Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome NC_007633 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 83319561 Pathogen - hypothetical protein MCAP_0785 1 None None None 83319647 Common rplM 50S ribosomal protein L13 MCAP_0663 225 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 83319477 Common - hypothetical protein MCAP_0572 15 COG3599 DivIVA, Cell division initiation protein Cell division and chromosome partitioning 83319674 Common aspS aspartyl-tRNA synthetase MCAP_0323 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 83319580 Common rpe ribulose-phosphate 3-epimerase MCAP_0260 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 83319769 Common rpsE 30S ribosomal protein S5 MCAP_0679 234 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 83319551 Common rsgA ribosome small subunit-dependent GTPase A MCAP_0261 161 COG1162 COG1162, Predicted GTPases General function prediction only 83319760 Common - hypothetical protein MCAP_0739 28 COG2267 PldB, Lysophospholipase Lipid metabolism 83319576 Common fmt methionyl-tRNA formyltransferase MCAP_0520 214 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 83319986 Common - hypothetical protein MCAP_0169 10 None None None 83319630 Pathogen - hypothetical protein MCAP_0278 1 None None None 83319624 Common - hypothetical protein MCAP_0726 21 None None None 83319396 Common ileS isoleucyl-tRNA synthetase MCAP_0393 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 83319715 Common - hydrolase, alpha/beta fold family MCAP_0606 5 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 83319429 Pathogen - lipoprotein, putative MCAP_0526 1 None None None 83319380 Common - ABC transporter permease protein p69 MCAP_0729 17 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 83319589 Common - hypothetical protein MCAP_0322 2 None None None 83319837 Common - ascorbate-specific PTS system enzyme IIC/IIB MCAP_0590 37 COG3037 SgaT, Uncharacterized protein conserved in bacteria Function unknown 83319544 Common - hypothetical protein MCAP_0725 16 None None None 83319978 Common - 1-phosphofructokinase, putative MCAP_0852 74 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 83319741 Common pdhC branched-chain alpha-keto acid dehydrogenase subunit E2 MCAP_0227 204 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 83319805 Common - hypothetical protein MCAP_0259 18 COG1564 THI80, Thiamine pyrophosphokinase Coenzyme metabolism 83319645 Common pepA2 cytosol aminopeptidase MCAP_0195 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 83319329 Common - endonuclease IV MCAP_0060 100 COG0648 Nfo, Endonuclease IV DNA replication, recombination, and repair 83319547 Common - hypothetical protein MCAP_0811 5 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 83319967 Common ptsG PTS system, glucose-specific IIABC component MCAP_0094 52 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 83319540 Common folC folate synthetase-polyglutamyl folate synthetase MCAP_0775 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 83319597 Common rplN 50S ribosomal protein L14 MCAP_0686 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 83319701 Common - plasmid replication-initiation protein homolog MCAP_0277 3 None None None 83319870 Common map methionine aminopeptidase, type I MCAP_0675 247 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 83319410 Common - hypothetical protein MCAP_0425 2 None None None 83319940 Common ftsH ATP-dependent metalloprotease FtsH MCAP_0017 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 83319604 Common - chromate ion transporter (CHR) family, putative MCAP_0197 38 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 83320002 Common - sorbitol-6-phosphate dehydrogenase MCAP_0029 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 83319878 Common - Peptidase C39 family protein MCAP_0509 27 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 83319353 Common - regulatory protein PfoR MCAP_0243 11 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 83319527 Common mutM formamidopyrimidine-DNA glycosylase MCAP_0635 179 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 83319822 Common gid tRNA (uracil-5-)-methyltransferase Gid MCAP_0476 154 COG1206 Gid, NAD(FAD)-utilizing enzyme possibly involved in translation Translation, ribosomal structure and biogenesis 83319517 Common rnpA ribonuclease P protein component MCAP_0869 31 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 83319480 Common - ABC transporter, ATP-binding protein MCAP_0123 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 83319750 Common ftsZ cell division protein FtsZ MCAP_0390 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 83319466 Common pdhA pyruvate dehydrogenase complex, EI component, alpha subunit MCAP_0225 154 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 83319668 Common - hypothetical protein MCAP_0263 2 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 83319863 Common nrdI ribonucleotide reductase stimulatory protein MCAP_0100 37 COG1780 NrdI, Protein involved in ribonucleotide reduction Nucleotide transport and metabolism 83319472 Pathogen - lipoprotein, putative MCAP_0231 1 None None None 83319452 Common pyk pyruvate kinase MCAP_0221 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 83320030 Common dnaX DNA polymerase III gamma-tau subunits MCAP_0008 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 83320050 Common - conserved hypothetical protein TIGR00150 MCAP_0266 175 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 83320035 Common truA tRNA pseudouridine synthase A MCAP_0665 193 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 83319779 Common - aldehyde dehydrogenase (NAD) family protein MCAP_0461 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 83320018 Common - hypothetical protein MCAP_0019 12 None None None 83319921 Pathogen - hypothetical protein MCAP_0816 1 None None None 83319562 Pathogen - hypothetical protein MCAP_0283 1 None None None 83319335 Common rplD 50S ribosomal protein L4 MCAP_0695 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 83319619 Common scpA chromosomal segregation and condensation protein A MCAP_0602 141 COG1354 COG1354, Uncharacterized conserved protein Function unknown 83319294 Pathogen - hypothetical protein MCAP_0564 1 None None None 83319598 Common ppa inorganic pyrophosphatase MCAP_0581 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 83319785 Common - PTS system, IIBC component, putative MCAP_0787 49 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 83319804 Common atpF ATP synthase F0, B subunit MCAP_0080 107 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 83319302 Common topA DNA topoisomerase I MCAP_0792 246 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 83319454 Common nanA N-acetylneuraminate lyase MCAP_0415 234 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 83319500 Common rpmC 50S ribosomal protein L29 MCAP_0688 2 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 83319261 Common - lipoprotein, putative MCAP_0471 2 None None None 83319792 Common thiI thiamine biosynthesis protein ThiI MCAP_0239 93 COG0301 ThiI, Thiamine biosynthesis ATP pyrophosphatase Coenzyme metabolism 83320062 Pathogen - transcriptional regulator, DeoR family, putative MCAP_0788 1 None None None 83319965 Common - recombination factor protein RarA MCAP_0515 241 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 83319485 Common valS valyl-tRNA synthetase MCAP_0258 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 83320046 Pathogen - hypothetical protein MCAP_0345 2 None None None 83319710 Common - hypothetical protein MCAP_0014 163 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 83319256 Common - hypothetical protein MCAP_0373 2 None None None 83319635 Common - hypothetical protein MCAP_0567 4 None None None 83319918 Pathogen - hypothetical protein MCAP_0354 2 None None None 83319853 Common - lipoprotein, putative MCAP_0312 14 None None None 83319409 Pathogen - hypothetical protein MCAP_0175 1 None None None 83319997 Common - oligopeptide ABC transporter, permease protein MCAP_0118 211 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 83319444 Common - hypothetical protein MCAP_0626 16 None None None 83319370 Common pheS phenylalanyl-tRNA synthetase, alpha subunit MCAP_0383 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 83319369 Common - hypothetical protein MCAP_0598 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 83320000 Common gmk guanylate kinase MCAP_0208 212 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 83320024 Common gltX glutamyl-tRNA synthetase MCAP_0130 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 83319285 Common - non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family MCAP_0363 230 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 83319682 Common - hypothetical protein MCAP_0170 15 None None None 83319953 Common - hypothetical protein MCAP_0444 15 None None None 83319336 Common prfA peptide chain release factor 1 MCAP_0144 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 83319950 Common - metallo-beta-lactamase superfamily protein, putative MCAP_0828 99 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 83319587 Common - ribonuclease H1, putative MCAP_0319 22 COG3341 COG3341, Predicted double-stranded RNA/RNA-DNA hybrid binding protein General function prediction only 83319538 Common - hypothetical protein MCAP_0146 2 None None None 83319417 Common tmk thymidylate kinase MCAP_0010 230 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 83319842 Common - hypothetical protein MCAP_0597 2 None None None 83319401 Common - membrane protein, putative (TraG/TraD family) MCAP_0559 35 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 83319836 Common - transcriptional regulator, Fur family, putative MCAP_0646 10 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 83319306 Common - hypothetical protein MCAP_0309 15 None None None 83319746 Common - mannitol-1-phosphate 5-dehydrogenase, putative MCAP_0032 33 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 83319268 Common - hypothetical protein MCAP_0771 2 None None None 83319773 Pathogen - hypothetical protein MCAP_0464 1 None None None 83319893 Common rplQ 50S ribosomal protein L17 MCAP_0669 215 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 83319422 Pathogen - hypothetical protein MCAP_0611 1 None None None 83319767 Pathogen gtsB glycerol ABC transporter, permease MCAP_0453 1 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 