_1505 42 None None None 110639885 Common - hypothetical protein CHU_3519 140 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 110637592 Common - hypothetical protein CHU_1184 3 COG1485 COG1485, Predicted ATPase General function prediction only 110639549 Common asnC asparaginyl-tRNA synthetase CHU_3176 236 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 110636737 Common rsaD ABC transporter, ATP-binding/membrane-spanning protein CHU_0313 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 110638280 Common lexA transcriptional regulator CHU_1881 20 COG1476 COG1476, Predicted transcriptional regulators Transcription 110638135 Common glnA glutamine synthetase CHU_1735 171 COG3968 COG3968, Uncharacterized protein related to glutamine synthetase General function prediction only 110637425 Common yncD probable tonB-dependent receptor CHU_1015 55 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110636540 Nonpathogen - hypothetical protein CHU_0114 1 None None None 110637287 Nonpathogen - hypothetical protein CHU_0871 1 None None None 110638510 Common fabF possible 3-oxoacyl-[acyl-carrier-protein] synthase CHU_2114 9 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110636974 Common - hypothetical protein CHU_0554 6 None None None 110636631 Nonpathogen - hypothetical protein CHU_0206 1 None None None 110639501 Common yisS oxidoreductase-dehydrogenase CHU_3128 158 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 110638155 Common pdhC dihydrolipoyllysine-residue acetyltransferase (dihydrolipoamide S-acetyltransferase) CHU_1755 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 110637786 Common - NADH dehydrogenase I, chain B CHU_1381 192 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 110636468 Common - hypothetical protein CHU_0041 8 None None None 110638435 Nonpathogen - hypothetical protein CHU_2039 6 None None None 110640065 Common - hypothetical protein CHU_3699 68 COG3238 COG3238, Uncharacterized protein conserved in bacteria Function unknown 110637490 Common - hypothetical protein CHU_1080 10 None None None 110639572 Common gspF type II general secretion pathway (GSP) F protein CHU_3199 148 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 110639351 Common bioD dethiobiotin synthetase CHU_2977 150 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 110639902 Common yiaD possible outer membrane protein CHU_3536 164 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110639006 Nonpathogen - hypothetical protein CHU_2621 1 None None None 110636533 Common - hypothetical protein CHU_0107 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 110638040 Nonpathogen - hypothetical protein CHU_1638 1 None None None 110637717 Common dapA dihydrodipicolinate synthase CHU_1312 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 110638493 Nonpathogen - hypothetical protein CHU_2097 1 None None None 110637385 Common - aminotransferase class 5 protein; possible selenocysteine lyase CHU_0975 239 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 110637755 Common - hypothetical protein CHU_1350 12 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 110639149 Common - UDP-N-acetylglucosamine 4,6-dehydratase; UDP-4-dehydro-6-deoxy-2-acetamido-D-glucose 4-reductase CHU_2766 203 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110636508 Common - hypothetical protein CHU_0465 130 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 110639192 Nonpathogen - hypothetical protein CHU_2811 1 None None None 110639789 Common - hypothetical protein CHU_3420 86 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 110640020 Common - CHU large protein; uncharacterized CHU_3654 38 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 110640157 Nonpathogen - hypothetical protein CHU_3792 2 None None None 110639481 Common ppa inorganic pyrophosphatase CHU_3108 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 110640032 Nonpathogen - hypothetical protein CHU_3666 1 None None None 110637838 Common metH methionine synthase I CHU_1434 165 COG1410 MetH, Methionine synthase I, cobalamin-binding domain Amino acid transport and metabolism 110639008 Nonpathogen - hypothetical protein CHU_2623 1 None None None 110637422 Common - RNA pseudouridylate synthase, small subunit CHU_1012 195 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 110637397 Common yigR probable protein kinase CHU_0987 184 COG0661 AarF, Predicted unusual protein kinase General function prediction only 110640114 Nonpathogen - hypothetical protein CHU_3748 1 None None None 110638896 Common - conserved hypothetical protein, WxcM-like CHU_2509 23 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 110636673 Nonpathogen - hypothetical protein CHU_0248 2 None None None 110639250 Common - CHU large protein; uncharacterized CHU_2870 17 None None None 110636747 Nonpathogen dnaJ DNAJ-like chaperone; heat shock protein CHU_0324 1 COG1107 COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain DNA replication, recombination, and repair 110636961 Common - hypothetical protein CHU_0541 3 None None None 110637751 Nonpathogen - hypothetical protein CHU_1346 1 None None None 110636704 Nonpathogen - hypothetical protein CHU_0280 1 None None None 110636824 Nonpathogen - hypothetical protein CHU_0401 2 None None None 110640014 Common ndk nucleoside diphosphate kinase CHU_3648 229 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 110639233 Common - CHU large protein; candidate b-glycosidase, glycoside hydrolase family 8 protein CHU_2852 43 COG3405 CelA, Endoglucanase Y Carbohydrate transport and metabolism 110638128 Nonpathogen - hypothetical protein CHU_1728 1 None None None 110640193 Common - hypothetical protein CHU_3828 25 COG1873 COG1873, Uncharacterized conserved protein Function unknown 110637932 Common tpn transposase CHU_1528 4 COG5543 COG5543, Uncharacterized conserved protein Function unknown 110638786 Common folA dihydrofolate reductase CHU_2397 40 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 110638515 Common - possible thioesterase CHU_2119 65 COG0824 FcbC, Predicted thioesterase General function prediction only 110637135 Common - hypothetical protein CHU_0715 28 COG0824 FcbC, Predicted thioesterase General function prediction only 110638648 Common osmC osmotically inducible protein CHU_2252 80 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 110637159 Nonpathogen - hypothetical protein CHU_0739 1 None None None 110638399 Common - conserved hypothetical protein; possible NADH:ubiquinone oxidoreductase CHU_2000 4 COG1287 COG1287, Uncharacterized membrane protein, required for N-linked glycosylation General function prediction only 110638388 Common - transcriptional regulator, AraC family CHU_1989 83 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110637451 Common cab probable carbonate dehydratase (carbonic anhydrase) CHU_1041 147 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 110637354 Common acrA acriflavine resistance protein E CHU_0942 168 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110636597 Common gldL gliding motility-related protein CHU_0172 6 None None None 110637315 Common ugd UDP-glucose 6-dehydrogenase CHU_0901 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 110637374 Common - hypothetical protein CHU_0964 6 None None None 110639428 Common - conserved hypothetical protein; predicted secreted surface protein CHU_3054 70 COG2335 COG2335, Secreted and surface protein containing fasciclin-like repeats Cell envelope biogenesis, outer membrane 110639256 Common - cyclic nucleotide binding regulatory protein CHU_2876 28 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110639420 Common arcB two-component sensor histidine kinase CHU_3046 222 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110639083 Common - gliding motility-related protein; possible outer membrane protein CHU_2699 6 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 110638977 Common rpsF 30S ribosomal protein S6 CHU_2591 199 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 110637325 Nonpathogen - hypothetical protein CHU_0911 1 None None None 110637980 Common speA arginine decarboxylase, biosynthetic CHU_1576 86 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 110636676 Common gap glyceraldehyde-3-phosphate dehydrogenase CHU_0251 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 110639097 Common yiaD possible outer membrane protein CHU_2714 152 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110638609 Common - cytochrome c, mono- and diheme variant CHU_2213 28 COG3474 COG3474, Cytochrome c2 Energy production and conversion 110638368 Common nrtA ABC-type nitrate/sulfonate/taurine/bicarbonate transporter, substrate binding protein CHU_1969 77 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 110637886 Nonpathogen - hypothetical protein CHU_1482 1 None None None 110639106 Common fur ferric uptake regulation protein CHU_2723 181 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 110638770 Common - CHU large protein; candidate xylanase, CBM9 module, Glycoside Hydrolase Family 11 protein CHU_2379 20 None None None 110637076 Common - probable aldose-1-epimerase CHU_0656 56 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 110638304 Nonpathogen - hypothetical protein CHU_1905 1 None None None 110639861 Common purF amidophosphoribosyltransferase CHU_3495 165 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 110637578 Nonpathogen - hypothetical protein CHU_1170 1 None None None 110638328 Common yciA possible acyl-CoA thioester hydrolase CHU_1929 138 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 110639257 Common - luciferase-like monooxygenase family protein CHU_2877 111 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 110639212 Common pduO probable cobalamin adenosyltransferase CHU_2831 131 COG2096 COG2096, Uncharacterized conserved protein Function unknown 110637669 Common ureH urease accessory protein CHU_1264 27 COG0829 UreH, Urease accessory protein UreH Posttranslational modification, protein turnover, chaperones 110639559 Common - hypothetical protein CHU_3186 8 None None None 110638744 Common - transposase CHU_2353 21 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 110637247 Common - phosphohydrolase, MutT family CHU_0828 94 COG1408 COG1408, Predicted phosphohydrolases General function prediction only 110638392 Common - hypothetical protein CHU_1993 9 None None None 110637308 Common - a-glycosyltransferase, glycosyltransferase family 4 protein CHU_0894 222 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110638523 Common - hypothetical protein CHU_2127 12 COG4927 COG4927, Predicted choloylglycine hydrolase General function prediction only 110639773 Common - hypothetical protein CHU_3404 154 COG1610 COG1610, Uncharacterized conserved protein Function unknown 110636475 Nonpathogen - hypothetical protein CHU_0048 1 None None None 110637230 Common ydcN transcriptional regulator CHU_0810 17 COG1476 COG1476, Predicted transcriptional regulators Transcription 110637237 Nonpathogen - hypothetical protein CHU_0817 1 None None None 110638545 Common - CHU large protein; candidate retaining b-glycosidase, glycoside hydrolase family 5 protein CHU_2149 45 None None None 110639267 Common - conserved hypothetical protein; possible response regulator CHU_2887 41 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110638573 Common - membrane protein of EXOQ family/lipid A core - O-antigen ligase CHU_2177 4 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 110638957 Nonpathogen - hypothetical protein CHU_2571 1 None None None 110636658 Common hsp20 small heat shock protein CHU_0233 155 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 110639377 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_3003 211 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110637195 Common - membrane protease (metal dependent; CAAX family) CHU_0775 6 None None None 110636590 Common hemN coproporphyrinogen oxidase (coproporphyrinogen III oxidase) CHU_0165 207 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 110636843 Common - hypothetical protein CHU_0420 19 None None None 110637768 Nonpathogen - hypothetical protein CHU_1363 1 None None None 110636865 Common - hypothetical protein CHU_0443 2 None None None 110637203 Common rfaE pfkB family carbohydrate kinase CHU_0783 126 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 110636511 Common pyrB aspartate carbamoyltransferase, catalytic subunit CHU_0084 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 110636910 Common pyrR uracil phosphoribosyltransferase/pyrimidine operon attenuation protein CHU_0488 84 COG2065 PyrR, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase Nucleotide transport and metabolism 110637478 Common yhfC transport protein, MFS family CHU_1068 80 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 110639347 Common - competence protein CHU_2973 175 COG0658 ComEC, Predicted membrane metal-binding protein General function prediction only 110640204 Common nhaP sodium/hydrogen antiporter CHU_3839 109 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 110638973 Common apaG ApaG CHU_2587 89 COG2967 ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport Inorganic ion transport and metabolism 110636660 Nonpathogen - hypothetical protein CHU_0235 1 None None None 110638350 Common rpsA 30S ribosomal protein S1 CHU_1951 217 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 110637274 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_0858 152 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 110638416 Common - hypothetical protein CHU_2017 6 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 110636628 Common ribD bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase CHU_0203 229 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 110638932 Common - hypothetical protein CHU_2546 9 COG3152 COG3152, Predicted membrane protein Function unknown 110636640 Nonpathogen - hypothetical protein CHU_0215 1 None None None 110637285 Common - a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0869 206 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110639966 Common - hypothetical protein CHU_3600 14 None None None 110637700 Nonpathogen - hypothetical protein CHU_1295 1 None None None 110639468 Common - hypothetical protein CHU_3095 6 None None None 110636544 Common rimM 16S rRNA processing protein CHU_0118 74 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 110636432 Common dedA integral membrane protein; possible DedA family protein CHU_0005 171 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 110637037 Common - outer membrane protein CHU_0617 22 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110637030 Common sahH S-adenosyl-L-homocysteine hydrolase CHU_0610 176 COG0499 SAM1, S-adenosylhomocysteine hydrolase Coenzyme metabolism 110636470 Nonpathogen - hypothetical protein CHU_0043 1 None None None 110638481 Common ompR response regulator, with CheY-like and DNB-binding domains CHU_2085 220 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 110639064 Common - probable outer membrane lipoprotein P61 CHU_2679 5 None None None 110637419 Nonpathogen - hypothetical protein CHU_1009 7 None None None 110639636 Nonpathogen - hypothetical protein CHU_3264 1 None None None 110639941 Common - hemoglobin-like protein CHU_3575 68 COG2346 COG2346, Truncated hemoglobins General function prediction only 110639359 Common rsaD ABC-type organic solvent transporter, ATP-binding protein CHU_2985 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 110639720 Common hsdS type I site-specific deoxyribonuclease S subunit CHU_3351 60 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 110638562 Common gloA lactoylglutathione lyase CHU_2166 24 COG3324 COG3324, Predicted enzyme related to lactoylglutathione lyase General function prediction only 110638431 Common - transcriptional regulator, MerR family CHU_2032 47 COG0789 SoxR, Predicted transcriptional regulators Transcription 110637623 Common - anti-sigma regulatory factor; Ser/Thr protein kinase CHU_1217 36 COG2172 RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) Signal transduction mechanisms 110639796 Nonpathogen - hypothetical protein CHU_3427 1 None None None 110636795 Common yjeS iron-sulfur cluster binding protein CHU_0372 134 COG1600 COG1600, Uncharacterized Fe-S protein Energy production and conversion 110638302 Nonpathogen - hypothetical protein CHU_1903 1 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 110639326 Nonpathogen - hypothetical protein CHU_2951 1 None None None 110638460 Common - probable oxidoreductase (probable short-chain dehydrogenase) CHU_2064 236 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110638991 Common - hypothetical protein CHU_2605 3 None None None 110638316 Common - outer membrane protein CHU_1917 21 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 110637876 Common flgJ peptidoglycan hydrolase, glycoside hydrolase family 73 protein CHU_1472 67 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 110636449 Common - hypothetical protein CHU_0022 4 None None None 110637074 Common pip possible phosphatidylinositol-4-phosphate 5-kinase CHU_0654 25 COG4642 COG4642, Uncharacterized protein conserved in bacteria Function unknown 110638412 Common - phosphate ABC transporter, phosphate-binding component CHU_2013 5 None None None 110640003 Common rocF arginase CHU_3637 103 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 110639112 Nonpathogen - hypothetical protein CHU_2729 2 None None None 110639020 Common cysG siroheme synthase (precorrin-2 oxidase) CHU_2635 142 COG1648 CysG, Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) Coenzyme metabolism 110638655 Common - cyclic nucleotide binding regulatory protein CHU_2259 21 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110638903 Common - transcriptional regulator, tetR family CHU_2516 34 COG1309 AcrR, Transcriptional regulator Transcription 110639733 Common - hypothetical protein CHU_3364 45 COG4102 COG4102, Uncharacterized protein conserved in bacteria Function unknown 110638031 Common - magnesium transporter, MgtE CHU_1629 172 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 110639835 Common arcB sensor histidine kinase CHU_3468 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110638329 Common - hypothetical protein CHU_1930 10 COG2353 COG2353, Uncharacterized conserved protein Function unknown 110636491 Nonpathogen - hypothetical protein CHU_0064 1 None None None 110637299 Common - a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0885 39 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110637597 Common - hypothetical protein CHU_1189 2 None None None 110638867 Nonpathogen - hypothetical protein CHU_2480 1 None None None 110637368 Common rfaD ADP-L-glycero-D-mannoheptose-6-epimerase CHU_0958 232 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110639899 Common - two-component sensor histidine kinase CHU_3533 186 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110639992 Common greA transcription elongation factor CHU_3626 150 COG0782 GreA, Transcription elongation factor Transcription 110640053 Common - DNA-binding protein HU CHU_3687 158 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 110639197 Common - hypothetical protein CHU_2816 25 COG1694 MazG, Predicted pyrophosphatase General function prediction only 110640089 Common - permease of the major facilitator superfamily CHU_3723 35 COG2270 COG2270, Permeases of the major facilitator superfamily General function prediction only 110639431 Common - transposase CHU_3057 9 None None None 110637637 Nonpathogen - hypothetical protein CHU_1231 1 None None None 110637947 Common trmB tRNA (guanine-N(7)-)-methyltransferase CHU_1543 105 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 110639478 Nonpathogen - CHU large protein; uncharacterized CHU_3105 4 None None None 110639119 Common ftsA cell division protein A CHU_2736 193 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 110640200 Common panC pantoate--beta-alanine ligase CHU_3835 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 110639918 Nonpathogen - hypothetical protein CHU_3552 3 COG4980 GvpP, Gas vesicle protein General function prediction only 110638488 Common - hypothetical protein CHU_2092 34 COG5587 COG5587, Uncharacterized conserved protein Function unknown 110638927 Common - protease CHU_2541 5 None None None 110639479 Common - hypothetical protein CHU_3106 9 None None None 110638111 Nonpathogen - hypothetical protein CHU_1711 1 None None None 110637632 Common - probable methyltransferase CHU_1226 186 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110637069 