Sphingopyxis alaskensis RB2256 F plasmid, complete sequence NC_008036 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 98152873 Nonpathogen - hypothetical protein Sala_3190 2 None None None 98152881 Common - nickel-dependent hydrogenase, large subunit Sala_3198 93 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 98152899 Common - phage transcriptional regulator, AlpA Sala_3216 36 COG3311 AlpA, Predicted transcriptional regulator Transcription 98152884 Common - hydrogenase maturation protease Sala_3201 43 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 98152892 Common - phosphoheptose isomerase Sala_3209 121 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 98152897 Common - hydrogenase accessory protein HypB Sala_3214 151 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 98152888 Common - nitrogen-fixing NifU-like Sala_3205 85 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 98152890 Common - (NiFe) hydrogenase maturation protein HypF Sala_3207 109 COG0068 HypF, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 98152886 Common - hypothetical protein Sala_3203 14 None None None 98152877 Common - uncharacterized membrane-anchored protein Sala_3194 41 COG4949 COG4949, Uncharacterized membrane-anchored protein conserved in bacteria Function unknown 98152900 Common - hypothetical protein Sala_3217 11 None None None 98152889 Common - NHL repeat Sala_3206 15 None None None 98152875 Nonpathogen - hypothetical protein Sala_3192 9 None None None 98152882 Nonpathogen - hypothetical protein Sala_3199 2 COG3372 COG3372, Uncharacterized conserved protein Function unknown 98152894 Common - Hydrogenase expression/formation protein HypE Sala_3211 140 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 98152879 Nonpathogen - hypothetical protein Sala_3196 1 None None None 98152893 Common - hydrogenase expression/formation protein HypD Sala_3210 109 COG0409 HypD, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 98152880 Common - NADH ubiquinone oxidoreductase, 20 kDa subunit Sala_3197 80 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 98152885 Nonpathogen - hypothetical protein Sala_3202 3 None None None 98152898 Nonpathogen - hypothetical protein Sala_3215 1 None None None 98152874 Common - MobA/MobL protein Sala_3191 119 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 98152891 Common - hydrogenase assembly chaperone hypC/hupF Sala_3208 79 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 98152887 Nonpathogen - hypothetical protein Sala_3204 1 None None None 98152872 Common - hypothetical protein Sala_3189 8 None None None 98152896 Common - Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)-like Sala_3213 32 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 98152895 Common - high-affinity nickel-transporter Sala_3212 21 COG2215 COG2215, ABC-type uncharacterized transport system, permease component General function prediction only 98152878 Common - two component, sigma54 specific, transcriptional regulator, Fis family Sala_3195 171 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 98152901 Common - AMP-dependent synthetase and ligase Sala_3218 222 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 98152883 Nonpathogen - hypothetical protein Sala_3200 2 None None None 98152876 Nonpathogen - Conjugal transfer TraD Sala_3193 10 None None None