83319938 Pathogen - truncated membrane protein MCAP_0166 1 None None None 83319591 Common - lipoprotein, putative MCAP_0704 18 None None None 83319972 Common - hypothetical protein MCAP_0328 33 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 83319345 Common bcp bacterioferritin comigratory protein MCAP_0845 198 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 83319537 Common - hypothetical protein MCAP_0196 39 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 83319731 Common cysS cysteinyl-tRNA synthetase MCAP_0110 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 83319976 Common - hypothetical protein MCAP_0398 3 None None None 83319971 Common - hypothetical protein MCAP_0536 2 None None None 83319398 Common - conserved hypothetical cytosolic protein MCAP_0335 24 COG2740 COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination Transcription 83319626 Pathogen - lipoprotein, putative MCAP_0348 2 None None None 83319931 Common glyA serine hydroxymethyltransferase MCAP_0075 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 83319382 Pathogen - hypothetical protein MCAP_0183 1 None None None 83320004 Common deoC deoxyribose-phosphate aldolase MCAP_0755 138 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 83319608 Common - sodium:solute symporter (SSS) family MCAP_0416 82 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 83319748 Common ftsY signal recognition particle-docking protein FtsY MCAP_0481 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 83319494 Pathogen - hypothetical protein MCAP_0436 1 None None None 83319435 Common - hypothetical protein MCAP_0027 43 COG2865 COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen Transcription 83319555 Common - hypothetical protein MCAP_0489 2 None None None 83319542 Common pstB phosphate ABC transporter, ATP-binding protein MCAP_0483 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 83319755 Common - hypothetical protein MCAP_0612 4 None None None 83319927 Common rplK 50S ribosomal protein L11 MCAP_0065 247 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 83319717 Common - glycosyl transferase, group 2 family protein MCAP_0063 32 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 83319633 Pathogen - hypothetical protein MCAP_0403 1 None None None 83319869 Common dnaN DNA polymerase III, beta subunit MCAP_0002 214 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 83319479 Common plsX fatty acid/phospholipid synthesis protein MCAP_0491 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 83319309 Common - cytidine/deoxycytidylate deaminase zinc-binding domain protein MCAP_0007 43 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 83319946 Common dnaG DNA primase MCAP_0504 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 83319706 Common - potassium uptake protein, TrkA family, putative MCAP_0708 75 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 83319531 Common - hypothetical protein MCAP_0069 2 None None None 83319651 Common - lipoprotein, putative MCAP_0607 9 COG5279 CYK3, Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain Cell division and chromosome partitioning 83319859 Common - hypothetical protein MCAP_0473 46 COG3481 COG3481, Predicted HD-superfamily hydrolase General function prediction only 83319574 Common atpG F0F1 ATP synthase subunit gamma MCAP_0083 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 83319672 Common - hypothetical protein MCAP_0754 35 COG2253 COG2253, Uncharacterized conserved protein Function unknown 83319424 Common - hypothetical protein MCAP_0320 3 COG2267 PldB, Lysophospholipase Lipid metabolism 83319725 Common - GTPase EngB MCAP_0245 195 COG0218 COG0218, Predicted GTPase General function prediction only 83319903 Common - hypothetical protein MCAP_0387 89 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 83319752 Pathogen - hypothetical protein MCAP_0728 1 None None None 83319774 Pathogen - hypothetical protein MCAP_0180 1 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 83319474 Common atpA1 F0F1 ATP synthase subunit alpha MCAP_0082 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 83319666 Common uvrA excinuclease ABC, A subunit MCAP_0774 243 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 83319909 Common - glycoprotease family protein MCAP_0821 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 83319529 Common - hypothetical protein MCAP_0560 14 None None None 83319272 Pathogen - lipoprotein, putative MCAP_0442 1 None None None 83319698 Common arcB ornithine carbamoyltransferase, catabolic MCAP_0090 240 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 83319373 Common - hypothetical protein MCAP_0177 15 None None None 83319684 Common - hypothetical protein MCAP_0308 15 None None None 83319861 Common - lipoprotein, putative MCAP_0287 15 None None None 83319961 Common ldh L-lactate/malate dehydrogenase MCAP_0439 166 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 83319356 Common - ABC transporter, permease protein MCAP_0039 111 COG1079 COG1079, Uncharacterized ABC-type transport system, permease component General function prediction only 83319487 Common rpoB DNA-directed RNA polymerase subunit beta MCAP_0070 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 83319621 Pathogen - hypothetical protein MCAP_0705 1 COG0730 COG0730, Predicted permeases General function prediction only 83319872 Common rpsR 30S ribosomal protein S18 MCAP_0026 215 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 83319606 Common - ABC transporter, permease protein, putative MCAP_0270 5 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 83319520 Common gyrB DNA gyrase, B subunit MCAP_0041 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 83319316 Common infC translation initiation factor IF-3 MCAP_0205 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 83319412 Common ackA acetate kinase MCAP_0230 162 COG0282 ackA, Acetate kinase Energy production and conversion 83319355 Common - HAD-superfamily hydrolase subfamily IIB, protein MCAP_0751 69 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 83319476 Pathogen - hypothetical protein MCAP_0649 2 None None None 83319612 Common - Xaa-Pro peptidase MCAP_0341 248 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 83319360 Pathogen - ABC transporter, permease protein, putative MCAP_0798 2 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 83319277 Common - hypothetical protein MCAP_0056 2 None None None 83319790 Common parC DNA topoisomerase IV, A subunit MCAP_0456 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 83320064 Common - lipoprotein, putative MCAP_0782 15 None None None 83319593 Common - transporter, putative MCAP_0091 38 COG1288 COG1288, Predicted membrane protein Function unknown 83319283 Common - modification methylase, HemK family MCAP_0145 214 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 83319712 Common - hypothetical protein MCAP_0301 38 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 83319890 Common pncA pyrazinamidase/nicotinamidase MCAP_0859 127 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 83319999 Common - hypothetical protein MCAP_0077 2 None None None 83319883 Common deoD purine nucleoside phosphorylase MCAP_0849 81 COG0813 DeoD, Purine-nucleoside phosphorylase Nucleotide transport and metabolism 83319333 Common - ABC transporter, ATP-binding protein, putative MCAP_0587 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 83319320 Common - hypothetical protein MCAP_0137 10 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 83319459 Common - cation-transporting ATPase, E1-E2 family MCAP_0244 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 83319811 Pathogen - hypothetical protein MCAP_0795 2 None None None 83319375 Common - nucleoside kinase MCAP_0599 39 COG1428 COG1428, Deoxynucleoside kinases Nucleotide transport and metabolism 83320011 Common secE preprotein translocase, SecE subunit, putative MCAP_0113 2 None None None 83319299 Common - hypothetical protein MCAP_0552 166 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 162316928 Common rpsL 30S ribosomal protein S12 MCAP_0151 244 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 83319723 Common tig trigger factor MCAP_0517 210 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 83320037 Common scpB chromosomal segregation and condensation protein B MCAP_0601 121 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 83319499 Pathogen - hypothetical protein MCAP_0353 2 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 83319573 Common - hypothetical protein MCAP_0311 15 None None None 83319824 Common - hydrolase, TatD family MCAP_0124 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 83319266 Common - lipoprotein, putative MCAP_0042 21 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 83320032 Common - PTS system, N-acetylglucosamine-specific IIBC component, putative MCAP_0129 50 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 83319292 Common - hypothetical protein MCAP_0392 35 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 83319852 Common - ribosomal large subunit pseudouridine synthase, RluA family MCAP_0714 149 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 83319300 Common - hypothetical protein MCAP_0735 13 None None None 83319949 Pathogen - lipoprotein, putative MCAP_0352 2 COG2433 COG2433, Uncharacterized conserved protein Function unknown 83319687 Common nagA N-acetylglucosamine-6-phosphate deacetylase MCAP_0438 120 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 83319783 Common lysS lysyl-tRNA synthetase MCAP_0836 243 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 83319693 Common - phosphate ABC transporter, phosphate-binding protein, putative MCAP_0485 7 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 83319974 Common rplU 50S ribosomal protein L21 MCAP_0412 211 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 83319885 Pathogen - hypothetical protein MCAP_0562 1 None None None 83319866 Common - glycosyl hydrolase, family 13 MCAP_0191 166 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 83319519 Common - acyl carrier protein, putative MCAP_0647 2 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 83319419 Common - hypothetical protein MCAP_0579 2 None None None 83319315 Common - hypothetical protein MCAP_0638 7 COG4870 COG4870, Cysteine protease Posttranslational modification, protein turnover, chaperones 83319895 Common - hypothetical protein MCAP_0357 3 None None None 83319844 Common engA GTP-binding protein EngA