Common rpmG 50S ribosomal protein L33 CHU_0649 46 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 110637106 Common - hypothetical protein CHU_0686 20 COG4365 COG4365, Uncharacterized protein conserved in bacteria Function unknown 110640026 Common - conserved hypothetical protein; possible WD-repeat family member CHU_3660 75 COG2319 COG2319, FOG: WD40 repeat General function prediction only 110640106 Common - hypothetical protein CHU_3740 21 COG4867 COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain General function prediction only 110638971 Common - hypothetical protein CHU_2585 5 None None None 110639143 Common - polysaccharide biosynthesis protein; possible glycosyltransferase CHU_2760 33 COG3980 spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase Cell envelope biogenesis, outer membrane 110638782 Common - transcriptional regulator CHU_2392 123 COG1733 COG1733, Predicted transcriptional regulators Transcription 110637560 Common - hypothetical protein CHU_1152 22 COG3358 COG3358, Uncharacterized conserved protein Function unknown 110636901 Nonpathogen - hypothetical protein CHU_0479 1 None None None 110639699 Nonpathogen - hypothetical protein CHU_3330 7 None None None 110640027 Common - hypothetical protein CHU_3661 7 None None None 110638161 Common - metalloprotease CHU_1761 87 COG2321 COG2321, Predicted metalloprotease General function prediction only 110638344 Nonpathogen - hypothetical protein CHU_1945 1 None None None 110637646 Nonpathogen - hypothetical protein CHU_1241 2 None None None 110639163 Common - a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_2781 45 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110639604 Common - outer membrane protein CHU_3231 14 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110636853 Nonpathogen - hypothetical protein CHU_0431 1 None None None 110637821 Common - hypothetical protein CHU_1417 74 COG2989 COG2989, Uncharacterized protein conserved in bacteria Function unknown 110637849 Common - transcriptional regulator CHU_1445 89 COG0789 SoxR, Predicted transcriptional regulators Transcription 110638702 Common - hydrolase, alpha/beta fold family CHU_2308 183 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110639122 Common murG N-acetylglucosaminyl transferase CHU_2739 208 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 110640207 Common - a-glycosyltransferase, glycosyltransferase family 4 protein CHU_3842 159 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110638547 Common - hypothetical protein CHU_2151 18 None None None 110638999 Common nuoN NADH dehydrogenase I chain N CHU_2613 209 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 110639853 Common - NADH:flavin oxidoreductase family protein CHU_3487 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 110639979 Nonpathogen - hypothetical protein CHU_3613 1 None None None 110640044 Nonpathogen - hypothetical protein CHU_3678 1 None None None 110636557 Nonpathogen - hypothetical protein CHU_0131 1 None None None 110636861 Nonpathogen - hypothetical protein CHU_0439 1 None None None 110639961 Common fadD long-chain-fatty-acid--CoA ligase (acyl-CoA synthetase) CHU_3595 217 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 110637363 Common rpoE RNA polymerase, sigma-E factor; heat shock and oxidative stress CHU_0953 14 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110636479 Common degQ serine protease CHU_0052 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 110638643 Nonpathogen - hypothetical protein CHU_2247 9 None None None 110640057 Common gldB gliding motility protein CHU_3691 5 None None None 110637712 Common gpsA glycerol-3-phosphate dehydrogenase (NAD+) CHU_1307 211 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 110640059 Common asnB asparagine synthetase B CHU_3693 147 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 110637719 Common mtgA candidate monofunctional peptidoglycan glycosyltransferase, Glycosyltransferase Family 51 protein CHU_1314 199 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 110637884 Nonpathogen - hypothetical protein CHU_1480 1 None None None 110637951 Common gldG possible gliding motility protein, possible ABC-related protein CHU_1547 30 COG3225 GldG, ABC-type uncharacterized transport system involved in gliding motility, auxiliary component Cell motility and secretion 110640138 Common arnT 4-amino-4-deoxy-L-arabinose transferase (lipid A modification) CHU_3773 10 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 110637653 Common - hypothetical protein CHU_1248 9 None None None 110638569 Common - tatD-related DNase CHU_2173 237 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 110637676 Common hisH imidazole glycerol phosphate synthase subunit HisH CHU_1271 218 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 110636807 Common fabF 3-oxoacyl-[acyl-carrier-protein] synthase II CHU_0384 209 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110638047 Common rplT 50S ribosomal protein L20 CHU_1645 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 110639784 Common ompH outer membrane protein, ompH family CHU_3415 26 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 110639525 Common rplN 50S ribosomal protein L14 CHU_3152 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 110639392 Common tilS tRNA(Ile)-lysidine synthetase CHU_3018 209 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 110637088 Common - hypothetical protein CHU_0668 17 COG3489 COG3489, Predicted periplasmic lipoprotein General function prediction only 110637924 Nonpathogen - hypothetical protein CHU_1520 1 None None None 110636781 Common cdsA phosphatidate cytidylyltransferase (CDP-diglyceride synthetase) CHU_0358 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 110636550 Common - hypothetical protein CHU_0124 4 None None None 110638710 Nonpathogen - hypothetical protein CHU_2316 4 COG3545 COG3545, Predicted esterase of the alpha/beta hydrolase fold General function prediction only 110639028 Common - possible transcriptional regulator, MarR family CHU_2643 10 COG1846 MarR, Transcriptional regulators Transcription 110639651 Nonpathogen - hypothetical protein CHU_3279 1 None None None 110636687 Common - RNA polymerase sigma factor (possible RNA polymerase sigma-24 factor) CHU_0262 41 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110638206 Common - hypothetical protein CHU_1806 62 COG1579 COG1579, Zn-ribbon protein, possibly nucleic acid-binding General function prediction only 110640079 Nonpathogen - hypothetical protein CHU_3713 2 None None None 110636648 Common atoS sensor histidine kinase CHU_0223 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110636458 Nonpathogen - conserved hypothetical protein; possible integral membrane protein CHU_0031 6 COG5652 COG5652, Predicted integral membrane protein Function unknown 110638833 Common ttuC conserved hypothetical protein; possible tartrate dehydrogenase CHU_2445 43 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 110639640 Common - peptidyl-prolyl cis-trans isomerase CHU_3268 121 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 110638970 Nonpathogen - hypothetical protein CHU_2584 1 None None None 110639240 Common acrA acridine efflux pump CHU_2859 150 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110638586 Nonpathogen - hypothetical protein CHU_2190 1 None None None 110636760 Common atpC H+-transporting two-sector ATPase, epsilon subunit CHU_0337 123 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 110639981 Nonpathogen - hypothetical protein CHU_3615 1 None None None 110640166 Nonpathogen - hypothetical protein CHU_3801 1 None None None 110639638 Common uvrD DNA-dependent ATPase I and helicase II CHU_3266 231 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 110637260 Common - hypothetical protein CHU_0844 3 None None None 110639882 Common - hypothetical protein CHU_3516 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 110639527 Common rpmC 50S ribosomal protein L29 CHU_3154 9 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 110637776 Common nuoL NADH dehydrogenase I chain L CHU_1371 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 110640012 Nonpathogen - hypothetical protein CHU_3646 1 None None None 110637616 Common ispE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase CHU_1210 142 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 110639296 Nonpathogen - hypothetical protein CHU_2921 2 None None None 110638183 Common nhaP Na+/H+ antiporter CHU_1783 169 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 110638146 Common - conserved hypothetical protein; possible ribosome-associated protein CHU_1746 18 None None None 110638067 Common - pirin-related protein CHU_1666 141 COG1741 COG1741, Pirin-related protein General function prediction only 110639012 Common prsA ribose-phosphate pyrophosphokinase CHU_2627 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 110636933 Common nuoD NADH dehydrogenase I, subunit D CHU_0512 191 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 110640184 Common pstC phosphate ABC transporter, permease component CHU_3819 232 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 110638333 Common - CHU large protein; uncharacterized CHU_1934 35 None None None 110639590 Common atoS two-component sensor histidine kinase CHU_3217 214 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110637791 Common rfaD ADP-glyceromanno-heptose 6-epimerase (ADP-L-glycero-D-mannoheptose-6-epimerase) CHU_1387 185 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110637627 Common - CHU large protein; glucose/sorbosone dehydrogenase-related CHU_1221 126 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 110639443 Common yheR possible NAD(P)H oxidoreductase CHU_3069 58 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 110636572 Common spoU RNA methylase, SpoU family CHU_0146 171 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 110638809 Common - hypothetical protein CHU_2420 184 COG0759 COG0759, Uncharacterized conserved protein Function unknown 110639954 Common - probable DNA helicase CHU_3588 75 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 110638369 Common - hypothetical protein CHU_1970 6 None None None 110637258 Common - CHU large protein; uncharacterized CHU_0841 86 None None None 110639767 Common xerC integrase CHU_3398 228 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 110638693 Nonpathogen - hypothetical protein CHU_2299 4 None None None 110637253 Common - CHU large protein CHU_0834 36 None None None 110637140 Common pdh proline dehydrogenase CHU_0720 70 COG0506 PutA, Proline dehydrogenase Amino acid transport and metabolism 110638802 Common - probable cinnamyl-alcohol dehydrogenase CHU_2413 102 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110639649 Common tpiA triosephosphate isomerase CHU_3277 216 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 110636890 Common - general stress protein CHU_0468 42 COG3871 COG3871, Uncharacterized stress protein (general stress protein 26) General function prediction only 110638506 Common fabZ 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase CHU_2110 4 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 110636882 Common - conserved hypothetical protein; possible rhomboid-like protein CHU_0460 68 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 110639336 Nonpathogen - hypothetical protein CHU_2961 1 None None None 110638614 Nonpathogen - hypothetical protein CHU_2218 7 COG1583 COG1583, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 110638203 Common - hypothetical protein CHU_1803 6 None None None 110636986 Common - hypothetical protein CHU_0566 8 COG2259 COG2259, Predicted membrane protein Function unknown 110639084 Common ftsK cell division protein CHU_2700 198 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 110639847 Common rluD pseudouridylate synthase, 23S RNA-specific CHU_3480 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 110636612 Common ompA peptidoglycan-associated outer membrane protein CHU_0187 170 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110639397 Common - hypothetical protein CHU_3023 3 None None None 110639204 Common - conserved hypothetical protein; possible 2-phosphosulpholactate phosphatase CHU_2823 48 COG2045 COG2045, Phosphosulfolactate phosphohydrolase and related enzymes Coenzyme metabolism / General function prediction only 110639317 Common - hypothetical protein CHU_2942 2 None None None 110639974 Nonpathogen - hypothetical protein CHU_3608 2 None None None 110639495 Common dnaJ chaperone with DnaK; heat shock protein CHU_3122 44 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 110636997 Common pyrH uridylate kinase CHU_0577 242 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 110639017 Nonpathogen - hypothetical protein CHU_2632 1 None None None 110638260 Common hisD histidinol dehydrogenase CHU_1861 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 110639718 Common hsdR type I restriction-modification system R subunit CHU_3349 140 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 110637594 Common - hypothetical protein CHU_1186 2 None None None 110638668 Common bglX candidate b-glucosidase, Glycoside Hydrolase Family 3 protein CHU_2273 138 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 110637507 Common araC transcriptional regulator for ara operon CHU_1097 76 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110637602 Common gidB glucose-inhibited division protein B CHU_1194 196 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 110637797 Common - Zn-dependent protease with chaperone function CHU_1393 62 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 110637352 Common ycdC transcriptional regulator CHU_0940 70 COG1309 AcrR, Transcriptional regulator Transcription 110640007 Common - hypothetical protein CHU_3641 86 COG3384 COG3384, Uncharacterized conserved protein Function unknown 110637331 Nonpathogen - hypothetical protein CHU_0917 1 None None None 110640084 Common acoA pyruvate dehydrogenase E1 component alpha subunit CHU_3718 154 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 110637534 Nonpathogen - hypothetical protein CHU_1126 1 None None None 110639561 Nonpathogen - hypothetical protein CHU_3188 1 None None None 110638698 Common - alpha-tubulin suppressor CHU_2304 32 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 110638608 Common nrfC molybdopterin oxidoreductase, iron-sulfur binding subunit CHU_2212 131 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 110639458 Common argF ornithine carbamoyltransferase CHU_3085 236 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 110637725 Common napA periplasmic nitrate reductase/nitrite reductase CHU_1320 229 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 110637733 Nonpathogen - hypothetical protein CHU_1328 1 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 110639410 Common tsf elongation factor Ts (EF-Ts) CHU_3036 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 110636830 Nonpathogen - hypothetical protein CHU_0407 2 None None None 110638389 Common yohF possible oxidoreductase CHU_1990 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110639611 Common - hypothetical protein CHU_3238 7 None None None 110637547 Nonpathogen - hypothetical protein CHU_1139 1 None None None 110636619 Common spoIIAA anti-sigma F factor antagonist CHU_0194 69 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 110639709 Common - hypothetical protein CHU_3340 7 None None None 110638118 Common - hypothetical protein CHU_1718 4 None None None 110638883 Common - endoribonuclease, inhibits protein synthesis CHU_2496 84 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 110639665 Common trpC indole-3-glycerolphosphate synthase CHU_3293 219 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 110638473 Common arcB sensor histidine kinase/response regulator fusion protein (sensor for arcA) CHU_2077 225 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110637442 Common - conserved hypothetical protein, possible lysophospholipase CHU_1032 9 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 110637893 Common - conserved hypothetical protein with helix-turn-helix motif CHU_1489 46 COG2856 COG2856, Predicted Zn peptidase Amino acid transport and metabolism 110637917 Common - transcriptional regulator, ArsR family CHU_1513 91 COG0640 ArsR, Predicted transcriptional regulators Transcription 110637683 Nonpathogen - hypothetical protein CHU_1278 1 None None None 110640073 Common - hypothetical protein CHU_3707 6 None None None 110639988 Nonpathogen - hypothetical protein CHU_3622 4 COG5285 COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin Secondary metabolites biosynthesis, transport, and catabolism 110637048 Common - flavoprotein CHU_0628 135 COG2081 COG2081, Predicted flavoproteins General function prediction only 110638440 Common - CHU large protein; b-xylosidase/a-L-arabinofuranosidase related, CBM6 and CBM9 modules, glycoside hydrolase family 43 protein CHU_2044 61 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 110638458 Nonpathogen - hypothetical protein CHU_2062 1 None None None 110637694 Common thyA thymidylate synthetase CHU_1289 141 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 110639147 Nonpathogen - hypothetical protein CHU_2764 1 None None None 110636680 Common ypdA possible sensor protein CHU_0255 111 COG2972 COG2972, Predicted signal transduction protein with a C-terminal ATPase domain Signal transduction mechanisms 110639181 Common zraS sensor kinase of Zn/Pb responsive two-component regulatory system CHU_2800 208 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 110638799 Common - hypothetical protein CHU_2410 14 COG4815 COG4815, Uncharacterized protein conserved in bacteria Function unknown 110639271 Common wcaL a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_2892 133 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110638495 Common - hypothetical protein CHU_2099 17 COG1262 COG1262, Uncharacterized conserved protein Function unknown 110639824 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_3457 99 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 110638098 Nonpathogen - hypothetical protein CHU_1697 1 None None None 110638451 Common - leucine-rich protein CHU_2055 51 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 110636486 Common gmd GDP-D-mannose dehydratase CHU_0059 225 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 110637359 Common bacA undecaprenol kinase (bacitracin resistance protein) CHU_0949 200 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 110639216 Common - hypothetical protein CHU_2835 32 COG1415 COG1415, Uncharacterized conserved protein Function unknown 110637023 Common - polysaccharide deacetylase CHU_0603 81 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 110639840 Common - hypothetical protein CHU_3473 5 None None None 110639053 Common - hypothetical protein CHU_2668 3 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 110640210 Common secE preprotein translocase CHU_3174a 4 None None None 110640175 Common - glycogen debranching enzyme CHU_3810 42 COG3408 GDB1, Glycogen debranching enzyme Carbohydrate transport and metabolism 110640121 Common - tonB-linked outer membrane receptor P92 CHU_3755 93 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110637808 Common gnd gluconokinase and phosphogluconate dehydrogenase (decarboxylating) fusion CHU_1404 167 COG0362 Gnd, 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 110640139 Nonpathogen - conserved hypothetical protein; possible histidine kinase CHU_3774 2 None None None 110639557 Nonpathogen - hypothetical protein CHU_3184 1 None None None 110636435 Common uvrB excinuclease ABC subunit B CHU_0008 232 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 110636867 Nonpathogen - hypothetical protein CHU_0445 4 None None None 110638678 Common - membrane protein CHU_2284 9 COG1950 COG1950, Predicted membrane protein Function unknown 110638384 Common - hypothetical protein CHU_1985 7 None None None 110639538 Common rpsG 30S ribosomal protein S7 CHU_3165 247 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 110637222 Common - a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0802 217 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110638853 Common bioB biotin synthase CHU_2466 188 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 110639175 Common atoC two-component response regulator CHU_2793 165 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110639542 Common rpoB DNA-directed RNA polymerase subunit beta CHU_3169 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 110638617 Common rlpA rare lipoprotein A-like protein CHU_2221 135 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 110638193 Common pyrC dihydroorotase CHU_1793 212 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 110639870 Common - hypothetical protein CHU_3504 10 None None None 110637685 Common cel possible endoglucanase, glycoside hydrolase family 9 protein CHU_1280 20 None None None 110638905 Common rumA RNA methyltransferase, trmA family; probable 23S rRNA (uracil-5-)-methyltransferase CHU_2518 195 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 110639379 Nonpathogen - hypothetical protein CHU_3005 1 None None None 110639247 Common yidK sodium-solute symporter CHU_2866 62 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 110638148 Common - acyltransferase CHU_1748 43 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 110638819 Nonpathogen - outer membrane protein CHU_2430 2 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 110636927 Common rsaD ABC transporter, ATP-binding protein/permease CHU_0506 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 110638456 Nonpathogen - hypothetical protein CHU_2060 1 None None None 110637993 Common - hypothetical protein CHU_1590 33 COG3124 COG3124, Uncharacterized protein conserved in bacteria Function unknown 110638061 Common nagB glucosamine-6-phosphate deaminase-like protein CHU_1660 86 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 110639171 Nonpathogen - hypothetical protein CHU_2789 1 None None None 110638497 Common dgt deoxyguanosinetriphosphate triphosphohydrolase CHU_2101 159 COG0232 Dgt, dGTP triphosphohydrolase Nucleotide transport and metabolism 110638486 Common - hypothetical protein CHU_2090 3 COG1434 COG1434, Uncharacterized conserved protein Function unknown 110637002 Nonpathogen - hypothetical protein CHU_0582 1 None None None 110638307 Common - hypothetical protein CHU_1908 46 COG5151 SSL1, RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 Transcription / DNA replication, recombination, and repair 110636506 Common cspC cold shock protein CHU_0079 159 COG1278 CspC, Cold shock proteins Transcription 110639855 Common - glycyl-tRNA synthetase CHU_3489 87 COG0423 GRS1, Glycyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 110638362 Common - hypothetical protein CHU_1963 9 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 110638265 Nonpathogen - hypothetical protein CHU_1866 1 None None None 110639747 Nonpathogen - hypothetical protein CHU_3378 1 None None None 110639042 Common - cation or acridine efflux membrane fusion protein CHU_2657 172 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110638779 Nonpathogen - hypothetical protein CHU_2389 1 None None None 110639658 Common - conserved hypothetical protein; possible SAM-dependent methyltransferase CHU_3286 34 None None None 110637427 Nonpathogen - hypothetical protein CHU_1017 4 None None None 110636841 Nonpathogen - hypothetical protein CHU_0418 1 None None None 110637137 Common aroA 3-phosphoshikimate 1-carboxyvinyltransferase CHU_0717 228 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 110638396 Common - hypothetical protein CHU_1997 12 None None None 110637476 Common - conserved hypothetical protein with DNA-binding domain CHU_1066 25 COG1661 COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif General function prediction only 110638414 Common tonB tonB protein CHU_2015 6 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 110637142 Nonpathogen - hypothetical protein CHU_0722 1 None None None 110636876 Common rpmA 50S ribosomal protein L27 CHU_0454 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 110637041 Nonpathogen - hypothetical protein CHU_0621 1 None None None 110637310 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_0896 102 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110637193 Common fucP fucose permease CHU_0773 46 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 110636457 Common gcvH glycine cleavage system protein H CHU_0030 186 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 110639877 Nonpathogen - hypothetical protein CHU_3511 1 None None None 110637816 Common - hypothetical protein CHU_1412 3 COG1832 COG1832, Predicted CoA-binding protein General function prediction only 110639340 Nonpathogen - hypothetical protein; possible sigma 24 related CHU_2965 2 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110639904 Nonpathogen - hypothetical protein CHU_3538 1 None None None 110640174 Common yijE integral membrane protein CHU_3809 66 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 110639349 Nonpathogen - hypothetical protein CHU_2975 1 None None None 110637958 Common uvrD ATP-dependent DNA helicase II CHU_1554 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 110639564 Common - hypothetical protein CHU_3191 2 None None None 110640185 Common pstA phosphate ABC transporter, permease component CHU_3820 223 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 110639330 Nonpathogen - hypothetical protein CHU_2955 7 COG1431 COG1431, Uncharacterized protein containing piwi/argonaute domain Translation, ribosomal structure and biogenesis 110638986 Common - proteasome-type protease CHU_2600 55 COG3484 COG3484, Predicted proteasome-type protease Posttranslational modification, protein turnover, chaperones 110636516 Common - TonB-dependent receptor CHU_0089 33 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110639819 Nonpathogen - hypothetical protein CHU_3452 1 None None None 110640104 Nonpathogen - hypothetical protein CHU_3738 1 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 110639301 Common - hypothetical protein CHU_2926 5 None None None 110639833 Common grx peroxiredoxin CHU_3466 209 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110637583 Common - hypothetical protein CHU_1175 2 None None None 110639765 Common mmgC acyl-CoA dehydrogenase CHU_3396 169 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 110636773 Common - hypothetical protein CHU_0350 4 None None None 110638591 Common - ABC transporter, ATP-binding protein CHU_2195 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 110637444 Common - hypothetical protein CHU_1034 15 None None None 110637461 Common - endoglucanase-related protein CHU_1051 38 COG5276 COG5276, Uncharacterized conserved protein Function unknown 110637123 Common - delta-1-pyrroline-5-carboxylate dehydrogenase CHU_0703 219 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 110638250 Common - hypothetical protein CHU_1850 3 None None None 110636563 Nonpathogen - hypothetical protein CHU_0137 1 None None None 110639384 Common - pirin-related protein CHU_3010 148 COG1741 COG1741, Pirin-related protein General function prediction only 110636537 Common aspS aspartyl-tRNA synthetase CHU_0111 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110637093 Common - possible lipoprotein transmembrane protein CHU_0673 59 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 110637436 Common - hypothetical protein CHU_1026 35 None None None 110637371 Common - CHU large protein; candidate b-glycosidase, glycoside hydrolase family 9 protein CHU_0961 79 COG3291 COG3291, FOG: PKD repeat General function prediction only 110637114 Common ybdL aminotransferase CHU_0694 237 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 110637843 Common - hypothetical protein CHU_1439 23 COG3228 COG3228, Uncharacterized protein conserved in bacteria Function unknown 110638934 Common - hypothetical protein CHU_2548 11 None None None 110637788 Common - conserved hypothetical protein; possible transport protein CHU_1383 219 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 110636833 Nonpathogen - hypothetical protein CHU_0410 1 None None None 110638438 Common - CHU large protein, candidate xylanase, CBM9 module, Glycoside Hydrolase Family 5 protein CHU_2042 36 COG5520 COG5520, O-Glycosyl hydrolase Cell envelope biogenesis, outer membrane 110636653 Common - conserved hypothetical protein; possible biotin synthase related domain containing protein CHU_0228 55 COG4277 COG4277, Predicted DNA-binding protein with the Helix-hairpin-helix motif General function prediction only 110640149 Common bglX candidate b-glucosidase, Glycoside Hydrolase Family 3 protein CHU_3784 119 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 110636671 Common thiE thiamine phosphate pyrophosphorylase CHU_0246 24 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 110636604 Common atpB ATP synthase, subunit A (H(+)-transporting two-sector ATPase) CHU_0179 111 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 110639812 Nonpathogen - hypothetical protein CHU_3445 1 None None None 110638753 Nonpathogen - hypothetical protein CHU_2362 1 None None None 110638919 Common - b-glycosyltransferase-related protein, glycosyltransferase family 2 protein CHU_2532 7 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110637498 Common murI glutamate racemase CHU_1088 190 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 110637026 Common - hypothetical protein CHU_0606 5 None None None 110638528 Common - hypothetical protein CHU_2132 31 COG1714 COG1714, Predicted membrane protein/domain Function unknown 110638688 Nonpathogen - hypothetical protein CHU_2294 4 None None None 110637229 Nonpathogen - hypothetical protein CHU_0809 1 None None None 110638854 Common sppA protease IV; signal peptide peptidase CHU_2467 190 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 110638248 Nonpathogen - hypothetical protein CHU_1848 1 None None None 110637934 Nonpathogen - hypothetical protein CHU_1530 1 None None None 110636711 Common - hypothetical protein CHU_0287 37 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 110638923 Common pyrG CTP synthetase CHU_2536 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 110636595 Common - hypothetical protein CHU_0170 5 None None None 110636465 Common - hypothetical protein CHU_0038 4 None None None 110638345 Nonpathogen - hypothetical protein CHU_1946 1 None None None 110637178 Common - conserved hypothetical protein; possible 4'-phosphopantetheinyl transferase family protein CHU_0758 6 COG2091 Sfp, Phosphopantetheinyl transferase Coenzyme metabolism 110640009 Common dxs 1-deoxy-D-xylulose-5-phosphate synthase CHU_3643 225 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 110636817 Nonpathogen - hypothetical protein CHU_0394 1 None None None 110636696 Common - hypothetical protein CHU_0271 3 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 110638575 Common rsbU sigma factor regulation protein CHU_2179 89 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 110638217 Common - hypothetical protein CHU_1817 54 COG3781 COG3781, Predicted membrane protein Function unknown 110639575 Common - hypothetical protein CHU_3202 2 None None None 110637862 Common - hypothetical protein CHU_1458 12 None None None 110637051 Nonpathogen - hypothetical protein CHU_0631 1 None None None 110638901 Common acrB cation efflux system protein/acriflavin resistance protein B family CHU_2514 152 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110639686 Common amtB ammonium transporter CHU_3314 201 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 110639104 Common ptpA protein-tyrosine-phosphatase (low molecular weight phosphotyrosine protein) CHU_2721 133 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 110638925 Common tpn transposase CHU_2539 9 None None None 110638322 Nonpathogen - hypothetical protein CHU_1923 1 None None None 110639339 Nonpathogen - hypothetical protein CHU_2964 1 None None None 110639108 Common - major facilitator superfamily permease CHU_2725 45 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 110638104 Common relA GTP diphosphokinase (guanosine 3',5'-polyphosphate synthase) CHU_1704 208 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 110637376 Common - hypothetical protein CHU_0966 4 COG2968 COG2968, Uncharacterized conserved protein Function unknown 110637378 Nonpathogen - hypothetical protein CHU_0968 1 None None None 110638011 Common - hypothetical protein CHU_1608 7 None None None 110638157 Common - hypothetical protein CHU_1757 84 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 110640115 Common - hypothetical protein CHU_3749 9 None None None 110637971 Common - hypothetical protein CHU_1567 3 None None None 110639426 Common eutC ethanolamine ammonia-lyase small subunit CHU_3052 53 COG4302 EutC, Ethanolamine ammonia-lyase, small subunit Amino acid transport and metabolism 110636706 Common - hypothetical protein CHU_0282 2 None None None 110639259 Common arcB two-component sensor histidine kinase, sensor for arcA CHU_2879 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110640194 Nonpathogen - hypothetical protein CHU_3829 1 None None None 110637235 Common - hypothetical protein CHU_0815 7 None None None 110637121 Common - hypothetical protein CHU_0701 19 None None None 110637511 Nonpathogen - hypothetical protein CHU_1102 1 None None None 110637517 Nonpathogen - hypothetical protein CHU_1108 1 None None None 110639511 Common rpsK 30S ribosomal protein S11 CHU_3138 247 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 110636976 Common - hypothetical protein CHU_0556 5 None None None 110637216 Nonpathogen - hypothetical protein CHU_0796 1 None None None 110637301 Common - integral membrane protein CHU_0887 2 None None None 110637856 Common - cyclic nucleotide binding regulatory protein CHU_1452 30 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110638890 Nonpathogen - hypothetical protein CHU_2503 1 None None None 110637150 Nonpathogen - hypothetical protein CHU_0730 1 None None None 110637414 Common glpD glycerol-3-phosphate dehydrogenase (aerobic) CHU_1004 147 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 110637762 Common ybbK possible protease CHU_1357 190 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 110638975 Common kdsA 2-dehydro-3-deoxyphosphooctonate aldolase CHU_2589 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 110638123 Common - hypothetical protein CHU_1723 3 None None None 110637420 Nonpathogen - hypothetical protein CHU_1010 2 COG3093 VapI, Plasmid maintenance system antidote protein General function prediction only 110639946 Common - possible biopolymer transport protein CHU_3580 7 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 110637201 Nonpathogen - hypothetical protein CHU_0781 1 COG5662 COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) Transcription 110639049 Common nudC NUDIX hydrolase family protein CHU_2664 37 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 110639503 Common - hypothetical protein CHU_3130 147 COG1741 COG1741, Pirin-related protein General function prediction only 110637922 Common - hydrolase CHU_1518 51 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 110636735 Common - gamma-glutamyl carboxylase-like protein CHU_0311 8 None None None 110637576 Nonpathogen - hypothetical protein CHU_1168 1 None None None 110638765 Nonpathogen - conserved hypothetical protein; possible amidase CHU_2374 1 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 110639269 Common rgpA a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_2889 31 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110637512 Nonpathogen - hypothetical protein CHU_1103 6 COG1714 COG1714, Predicted membrane protein/domain Function unknown 110638943 Common - putative inner membrane protein translocase component YidC CHU_2557 211 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 110637249 Common czcB cation eflux system protein CHU_0830 160 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110638299 Common - response regulator with Che-like receiver domain CHU_1900 148 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 110639775 Common mhpC hydrolase, alpha/beta fold superfamily CHU_3406 89 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110636526 Common - probable peptidase M22, glycoprotease family CHU_0099 181 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 110637272 Nonpathogen - hypothetical protein CHU_0856 1 None None None 110636826 Nonpathogen - hypothetical protein CHU_0403 1 None None None 110640068 Common - hypothetical protein CHU_3702 86 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 110637345 Nonpathogen - hypothetical protein CHU_0933 1 COG4103 COG4103, Uncharacterized protein conserved in bacteria Function unknown 110639282 Common - hypothetical protein CHU_2904 121 COG1690 RtcB, Uncharacterized conserved protein Function unknown 110636912 Common - conserved hypothetical protein with multiple hexapeptide repeat domains CHU_0490 47 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 110638634 Common - hypothetical protein CHU_2238 3 None None None 110636925 Nonpathogen - transcriptional regulator CHU_0504 2 COG1395 COG1395, Predicted transcriptional regulator Transcription 110638842 Common - hypothetical protein CHU_2454 26 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 110636728 Nonpathogen - hypothetical protein CHU_0304 1 None None None 110640063 Common rpoD RNA polymerase sigma factor/ECF subfamily (sigma-70) CHU_3697 167 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110639550 Common rpoN RNA polymerase, sigma-54 factor CHU_3177 145 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 110636531 Common - two-component response regulator CHU_0105 218 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 110639821 Common kinG histidine kinase CHU_3454 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110636443 Common - hypothetical protein CHU_0016 36 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 110638028 Common - hypothetical protein CHU_1626 5 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 110636849 Common - CHU large protein; mannosidase-related protein CHU_0427 64 None None None 110637671 Common yfiK two-component response regulator CHU_1266 217 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 110639353 Common - conserved hypothetical protein, with TPR repeat CHU_2979 78 COG4995 COG4995, Uncharacterized protein conserved in bacteria Function unknown 110638212 Common oahS O-acetylhomoserine sulfhydrylase CHU_1812 98 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 110638292 Common bcp bacterioferritin comigratory protein CHU_1893 226 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110639755 Common - phosphatase CHU_3386 36 COG3211 PhoX, Predicted phosphatase General function prediction only 110640096 Nonpathogen - hypothetical protein CHU_3730 1 None None None 110639735 Nonpathogen - hypothetical protein CHU_3366 1 None None None 110639004 Common hyfH NADH:ubiquinone oxidoreductase chain I CHU_2619 180 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 110639690 Common - possible transposase CHU_3318 39 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 110637058 Common cysQ sulfite synthesis pathway protein CHU_0638 189 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 110640155 Common - hypothetical protein CHU_3790 13 None None None 110637962 Common - outer membrane protein CHU_1558 14 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 110636583 Common uvrA excinuclease ABC, subunit A CHU_0158 242 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 110637784 Common nuoD NADH dehydrogenase I chain D CHU_1379 191 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 110638437 Common - CHU large protein; candidate polyfunctional acetylxylan esterase/b-xylosidase/a-L-arabinofuranosidase, CBM9 module, Glycoside Hydrolase Family 43 protein and Carbohydrate Esterase Family 6 protein CHU_2041 55 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 110639190 Common - cation efflux protein CHU_2809 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 110636610 Nonpathogen - hypothetical protein CHU_0185 1 None None None 110636753 Nonpathogen - hypothetical protein CHU_0330 1 None None None 110637901 Common - conserved hypothetical protein; possible histidine kinase CHU_1497 8 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 110636581 Common - possible sugar nucleotide epimerase CHU_0156 114 COG1090 COG1090, Predicted nucleoside-diphosphate sugar epimerase General function prediction only 110636555 Common - hypothetical protein CHU_0129 2 None None None 110637240 Common nhaA Na+/H+ antiporter CHU_0821 213 COG4651 RosB, Kef-type K+ transport system, predicted NAD-binding component Inorganic ion transport and metabolism 110637526 Nonpathogen - hypothetical protein CHU_1118 1 None None None 110636745 Common ygcC aminodeoxychorismate