MCAP_0577 227 COG1160 COG1160, Predicted GTPases General function prediction only 83319916 Common rplC 50S ribosomal protein L3 MCAP_0696 248 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 83319936 Common - lipoprotein, putative MCAP_0409 2 None None None 83319733 Pathogen - hypothetical protein MCAP_0294 1 None None None 83320053 Pathogen - lipoprotein, putative MCAP_0727 1 COG4026 COG4026, Uncharacterized protein containing TOPRIM domain, potential nuclease General function prediction only 83320048 Pathogen - lipoprotein, putative MCAP_0272 1 None None None 83319502 Common recA recombinase A MCAP_0551 245 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 83319442 Common parE DNA topoisomerase IV, B subunit MCAP_0457 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 83319794 Common - hypothetical protein MCAP_0518 2 None None None 83320022 Pathogen - lipoprotein, putative MCAP_0801 2 None None None 83319818 Common - hypothetical protein MCAP_0302 15 None None None 83319807 Common - ABC transporter, ATP-binding protein MCAP_0021 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 83319959 Common rpsS 30S ribosomal protein S19 MCAP_0692 245 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 83320027 Pathogen - hypothetical protein MCAP_0015 1 None None None 83319449 Common - hypothetical protein MCAP_0138 11 None None None 83319719 Common - holliday junction resolvase, putative MCAP_0215 104 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 83319980 Common - hypothetical protein MCAP_0421 2 None None None 83319403 Common - hypothetical protein MCAP_0634 9 COG3611 DnaB, Replication initiation/membrane attachment protein DNA replication, recombination, and repair 83320040 Pathogen - hypothetical protein MCAP_0435 1 None None None 83319981 Common ffh signal recognition particle protein MCAP_0549 246 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 83319631 Common rpmI 50S ribosomal protein L35 MCAP_0204 94 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 83319910 Common - nitroreductase family protein MCAP_0338 20 COG0778 NfnB, Nitroreductase Energy production and conversion 83319533 Common - copper homeostasis protein CutC, putative MCAP_0477 57 COG3142 CutC, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 83319374 Common - tRNA pseudouridine synthase B, putative MCAP_0326 243 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 83319944 Common - aminotransferase, class V MCAP_0469 239 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 83320005 Common - hypothetical protein MCAP_0264 85 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 83319718 Pathogen - hypothetical protein MCAP_0566 1 None None None 83319847 Pathogen - hypothetical protein MCAP_0171 1 None None None 162316930 Common proS prolyl-tRNA synthetase MCAP_0318 233 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 83319426 Common - C4-dicarboxylate anaerobic carrier superfamily MCAP_0803 38 COG1288 COG1288, Predicted membrane protein Function unknown 83319314 Common - dihydrolipoamide dehydrogenase MCAP_0427 242 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 83319298 Common ksgA dimethyladenosine transferase MCAP_0004 247 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 83319907 Common - potassium uptake protein, TrkH family, putative MCAP_0707 95 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 83319491 Common crr PTS system, glucose-specific IIA component MCAP_0234 60 COG2190 NagE, Phosphotransferase system IIA components Carbohydrate transport and metabolism 83319288 Common - adenine-specific DNA methylase, putative MCAP_0182 13 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 83319925 Common greA transcription elongation factor GreA MCAP_0251 204 COG0782 GreA, Transcription elongation factor Transcription 83319510 Common polA DNA polymerase I MCAP_0636 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 83319569 Pathogen - hypothetical protein MCAP_0176 1 None None None 83319433 Common - Single-strand binding protein family MCAP_0281 2 None None None 83319585 Common - hypothetical protein MCAP_0296 2 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 83319708 Common - peptidylarginine deiminase-related protein, putative MCAP_0652 87 COG2957 COG2957, Peptidylarginine deiminase and related enzymes Amino acid transport and metabolism 83319653 Common rplW 50S ribosomal protein L23 MCAP_0694 211 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 83319628 Common - hypothetical protein MCAP_0310 16 None None None 83319782 Common - YeeE/YedE family protein, putative MCAP_0540 19 None None None 83319655 Common metK S-adenosylmethionine synthetase MCAP_0478 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 83319678 Common pfkA Phosphofructokinase MCAP_0220 153 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 83319896 Common upp uracil phosphoribosyltransferase MCAP_0076 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 83319446 Common - 6-phosphogluconate dehydrogenase-like protein MCAP_0460 158 COG1023 Gnd, Predicted 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 83319349 Common - GTP-binding conserved hypothetical protein MCAP_0424 26 COG1161 COG1161, Predicted GTPases General function prediction only 83319661 Pathogen - lipoprotein, putative MCAP_0585 2 None None None 83319690 Common - hypothetical protein MCAP_0434 3 None None None 83319937 Common - lipoprotein (VmcE) MCAP_0629 69 None None None 83319917 Pathogen - hypothetical protein MCAP_0621 1 None None None 83319384 Common p13 UPF0122 protein, putative MCAP_0480 21 COG2739 COG2739, Uncharacterized protein conserved in bacteria Function unknown 83319765 Common - peptide methionine sulfoxide reductase msrA/msrB MCAP_0722 206 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 83319389 Common - cobalt ABC transporter, ATP-binding protein, putative MCAP_0668 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 83319727 Common - oligopeptide ABC transporter, ATP-binding protein MCAP_0163 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 83319833 Pathogen - hypothetical protein MCAP_0246 1 None None None 83319757 Common - CAAX amino terminal protease family protein, putative MCAP_0715 4 None None None 83319392 Common - 16S rRNA processing protein RimM, putative MCAP_0546 16 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 83319270 Common - hypothetical protein MCAP_0255 148 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 83319405 Common era GTP-binding protein Era MCAP_0507 230 COG1159 Era, GTPase General function prediction only 83319745 Common efp translation elongation factor P MCAP_0519 217 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 83319843 Common - ribonuclease HII, putative MCAP_0542 234 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 83319440 Common nadD putative nicotinate-nucleotide adenylyltransferase MCAP_0529 170 COG1713 COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism Coenzyme metabolism 83319326 Common - DNA repair protein RecO MCAP_0506 14 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 83319365 Common - restriction endonuclease MCAP_0050 4 None None None 83319915 Common pgk phosphoglycerate kinase MCAP_0631 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 83319962 Common tsf elongation factor Ts MCAP_0372 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 83319776 Common - hypothetical protein MCAP_0437 2 None None None 83320028 Common pth peptidyl-tRNA hydrolase MCAP_0105 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 83319695 Common - cold shock protein MCAP_0023 177 COG1278 CspC, Cold shock proteins Transcription 83319850 Common - hypothetical protein MCAP_0570 82 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 83319734 Common - hypothetical protein MCAP_0614 94 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 83319362 Common - amino acid permease family protein MCAP_0653 151 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 83319685 Common rplV 50S ribosomal protein L22 MCAP_0691 216 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 83320041 Common - chromate ion transporter (CHR) family, putative MCAP_0198 2 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 83319614 Common - helicase, RecD/TraA family, putative MCAP_0455 131 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 83319342 Common - oligopeptide ABC transporter, permease protein, putative MCAP_0161 216 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 83319901 Common - glycine cleavage system H protein, putative MCAP_0447 8 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 83319898 Common rplI 50S ribosomal protein L9 MCAP_0106 141 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 83319934 Common pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase MCAP_0808 206 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 83319787 Common rpsP 30S ribosomal protein S16 MCAP_0547 213 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 83319448 Common - hypothetical protein MCAP_0791 3 COG1737 RpiR, Transcriptional regulators Transcription 83319507 Common tpiA triosephosphate isomerase MCAP_0750 216 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 83319892 Pathogen - hypothetical protein MCAP_0168 1 None None None 83320051 Common gap glyceraldehyde-3-phosphate dehydrogenase MCAP_0632 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 83319814 Pathogen - C-5 cytosine-specific DNA methylase MCAP_0556 1 None None None 83319331 Pathogen - lipoprotein (VmcD) MCAP_0593 1 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 83319839 Common - spermidine/putrescine ABC transporter, ATP-binding protein MCAP_0202 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 83319993 Common - inorganic polyphosphate/ATP-NAD kinase, putative MCAP_0257 89 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 83319265 Common - proton/glutamate symporter family protein MCAP_0857 118 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 83319876 Common pgi glucose-6-phosphate isomerase MCAP_0465 147 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 83319724 Common trpS tryptophanyl-tRNA synthetase MCAP_0342 230 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 83320019 Common - glycosyl hydrolase, family 65 (trehalase) MCAP_0190 50 COG1554 ATH1, Trehalose and maltose hydrolases (possible phosphorylases) Carbohydrate transport and metabolism 83319826 Common - lipoate-protein ligase MCAP_0449 72 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 83319857 Common - hypothetical protein MCAP_0838 2 None None None 83319489 Common atpH ATP synthase F1, delta subunit MCAP_0081 20 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 83320003 Common prs phosphoribosylpyrophosphate synthase MCAP_0104 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 83319378 Common - RNA methyltransferase, TrmH family MCAP_0364 158 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 83319391 Pathogen - hypothetical protein MCAP_0126 1 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 83319275 Pathogen - ABC transporter, substrate-binding protein MCAP_0731 1 None None None 83319800 Pathogen - hypothetical protein MCAP_0494 1 None None None 83319458 Common - hypothetical protein MCAP_0628 63 COG1704 LemA, Uncharacterized conserved protein Function unknown 83319703 Common pmi phosphomannose isomerase type I MCAP_0475 47 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 83319721 Common - transposase (IS3 family), putative MCAP_0187 119 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 83319616 Pathogen - hypothetical protein MCAP_0764 1 None None None 83319291 Common - Cof-like hydrolase MCAP_0867 16 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 83319644 Common - hypothetical protein MCAP_0173 14 None None None 83319600 Common - MTA/SAH nucleosidase MCAP_0528 70 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 83319881 Common - hypothetical protein MCAP_0781 37 COG1481 COG1481, Uncharacterized protein conserved in bacteria Function unknown 83319467 Common - ABC transporter, permease protein MCAP_0038 109 COG4603 COG4603, ABC-type uncharacterized transport system, permease component General function prediction only 83320013 Common - dephospho-CoA kinase MCAP_0054 2 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 83319281 Common - hypothetical protein MCAP_0864 22 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 83319830 Common - ABC transporter, permease protein , putative MCAP_0656 3 None None None 83319778 Common - hypothetical protein MCAP_0738 15 None None None 83319534 Pathogen - hypothetical protein MCAP_0568 1 None None None 83319640 Common - phosphate ABC transporter, permease, putative MCAP_0484 226 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 83319524 Common arcC carbamate kinase MCAP_0651 65 COG0549 ArcC, Carbamate kinase Amino acid transport and metabolism 83319512 Pathogen - hypothetical protein MCAP_0095 1 None None None 83319312 Common hisS histidyl-tRNA synthetase MCAP_0324 242 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 83319729 Common - structural maintenance of chromosomes (SMC) superfamily protein MCAP_0495 201 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 83319864 Common - hypothetical protein MCAP_0248 2 None None None 83319414 Common - hypothetical protein MCAP_0847 55 COG2267 PldB, Lysophospholipase Lipid metabolism 83319835 Common rpmE 50S ribosomal protein L31 MCAP_0140 125 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 83319460 Common - hypothetical protein MCAP_0863 16 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 83319984 Common polC DNA polymerase III, alpha subunit, Gram-positive type MCAP_0339 216 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 83320058 Common cmk cytidylate kinase MCAP_0578 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 83319286 Common atpA2 F0F1 ATP synthase subunit alpha MCAP_0358 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 83319905 Common pdhB pyruvate dehydrogenase complex, E1 component, beta subunit MCAP_0226 173 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 83319969 Common - hypothetical protein MCAP_0382 2 None None None 83320007 Pathogen - lipoprotein, putative MCAP_0561 1 None None None 83319594 Common rpmA 50S ribosomal protein L27 MCAP_0414 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 83319602 Common - hypothetical protein MCAP_0271 14 None None None 83319469 Common - conserved hypothetical protein, TIGR00096 MCAP_0410 208 COG0313 COG0313, Predicted methyltransferases General function prediction only 83319359 Common folD methylene-tetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase MCAP_0706 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 83319680 Common - hypothetical protein MCAP_0355 4 None None None 83319438 Common - hydrolase of the HAD superfamily, putative MCAP_0365 84 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 83319323 Common ssb single-strand DNA-binding protein MCAP_0025 134 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 83319257 Pathogen - hypothetical protein MCAP_0285 1 None None None 83319888 Common - hypothetical protein MCAP_0603 2 None None None 83319571 Common - hypothetical protein MCAP_0624 2 None None None 83319763 Common - hypothetical protein MCAP_0317 2 None None None 83319407 Common dnaC replicative DNA helicase MCAP_0107 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 83319394 Common mgtE magnesium transporter MCAP_0760 177 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 83319386 Common rpsQ 30S ribosomal protein S17 MCAP_0687 217 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 83319556 Common - lipoprotein (VmcF) MCAP_0630 73 None None None 83319583 Common infB translation initiation factor IF-2 MCAP_0333 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 83319549 Common - probable deoxycytidylate deaminase MCAP_0397 92 COG2131 ComEB, Deoxycytidylate deaminase Nucleotide transport and metabolism 83319649 Common - hypothetical protein MCAP_0850 4 None None None 83319983 Common - adenine-specific DNA methylase, putative MCAP_0048 18 COG3392 COG3392, Adenine-specific DNA methylase DNA replication, recombination, and repair 83319498 Common trmD tRNA (guanine-N1)-methyltransferase MCAP_0545 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 83319552 Common rplT 50S ribosomal protein L20 MCAP_0203 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 83319559 Common ptsI phosphoenolpyruvate-protein phosphotransferase MCAP_0233 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 83319657 Common - hypothetical protein MCAP_0411 2 None None None 83319770 Common - PTS system, IIA component, putative MCAP_0591 36 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 83319781 Common - HDIG/HD/KH domain protein MCAP_0550 76 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 83319461 Common - hypothetical protein MCAP_0391 11 COG1799 COG1799, Uncharacterized protein conserved in bacteria Function unknown 83319801 Common lgt2 prolipoprotein diacylglyceryl transferase MCAP_0780 103 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 83319676 Common - oligopeptide ABC transporter, permease protein MCAP_0117 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 83319829 Common - hypothetical protein MCAP_0565 27 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 83319567 Common - hypothetical protein MCAP_0865 2 None None None 83319922 Common - ABC transporter, ATP-binding/permease protein, putative MCAP_0538 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 83320043 Pathogen - hypothetical protein MCAP_0569 1 None None None 83319311 Common - oligopeptide ABC transporter, ATP-binding protein MCAP_0120 249 COG1124 DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 83319862 Common glyS glycyl-tRNA synthetase MCAP_0505 91 COG0423 GRS1, Glycyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 83319705 Pathogen - lipoprotein, putative MCAP_0433 1 None None None 83319970 Common - hypothetical protein MCAP_0236 45 COG3412 COG3412, Uncharacterized protein conserved in bacteria Function unknown 83319478 Common - ABC transporter, ATP-binding protein MCAP_0797 244 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 83319736 Common rplF 50S ribosomal protein L6 MCAP_0681 242 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 83319509 Pathogen - hypothetical protein MCAP_0005 1 COG1340 COG1340, Uncharacterized archaeal coiled-coil protein Function unknown 83319932 Common - hypothetical protein MCAP_0238 2 None None None 83319739 Common argS arginyl-tRNA synthetase MCAP_0376 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 83319816 Common - lipoprotein, putative MCAP_0268 15 None None None 83319318 Common - hypothetical protein MCAP_0633 39 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 83319955 Common - hypothetical protein MCAP_0498 7 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 83319367 Common - hypothetical protein MCAP_0286 3 None None None 83319798 Common rpsO 30S ribosomal protein S15 MCAP_0330 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 83319296 Pathogen - lipoprotein, putative (LppA) MCAP_0033 1 None None None 83319340 Common - transporter protein, putative MCAP_0814 7 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 83320029 Common - isoglycosyl hydrolases family 31, putative MCAP_0156 81 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 83319564 Common rplP 50S ribosomal protein L16 MCAP_0689 217 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 83319351 Common ruvA Holliday junction DNA helicase ruvA, putative MCAP_0429 69 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 83320026 Common atpC ATP synthase F1, epsilon subunit MCAP_0085 7 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 83319913 Pathogen - hypothetical protein MCAP_0185 1 None None None 83319338 Common rbfA ribosome-binding factor A MCAP_0325 3 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 83319596 Pathogen - lipoprotein, putative (LppA family) MCAP_0034 1 None None None 83319692 Common asnC asparaginyl-tRNA synthetase MCAP_0824 234 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 83319456 Common - hypothetical protein MCAP_0332 2 None None None 83319483 Common pta phosphate acetyltransferase MCAP_0229 157 COG0280 Pta, Phosphotransacetylase Energy production and conversion 83319832 Common rpsH 30S ribosomal protein S8 MCAP_0682 227 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 83320015 Common - endoribonuclease L-PSP, putative MCAP_0734 181 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 83319431 Common - lipoprotein, putative MCAP_0470 2 None None None 83319273 Common - adenine-specific DNA methylase, putative MCAP_0297 17 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 83320033 Common - hypothetical protein MCAP_0167 7 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 83319324 Common - holo-(acyl-carrier-protein) synthase, putative MCAP_0400 29 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 83319263 