lyase-like protein CHU_0321 179 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 110636957 Common - multidrug resistance protein; HlyD family secretion protein CHU_0537 150 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110639684 Common - hypothetical protein CHU_3312 102 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 110637164 Common - CHU large protein CHU_0744 53 None None None 110638255 Nonpathogen - hypothetical protein CHU_1856 2 None None None 110640034 Common recJ single-strand DNA specific exonuclease CHU_3668 192 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 110638827 Common pntA pyridine nucleotide transhydrogenase, alpha subunit CHU_2439 167 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 110637387 Common sufC iron-regulated ABC transporter, ATP-binding protein CHU_0977 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 110638513 Common - hypothetical protein CHU_2117 4 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110639583 Common - hypothetical protein CHU_3210 2 None None None 110639074 Common metG methionyl-tRNA synthetase CHU_2689 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110639235 Common - translation initiation factor SUI1 CHU_2854 13 COG0023 SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins Translation, ribosomal structure and biogenesis 110639543 Common rplL 50S ribosomal protein L7/L12 CHU_3170 214 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 110636549 Common ykgE Fe-S oxidoreductase, possible dehydrogenase subunit CHU_0123 119 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 110637835 Common - hypothetical protein CHU_1431 3 None None None 110637869 Common sms possible ATP-dependent serine protease CHU_1465 8 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 110636466 Nonpathogen - hypothetical protein CHU_0039 3 None None None 110640169 Common - hypothetical protein CHU_3804 5 None None None 110637072 Nonpathogen - hypothetical protein CHU_0652 1 None None None 110636617 Common - possible peptidyl-prolyl cis-trans isomerase CHU_0192 154 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 110636943 Common ccpA cytochrome C peroxidase CHU_0523 95 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 110638152 Nonpathogen - hypothetical protein CHU_1752 1 None None None 110638631 Common - endoglucanase-related protein, glycoside hydrolase family 9 protein CHU_2235 13 None None None 110637757 Common - hypothetical protein CHU_1352 10 None None None 110639153 Common - hypothetical protein CHU_2771 15 COG4485 COG4485, Predicted membrane protein Function unknown 110639252 Common - conserved hypothetical protein; possible microcystin dependent CHU_2872 37 COG4675 MdpB, Microcystin-dependent protein Function unknown 110639605 Common ampC probable beta-lactamase CHU_3232 81 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 110638150 Common - hypothetical protein CHU_1750 6 None None None 110637753 Common mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase CHU_1348 211 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 110637567 Nonpathogen - hypothetical protein CHU_1159 2 None None None 110638604 Common - hypothetical protein CHU_2208 20 None None None 110637571 Common - metal-dependent hydrolase CHU_1163 12 None None None 110638876 Nonpathogen - hypothetical protein CHU_2489 1 None None None 110639505 Common - hypothetical protein CHU_3132 4 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 110639846 Common yedO 1-aminocyclopropane-1-carboxylate deaminase CHU_3479 76 COG2515 Acd, 1-aminocyclopropane-1-carboxylate deaminase Amino acid transport and metabolism 110636642 Common ompA outer membrane protein, porin F precursor CHU_0217 153 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110638366 Common msmK ABC-type nitrate transporter, ATP-binding protein CHU_1967 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 110637065 Nonpathogen - hypothetical protein CHU_0645 1 None None None 110637964 Nonpathogen - hypothetical protein CHU_1560 1 None None None 110638530 Nonpathogen - hypothetical protein CHU_2134 5 None None None 110638811 Common prsA phosphoribosylpyrophosphate synthetase CHU_2422 238 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 110638044 Common - conserved hypothetical protein, with TPR repeat CHU_1642 50 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 110638097 Nonpathogen - hypothetical protein CHU_1696 1 None None None 110639399 Common phhA phenylalanine 4-monooxygenase CHU_3025 45 COG3186 COG3186, Phenylalanine-4-hydroxylase Amino acid transport and metabolism 110637104 Common cysM cysteine synthase B CHU_0684 220 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 110637957 Common - hypothetical protein CHU_1553 6 None None None 110640086 Common ribH riboflavin synthase, beta subunit CHU_3720 230 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 110638278 Nonpathogen - hypothetical protein CHU_1879 1 None None None 110637976 Common - ABC transporter, permease CHU_1572 133 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 110638444 Common - conserved hypothetical protein; glycoprotein CHU_2048 29 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 110637625 Common - positive regulator of sigma-B CHU_1219 33 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 110638873 Nonpathogen - hypothetical protein CHU_2486 1 None None None 110638470 Nonpathogen - hypothetical protein CHU_2074 1 None None None 110637915 Common yegM possible membrane-fusion protein CHU_1511 147 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110638696 Common - hypothetical protein CHU_2302 38 None None None 110639456 Common astC acetylornithine delta-aminotransferase CHU_3083 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 110637404 Common maoC dehydrogenase with MaoC-like domain CHU_0994 70 COG2030 MaoC, Acyl dehydratase Lipid metabolism 110636751 Nonpathogen - hypothetical protein CHU_0328 1 None None None 110640211 Common rpmF 50S ribosomal protein L32 CHU_1625a 75 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 110639051 Common - hypothetical protein CHU_2666 5 None None None 110639560 Common - hypothetical protein CHU_3187 13 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 110637696 Nonpathogen - hypothetical protein CHU_1291 1 None None None 110638716 Common tpn transposase CHU_2323 9 None None None 110636494 Common frvX aminopeptidase, M42 family CHU_0067 33 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 110639341 Nonpathogen - hypothetical protein CHU_2966 1 COG3851 UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific Signal transduction mechanisms 110639218 Common - ATP-dependent DNA ligase CHU_2837 100 COG3285 COG3285, Predicted eukaryotic-type DNA primase DNA replication, recombination, and repair 110639131 Common mraW S-adenosyl-methyltransferase MraW CHU_2748 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 110640168 Common dnaJ chaperone protein, dnaJ family CHU_3803 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 110638839 Nonpathogen - hypothetical protein CHU_2451 1 None None None 110639567 Nonpathogen - hypothetical protein CHU_3194 2 None None None 110636799 Nonpathogen - hypothetical protein CHU_0376 1 None None None 110640127 Common oxyR redox-sensitive transcriptional activator OxyR, LysR family CHU_3761 189 COG0583 LysR, Transcriptional regulator Transcription 110639446 Common engA GTP-binding protein EngA CHU_3073 228 COG1160 COG1160, Predicted GTPases General function prediction only 110638054 Common - hypothetical protein CHU_1653 182 COG1496 COG1496, Uncharacterized conserved protein Function unknown 110637794 Common ygcM probable 6-pyruvoyltetrahydropterin synthase (6-pyruvoyl tetrahydrobiopterin) synthase CHU_1390 35 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 110638335 Nonpathogen - hypothetical protein CHU_1936 1 None None None 110638662 Common - hypothetical protein CHU_2266 56 COG2187 COG2187, Uncharacterized protein conserved in bacteria Function unknown 110639059 Common - hypothetical protein CHU_2674 9 None None None 110638092 Common yfeW possible beta-lactamase CHU_1691 90 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 110636649 Nonpathogen - hypothetical protein CHU_0224 5 None None None 110637266 Common rfbB dTDP-glucose 4,6 dehydratase CHU_0850 231 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110638832 Common - hypothetical protein CHU_2444 9 None None None 110639493 Nonpathogen - hypothetical protein CHU_3120 1 None None None 110639221 Nonpathogen - hypothetical protein CHU_2840 1 None None None 110636931 Common hycG NADH:ubiquinone oxidoreductase CHU_0510 192 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 110636481 Common atoC response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS) CHU_0054 14 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110639867 Common - hypothetical protein CHU_3501 79 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 110638942 Common - conserved hypothetical protein with multiple pentapeptide repeats CHU_2556 69 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 110638429 Common trmE tRNA modification GTPase TrmE CHU_2030 229 COG0486 ThdF, Predicted GTPase General function prediction only 110637518 Common smtB transcriptional repressor, ArsR family CHU_1109 84 COG0640 ArsR, Predicted transcriptional regulators Transcription 110638959 Common - hypothetical protein CHU_2573 4 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 110636681 Common - possible TonB-dependent receptor CHU_0256 11 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110638581 Common yiaD possible outer membrane protein CHU_2185 167 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110639704 Nonpathogen - hypothetical protein CHU_3335 1 None None None 110639642 Common - hypothetical protein CHU_3270 6 COG3117 COG3117, Uncharacterized protein conserved in bacteria Function unknown 110637805 Common cel M42 glutamyl aminopeptidase CHU_1401 85 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 110638185 Common rpoD RNA polymerase sigma-70 factor CHU_1785 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 110639066 Common yfdH candidate b-glycosyltransferase, Glycosyltransferase Family 2 protein CHU_2681 186 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110638208 Common pabB p-aminobenzoate synthetase, component I CHU_1808 221 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 110637723 Common - hypothetical protein CHU_1318 12 None None None 110638518 Common - conserved hypothetical protein; possible acyltransferase CHU_2122 53 COG4261 COG4261, Predicted acyltransferase General function prediction only 110639285 Common - conserved hypothetical protein; possible transcriptional regulator CHU_2910 8 COG2378 COG2378, Predicted transcriptional regulator Transcription 110638083 Common gyrA DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A CHU_1682 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 110639794 Common ysh1 metallo-beta-lactamase superfamily protein CHU_3425 133 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 110637118 Nonpathogen - hypothetical protein CHU_0698 1 None None None 110637412 Common trpS tryptophan--tRNA ligase CHU_1002 231 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110637329 Common glnB nitrogen regulatory protein P-II CHU_0915 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 110636797 Common - methyltransferase CHU_0374 71 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 110637046 Nonpathogen - Na(+)/H(+) exchanger family protein CHU_0626 1 COG3263 COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain Inorganic ion transport and metabolism 110637475 Nonpathogen - hypothetical protein CHU_1065 2 None None None 110637528 Nonpathogen - membrane protein CHU_1120 1 None None None 110636552 Common purM phosphoribosylformylglycinamidine cyclo-ligase CHU_0126 188 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 110637209 Nonpathogen - hypothetical protein CHU_0789 1 None None None 110636996 Common pepN membrane alanine aminopeptidase (aminopeptidase N) CHU_0576 163 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 110637146 Common - hypothetical protein CHU_0726 9 None None None 110638859 Common - succinate dehydrogenase cytochrome B subunit CHU_2472 32 None None None 110637614 Common - conserved hypothetical protein; possible metalloprotease CHU_1208 44 COG3227 LasB, Zinc metalloprotease (elastase) Amino acid transport and metabolism 110637488 Common waaM lauroyl/myristoyl acyltransferase CHU_1078 74 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 110638420 Common dps DNA-binding protein; DPS family protein CHU_2021 123 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 110637252 Common galE UDP-galactose-4-epimerase CHU_0833 234 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110636697 Nonpathogen - Fe-S-cluster oxidoreductase CHU_0273 2 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 110636601 Common - candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase, candidate murein polymerase, Glycosyltransferase Family 51 protein CHU_0176 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 110636988 Common tpn transposase CHU_0568 14 None None None 110636816 Nonpathogen - signal transduction histidine kinase CHU_0393 2 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110638537 Common - outer membrane protein CHU_2141 169 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110636669 Common thiH thiamine biosynthesis protein CHU_0244 53 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 110638821 Common - response regulator, CheY-like CHU_2432 93 COG4753 COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Signal transduction mechanisms 110639272 Common - acetyl transferase CHU_2893 167 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 110638323 Common - monooxygenase; possible 2-polyprenyl-6-methoxyphenol hydroxylase CHU_1924 30 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 110636766 Nonpathogen - hypothetical protein CHU_0343 1 None None None 110639364 Common hslU ATP-dependent protease ATP-binding subunit CHU_2990 212 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 110639533 Common rplW 50S ribosomal protein L23 CHU_3160 182 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 110638557 Nonpathogen - hypothetical protein CHU_2161 11 COG2149 COG2149, Predicted membrane protein Function unknown 110639314 Common hsdS probable type I restriction-modification system CHU_2939 71 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 110639101 Common - hypothetical protein CHU_2718 6 None None None 110637214 Common - long-chain acyl-CoA thioester hydrolase CHU_0794 59 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 110636717 Nonpathogen - hypothetical protein CHU_0293 1 None None None 110639157 Common wecB UDP-N-acetyl glucosamine -2-epimerase CHU_2775 153 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 110637748 Common - acyltransferase family protein CHU_1343 59 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 110640070 Common lemA LemA protein CHU_3704 131 COG1704 LemA, Uncharacterized conserved protein Function unknown 110637233 Common - hypothetical protein CHU_0813 3 None None None 110637269 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_0853 187 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110637161 Common lysS lysyl-tRNA synthetase CHU_0741 240 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 110640072 Common prfA peptide chain release factor 1 CHU_3706 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 110638004 Nonpathogen - hypothetical protein CHU_1601 2 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 110639951 Nonpathogen - hypothetical protein CHU_3585 1 None None None 110639672 Common - hypothetical protein CHU_3300 10 None None None 110637611 Nonpathogen - hypothetical protein CHU_1203 1 None None None 110636463 Common coiA competence protein; transcription factor CHU_0036 7 COG4469 CoiA, Competence protein General function prediction only 110639406 Common - zinc protease CHU_3032 162 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 110637935 Common efp elongation factor P (EF-P) CHU_1531 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 110637973 Common folA dihydrofolate reductase type I; trimethoprim resistance CHU_1569 146 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 110640051 Common ssb single-stranded DNA binding protein CHU_3685 212 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 110639236 Common ppc phosphoenolpyruvate carboxylase CHU_2855 117 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 110637086 Common - conserved hypothetical protein (possibly iron-regulated) CHU_0666 36 COG3487 IrpA, Uncharacterized iron-regulated protein Inorganic ion transport and metabolism 110638731 Common - hypothetical protein CHU_2340 39 COG3735 COG3735, Uncharacterized protein conserved in bacteria Function unknown 110639757 Common phhB pterin-4a-carbinolamine dehydratase CHU_3388 82 COG2154 COG2154, Pterin-4a-carbinolamine dehydratase Coenzyme metabolism 110639123 Common ftsW cell division protein CHU_2740 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 110639382 Common dnaA chromosomal replication initiator protein CHU_3008 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 110637735 Common moaC bifunctional molybdenum cofactor biosynthesis protein C/molybdopterin-binding protein CHU_1330 197 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 110638704 Common arcB sensor histidine kinase/GAF domain hybrid protein CHU_2310 220 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110639851 Common iscS cysteine desulfurase CHU_3485 238 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 110638038 Nonpathogen - hypothetical protein CHU_1636 2 COG5661 COG5661, Predicted secreted Zn-dependent protease Posttranslational modification, protein turnover, chaperones 110637071 Common ftsY signal recognition particle GTPase CHU_0651 246 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 110637996 Nonpathogen - hypothetical protein CHU_1593 1 None None None 110637764 Common fixA electron transfer flavoprotein, beta subunit CHU_1359 151 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 110637067 Common hemL ornithine aminotransferase (glutamate-1-semialdehyde 2,1-aminomutase) CHU_0647 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 110638191 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_1791 180 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110637630 Common - hypothetical protein CHU_1224 11 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 110638914 Common pdhC dihydrolipoamide acetyltransferase CHU_2527 197 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 110636859 Common - hypothetical protein CHU_0437 2 COG4727 COG4727, Uncharacterized protein conserved in bacteria Function unknown 110636790 Common - possible permease CHU_0367 122 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 110639693 Common - hypothetical protein CHU_3321 27 COG3228 COG3228, Uncharacterized protein conserved in bacteria Function unknown 110637171 Common - ABC transporter-related permease with MCE domain CHU_0751 48 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 110637945 Nonpathogen - hypothetical protein CHU_1541 3 None None None 110638691 Common - hypothetical protein CHU_2297 6 None None None 110640134 Nonpathogen - hypothetical protein CHU_3768 1 None None None 110638026 Common - 3-oxoacyl-(acyl carrier protein) synthase III CHU_1624 216 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 110638462 Common - hypothetical protein CHU_2066 38 COG3685 COG3685, Uncharacterized protein conserved in bacteria Function unknown 110637536 Common - hypothetical protein CHU_1128 3 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 110638371 Nonpathogen - hypothetical protein CHU_1972 1 None None None 110636488 Nonpathogen - glycosyltransferase CHU_0061 10 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110636596 Common gldK gliding motility-related protein CHU_0171 90 COG1262 COG1262, Uncharacterized conserved protein Function unknown 110636834 Nonpathogen - hypothetical protein CHU_0411 1 None None None 110637549 Common - probable ferredoxin CHU_1141 86 COG0348 NapH, Polyferredoxin Energy production and conversion 110639407 Common - serine protease CHU_3033 48 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 110639860 Common gldJ possible gliding motility-related protein; possible serine kinase CHU_3494 60 COG1262 COG1262, Uncharacterized conserved protein Function unknown 110640188 