Pathogen - lipoprotein, putative MCAP_0346 2 None None None 83319679 Common - hypothetical protein MCAP_0493 21 COG3600 GepA, Uncharacterized phage-associated protein Function unknown 83319828 Common - hypothetical protein MCAP_0018 2 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 83319577 Common rplE 50S ribosomal protein L5 MCAP_0684 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 83319618 Common pdhD dihydrolipoamide dehydrogenase MCAP_0228 240 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 83319642 Common lgt1 prolipoprotein diacylglyceryl transferase MCAP_0778 96 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 83319995 Common - conserved hypothetical protein, TIGR00043 MCAP_0508 45 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 83320060 Common rplX 50S ribosomal protein L24 MCAP_0685 203 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 83319856 Pathogen - hypothetical protein MCAP_0121 1 None None None 83319874 Common gtsC glycerol ABC transporter, permease MCAP_0452 66 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 83319820 Pathogen - hypothetical protein MCAP_0295 1 None None None 83319304 Pathogen - hypothetical protein MCAP_0043 1 None None None 83319496 Common pepO endopeptidase O MCAP_0466 63 COG3590 PepO, Predicted metalloendopeptidase Posttranslational modification, protein turnover, chaperones 83319590 Common - degV family protein MCAP_0643 19 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 83319879 Pathogen - lipoprotein, putative MCAP_0723 1 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 83319303 Pathogen - hypothetical protein MCAP_0784 1 None None None 83320061 Common hupA DNA-binding protein HU 1 MCAP_0575 190 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 83319851 Common - hypothetical protein MCAP_0399 3 None None None 83319933 Common rpmB 50S ribosomal protein L28 MCAP_0488 28 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 83319821 Common - hypothetical protein MCAP_0184 96 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 83319321 Common - hypothetical protein MCAP_0291 15 None None None 83319660 Common - membrane bound ATPase, putative MCAP_0179 51 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 83319920 Common - ATP-dependent Clp protease, ATP-binding subunit ClpB, putative MCAP_0366 219 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 83320038 Common - hypothetical protein MCAP_0413 4 COG2868 COG2868, Predicted ribosomal protein Translation, ribosomal structure and biogenesis 83319267 Common - hypothetical protein MCAP_0148 6 None None None 83319753 Common - hypothetical protein MCAP_0718 2 COG1714 COG1714, Predicted membrane protein/domain Function unknown 83319854 Pathogen - hypothetical protein MCAP_0013 1 COG1737 RpiR, Transcriptional regulators Transcription 83319255 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA MCAP_0856 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 83319453 Common - RNA methyltransferase, TrmH family MCAP_0462 179 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 83319793 Common rplL 50S ribosomal protein L7/L12 MCAP_0068 213 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 83319503 Common - phosphonate ABC transporter, phosphonate-binding protein, putative MCAP_0825 3 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 83319996 Pathogen - hypothetical protein MCAP_0724 1 None None None 83319284 Common - lipoprotein, putative MCAP_0758 8 COG5279 CYK3, Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain Cell division and chromosome partitioning 83319278 Common - NH3-dependent NAD+ synthetase MCAP_0531 188 COG0171 NadE, NAD synthase Coenzyme metabolism 83319966 Common - hypothetical protein MCAP_0288 14 None None None 83319803 Common udk uridine kinase MCAP_0422 75 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 83319941 Common - riboflavin kinase (flavokinase) domain protein MCAP_0327 127 COG0196 RibF, FAD synthase Coenzyme metabolism 83319711 Common - ABC transporter, ATP-binding protein MCAP_0655 248 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 83319486 Common trmB tRNA (guanine-N(7)-)-methyltransferase MCAP_0761 166 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 83319260 Common - ribosomal large subunit pseudouridine synthase, RluA family MCAP_0395 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 83319350 Common - hypothetical protein MCAP_0360 2 None None None 83319408 Common - hypothetical protein MCAP_0293 15 None None None 83319416 Common atpD2 F0F1 ATP synthase subunit beta MCAP_0359 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 83319973 Common - primase-related protein MCAP_0003 21 COG1658 COG1658, Small primase-like proteins (Toprim domain) DNA replication, recombination, and repair 83319368 Common - DJ-1 family protein MCAP_0510 150 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 83319443 Common - hypothetical protein MCAP_0147 12 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 83319400 Common - lipoprotein, putative MCAP_0242 52 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 83319958 Common rplR 50S ribosomal protein L18 MCAP_0680 216 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 83319951 Common - methionyl/phenylalanyl tRNA synthetase domain protein MCAP_0641 179 COG0073 ARC1, EMAP domain General function prediction only 83319714 Common - hypothetical protein MCAP_0866 7 COG0510 CotS, Predicted choline kinase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 83319991 Common - transcriptional regulator, gntR family MCAP_0192 19 COG2188 PhnF, Transcriptional regulators Transcription 83319699 Common - multiple sugar ABC transporter, ATP-binding protein MCAP_0189 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 83319295 Common - NADH oxidase MCAP_0223 243 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 83319730 Common atpD1 F0F1 ATP synthase subunit beta MCAP_0084 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 83319423 Common rpoC DNA-directed RNA polymerase beta' subunit MCAP_0071 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 83319536 Common - hypothetical protein MCAP_0763 15 None None None 83320023 Pathogen - lipoprotein, putative MCAP_0273 1 None None None 83319930 Common rpsG 30S ribosomal protein S7 MCAP_0152 249 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 83319772 Common - hypothetical protein MCAP_0736 15 None None None 83319929 Common - phosphoglucomutase/phosphomannomutase MCAP_0756 240 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 83319371 Common - hypothetical protein MCAP_0284 2 None None None 83319346 Common - GTPase family protein MCAP_0543 86 COG1161 COG1161, Predicted GTPases General function prediction only 83319884 Common - hypothetical protein MCAP_0622 15 None None None 83319578 Common - oligopeptide ABC transporter, ATP-binding protein MCAP_0164 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 83319611 Common - DNA polymerase III, delta prime subunit MCAP_0011 76 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 83319307 Common - hypothetical protein MCAP_0534 2 None None None 83319607 Common - hypothetical protein MCAP_0361 3 None None None 83319554 Common - oligopeptide ABC transporter, ATP-binding protein MCAP_0119 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 83319436 Common - serine/threonine protein kinase, putative MCAP_0262 141 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 83319575 Common - PAP2 superfamily domain membrane protein MCAP_0214 3 None None None 83319588 Common - ribonuclease III MCAP_0492 215 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 83319493 Common rpsT 30S ribosomal protein S20 MCAP_0818 137 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 83319648 Common - hypothetical protein MCAP_0240 38 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 83319650 Common - N utilization substance protein B (nusB), putative MCAP_0058 42 COG0781 NusB, Transcription termination factor Transcription 83319673 Common - hypothetical protein MCAP_0276 15 None None None 83319747 Common - recombination protein U, putative MCAP_0573 16 COG3331 PrfA, Penicillin-binding protein-related factor A, putative recombinase General function prediction only 83319646 Common - ImpB/MucB/SamB family protein MCAP_0423 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 83319397 Common rpmF 50S ribosomal protein L32 MCAP_0386 45 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 83319381 Common - pyridine nucleotide-disulphide oxidoreductase MCAP_0858 242 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 83319550 Common - transcriptional regulator, DeoR family MCAP_0617 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 83319560 Common - Uncharacterised membrane protein, UPF0154 family MCAP_0609 6 COG3763 COG3763, Uncharacterized protein conserved in bacteria Function unknown 83319463 Common - hypothetical protein MCAP_0521 18 None None None 83319728 Common rpoA DNA-directed RNA polymerase subunit alpha MCAP_0670 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 83319545 Common adk adenylate kinase MCAP_0676 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 83319797 Common - triacylglycerol lipase, putative MCAP_0446 24 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 83319926 Pathogen - hypothetical protein MCAP_0657 1 None None None 83319539 Common - lipoprotein, putative MCAP_0770 16 None None None 83319659 Common tdk thymidine kinase MCAP_0143 88 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 83319886 Common - Fic protein family MCAP_0344 32 COG2184 Fic, Protein involved in cell division Cell division and chromosome partitioning 83319428 Pathogen - hypothetical protein MCAP_0280 1 None None None 83319806 Common nrdF ribonucleotide-diphosphate reductase subunit beta MCAP_0099 57 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 83319985 Common ung uracil-DNA glycosylase MCAP_0474 129 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 83319849 Common lspA signal peptidase (SPase) II MCAP_0394 40 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 83319421 Common - lipoprotein, putative MCAP_0212 14 None None None 83319768 Common - 5-formyltetrahydrofolate cyclo-ligase subfamily MCAP_0467 100 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 83319528 Common eno enolase MCAP_0213 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 83319665 Common - hypothetical protein MCAP_0052 14 None None None 83319758 Common - hypothetical protein MCAP_0385 2 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 83319877 Common fruA PTS system, fructose-specific family, IIABC components MCAP_0853 132 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 83319354 Common - hypothetical protein MCAP_0527 18 COG1428 COG1428, Deoxynucleoside kinases Nucleotide transport and metabolism 83319700 Common dnaA chromosomal replication initiator protein DnaA MCAP_0001 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 83319541 Common - DHH phosphoesterase family protein, putative MCAP_0142 74 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 83319943 Common - dipeptidase, putative MCAP_0420 157 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 83319707 Common - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative MCAP_0402 130 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 83319411 Pathogen - hypothetical protein MCAP_0563 1 None None None 83319603 Common mraW S-adenosyl-methyltransferase MraW MCAP_0388 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 83319908 Common - PTS system, IIBC components, putative MCAP_0618 42 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 83319638 Common obgE GTPase ObgE MCAP_0532 249 COG0536 Obg, Predicted GTPase General function prediction only 83319317 Common - ribosomal large subunit pseudouridine synthase B MCAP_0600 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 83319451 Common - PTS system glucose-specific IIBC component MCAP_0844 49 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 83319860 Pathogen - hypothetical protein MCAP_0592 1 None None None 83319471 Common pepA1 cytosol aminopeptidase MCAP_0157 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 83319514 Common - hypothetical protein MCAP_0127 4 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 83319508 Common - hypothetical protein MCAP_0664 5 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 83319310 Common - hypothetical protein MCAP_0855 2 None None None 83319902 Common - hypothetical protein MCAP_0737 15 None None None 83320056 Common gpmI phosphoglyceromutase MCAP_0752 126 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 83319751 Pathogen - hypothetical protein MCAP_0265 1 None None None 83319344 Common - NADH:flavin oxidoreductase / NADH oxidase family MCAP_0450 177 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 83319605 Pathogen - lipoprotein (VmcB) MCAP_0595 1 COG4913 COG4913, Uncharacterized protein conserved in bacteria Function unknown 83320010 Common deoA pyrimidine-nucleoside phosphorylase MCAP_0757 119 COG0213 DeoA, Thymidine phosphorylase Nucleotide transport and metabolism 83319282 Common - dihydroxyacetone kinase 2 domain protein MCAP_0490 50 COG1461 COG1461, Predicted kinase related to dihydroxyacetone kinase General function prediction only 83319894 Common glpK glycerol kinase MCAP_0218 178 COG0554 GlpK, Glycerol kinase Energy production and conversion 83320045 Common - glycosyl transferase, group 2 family protein MCAP_0719 16 None None None 83319998 Common - hypothetical protein MCAP_0658 2 None None None 83319376 Common recM DNA repair protein RecM MCAP_0009 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 83319713 Common - transposase (IS3 family), putative MCAP_0315 115 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 83319817 Common - hypothetical protein MCAP_0502 32 COG2384 COG2384, Predicted SAM-dependent methyltransferase General function prediction only 83319795 Common typA GTP-binding protein TypA/BipA MCAP_0210 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 83320059 Pathogen - hypothetical protein MCAP_0554 1 None None None 83319841 Common - hypothetical protein MCAP_0776 8 COG4720 COG4720, Predicted membrane protein Function unknown 83319276 Common - hemolysin A MCAP_0055 131 COG1189 COG1189, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 83319332 Common leuS leucyl-tRNA synthetase MCAP_0659 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 83319488 Common pheT phenylalanyl-tRNA synthetase, beta subunit MCAP_0384 215 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 83320063 Common - hypothetical protein MCAP_0149 2 None None None 83319613 Common rpsK 30S ribosomal protein S11 MCAP_0671 248 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 83319791 Pathogen - hypothetical protein MCAP_0290 1 None None None 162316929 Common rpsU 30S ribosomal protein S21 MCAP_0430 2 None None None 83319592 Common - hypothetical protein MCAP_0557 15 None None None 83320031 Common - hypothetical protein MCAP_0468 3 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 83319823 Pathogen - hypothetical protein MCAP_0699 1 None None None 83319372 Common rplB 50S ribosomal protein L2 MCAP_0693 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 83319293 Common - ATP-dependent RNA helicase, DEAD-DEAH box family MCAP_0500 235 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 83319328 Pathogen - hypothetical protein MCAP_0088 1 None None None 83319301 Common - cobalt ABC transporter, ATP-binding protein, putative MCAP_0667 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 83319975 Common hrcA heat-inducible transcription repressor HrcA MCAP_0367 150 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 83320017 Pathogen - hypothetical protein MCAP_0627 1 None None None 83319810 Common - hypothetical protein MCAP_0160 2 COG4956 COG4956, Integral membrane protein (PIN domain superfamily) General function prediction only 83320012 Common - oligopeptide ABC transporter, permease protein, putative MCAP_0162 197 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 83319722 Common trmE tRNA modification GTPase TrmE MCAP_0819 225 COG0486 ThdF, Predicted GTPase General function prediction only 83319919 Pathogen - hypothetical protein MCAP_0306 1 None None None 83319882 Common - hypothetical protein MCAP_0300 16 None None None 83320054 Pathogen - lipoprotein, putative MCAP_0524 2 None None None 83319511 Common secA preprotein translocase subunit SecA MCAP_0045 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 83319891 Common lon ATP-dependent protease La MCAP_0516 211 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 83319732 Pathogen - lipoprotein (VmcA) MCAP_0596 1 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 83319784 Common pyrG CTP synthetase MCAP_0133 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 83319615 Common dnaE DNA-directed DNA polymerase III (polc) MCAP_0637 217 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 83319418 Common nrdE ribonucleotide-diphosphate reductase subunit alpha MCAP_0101 222 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 83319505 Common - acyl carrier protein phosphodiesterase, putative MCAP_0022 71 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 83319305 Common - hypothetical protein MCAP_0249 2 None None None 83319906 Common - hypothetical protein MCAP_0122 170 COG0344 COG0344, Predicted membrane protein Function unknown 83319530 Common xseA exodeoxyribonuclease VII, large subunit MCAP_0057 206 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 83319518 Common - glycerol uptake facilitator protein MCAP_0217 104 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 83319735 Common - hypothetical protein MCAP_0620 10 None None None 83319743 Common gidB methyltransferase gidB MCAP_0807 205 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 83319694 Common - magnesium-transporting ATPase, E1-E2 family, putative MCAP_0812 233 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 83319609 Common - hypothetical protein MCAP_0806 2 COG4481 COG4481, Uncharacterized protein conserved in bacteria Function unknown 83319441 Common - oligopeptide ABC transporter, oligopeptide-binding protein, putative MCAP_0165 6 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 83319681 Pathogen - lipoprotein, putative MCAP_0350 2 None None None 83319327 Common rpsF 30S ribosomal protein S6 MCAP_0024 62 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 83319599 Pathogen - hypothetical protein MCAP_0842 1 None None None 83319845 Common - hypothetical protein MCAP_0275 10 None None None 83319688 Pathogen - hypothetical protein MCAP_0840 1 COG2364 COG2364, Predicted membrane protein Function unknown 83319988 Common rpsD 30S ribosomal protein S4 MCAP_0237 245 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 83319399 Common - lipoprotein, putative MCAP_0583 8 None None None 83319402 Common atpB F0F1 ATP synthase subunit A MCAP_0078 10 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 83319702 Common ilvA threonine dehydratase MCAP_0125 231 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 83320021 Common - ABC transporter, permease protein , putative MCAP_0586 2 None None None 83319956 Pathogen - hypothetical protein MCAP_0349 2 None None None 83319766 Pathogen - hypothetical protein MCAP_0343 3 None None None 83319716 Common hpt1 hypoxanthine phosphoribosyltransferase MCAP_0216 154 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 83319939 Common - hypothetical protein MCAP_0541 128 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 83319838 Common - ABC transporter, ATP-binding protein MCAP_0037 249 COG3845 COG3845, ABC-type uncharacterized transport systems, ATPase components General function prediction only 83319868 Common rpoD RNA polymerase sigma factor RpoD MCAP_0503 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 83319543 Common - hypothetical protein MCAP_0448 6 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 83319740 Common - hypothetical protein MCAP_0289 15 None None None 83319808 Common - hypothetical protein MCAP_0753 23 None None None 83319254 Common - hypothetical protein MCAP_0574 2 None None None 83319789 Common - hypothetical protein MCAP_0247 2 None None None 83319663 Common gtsA glycerol ABC transporter, ATP-binding protein MCAP_0454 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 83319586 Common asnA asparagine synthetase AsnA MCAP_0817 31 COG2502 AsnA, Asparagine synthetase A Amino acid transport and metabolism 83319625 Common gyrA DNA gyrase, A subunit MCAP_0040 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 83319308 Pathogen - hypothetical protein MCAP_0356 2 None None None 83319652 Common - Single-strand binding protein family MCAP_0539 2 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 83319749 Common hslO 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33) MCAP_0020 45 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 83319671 Common secG preprotein translocase subunit SecG MCAP_0098 