Nonpathogen - hypothetical protein CHU_3823 1 None None None 110636689 Common - hypothetical protein CHU_0264 38 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 110638720 Common - hypothetical protein CHU_2328 5 None None None 110639595 Common - hypothetical protein CHU_3222 67 COG1624 COG1624, Uncharacterized conserved protein Function unknown 110639573 Nonpathogen - hypothetical protein CHU_3200 1 None None None 110637276 Common - b-glycosyltransferase, glycosyltransferase family 2 protein CHU_0860 188 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110637665 Common ureA bifunctional urease subunit gamma/beta CHU_1260 96 COG0832 UreB, Urea amidohydrolase (urease) beta subunit Amino acid transport and metabolism 110638789 Common - hypothetical protein CHU_2400 35 COG3832 COG3832, Uncharacterized conserved protein Function unknown 110638659 Nonpathogen - hypothetical protein CHU_2263 1 None None None 110640120 Common - transcriptional regulator, AraC family CHU_3754 120 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110639454 Common argC N-acetyl-gamma-glutamyl-phosphate reductase CHU_3081 214 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 110637584 Common - hypothetical protein CHU_1176 2 None None None 110636782 Common - metal-dependent membrane protease CHU_0359 42 COG1266 COG1266, Predicted metal-dependent membrane protease General function prediction only 110639588 Common - 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase CHU_3215 50 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 110637656 Common - CHU large protein; uncharacterized CHU_1251 7 None None None 110637293 Common wza polysaccharide export outer membrane protein CHU_0879 49 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 110639161 Common - hypothetical protein CHU_2779 51 None None None 110639041 Common - conserved hypothetical protein, with SET domain CHU_2656 5 None None None 110637092 Common - hypothetical protein CHU_0672 94 COG0431 COG0431, Predicted flavoprotein General function prediction only 110639331 Common - hypothetical protein CHU_2956 6 None None None 110640171 Nonpathogen - hypothetical protein CHU_3806 1 None None None 110637035 Common lpxH UDP-2,3-diacylglucosamine hydrolase CHU_0615 81 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 110637633 Common - hypothetical protein CHU_1227 5 None None None 110636775 Nonpathogen - hypothetical protein CHU_0352 1 None None None 110637714 Common - TPR repeat-containing protein CHU_1309 138 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 110640095 Common nadC nicotinate-nucleotide pyrophosphorylase CHU_3729 205 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 110637176 Common smt SAM-dependent methyltransferase CHU_0756 27 None None None 110639461 Common argH argininosuccinate lyase CHU_3088 224 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 110639734 Nonpathogen - hypothetical protein CHU_3365 1 COG3047 OmpW, Outer membrane protein W Cell envelope biogenesis, outer membrane 110639927 Common pgl gluconolactonase precursor CHU_3561 59 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 110638735 Nonpathogen - hypothetical protein CHU_2344 1 None None None 110637456 Common - hypothetical protein CHU_1046 4 COG2127 COG2127, Uncharacterized conserved protein Function unknown 110638618 Common - hypothetical protein CHU_2222 89 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 110638418 Common paaH 3-hydroxybutyryl-CoA dehydrogenase CHU_2019 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 110637099 Nonpathogen - hypothetical protein CHU_0679 1 None None None 110637186 Nonpathogen - hypothetical protein CHU_0766 1 None None None 110639433 Nonpathogen - hypothetical protein CHU_3059 1 None None None 110639135 Common ugpQ glycerophosphodiester phosphodiesterase, cytosolic CHU_2752 71 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 110639298 Nonpathogen - hypothetical protein CHU_2923 1 None None None 110639523 Common rplE 50S ribosomal protein L5 CHU_3150 248 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 110638072 Common - hypothetical protein CHU_1671 4 None None None 110639973 Common asnB asparagine synthase, glutamine-hydrolyzing CHU_3607 145 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 110637428 Common - hypothetical protein CHU_1018 2 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 110638411 Common - TPR repeat-containing protein CHU_2012 64 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 110639048 Common - hypothetical protein CHU_2663 9 None None None 110636636 Common atoS sensor histidine kinase CHU_0211 218 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110639242 Common - outer membrane protein CHU_2861 110 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110638318 Common ybjG membrane-associated phospholipid phosphatase CHU_1919 13 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 110637621 Common evgS possible sensor for regulator EvgA CHU_1215 221 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110638170 Common ybhF ABC transporter, ATP-binding protein CHU_1770 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 110638902 Common - outer membrane protein CHU_2515 78 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110638283 Nonpathogen - hypothetical protein CHU_1884 1 None None None 110636661 Common tpn transposase CHU_0236 8 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 110639120 Common - cell division protein CHU_2737 7 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 110638404 Common apt adenine phosphoribosyltransferase CHU_2005 173 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 110639920 Nonpathogen - hypothetical protein CHU_3554 2 None None None 110640001 Common modF possible ABC-type molybdenum transporter, ATP-binding protein CHU_3635 249 COG1119 ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA Inorganic ion transport and metabolism 110637009 Common - transcriptional regulatory protein, AraC type CHU_0589 107 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110640018 Common - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) CHU_3652 148 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 110638442 Common - RNA polymerase specialized sigma subunit CHU_2046 10 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110638985 Nonpathogen - hypothetical protein CHU_2599 1 None None None 110639898 Nonpathogen - hypothetical protein CHU_3532 1 None None None 110639634 Nonpathogen - hypothetical protein CHU_3262 1 None None None 110638251 Common rpsT 30S ribosomal protein S20 CHU_1851 8 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 110638885 Nonpathogen - hypothetical protein CHU_2498 1 None None None 110637984 Common glgA candidate glycogen synthase, Glycosyltransferase Family 3 protein CHU_1581 10 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110639026 Nonpathogen - hypothetical protein CHU_2641 1 None None None 110639808 Common - CHU large protein; b-glycosidase related, glycoside hydrolase family 8 protein CHU_3441 19 COG3405 CelA, Endoglucanase Y Carbohydrate transport and metabolism 110637166 Nonpathogen - hypothetical protein CHU_0746 2 None None None 110637641 Common - phytochrome-like protein CHU_1235 34 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110636981 Common soxC sulfite dehydrogenase CHU_0561 88 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 110639806 Common - CHU large protein; possible glycerol kinase-related CHU_3439 26 None None None 110636608 Common atpA F0F1 ATP synthase subunit alpha CHU_0183 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 110639095 Nonpathogen - hypothetical protein CHU_2712 1 None None None 110638954 Common - hypothetical protein CHU_2568 19 None None None 110637824 Common - hypothetical protein CHU_1420 41 COG3607 COG3607, Predicted lactoylglutathione lyase General function prediction only 110639476 Common - hypothetical protein CHU_3103 12 None None None 110636850 Common yhbW oxidoreductase (possible Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase) CHU_0428 86 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 110638556 Common - major facilitator superfamily permease CHU_2160 96 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 110637288 Nonpathogen - hypothetical protein CHU_0872 1 None None None 110639937 Common amtB ammonium transporter CHU_3571 201 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 110640036 Common - auxin-regulated protein CHU_3670 13 None None None 110638175 Common pdxH pyridoxamine-phosphate oxidase CHU_1775 133 COG0259 PdxH, Pyridoxamine-phosphate oxidase Coenzyme metabolism 110639467 Common - hypothetical protein CHU_3094 62 COG3220 COG3220, Uncharacterized protein conserved in bacteria Function unknown 110637707 Common pabC aminodeoxychorismate lyase (4-amino-4-deoxychorismate lyase) CHU_1302 154 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 110639114 Common - twp-component sensor histidine kinase CHU_2731 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110638899 Common cnhA carbon-nitrogen hydrolase CHU_2512 204 COG0388 COG0388, Predicted amidohydrolase General function prediction only 110639484 Common - hypothetical protein CHU_3111 4 None None None 110639618 Common ccmC possible ABC transport permease, cytochrome c biogenesis CHU_3245 132 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 110637878 Nonpathogen - hypothetical protein CHU_1474 1 None None None 110638485 Nonpathogen - hypothetical protein CHU_2089 1 None None None 110637870 Common dpnA helicase, SNF2 family CHU_1466 36 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 110640047 Nonpathogen - hypothetical protein CHU_3681 1 None None None 110637181 Common folQ dihydroneopterin aldolase CHU_0761 62 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 110638267 Nonpathogen - hypothetical protein CHU_1868 3 None None None 110638795 Common yedA permease, DMT family CHU_2406 56 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 110639037 Common - hypothetical protein CHU_2652 2 None None None 110637599 Common - hypothetical protein CHU_1191 2 None None None 110639303 Common - hypothetical protein CHU_2928 15 None None None 110636977 Common - hypothetical protein CHU_0557 4 None None None 110638413 Nonpathogen - hypothetical protein CHU_2014 1 None None None 110639987 Common ydfG short-chain dehydrogenase CHU_3621 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110636708 Nonpathogen - hypothetical protein CHU_0284 1 None None None 110636909 Nonpathogen - hypothetical protein CHU_0487 2 None None None 110636969 Common - hypothetical protein CHU_0549 4 None None None 110636964 Nonpathogen - hypothetical protein CHU_0544 1 None None None 110638351 Nonpathogen - hypothetical protein CHU_1952 1 None None None 110636920 Nonpathogen - hypothetical protein CHU_0498 1 None None None 110637362 Nonpathogen - hypothetical protein CHU_0952 2 COG5662 COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) Transcription 110640197 Common rfaE ADP-heptose synthase CHU_3832 149 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 110637673 Nonpathogen - hypothetical protein CHU_1268 1 None None None 110640153 Nonpathogen - hypothetical protein CHU_3788 1 None None None 110639086 Common xerD site-specific recombinase CHU_2702 230 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 110637867 Common xis excisionase CHU_1463 7 None None None 110637393 Nonpathogen - hypothetical protein CHU_0983 1 None None None 110639838 Nonpathogen - hypothetical protein CHU_3471 1 None None None 110636670 Common thiF thiamine biosynthesis protein (HesA/MoeB/ThiF family protein) CHU_0245 224 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 110639002 Common nuoK NADH:ubiquinone oxidoreductase chain K CHU_2617 164 COG0713 NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) Energy production and conversion 110639278 Nonpathogen - hypothetical protein CHU_2899 1 None None None 110637929 Common - CHU large protein; possible Rhs family-related protein and SAP-related protein CHU_1525 102 COG4447 COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor General function prediction only 110637343 Common ribA bifunctional protein: GTP cyclohydrolase II; 3,4 dihydroxy-2-butanone-4-phosphate synthase CHU_0931 230 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 110637381 Nonpathogen - hypothetical protein CHU_0971 1 None None None 110636944 Nonpathogen - hypothetical protein CHU_0524 1 COG3350 COG3350, Uncharacterized conserved protein Function unknown 110637155 Common - conserved hypothetical protein; possible flavoprotein CHU_0735 122 COG0431 COG0431, Predicted flavoprotein General function prediction only 110637783 Common nuoE NADH dehydrogenase I chain E CHU_1378 156 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 110640208 Common rmlC dTDP-4-dehydrorhamnose 3,5-epimerase CHU_3843 167 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 110637851 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B CHU_1447 213 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 110636440 Common nagA b-glycosidase, glycoside hydrolase family 3 protein CHU_0013 198 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 110638297 Nonpathogen - hypothetical protein CHU_1898 1 None None None 110637338 Common mrp Mrp/Nbp35 family ATP-binding protein CHU_0926 231 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 110639597 Common - hypothetical protein CHU_3224 6 None None None 110636820 Common - cyclic nucleotide binding regulatory protein CHU_0397 23 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110638866 Nonpathogen - hypothetical protein CHU_2479 1 None None None 110637373 Common - SAM-dependent methyltransferase CHU_0963 11 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 110636857 Nonpathogen - hypothetical protein CHU_0435 1 None None None 110637775 Common nuoM NADH dehydrogenase I chain M CHU_1370 209 COG1008 NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) Energy production and conversion 110638300 Common arcB two-component sensor histidine kinase CHU_1901 220 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 110639717 Common mrr restriction endonuclease CHU_3348 43 COG1715 Mrr, Restriction endonuclease Defense mechanisms 110638498 Nonpathogen - hypothetical protein CHU_2102 1 None None None 110639667 Common smt SAM-dependent methyltransferase CHU_3295 15 None None None 110640061 Common nth endonuclease III CHU_3695 240 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 110638776 Nonpathogen - hypothetical protein CHU_2386 1 None None None 110638139 Nonpathogen - hypothetical protein CHU_1739 1 None None None 110639321 Nonpathogen - hypothetical protein CHU_2946 1 None None None 110638605 Common - hypothetical protein CHU_2209 21 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 110639440 Nonpathogen - hypothetical protein CHU_3066 1 None None None 110637759 Common - metallo-beta-lactamase superfamily protein CHU_1354 210 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 110637833 Common tolB tol biopolymer transport system, periplasmic protein CHU_1429 139 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 110640162 Common araC transcriptional regulator for ara operon CHU_3797 57 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110637832 Common - hypothetical protein CHU_1428 11 None None None 110639230 Common - hypothetical protein CHU_2849 11 None None None 110639578 Nonpathogen - hypothetical protein CHU_3205 1 None None None 110639865 Common - hypothetical protein CHU_3499 4 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 110637882 Nonpathogen - hypothetical protein CHU_1478 1 None None None 110639905 Common - hypothetical protein CHU_3539 3 None None None 110638921 Nonpathogen - hypothetical protein CHU_2534 1 None None None 110638220 Common yeeF amino acid transport protein CHU_1820 168 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 110638800 Common galE UDP-glucose 4-epimerase (UDP-galactose-4-epimerase) CHU_2411 233 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 110637574 Nonpathogen - hypothetical protein CHU_1166 1 None None None 110636588 Common pepN aminopeptidase N CHU_0163 60 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 110639033 Common mutS DNA-mismatch repair protein CHU_2648 205 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 110639424 Nonpathogen ubiE ubiquinone/menaquinone biosynthesis methylase CHU_3050 3 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 110637678 Common hisF imidazole glycerol phosphate synthase, subunit B CHU_1273 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 110639688 Common - exodeoxyribonuclease VII, small subunit CHU_3316 4 None None None 110638430 Nonpathogen - hypothetical protein CHU_2031 1 None None None 110637860 Common - CHU large protein; uncharacterized CHU_1456 8 None None None 110640137 Nonpathogen - hypothetical protein CHU_3771 8 COG0392 COG0392, Predicted integral membrane protein Function unknown 110637687 Common - hypothetical protein CHU_1282 142 COG2081 COG2081, Predicted flavoproteins General function prediction only 110638577 Nonpathogen - hypothetical protein CHU_2181 1 None None None 110636521 Common dnaE DNA polymerase III, alpha subunit CHU_0094 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 110639909 Nonpathogen - hypothetical protein CHU_3543 1 None None None 110637554 Common acrB acriflavine resistance protein CHU_1146 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 110638232 Common - outer membrane assembly protein CHU_1832 8 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 110638627 Common - 2-hydroxyacid dehydrogenase CHU_2231 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 110638807 Common - translation factor, SUA5-family CHU_2418 241 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 110636677 Common ycfQ possible transcriptional regulator CHU_0252 84 COG1309 AcrR, Transcriptional regulator Transcription 110640110 Common leuB 3-isopropylmalate dehydrogenase CHU_3744 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 110639186 Common - hydrolase, alpha/beta superfamily CHU_2805 3 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110639253 Common - hypothetical protein CHU_2873 10 None None None 110638056 Common cel endoglucanase, glycoside hydrolase family 9 protein CHU_1655 20 None None None 110638997 Nonpathogen - membrane protein, with TPR repeat CHU_2611 6 COG2339 COG2339, Predicted membrane protein Function unknown 110637467 Common fabG short chain dehydrogenase; possible 3-oxoacyl-[acyl-carrier-protein] reductase CHU_1057 231 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 110636638 Nonpathogen - hypothetical protein CHU_0213 1 None None None 110638946 Common soj regulator protein; cell division inhibitor CHU_2560 228 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 110638541 Common yegD probable heat shock protein CHU_2145 185 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 110636663 Nonpathogen - hypothetical protein CHU_0238 1 None None None 110638305 Common - CHU large protein, possible SAP or adhesin AidA-related CHU_1906 68 None None None 110637937 Nonpathogen - hypothetical protein CHU_1533 1 None None None 110639956 Common fadA acetyl-CoA acetyltransferase CHU_3590 186 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 110638167 Common - conserved hypothetical protein; probable ATPase CHU_1767 50 COG2102 COG2102, Predicted ATPases of PP-loop superfamily General function prediction only 110636740 Common ppx exopolyphosphatase CHU_0316 181 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 110639249 Common - hypothetical protein CHU_2868 7 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 110637388 Common sufB cysteine desulfurase activator complex subunit SufB CHU_0978 183 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 110640105 Common yifB magnesium chelatase, subunit ChlI CHU_3739 30 COG1239 ChlI, Mg-chelatase subunit ChlI Coenzyme metabolism 110636624 Common - hypothetical protein CHU_0199 8 None None None 110636946 Common - conserved hypothetical protein; possible carbonic anhydrase CHU_0526 147 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 110638013 Nonpathogen - hypothetical protein CHU_1610 1 None None None 110637207 Nonpathogen - conserved hypothetical protein; possible heat shock protein CHU_0787 3 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 110638763 Nonpathogen - hypothetical protein CHU_2372 1 None None None 110639660 Nonpathogen - hypothetical protein CHU_3288 1 None None None 110639370 Common dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase CHU_2996 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 110638426 Common troC Mn2+/Zn2+ ABC transporter, permease CHU_2027 190 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 110638504 Common - conserved hypothetical protein; possible exporter CHU_2108 30 COG4258 COG4258, Predicted exporter General function prediction only 110638892 Nonpathogen - hypothetical protein CHU_2505 1 None None None 110636725 Common gapN gyceraldehyde-3-phosphate dehydrogenase (NADP+) CHU_0301 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 110639513 Common infA translation initiation factor IF-1 CHU_3140 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 110636459 Common iap aminopeptidase CHU_0032 61 COG2234 Iap, Predicted aminopeptidases General function prediction only 110637303 Common - a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0889 23 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110639144 Common kdsB CMP-N-acetylneuraminic acid synthetase CHU_2761 73 COG1083 NeuA, CMP-N-acetylneuraminic acid synthetase Cell envelope biogenesis, outer membrane 110637514 Common - hypothetical protein CHU_1105 4 None None None 110637398 Nonpathogen - hypothetical protein CHU_0988 1 None None None 110636594 Common hemD uroporphyrinogen-III synthase CHU_0169 20 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 110638671 Common ispB octaprenyl-diphosphate synthase CHU_2276 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 110636568 Common - hypothetical protein CHU_0142 157 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 110636450 Common yibP possible membrane protein; possible peptidase, M23/M37 family CHU_0023 91 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 110638840 Common - acetyltransferase CHU_2452 44 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 110638402 Common - permease CHU_2003 68 COG2270 COG2270, Permeases of the major facilitator superfamily General function prediction only 110638479 Nonpathogen - hypothetical protein CHU_2083 1 None None None 110637581 Nonpathogen - hypothetical protein CHU_1173 1 None None None 110637322 Common - zinc protease CHU_0908 36 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 110638271 Nonpathogen - hypothetical protein CHU_1872 2 COG2105 COG2105, Uncharacterized conserved protein Function unknown 110639622 Nonpathogen - hypothetical protein CHU_3250 1 None None None 110639792 Common chrA chromate transporter, permease component CHU_3423 102 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 110638290 Common ycgM 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, fumarylacetoacetate hydrolase family CHU_1891 179 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 110637190 Nonpathogen - hypothetical protein CHU_0770 2 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 110638377 Common flu probable N-acetylglucosamine-1-phosphate uridyltransferase CHU_1978 6 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 110638459 Common ucpA short-chain dehydrogenase CHU_2063 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110639737 Common - transposase CHU_3368 12 None None None 110639569 Common gspE type II general secretion pathway (GSP) E protein CHU_3196 164 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 110637995 Common smc chromosome segregation protein, Smc family protein CHU_1592 211 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 110638749 Common map methionine aminopeptidase CHU_2358 249 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 110639228 Nonpathogen - hypothetical protein CHU_2847 1 None None None 110638642 Common - hypothetical protein CHU_2246 20 COG0753 KatE, Catalase Inorganic ion transport and metabolism 110639787 Common cysS cysteinyl-tRNA synthetase CHU_3418 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110638937 Nonpathogen - hypothetical protein CHU_2551 1 None None None 110637743 Common - protease, U32 family CHU_1338 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 110637496 Common adhD dihydrolipoyl dehydrogenase (dihydrolipoamide dehydrogenase) CHU_1086 246 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 110638262 Common - hypothetical protein CHU_1863 70 COG0429 COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 110637654 Common - probable esterase/lipase CHU_1249 134 COG0657 Aes, Esterase/lipase Lipid metabolism 110639342 Nonpathogen - hypothetical protein CHU_2967 1 None None None 110637898 Common radC DNA repair protein CHU_1494 176 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 110639556 Common dxs 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion CHU_3183 213 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 110637648 Common ipyR inorganic pyrophosphatase (PPase) CHU_1243 185 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 110637903 Common copA cation-transporting ATPase; possible copper-exporting ATPase CHU_1499 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 110637128 Common - transcriptional regulator with DNA-binding domain and aminotransferase domains CHU_0708 234 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 110637113 Common def peptide deformylase CHU_0693 211 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 110638570 Common ycdQ polysaccharide-forming b-glycosyltransferase-related protein, glycosyltransferase family 2 protein CHU_2174 100 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 110638908 Common thiL thiamine-phosphate kinase (thiamin-monophosphate kinase) CHU_2521 190 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 110638917 Nonpathogen - hypothetical protein CHU_2530 1 None None None 110639404 Common mltD peptidoglycan lytic transglycosylase-related proein, glycoside hydrolase family 23 protein CHU_3030 98 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 110639535 Common rplC 50S ribosomal protein L3 CHU_3162 216 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 110637311 Common - acyltransferase family protein CHU_0897 52 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 110637242 Common - hypothetical protein CHU_0823 3 None None None 110637111 Common - hypothetical protein CHU_0691 14 COG2846 COG2846, Regulator of cell morphogenesis and NO signaling Cell division and chromosome partitioning 110637814 Common - hypothetical protein CHU_1410 39 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 110639811 Nonpathogen - hypothetical protein CHU_3444 1 None None None 110636525 Common prc C-terminal processing peptidase, tail-specific protease CHU_0098 181 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 110637603 Common rpoE RNA polymerase sigma-24 factor CHU_1195 169 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110638755 Nonpathogen - hypothetical protein CHU_2364 1 None None None 110639545 Common rplA 50S ribosomal protein L1 CHU_3172 223 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 110636959 Common cusC outer membrane lipoprotein CHU_0539 108 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110637318 Common - acyltransferase family protein CHU_0904 94 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 110638370 Common crp transcriptional regulator CHU_1971 161 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110636846 Nonpathogen - hypothetical protein CHU_0423 1 None None None 110636514 Common ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase CHU_0087 187 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 110638341 Common - cyclic nucleotide binding regulatory protein CHU_1942 27 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110639418 Common - hypothetical protein CHU_3044 14 None None None 110639714 Common - protease, S41 family CHU_3345 15 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 110638063 Common crcB integral membrane protein possibly involved in chromosome condensation, CrcB-like protein CHU_1662 146 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 110636900 Nonpathogen - hypothetical protein CHU_0478 1 None None None 110638852 Nonpathogen - hypothetical protein CHU_2465 1 None None None 110639980 Common radA DNA repair protein RadA CHU_3614 207 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 110638452 Nonpathogen - hypothetical protein CHU_2056 1 None None None 110638598 Common cox3 cytochrome c oxidase, subunit III CHU_2202 159 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 110638816 Nonpathogen - hypothetical protein CHU_2427 1 None None None 110637024 Common wcaL a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0604 150 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110638596 Common - hypothetical protein CHU_2200 56 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 110636710 Nonpathogen - hypothetical protein CHU_0286 1 None None None 110640023 Common polA DNA polymerase I CHU_3657 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 110639177 Nonpathogen - hypothetical protein CHU_2795 1 None None None 110640117 Nonpathogen - hypothetical protein CHU_3751 4 COG3204 COG3204, Uncharacterized protein conserved in bacteria Function unknown 110639159 Common rfbX possible O-antigen transporter CHU_2777 11 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 110639203 Common fixC flavoprotein/dehydrogenase CHU_2822 104 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 110636693 Nonpathogen - hypothetical protein CHU_0268 1 None None None 110637521 Common ptpA protein-tyrosine-phosphatase CHU_1113 20 COG4551 COG4551, Predicted protein tyrosine phosphatase General function prediction only 110636929 Nonpathogen - hypothetical protein CHU_0508 1 None None None 110636875 Common rplU 50S ribosomal protein L21 CHU_0453 184 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 110636651 Common - cyclic nucleotide binding regulatory protein CHU_0226 25 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110639848 Common - conserved hypothetical protein; possible permease CHU_3481 109 COG2962 RarD, Predicted permeases General function prediction only 110637141 Common - hypothetical protein CHU_0721 13 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 110637445 Common - ABC transporter, ATP-binding protein CHU_1035 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 110637007 Common chuA hemin uptake system outer membrane receptor CHU_0587 84 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 110637228 Nonpathogen - hypothetical protein CHU_0808 1 None None None 110639152 Nonpathogen - hypothetical protein CHU_2770 1 None None None 110636758 Nonpathogen - hypothetical protein CHU_0335 1 None None None 110637000 Nonpathogen - hypothetical protein CHU_0580 1 None None None 110637102 Nonpathogen - hypothetical protein CHU_0682 2 None None None 110637429 Common ykgF possible ferrodoxin CHU_1019 96 COG1139 COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain Energy production and conversion 110638849 Common - hypothetical protein CHU_2462 4 None None None 110637450 Common - two-component response regulator CHU_1040 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 110637015 Common ompA outer membrane protein A CHU_0595 143 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110639656 Common - hypothetical protein CHU_3284 12 None None None 110639762 Common rfbB dTDP-glucose 4,6-dehydratase, NAD-dependent epimerase/dehydratase-related protein CHU_3393 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 110636561 Common tolA membrane spanning protein, required for outer membrane integrity CHU_0135 5 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 110639264 Common wcaL a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_2884 161 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110638237 Nonpathogen - hypothetical protein CHU_1837 1 None None None 110638653 Common - cyclic nucleotide binding regulatory protein CHU_2257 26 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110639881 Nonpathogen - hypothetical protein CHU_3515 1 None None None 110640148 Common - hypothetical protein CHU_3783 10 COG3832 COG3832, Uncharacterized conserved protein Function unknown 110637955 Common - hypothetical protein CHU_1551 3 None None None 110636828 Common - hypothetical protein CHU_0405 34 COG1408 COG1408, Predicted phosphohydrolases General function prediction only 110639722 Common - conserved hypothetical protein, possible virulence protein CHU_3353 58 COG3943 COG3943, Virulence protein General function prediction only 110636815 Common - hypothetical protein CHU_0392 2 None None None 110638225 Common secG preprotein translocase subunit SecG CHU_1825 3 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 110639742 Common gltX glutamyl-tRNA synthetase CHU_3373 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 110637148 Nonpathogen - hypothetical protein CHU_0728 1 None None None 110637920 Common - arsenite efflux transporter CHU_1516 134 COG0798 ACR3, Arsenite efflux pump ACR3 and related permeases Inorganic ion transport and metabolism 110638568 Common - amidase CHU_2172 5 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 110638125 Common - hypothetical protein CHU_1725 4 None None None 110637029 Nonpathogen - hypothetical protein CHU_0609 1 None None None 110637136 Nonpathogen - hypothetical protein CHU_0716 1 None None None 110639311 Common hsdR restriction enzyme type I helicase subunit; type I restriction enzyme HsdR CHU_2936 131 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 110639562 Common lipA lipoyl synthase CHU_3189 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 110639745 Common - hypothetical protein CHU_3376 2 None None None 110639011 Common rplY 50S ribosomal protein L25/general stress protein Ctc CHU_2626 169 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 110637231 Nonpathogen - hypothetical protein CHU_0811 1 None None None 110636894 Common pgi glucose-6-phosphate isomerase CHU_0472 187 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 110638006 Nonpathogen - hypothetical protein CHU_1603 1 None None None 110639953 Nonpathogen - hypothetical protein CHU_3587 1 None None None 110639416 Common - two-component response regulator CHU_3042 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 110639943 Common bglX b-glucosidase, glycoside hydrolase family 3 protein CHU_3577 143 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 110639646 Common - hypothetical protein CHU_3274 170 COG0344 COG0344, Predicted membrane protein Function unknown 110638422 Nonpathogen - glycosyltransferase CHU_2023 5 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110637418 Nonpathogen - hypothetical protein CHU_1008 1 None None None 110639644 Common - pantothenate kinase CHU_3272 119 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 110637803 Common - hypothetical protein CHU_1399 3 None None None 110636505 Nonpathogen - hypothetical protein CHU_0078 2 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 110639911 Common glnG response regulator for gln (sensor glnL) (nitrogen regulator I, NRI) CHU_3545 115 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 110636476 Nonpathogen - hypothetical protein CHU_0049 2 None None None 110636564 Common - hypothetical protein CHU_0138 137 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 110638337 Common - hypothetical protein CHU_1938 6 COG4430 COG4430, Uncharacterized protein conserved in bacteria Function unknown 110639871 Common - hypothetical protein CHU_3505 8 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 110638052 Nonpathogen - hypothetical protein CHU_1650 2 None None None 110637090 Common - putative SAM-dependent methyltransferase CHU_0670 30 COG3129 COG3129, Predicted SAM-dependent methyltransferase General function prediction only 110637044 Nonpathogen - hypothetical protein CHU_0624 1 None None None 110637500 Common - cyclic nucleotide binding regulatory protein CHU_1090 13 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110638966 Common - conserved hypothetical protein (possible integral membrane protein) CHU_2580 16 COG4330 COG4330, Predicted membrane protein Function unknown 110639016 Nonpathogen - hypothetical protein CHU_2631 2 COG0398 COG0398, Uncharacterized conserved protein Function unknown 110637503 Nonpathogen - hypothetical protein CHU_1093 1 None None None 110638015 Common - hypothetical protein CHU_1612 21 None None None 110638837 Nonpathogen - hypothetical protein CHU_2449 1 None None None 110639994 Common - lipoprotein ABC transporter, permease CHU_3628 154 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 110638326 Common - bacterial sugar transferase CHU_1927 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 110639958 Common - transcriptional regulator, MarR family CHU_3592 52 COG1846 MarR, Transcriptional regulators Transcription 110639325 Nonpathogen - hypothetical protein CHU_2950 1 None None None 110637643 Common - CHU large protein; beta-xylosidase/endoglucanase CHU_1238 33 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 110639593 Common - CHU large protein; uncharacterized CHU_3220 89 COG3889 COG3889, Predicted solute binding protein General function prediction only 110636885 Common yliA ABC transporter, ATP-binding protein CHU_0463 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 110638559 Common - DNA helicase CHU_2163 87 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 110639674 Common - conserved hypothetical protein; possible surface antigen CHU_3302 16 COG3292 COG3292, Predicted periplasmic ligand-binding sensor domain Signal transduction mechanisms 110637409 Nonpathogen - hypothetical protein CHU_0999 1 None None None 110639166 Common arcB sensor histidine kinase/response regulator fusion protein CHU_2784 226 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110637157 Common - cation efflux system protein CHU_0737 206 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 110637116 Common - hypothetical protein CHU_0696 55 COG3781 COG3781, Predicted membrane protein Function unknown 110637254 Common - CHU large protein; uncharacterized CHU_0835 33 None None None 110636683 Common - hypothetical protein CHU_0258 3 None None None 110638202 Nonpathogen - hypothetical protein CHU_1802 2 None None None 110638757 Nonpathogen - hypothetical protein CHU_2366 1 None None None 110636716 Common - hypothetical protein CHU_0292 58 COG1774 COG1774, Uncharacterized homolog of PSP1 Function unknown 110638114 Nonpathogen - hypothetical protein CHU_1714 3 COG1928 PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase Posttranslational modification, protein turnover, chaperones 110638583 Nonpathogen - hypothetical protein CHU_2187 1 None None None 110638187 Common rpsO 30S ribosomal protein S15 CHU_1787 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 110637336 Common ddlA D-alanine--D-alanine ligase A CHU_0924 207 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 110638602 Common coxN cytochrome c oxidase, subunit I CHU_2206 175 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 110638446 Common - hypothetical protein CHU_2050 12 None None None 110638099 Common - sterol desaturase family protein CHU_1699 53 COG3000 ERG3, Sterol desaturase Lipid metabolism 110636578 Common - conserved hypothetical protein; possible methanol dehydrogenase regulator CHU_0153 179 COG0714 COG0714, MoxR-like ATPases General function prediction only 110636482 Nonpathogen - hypothetical protein CHU_0055 1 None None None 110636535 Common - cytosine/adenosine deaminase CHU_0109 211 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 110638611 Common dcdA cytidine/deoxycytidylate deaminase (dCMP deaminase) CHU_2215 91 COG2131 ComEB, Deoxycytidylate deaminase Nucleotide transport and metabolism 110636626 Common - a-glycosyltransferase, glycosyltransferase family 4 protein CHU_0201 65 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110636615 Common moxR methanol dehydrogenase regulator CHU_0190 176 COG0714 COG0714, MoxR-like ATPases General function prediction only 110637320 Nonpathogen - hypothetical protein CHU_0906 1 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 110638532 Common yieN MoxR-like ATPase, possible regulator CHU_2136 172 COG0714 COG0714, MoxR-like ATPases General function prediction only 110637728 Nonpathogen - hypothetical protein CHU_1323 1 None None None 110637063 Common - hypothetical protein CHU_0643 61 COG3549 HigB, Plasmid maintenance system killer protein General function prediction only 110637892 Nonpathogen - hypothetical protein CHU_1488 1 None None None 110639615 Common ccmF cytochrome c-type biogenesis protein CHU_3242 139 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 110639034 Common rpoE RNA polymerase, sigma-E