2 None None None 83319620 Common - ribulose-phosphate 3-epimerase, putative MCAP_0589 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 83319532 Pathogen - hypothetical protein MCAP_0762 1 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 83320001 Common metG methionyl-tRNA synthetase MCAP_0035 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 83319636 Common - hypothetical protein MCAP_0292 15 None None None 83319473 Common - RNA methyltransferase, TrmH family, group 3 MCAP_0111 213 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 83319697 Pathogen - hypothetical protein MCAP_0786 1 COG2453 CDC14, Predicted protein-tyrosine phosphatase Signal transduction mechanisms 83319979 Pathogen - lipoprotein, putative (LppB) MCAP_0451 1 None None None 83319683 Common purA adenylosuccinate synthetase MCAP_0767 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 83319948 Common - zinc metalloprotease, putative MCAP_0804 132 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 83319516 Common - hypothetical protein MCAP_0279 10 None None None 83319960 Common hpt2 hypoxanthine phosphoribosyltransferase MCAP_0765 150 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 83319465 Common rpsB 30S ribosomal protein S2 MCAP_0371 248 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 83319775 Common rpsC 30S ribosomal protein S3 MCAP_0690 217 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 83319871 Common def polypeptide deformylase MCAP_0206 115 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 83319987 Common - PTS system, mannitol-specific IIBC component MCAP_0458 41 COG2213 MtlA, Phosphotransferase system, mannitol-specific IIBC component Carbohydrate transport and metabolism 83319413 Pathogen - lipoprotein, putative MCAP_0605 1 None None None 83319522 Common dnaJ chaperone protein dnaJ MCAP_0370 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 83319521 Common - N-6 adenine-specific DNA methylases, putative MCAP_0012 106 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 83319334 Common trxB thioredoxin reductase MCAP_0779 249 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 83319383 Pathogen - hypothetical protein MCAP_0486 1 None None None 83319357 Common rplJ 50S ribosomal protein L10 MCAP_0067 207 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 83319434 Common lepA GTP-binding protein LepA MCAP_0321 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 83319709 Common - hypothetical protein MCAP_0501 27 COG0327 COG0327, Uncharacterized conserved protein Function unknown 83319914 Common rpmG 50S ribosomal protein L33 MCAP_0112 52 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 83319343 Common - oligopeptide ABC transporter, oligopeptide-binding protein, putative MCAP_0116 9 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 83319664 Common - conserved hypothetical cytosolic protein MCAP_0463 9 COG4508 COG4508, Uncharacterized protein conserved in bacteria Function unknown 83319462 Common - lipoprotein, putative MCAP_0721 16 None None None 83319788 Pathogen - hypothetical protein MCAP_0530 1 None None None 83319889 Common - hypothetical protein MCAP_0608 10 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 83319957 Pathogen - lipoprotein, putative MCAP_0584 1 None None None 83319447 Common - metallo-beta-lactamase superfamily protein MCAP_0623 156 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 83319954 Common - dihydroxyacetone kinase family protein MCAP_0235 78 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 83319506 Pathogen - lipoprotein, putative MCAP_0059 2 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 83319963 Common - spermidine/putrescine ABC transporter, permease protein MCAP_0201 202 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 83319900 Pathogen - hypothetical protein MCAP_0794 2 None None None 83319737 Common - conserved hypothetical cytosolic protein MCAP_0548 141 COG1576 COG1576, Uncharacterized conserved protein Function unknown 83320052 Pathogen - lipoprotein, putative MCAP_0525 1 None None None 83319813 Common - hypothetical protein MCAP_0046 130 COG1739 COG1739, Uncharacterized conserved protein Function unknown 83319696 Common - 5-3 exonuclease family protein MCAP_0047 216 COG0258 Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair 83319880 Common - lipoprotein, putative MCAP_0514 10 COG5279 CYK3, Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain Cell division and chromosome partitioning 83320047 Common dus tRNA-dihydrouridine synthase MCAP_0837 205 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 83319330 Common - cardiolipin synthetase, putative MCAP_0150 139 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 83319475 Common - hypothetical protein MCAP_0282 167 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 83319686 Common dnaK chaperone protein dnaK MCAP_0369 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 83320042 Common - hypothetical protein MCAP_0820 8 None None None 83319339 Common - glycerol-3-phosphate dehydrogenase, putative MCAP_0219 110 COG0579 COG0579, Predicted dehydrogenase General function prediction only 83320020 Common - alkylphosphonate ABC transporter, permease protein MCAP_0827 100 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 83319364 Pathogen - lipoprotein, putative MCAP_0431 1 None None None 83319897 Common - cobalt ABC transporter, permease protein MCAP_0666 75 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 83319924 Pathogen - hypothetical protein MCAP_0571 1 None None None 83319643 Pathogen - lipoprotein, putative MCAP_0661 1 None None None 83319565 Common fusA elongation factor G MCAP_0153 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 83319325 Pathogen - hypothetical protein MCAP_0351 2 None None None 83320034 Common - riboflavin kinase / FAD synthetase family protein MCAP_0061 157 COG0196 RibF, FAD synthase Coenzyme metabolism 83319264 Common dam DNA adenine methylase MCAP_0049 81 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 83319968 Common - hypothetical protein MCAP_0790 25 COG5293 COG5293, Uncharacterized protein conserved in bacteria Function unknown 83320039 Common gatA aspartyl/glutamyl-tRNA amidotransferase subunit A MCAP_0710 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 83320014 Pathogen - hypothetical protein MCAP_0401 1 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 83319825 Common pcrA ATP-dependent DNA helicase pcrA MCAP_0717 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 83319855 Common - oligoendopeptidase F MCAP_0193 84 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 83319992 Common - hypothetical protein MCAP_0810 2 None None None 83320057 Pathogen - hypothetical protein MCAP_0178 1 None None None 83320009 Pathogen - hypothetical protein MCAP_0440 1 None None None 83319875 Common - ABC transporter, ATP-binding/permease protein, putative MCAP_0537 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 83319704 Common - hypothetical protein MCAP_0253 2 None None None 83320065 Common - hypothetical protein MCAP_0314 10 None None None 83319482 Pathogen - hypothetical protein MCAP_0558 1 None None None 83319819 Common engD translation-associated GTPase MCAP_0805 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 83319274 Common tyrS tyrosyl-tRNA synthetase MCAP_0639 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 83319390 Common - phosphonate ABC transporter, ATP-binding protein MCAP_0826 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 83319720 Common - hypothetical protein MCAP_0194 2 None None None 83319457 Common - DNA-directed RNA polymerase, delta subunit, putative MCAP_0132 2 COG3343 RpoE, DNA-directed RNA polymerase, delta subunit Transcription 162316927 Common nagB glucosamine-6-phosphate deaminase MCAP_0128 80 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 83319361 Common - hypothetical protein MCAP_0854 2 None None None 83319617 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase MCAP_0523 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 83319358 Common mgtA magnesium-translocating P-type ATPase MCAP_0087 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 83319468 Common rpsN 30S ribosomal protein S14 MCAP_0683 163 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 83319994 Common - hypothetical protein MCAP_0772 22 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 83319548 Common hup DNA-binding protein HU MCAP_0813 110 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 83319634 Common - lipoprotein, putative MCAP_0796 32 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 83320006 Common - hypothetical protein MCAP_0053 2 None None None 83319947 Common uvrB excinuclease ABC subunit B MCAP_0773 228 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 83319689 Common - hypothetical protein MCAP_0337 11 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 83319622 Common - hypothetical protein MCAP_0109 3 None None None 83319523 Common - hypothetical protein MCAP_0108 2 None None None 83319313 Common - conserved hypothetical cytosolic protein MCAP_0417 15 COG2731 EbgC, Beta-galactosidase, beta subunit Carbohydrate transport and metabolism 83319691 Common - hypothetical protein MCAP_0134 15 None None None 83319867 Common - hypothetical protein MCAP_0789 6 None None None 83319831 Common - tRNA (uracil-5-)-methyltransferase Gid MCAP_0613 132 COG1206 Gid, NAD(FAD)-utilizing enzyme possibly involved in translation Translation, ribosomal structure and biogenesis 83319742 Common - hypothetical protein MCAP_0073 6 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 83319289 Common - hypothetical protein MCAP_0580 2 None None None 83319911 Pathogen - hypothetical protein MCAP_0802 2 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 83319654 Common - PTS system, IIBC component, putative MCAP_0155 49 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 83319754 Common - metalloendopeptidase, putative MCAP_0267 11 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 83319377 Common - Oxidoreductase, short chain dehydrogenase/reductase family MCAP_0256 238 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 83319904 Pathogen - hypothetical protein MCAP_0086 1 None None None 83319989 Common - hypothetical protein MCAP_0860 105 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 83319271 Common infA translation initiation factor IF-1 MCAP_0674 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 83319348 Pathogen - hypothetical protein MCAP_0441 1 None None