factor; heat shock and oxidative stress CHU_2649 73 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110640150 Common metG methionine--tRNA ligase (methionine tRNA synthetase) CHU_3785 158 COG0073 ARC1, EMAP domain General function prediction only 110638780 Common spoT guanosine polyphosphate pyrophosphohydrolase CHU_2390 126 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 110637978 Common - protoporphryninogen oxidase (PPO) CHU_1574 50 COG1232 HemY, Protoporphyrinogen oxidase Coenzyme metabolism 110638491 Common nfsA nitroreductase family protein CHU_2095 60 COG0778 NfnB, Nitroreductase Energy production and conversion 110636994 Common - hypothetical protein CHU_0574 16 None None None 110639532 Common rplB 50S ribosomal protein L2 CHU_3159 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 110637474 Common pacS cation-transporting ATPase CHU_1064 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 110637286 Common wcaL a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0870 55 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110636606 Common atpF ATP synthase, subunit B (H(+)-transporting two-sector ATPase) CHU_0181 163 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 110638694 Nonpathogen - hypothetical protein CHU_2300 4 None None None 110638740 Nonpathogen - hypothetical protein CHU_2349 1 None None None 110638874 Common algI alginate O-acetylation protein CHU_2487 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 110638464 Nonpathogen - hypothetical protein CHU_2068 1 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 110636644 Common - hypothetical protein CHU_0219 109 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 110638722 Common - hypothetical protein CHU_2331 28 COG5579 COG5579, Uncharacterized conserved protein Function unknown 110638042 Nonpathogen - hypothetical protein CHU_1640 1 None None None 110637913 Nonpathogen - hypothetical protein CHU_1509 1 None None None 110639333 Common - conserved hypothetical protein; possible GTPase CHU_2958 22 COG0218 COG0218, Predicted GTPase General function prediction only 110638830 Nonpathogen - hypothetical protein CHU_2442 1 None None None 110636917 Common - Na+ linked D-alanine glycine permease component CHU_0495 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 110637691 Common - copper binding protein, plastocyanin CHU_1286 26 COG3794 PetE, Plastocyanin Energy production and conversion 110637721 Common uhpB sensor histidine protein kinase CHU_1316 177 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 110638768 Common - hypothetical protein CHU_2377 2 None None None 110638674 Common htrB lipid A biosynthesis lauroyl acyltransferase (heat shock protein) CHU_2280 129 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 110636915 Common ppiC peptidylprolyl isomerase A (peptidyl-prolyl cis-trans isomerase) CHU_0493 201 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 110638718 Nonpathogen - hypothetical protein CHU_2326 4 None None None 110639024 Common metC cystathionine beta-lyase/cystathionine gamma-synthase CHU_2639 206 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 110636690 Nonpathogen - hypothetical protein CHU_0265 1 None None None 110640077 Nonpathogen - hypothetical protein CHU_3711 1 None None None 110639844 Nonpathogen - hypothetical protein CHU_3477 1 None None None 110638477 Common arcB sensor response histidine/response regulator fusion protein (sensor for arcA) CHU_2081 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110639414 Common rluA pseudouridylate synthase CHU_3040 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 110639179 Common zraS sensor kinase of Zn/Pb responsive two-component regulatory system CHU_2797 217 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 110639057 Common - hypothetical protein CHU_2672 40 COG0622 COG0622, Predicted phosphoesterase General function prediction only 110639491 Common yhjA possible cytochrome C peroxidase CHU_3118 93 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 110637698 Nonpathogen - hypothetical protein CHU_1293 1 None None None 110639448 Common umuC nucleotidyltransferase/DNA polymerase involved in DNA repair/SOS mutagenesis and repair CHU_3075 183 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 110637199 Nonpathogen - hypothetical protein CHU_0779 1 None None None 110638664 Common bglX b-glucosidase, glycoside hydrolase family 3 protein CHU_2268 138 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 110638714 Common - hypothetical protein CHU_2321 12 COG5646 COG5646, Uncharacterized conserved protein Function unknown 110638962 Common cheA two-component sensor histidine kinase CHU_2576 101 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 110639925 Common - thioredoxin CHU_3559 229 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 110640125 Common - conserved hypothetical protein; possible alkylhydroperoxidase CHU_3759 27 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 110640038 Common - 2-nitropropane dioxygenase CHU_3672 146 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 110640092 Common feoB ferrous iron transport protein B CHU_3726 177 COG0370 FeoB, Fe2+ transport system protein B Inorganic ion transport and metabolism 110638524 Nonpathogen - hypothetical protein CHU_2128 1 None None None 110636634 Nonpathogen - hypothetical protein CHU_0209 1 None None None 110639435 Common - Fe-S oxidoreductase, radical SAM superfamily CHU_3061 128 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 110637705 Nonpathogen - hypothetical protein CHU_1300 1 None None None 110638895 Nonpathogen - hypothetical protein CHU_2508 2 COG5653 COG5653, Protein involved in cellulose biosynthesis (CelD) Cell envelope biogenesis, outer membrane 110639306 Common - hypothetical protein CHU_2931 6 None None None 110637188 Common - CHU large protein; uncharacterized CHU_0768 20 None None None 110639759 Common rfbA glucose-1-phosphate thymidylyltransferase CHU_3390 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 110636738 Nonpathogen - hypothetical protein CHU_0314 3 None None None 110638094 Nonpathogen - hypothetical protein CHU_1693 1 None None None 110639133 Common hupB DNA-binding protein HU-beta CHU_2750 191 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 110638669 Nonpathogen - hypothetical protein CHU_2274 5 None None None 110637366 Common ygcM 6-pyruvoyl tetrahydrobiopterin synthase CHU_0956 75 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 110639047 Common - hypothetical protein CHU_2662 74 COG2363 COG2363, Uncharacterized small membrane protein Function unknown 110639831 Nonpathogen - hypothetical protein CHU_3464 1 None None None 110637168 Nonpathogen - hypothetical protein CHU_0748 1 None None None 110637028 Nonpathogen - hypothetical protein CHU_0608 1 None None None 110638887 Nonpathogen - hypothetical protein CHU_2500 6 COG4276 COG4276, Uncharacterized conserved protein Function unknown 110638311 Common purC phosphoribosylaminoimidazole-succinocarboxamide synthase CHU_1912 169 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 110637281 Nonpathogen - hypothetical protein CHU_0865 1 None None None 110639896 Common rsaD ABC transporter, ATP-binding/permease CHU_3530 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 110638787 Common - possible dihydrofolate reductase CHU_2398 18 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 110638566 Common tpn transposase CHU_2170 55 None None None 110636539 Common secDF bifunctional preprotein translocase subunit SecD/SecF CHU_0113 221 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 110636497 Common grpE molecular chaperone, heat shock protein CHU_0070 226 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 110640189 Nonpathogen - hypothetical protein CHU_3824 1 None None None 110637438 Common - hypothetical protein CHU_1028 73 COG2391 COG2391, Predicted transporter component General function prediction only 110639077 Common - acetyltransferase CHU_2692 9 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 110638952 Common - hypothetical protein CHU_2566 40 COG3647 COG3647, Predicted membrane protein Function unknown 110636879 Common - hypothetical protein CHU_0457 14 COG4850 COG4850, Uncharacterized conserved protein Function unknown 110640040 Common - hypothetical protein CHU_3674 2 None None None 110638197 Nonpathogen - hypothetical protein CHU_1797 3 None None None 110639274 Common - sensory box histidine kinase/response regulator CHU_2895 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110638273 Common yeeB acetyl esterase/ sugar hydrolase CHU_1874 16 COG0657 Aes, Esterase/lipase Lipid metabolism 110639372 Common - acetyltransferase, GNAT family CHU_2998 11 COG0456 RimI, Acetyltransferases General function prediction only 110639465 Common - hypothetical protein CHU_3092 28 COG2259 COG2259, Predicted membrane protein Function unknown 110638174 Common - hypothetical protein CHU_1774 25 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 110636657 Common - CHU large protein; antifreeze-related protein CHU_0232 35 None None None 110639804 Common - CHU large protein; uncharacterized CHU_3435 37 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 110637826 Nonpathogen - hypothetical protein CHU_1422 1 None None None 110640132 Common rluC ribosomal pseudouridine synthase C, large subunit CHU_3766 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 110637295 Nonpathogen - hypothetical protein CHU_0881 4 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 110640049 Common gldD possible gliding motility-related protein CHU_3683 4 None None None 110639935 Common - membrane protease subunit, SPFH domain/band 7 family CHU_3569 75 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 110636444 Common paaG enoyl-CoA hydratase CHU_0017 181 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 110639971 Common - hypothetical protein CHU_3605 4 None None None 110639355 Common - hypothetical protein CHU_2981 9 None None None 110638165 Common - hypothetical protein CHU_1765 2 None None None 110637531 Common - cyclic nucleotide binding regulatory protein CHU_1123 24 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110636870 Nonpathogen - hypothetical protein CHU_0448 1 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 110639093 Common - PorT-related protein CHU_2709 5 None None None 110637872 Common dpn possible adenine-specific DNA methylase CHU_1468 27 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 110639437 Nonpathogen - conserved hypothetical protein with cytochrome b5-like binding domain CHU_3063 10 COG4892 COG4892, Predicted heme/steroid binding protein General function prediction only 110639401 Nonpathogen - hypothetical protein CHU_3027 1 None None None 110637556 Nonpathogen - hypothetical protein CHU_1148 1 None None None 110637564 Nonpathogen - hypothetical protein CHU_1156 1 None None None 110639080 Common - hypothetical protein CHU_2696 7 None None None 110638733 Common sixA phosphohistidine phosphatase CHU_2342 73 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 110639695 Nonpathogen - hypothetical protein CHU_3323 1 None None None 110639243 Common envR transcriptional regulator, TetR family CHU_2862 64 COG1309 AcrR, Transcriptional regulator Transcription 110639237 Nonpathogen - hypothetical protein CHU_2856 1 None None None 110637975 Common - hypothetical protein CHU_1571 51 COG3876 COG3876, Uncharacterized protein conserved in bacteria Function unknown 110637802 Common acpP acyl carrier protein CHU_1398 210 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110640081 Common - conserved hypothetical protein, with PKD repeat CHU_3715 16 COG3291 COG3291, FOG: PKD repeat General function prediction only 110636731 Common - hypothetical protein CHU_0307 14 None None None 110637084 Common - hypothetical protein CHU_0664 2 None None None 110640030 Common fumC fumarate hydratase CHU_3664 231 COG0114 FumC, Fumarase Energy production and conversion 110638539 Common ate arginyl-tRNA:protein arginylyltransferase CHU_2143 12 COG2935 COG2935, Putative arginyl-tRNA:protein arginylyltransferase Posttranslational modification, protein turnover, chaperones 110636864 Common - hypothetical protein CHU_0442 2 None None None 110638912 Nonpathogen - hypothetical protein CHU_2525 1 None None None 110639380 Common htrA periplasmic serine protease CHU_3006 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 110637402 Common arcB two-component sensor histidine kinase CHU_0992 210 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 110637745 Common - hypothetical protein CHU_1340 24 COG4276 COG4276, Uncharacterized conserved protein Function unknown 110636898 Nonpathogen - hypothetical protein CHU_0476 1 None None None 110639360 Common - ABC transporter, permease CHU_2986 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 110639103 Common - conserved hypothetical protein; fructosamine kinase-like protein CHU_2720 70 COG3001 COG3001, Uncharacterized protein conserved in bacteria Function unknown 110636764 Nonpathogen - hypothetical protein CHU_0341 1 None None None 110637483 Common ybgC probable thioesterase CHU_1073 130 COG0824 FcbC, Predicted thioesterase General function prediction only 110637943 Common - probable integral outer membrane protein CHU_1539 6 None None None 110639125 Common mraY phospho-N-acetylmuramoyl-pentapeptide transferase CHU_2742 223 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 110638706 Common - hypothetical protein CHU_2312 4 None None None 110637766 Common - hypothetical protein CHU_1361 76 COG1259 COG1259, Uncharacterized conserved protein Function unknown 110638340 Nonpathogen - hypothetical protein CHU_1941 1 None None None 110638356 Common gcp O-sialoglycoprotein endopeptidase CHU_1957 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 110638737 Common cspB cold shock protein CHU_2346 166 COG1278 CspC, Cold shock proteins Transcription 110640090 Common alr putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase CHU_3724 209 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 110639409 Common - leucine-rich protein CHU_3035 13 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 110636496 Common obgE GTPase ObgE CHU_0069 249 COG0536 Obg, Predicted GTPase General function prediction only 110639965 Common amtB ammonium transporter CHU_3599 203 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 110637587 Nonpathogen - hypothetical protein CHU_1179 1 None None None 110637845 Common - transposase CHU_1441 11 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 110638330 Nonpathogen - hypothetical protein CHU_1931 1 None None None 110638106 Common clpP endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit) CHU_1706 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 110639140 Nonpathogen - hypothetical protein CHU_2757 1 None None None 110640109 Common leuD 3-isopropylmalate dehydratase, small subunit CHU_3743 213 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 110636733 Common - hypothetical protein CHU_0309 4 None None None 110638085 Nonpathogen - hypothetical protein CHU_1684 1 None None None 110638024 Common accC biotin carboxylase, subunit of acetyl CoA carboxylase CHU_1622 234 COG0439 AccC, Biotin carboxylase Lipid metabolism 110638995 Common - hypothetical protein CHU_2609 7 None None None 110636784 Common - hypothetical protein CHU_0361 11 None None None 110636650 Nonpathogen - hypothetical protein CHU_0225 1 None None None 110636437 Common - hypothetical protein CHU_0010 4 None None None 110637716 Nonpathogen - hypothetical protein CHU_1311 2 None None None 110637540 Common crp transcriptional regulator CHU_1132 225 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 110638076 Nonpathogen - hypothetical protein CHU_1675 2 None None None 110637667 Common ureF urease accessory protein CHU_1262 40 COG0830 UreF, Urease accessory protein UreF Posttranslational modification, protein turnover, chaperones 110638657 Common - hypothetical protein CHU_2261 3 None None None 110636803 Nonpathogen - hypothetical protein CHU_0380 1 None None None 110637651 Common adhP zinc-type alcohol dehydrogenase CHU_1246 203 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 110639367 Common yiaD possible outer membrane protein CHU_2993 152 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 110639452 Common - hypothetical protein CHU_3079 6 None None None 110636777 Common ch1I magnesium chelatase, subunit ChlI CHU_0354 207 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 110638701 Common - hydrolase, alpha/beta fold family CHU_2307 198 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110640097 Common apgM phosphoglyceromutase CHU_3731 125 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 110640170 Nonpathogen - hypothetical protein CHU_3805 2 None None None 110636455 Common ruvA Holliday junction DNA helicase CHU_0028 210 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 110637811 Common - conserved hypothetical protein; possible MarC family, integral membrane protein CHU_1407 158 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 110638375 Common - thiol-disulfide isomerase or thioredoxin CHU_1976 70 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110638153 Common dfr dihydrofolate reductase CHU_1753 53 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 110638512 Common acpP acyl carrier protein CHU_2116 47 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 110639188 Common - outer membrane efflux protein/ immunoreative antigen CHU_2807 90 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 110636779 Nonpathogen - hypothetical protein CHU_0356 1 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 110636592 Common - probable glycosyltransferase/acetylmuramyl pentapeptide phosphotransferase CHU_0167 225 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 110638929 Common tpn transposase, IS3 family CHU_2543 144 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 110639196 Common dtd D-tyrosyl-tRNA deacylase CHU_2815 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 110636972 Common - hypothetical protein CHU_0552 4 None None None 110637939 Common - hypothetical protein CHU_1535 5 COG2940 COG2940, Proteins containing SET domain General function prediction only 110638915 Common - CHU large protein; uncharacterized CHU_2528 48 None None None 110638509 Common yheN GlcNAc deacetylase-related protein, carbohydrate esterase family 4 protein CHU_2113 94 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 110638234 Common - pseudouridylate synthase CHU_1834 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 110637552 Common hemN coproporphyrinogen III oxidase CHU_1144 203 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 110637772 Common ygjT probable integral membrane protein, TerC family CHU_1367 98 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 110639802 Common - hypothetical protein CHU_3433 3 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 110636675 Common ndh NADH dehydrogenase CHU_0250 177 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 110638805 Common - multiple sugar-binding ABC transporter, ATP-binding protein CHU_2416 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 110639770 Common - Tetrapyrrole-related methytransferase CHU_3401 209 COG0313 COG0313, Predicted methyltransferases General function prediction only 110636967 Common - hypothetical protein CHU_0547 6 None None None 110639628 Common - hypothetical protein CHU_3256 18 None None None 110637608 Nonpathogen - hypothetical protein CHU_1200 1 None None None 110638108 Common - conserved hypothetical protein, possible transcriptional regulator CHU_1708 7 COG1396 HipB, Predicted transcriptional regulators Transcription 110638137 Common - possible 2-methylthioadenine synthetase CHU_1737 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 110639600 Common - redoxin family protein CHU_3227 106 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 110637680 Common gltA citrate synthase CHU_1275 194 COG0372 GltA, Citrate synthase Energy production and conversion 110639255 Nonpathogen - hypothetical protein CHU_2875 1 None None None 110636792 Common aroC chorismate synthase CHU_0369 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 110637205 Common yajF possible ROK (nagC/xylR) family protein CHU_0785 156 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 110639777 Common ppnK inorganic polyphosphate/ATP-NAD kinase CHU_3408 241 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 110636723 Nonpathogen - hypothetical protein CHU_0299 1 COG3755 COG3755, Uncharacterized protein conserved in bacteria Function unknown 110638141 Common yneH glutaminase CHU_1741 72 COG2066 GlsA, Glutaminase Amino acid transport and metabolism 110638620 Nonpathogen - hypothetical protein CHU_2224 1 None None None 110639517 Common rpmD 50S ribosomal protein L30 CHU_3144 88 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 110637305 Nonpathogen - hypothetical protein CHU_0891 2 None None None 110639515 Common secY preprotein translocase subunit SecY CHU_3142 233 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 110637439 Common - transporter component CHU_1029 5 None None None 110640146 Common - hypothetical protein CHU_3781 57 COG3550 HipA, Uncharacterized protein related to capsule biosynthesis enzymes General function prediction only 110638742 Nonpathogen - hypothetical protein CHU_2351 1 None None None 110638502 Nonpathogen - hypothetical protein CHU_2106 1 None None None 110637572 Common amiA N-acetylmuramoyl-L-alanine amidase I CHU_1164 174 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 110638579 Common ruvC Holliday junction resolvase CHU_2183 198 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 110638394 Common alaDH alanine dehydrogenase CHU_1995 167 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 110639702 Common fabG short chain dehydrogenase CHU_3333 238 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 110638400 Common - hypothetical protein CHU_2001 5 COG4696 COG4696, Uncharacterized protein conserved in bacteria Function unknown 110638127 Common cel endoglucanase-related protein, glycoside hydrolase family 5 protein CHU_1727 15 None None None 110636770 Common - hypothetical protein CHU_0347 13 COG5343 COG5343, Uncharacterized protein conserved in bacteria Function unknown 110638823 Common - conserved hypothetical protein; membrane protein CHU_2434 27 COG4760 COG4760, Predicted membrane protein Function unknown 110640198 Common - integral membrane protein CHU_3833 32 COG0392 COG0392, Predicted integral membrane protein Function unknown 110640151 Nonpathogen - hypothetical protein CHU_3786 1 None None None 110637737 Common nirB nitrite reductase (NAD(P)H), large subunit CHU_1332 201 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 110639739 Common arnT glycosyltransferase, PMT family CHU_3370 85 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 110640206 Common - conserved hypothetical protein; possible cytochrome c variant CHU_3841 5 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 110636907 Common natA ABC transporter, ATP-binding protein CHU_0485 249 COG4152 COG4152, ABC-type uncharacterized transport system, ATPase component General function prediction only 110637675 Common hisB imidazole glycerol-phosphate dehydratase/histidinol phosphatase CHU_1270 216 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 110639205 Common gcvT glycine cleavage system aminomethyltransferase T CHU_2824 179 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 110636922 Nonpathogen - hypothetical protein CHU_0500 1 None None None 110637364 Common slyA transcriptional regulator CHU_0954 30 COG1846 MarR, Transcriptional regulators Transcription 110638264 Common yebU tRNA and rRNA cytosine-C5-methylase CHU_1865 206 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 110637212 Common - hypothetical protein CHU_0792 5 COG3274 COG3274, Uncharacterized protein conserved in bacteria Function unknown 110637927 Nonpathogen - hypothetical protein CHU_1523 1 None None None 110639888 Common - hypothetical protein CHU_3522 5 None None None 110640066 Nonpathogen - hypothetical protein CHU_3700 1 None None None 110637543 Common uspA universal stress protein CHU_1135 55 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 110639194 Common - conserved hypothetical protein; possible glucosidase CHU_2813 25 None None None 110636979 Common cyc cytochrome c551/c552 CHU_0559 26 COG4654 COG4654, Cytochrome c551/c552 Energy production and conversion 110638649 Common - hypothetical protein CHU_2253 3 None None None 110638353 Common nlpC lipoprotein; possible cell wall-associated hydrolase CHU_1954 157 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 110637781 Common nuoG NADH dehydrogenase I chain G CHU_1376 179 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 110636948 Common - conserved hypothetical protein, with TPR repeat CHU_0528 44 COG4995 COG4995, Uncharacterized protein conserved in bacteria Function unknown 110639045 Common - conserved hypothetical protein, auxin-regulated like CHU_2660 10 None None None 110637054 Common - hypothetical protein CHU_0634 3 None None None 110639071 Nonpathogen - hypothetical protein CHU_2686 1 None None None 110638120 Nonpathogen - hypothetical protein CHU_1720 1 None None None 110636438 Common - fatty acid hydroxylase CHU_0011 14 COG3000 ERG3, Sterol desaturase Lipid metabolism 110637703 Common araC transcriptional regulator, ara operon CHU_1298 48 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110639000 Common nuoM NADH:ubiquinone oxidoreductase chain M CHU_2614 210 COG1008 NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) Energy production and conversion 110637998 Common - fatty acid desaturase (stearoyl-CoA desaturase) CHU_1595 61 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 110639232 Nonpathogen - possible heavy metal membrane efflux protein CHU_2851 1 None None None 110638772 Common - hypothetical protein CHU_2382 54 COG3781 COG3781, Predicted membrane protein Function unknown 110636646 Common - hypothetical protein CHU_0221 13 None None None 110639933 Common - hypothetical protein CHU_3567 9 None None None 110637005 Common - hypothetical protein CHU_0585 9 COG4270 COG4270, Predicted membrane protein Function unknown 110637133 Common - redox protein CHU_0713 41 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 110637383 Common - hypothetical protein CHU_0973 144 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 110640191 Common - transcriptional regulator, AraC family CHU_3826 96 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110637447 Common lpxC bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase CHU_1037 191 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 110636613 Common - conserved hypothetical protein; possible adenylate cyclase family protein CHU_0188 48 COG2954 COG2954, Uncharacterized protein conserved in bacteria Function unknown 110637013 Common - conserved hypothetical protein; possible permease CHU_0593 5 None None None 110638864 Nonpathogen - hypothetical protein CHU_2477 1 None None None 110639286 Nonpathogen - hypothetical protein CHU_2911 2 None None None 110637830 Common - hypothetical protein CHU_1426 15 COG5646 COG5646, Uncharacterized conserved protein Function unknown 110639422 Common - hypothetical protein CHU_3048 123 COG1881 COG1881, Phospholipid-binding protein General function prediction only 110637341 Common - a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0929 80 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110637839 Common metF 5,10-methylenetetrahydrofolate reductase CHU_1435 157 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 110638761 Nonpathogen - hypothetical protein CHU_2370 1 None None None 110637244 Nonpathogen - hypothetical protein CHU_0825 1 None None None 110638160 Common - hypothetical protein CHU_1760 4 None None None 110637313 Nonpathogen - hypothetical protein CHU_0899 2 None None None 110638572 Nonpathogen - conserved hypothetical protein; possible exporter of O-antigen and teichoic acid CHU_2176 9 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 110638621 Common - CHU large protein; gliding motility-related protein; possible adhesin AidA-related CHU_2225 151 None None None 110637327 Common wca a-glycosyltransferase-related protein, glycosyltransferase family 4 protein CHU_0913 104 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 110640111 Common ilvD dihydroxy-acid dehydratase CHU_3745 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 110638074 Nonpathogen - hypothetical protein CHU_1673 1 None None None 110639239 Nonpathogen - hypothetical protein CHU_2858 1 None None None 110638814 Common merR transcriptional regulator CHU_2425 11 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 110637356 Common - hypothetical protein CHU_0946 19 COG2374 COG2374, Predicted extracellular nuclease General function prediction only 110639601 Common proS prolyl-tRNA synthetase CHU_3228 246 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 110636822 Common - glucoamylase-related protein, possible trehalase CHU_0399 72 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 110638101 Common purA adenylosuccinate synthetase CHU_1701 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 110638432 Common crtB phytoene synthase CHU_2036 85 COG1562 ERG9, Phytoene/squalene synthetase Lipid metabolism 110639938 Common glnK nitrogen regulatory protein P-II CHU_3572 183 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 110638850 Common - conserved hypothetical protein; possible UDP-N-acetylglucosamine enolpyruvyl transferase CHU_2463 5 None None None 110639799 Common slyD peptidylprolyl isomerase (FKBP-type peptidyl-prolyl cis-trans isomerase) CHU_3430 127 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 110637197 Nonpathogen - hypothetical protein CHU_0777 1 None None None 110637493 Nonpathogen - hypothetical protein CHU_1083 1 None None None 110639060 Common - hypothetical protein CHU_2675 152 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 110639629 Common lnt apolipoprotein N-acyltransferase CHU_3257 156 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 110636756 Common hemA glutamyl-tRNA reductase CHU_0333 180 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 110637078 Common glmU UDP-N-acetylglucosamine diphosphorylase (N-acetyl glucosamine-1-phosphate uridyltransferase) CHU_0658 229 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 110638638 Common - mismatch repair ATPase, MutS family CHU_2242 55 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 110639150 Nonpathogen - hypothetical protein CHU_2767 1 None None None 110638681 Nonpathogen - hypothetical protein CHU_2287 1 None None None 110636691 Common yajR tetracycline resistance protein CHU_0266 153 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 110638774 Common - hypothetical protein CHU_2384 4 None None None 110638652 Common - possible Zn-dependent hydrolase CHU_2256 125 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 110636447 Common rfbA glucose-1-phosphate thymidyltransferase CHU_0020 230 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 110639548 Common tufB elongation factor Tu CHU_3175 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 110637987 Common dmpI 4-oxalocrotonate tautomerase family enzyme CHU_1584 40 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 110637708 Nonpathogen - hypothetical protein CHU_1303 2 None None None 110639712 Common aefA mechanosensitive ion channel protein CHU_3343 227 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 110639350 Common bioA adenosylmethionine--8-amino-7-oxononanoate transaminase CHU_2976 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 110638900 Common acrD cation/multidrug efflux pump CHU_2513 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 110639724 Nonpathogen - hypothetical protein CHU_3355 1 None None None 110636983 Common - probable membrane protein CHU_0563 121 COG2855 COG2855, Predicted membrane protein Function unknown 110639873 Common - hypothetical protein CHU_3507 4 None None None 110638930 Nonpathogen - hypothetical protein CHU_2544 1 None None None 110638239 Nonpathogen - hypothetical protein CHU_1839 1 None None None 110637472 Common xylR possible regulator of xyl operon CHU_1062 56 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 110636938 Common - hypothetical protein CHU_0517 8 None None None 110639760 Common rfbB dTDP-glucose 4,6 dehydratase CHU_3391 233 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 110639654 Common tpn transposase, IS3 family CHU_3282 144 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 110636863 Nonpathogen yfgA possible membrane protein CHU_0441 1 None None None 110637479 Nonpathogen - hypothetical protein CHU_1069 1 None None None 110638269 Nonpathogen - hypothetical protein CHU_1870 1 None None None 110638793 Nonpathogen - hypothetical protein CHU_2404 1 None None None 110639740 Common - membrane-associated phospholipid phosphatase CHU_3371 35 None None None 110637109 Common ctpA carboxyl-terminal protease CHU_0689 181 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 110637271 Common - hypothetical protein CHU_0855 7 None None None 110639893 Common - conserved hypothetical protein; probable membrane protein CHU_3527 12 COG4682 COG4682, Predicted membrane protein Function unknown 110638543 Common - hypothetical protein CHU_2147 110 COG0397 COG0397, Uncharacterized conserved protein Function unknown 110639142 Common - acetyltransferase, GNAT family CHU_2759 12 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 110637470 Common rmeD probable transcriptional regulator, MerR family CHU_1060 40 COG0789 SoxR, Predicted transcriptional regulators Transcription 110638909 Common - scaffold protein for iron-sulphur cluster assembly CHU_2522 163 COG0316 IscA, Uncharacterized conserved protein Function unknown 110636962 Common ptpA protein-tyrosine-phosphatase CHU_0542 11 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 110638285 Common ymdC possible cardiolipin synthase CHU_1886 116 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 110637138 Common aroB 3-dehydroquinate synthase CHU_0718 205 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 110638227 Common groES co-chaperonin GroES CHU_1827 215 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 110639632 Nonpathogen - hypothetical protein CHU_3260 1 None None None 110638551 Common chrA chromate transporter, permease component CHU_2155 116 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 110636905 Common truA tRNA pseudouridine synthase A CHU_0483 233 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 110638065 Common - hypothetical protein CHU_1664 22 COG4895 COG4895, Uncharacterized conserved protein Function unknown 110637226 Nonpathogen - hypothetical protein CHU_0806 2 None None None 110639305 Common - hypothetical protein CHU_2930 12 None None None 110636950 Common - CHU large protein; uncharacterized CHU_0530 22 None None None 110639780 Common uppS undecaprenyl pyrophosphate synthetase (di-trans,poly-cis-decaprenylcistransferase) CHU_3411 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 110636801 Common - hypothetical protein CHU_0378 11 COG3361 COG3361, Uncharacterized conserved protein Function unknown 110636566 Common - hypothetical protein CHU_0140 5 None None None 110639816 Nonpathogen - hypothetical protein CHU_3449 1 None None None 110636452 Common gatA glutamyl-tRNA(Gln) amidotransferase subunit A CHU_0025 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 110636503 Nonpathogen - hypothetical protein CHU_0076 6 None None None 110636599 Nonpathogen - gliding related protein; possible gldN and/or gldO CHU_0174 1 None None None 110638080 Common dinB DNA polymerase IV CHU_1679 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 110639018 Common napA Na(+)/H(+) antiporter CHU_2633 204 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 110638241 Common cvrA Na(+)/H(+) exchanger CHU_1841 136 COG3263 COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain Inorganic ion transport and metabolism 110636869 Common - probable hydrolase CHU_0447 124 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 110637432 Nonpathogen - hypothetical protein CHU_1022 5 COG3202 COG3202, ATP/ADP translocase Energy production and conversion 110638214 Common - hypothetical protein CHU_1814 27 None None None 110638521 Common paaK phenylacetate-CoA ligase CHU_2125 116 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 110639344 Common - hypothetical protein CHU_2970 71 COG1912 COG1912, Uncharacterized conserved protein Function unknown 110637848 Common dprA DNA processing protein CHU_1444 209 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 110639554 Nonpathogen - hypothetical protein CHU_3181 1 None None None 110638863 Common - probable sigma-70 factor, ECF subfamily CHU_2476 44 COG4941 COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain Transcription 110640022 Nonpathogen - hypothetical protein CHU_3656 1 None None None 110637395 Nonpathogen - hypothetical protein CHU_0985 1 None None None 110640107 Common leuA 2-isopropylmalate synthase CHU_3741 216 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 110640100 Common purE phosphoribosylaminoimidazole carboxylase CHU_3734 233 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 110636523 Common rpmH 50S ribosomal protein L34 CHU_0096 9 COG0230 RpmH, Ribosomal protein L34 Translation, ribosomal structure and biogenesis 110637486 Common yciO translation factor CHU_1076 198 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 110637906 Common cusB possible component of copper transport system CHU_1502 103 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 110638871 Common - hypothetical protein CHU_2484 12 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 110638386 Common covS two-component sensor histidine kinase CHU_1987 222 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 110637126 Common arsR transcriptional regulator, arsR family CHU_0706 35 COG0640 ArsR, Predicted transcriptional regulators Transcription 110637097 Common - hypothetical protein CHU_0677 140 COG1741 COG1741, Pirin-related protein General function prediction only 110637601 Common - hypothetical protein CHU_1193 82 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 110638846 Common dnaJ chaperone with DnaJ domain; heat shock protein CHU_2458 217 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 110639402 Common - two-component response regulator CHU_3028 55 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 110637022 Common - lipid A core--O-antigen ligase CHU_0602 4 None None None 110638588 Common ispG 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase CHU_2192 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 110637612 Nonpathogen - hypothetical protein CHU_1204 1 None None None 110638132 Nonpathogen - hypothetical protein CHU_1732 1 None None None 110636873 Common nrdA ribonucleoside diphosphate reductase, alpha subunit CHU_0451 222 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 110639168 Nonpathogen - hypothetical protein CHU_2786 4 None None None 110639030 Common ydhJ possible membrane protein CHU_2645 49 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 110638727 Nonpathogen - hypothetical protein CHU_2336 1 None None None 110639813 Common - phytoene dehydrogenase CHU_3446 29 COG1233 COG1233, Phytoene dehydrogenase and related proteins Secondary metabolites biosynthesis, transport, and catabolism 110638594 Common - hypothetical protein CHU_2198 3 None None None 110639828 Common - hypothetical protein CHU_3461 83 COG2307 COG2307, Uncharacterized protein conserved in bacteria Function unknown 110636512 Common - hypothetical protein CHU_0085 9 None None None 110637660 Common livG branched-chain amino acid ABC transporter, periplasmic protein CHU_1255 99 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 110640135 Common - hypothetical protein CHU_3769 29 COG3394 COG3394, Uncharacterized protein conserved in bacteria Function unknown 110636844 Common - hypothetical protein CHU_0421 10 COG4278 COG4278, Uncharacterized conserved protein Function unknown 110637464 Common - hypothetical protein CHU_1054 59 COG3046 COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase General function prediction only 110637689 Nonpathogen - hypothetical protein CHU_1284 1 None None None 110637880 Nonpathogen - hypothetical protein CHU_1476 1 None None None 110637283 Nonpathogen - hypothetical protein CHU_0867 2 None None None 110637465 Common - deoxyribodipyrimidine photolyase CHU_1055 8 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 110638116 Common folD bifunctional protein: methylenetetrahydrofolate dehydrogenase (NADP+); methenyltetrahydrofolate cyclohydrolase CHU_1716 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 110637131 Common - hypothetical protein CHU_0711 17 COG3673 COG3673, Uncharacterized conserved protein Function unknown 110639769 Common metK S-adenosylmethionine synthetase CHU_3400 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 110637453 Nonpathogen - hypothetical protein CHU_1043 1 None None None