None 83319558 Common - hypothetical protein MCAP_0862 65 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 83319656 Common arcA arginine deiminase MCAP_0089 60 COG2235 ArcA, Arginine deiminase Amino acid transport and metabolism 83319677 Common secY preprotein translocase subunit SecY MCAP_0677 216 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 83319662 Pathogen - lipoprotein (VmcC) MCAP_0594 1 None None None 83319809 Common - rRNA methyltransferase RsmB (sun protein), putative MCAP_0209 211 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 83319812 Common - transcriptional regulator of the fructose operon, DeoR family MCAP_0851 107 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 83319492 Pathogen - hypothetical protein MCAP_0815 1 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 83319982 Common - methyltransferase, putative MCAP_0207 21 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 83319584 Common - hypothetical protein MCAP_0841 2 COG4720 COG4720, Predicted membrane protein Function unknown 83319497 Pathogen - hypothetical protein MCAP_0443 1 None None None 83319572 Common rpmH 50S ribosomal protein L34 MCAP_0870 193 COG0230 RpmH, Ribosomal protein L34 Translation, ribosomal structure and biogenesis 83319385 Common - nicotinate phosphoribosyltransferase MCAP_0640 106 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 83319393 Pathogen - hypothetical protein MCAP_0800 2 None None None 83319568 Common - hypothetical protein MCAP_0241 27 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 83319404 Common nagB1 glucosamine-6-phosphate isomerase MCAP_0749 84 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 83319764 Common uvrC excinuclease ABC, C subunit MCAP_0252 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 83319846 Pathogen - hypothetical protein MCAP_0615 1 None None None 83319553 Common - aminotransferase, classes I and II, putative MCAP_0733 219 COG1168 MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Amino acid transport and metabolism 83319504 Common - fructose/tagatose bisphosphate aldolase, class II MCAP_0616 177 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 83319425 Common smpB SsrA-binding protein MCAP_0096 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 83319627 Common - Cof-like hydrolase MCAP_0732 123 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 83319815 Common - RelA/SpoT family protein MCAP_0496 206 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 83319669 Common grpE co-chaperone GrpE MCAP_0368 174 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 83319319 Common gatC glutamyl-tRNA(Gln) amidotransferase, C subunit, MCAP_0711 22 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 83319566 Common - Oxidoreductase, short chain dehydrogenase/reductase family MCAP_0250 238 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 83320025 Common rpsJ 30S ribosomal protein S10 MCAP_0697 246 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 83319738 Common - glycerophosphoryl diester phosphodiesterase family MCAP_0139 39 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 83319269 Pathogen - lipoprotein, putative MCAP_0799 2 None None None 83319470 Common - lipoprotein, putative MCAP_0269 15 None None None 83319420 Common - hypothetical protein MCAP_0822 31 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 83319899 Common alaS alanyl-tRNA synthetase MCAP_0159 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 83319964 Common - hypothetical protein MCAP_0381 12 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 83319297 Common - HPr kinase/phosphorylase MCAP_0777 73 COG1493 HprK, Serine kinase of the HPr protein, regulates carbohydrate metabolism Signal transduction mechanisms 83319515 Pathogen - hypothetical protein MCAP_0303 1 None None None 83319501 Common - lipoprotein, putative MCAP_0843 9 COG5279 CYK3, Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain Cell division and chromosome partitioning 83319563 Common rpsI 30S ribosomal protein S9 MCAP_0662 249 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 83319464 Common - ROK family protein MCAP_0418 110 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 83319341 Common - hypothetical protein MCAP_0625 2 None None None 83319777 Common - Rnase R (VacB) and RNase II family 3'-5' exoribonucleases MCAP_0097 194 COG0557 VacB, Exoribonuclease R Transcription 83319445 Pathogen - hypothetical protein MCAP_0181 1 None None None 83319912 Common tkt transketolase MCAP_0610 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 83319840 Common - phosphosugar-binding transcriptional regulator, RpiR family, putative MCAP_0031 37 COG1737 RpiR, Transcriptional regulators Transcription 83319363 Pathogen - hypothetical protein MCAP_0298 1 None None None 83319887 Common - deoxyribonuclease, TatD family MCAP_0768 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 83319952 Common - hypothetical protein MCAP_0522 2 None None None 83319799 Common rplO 50S ribosomal protein L15 MCAP_0678 216 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 83319786 Common - phosphate transport system regulatory protein PhoU, putative MCAP_0482 119 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 83319322 Common - hypothetical protein MCAP_0511 3 COG3127 COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Secondary metabolites biosynthesis, transport, and catabolism 83319601 Common ligA DNA ligase, NAD-dependent MCAP_0712 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 83319290 Common - 1-phosphofructokinase MCAP_0619 95 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 83319935 Common coaD pantetheine-phosphate adenylyltransferase MCAP_0232 203 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 83319484 Common - hypothetical protein MCAP_0115 5 None None None 83320049 Common - hypothetical protein MCAP_0642 37 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 83319432 Common - PTS system, IIBC component, putative MCAP_0783 49 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 83320055 Common - triacylglycerol lipase MCAP_0445 9 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 83319259 Pathogen - lipoprotein, putative MCAP_0648 1 None None None 83319637 Common rplA 50S ribosomal protein L1 MCAP_0066 246 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 83319279 Common - hydrolase, haloacid dehalogenase-like family MCAP_0823 105 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 83320008 Common - hypothetical protein MCAP_0604 3 None None None 83319455 Common trxA thioredoxin MCAP_0835 233 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 83319759 Common - N-acetylmannosamine-6-phosphate 2-epimerase MCAP_0419 43 COG3010 NanE, Putative N-acetylmannosamine-6-phosphate epimerase Carbohydrate transport and metabolism 83319439 Common - UTP-glucose-1-phosphate uridylyltransferase MCAP_0064 229 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 83319942 Common ptsH phosphocarrier protein hpr MCAP_0716 130 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 83319337 Pathogen - e3 binding domain protein MCAP_0304 1 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 83319495 Common - hypothetical protein MCAP_0713 3 None None None 83320044 Common rplS 50S ribosomal protein L19 MCAP_0544 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 83319610 Common - hypothetical protein MCAP_0499 3 COG1284 COG1284, Uncharacterized conserved protein Function unknown 83319262 Common - beta-lactamase, putative MCAP_0093 67 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 83320036 Common - hypothetical protein MCAP_0305 15 None None None 83319827 Common - hypothetical protein MCAP_0396 2 None None None 83319287 Common purB adenylosuccinate lyase MCAP_0766 237 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 83319761 Common - hydrolase, haloacid dehalogenase-like family, putative MCAP_0834 84 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 83319928 Common - PTS system, mannitol-specific IIA component, putative MCAP_0030 6 COG4668 MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain Carbohydrate transport and metabolism 83319865 Common - hypothetical protein MCAP_0299 9 None None None 83319579 Common - PTS system, mannitol-specific IIA component MCAP_0459 57 COG4668 MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain Carbohydrate transport and metabolism 83319639 Pathogen - lipoprotein, putative MCAP_0172 1 None None None 83319726 Common thrS threonyl-tRNA synthetase MCAP_0222 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 83319834 Common - ribose 5-phosphate isomerase B, putative MCAP_0074 128 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 83319873 Common fba fructose-1,6-bisphosphate aldolase, class II MCAP_0136 179 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 83319437 Common apt adenine phosphoribosyltransferase MCAP_0497 189 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 83319280 Common - hypothetical protein MCAP_0389 6 None None None 83319771 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B MCAP_0709 213 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 83319535 Common argF putrescine carbamoyltransferase MCAP_0654 240 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 83319379 Common - hypothetical protein MCAP_0533 2 None None None 83319641 Common nusA transcription elongation factor NusA MCAP_0336 216 COG0195 NusA, Transcription elongation factor Transcription 83319629 Common - hypothetical protein MCAP_0186 17 None None None 83319388 Common pyrH uridylate kinase MCAP_0374 236 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 83319450 Common - putative inner membrane protein translocase component YidC MCAP_0868 4 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 83319526 Common - hypothetical protein MCAP_0307 81 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 83319525 Common rpsM 30S ribosomal protein S13 MCAP_0672 243 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 83319858 Common serS seryl-tRNA synthetase MCAP_0839 246 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 83319352 Common - PTS system, mannitol-specific IIBC component, putative MCAP_0028 41 COG2213 MtlA, Phosphotransferase system, mannitol-specific IIBC component Carbohydrate transport and metabolism 83319415 Common - ribosomal protein L7A family MCAP_0334 9 COG1358 RPL8A, Ribosomal protein HS6-type (S12/L30/L7a) Translation, ribosomal structure and biogenesis 83320016 Common - lipoprotein, putative MCAP_0211 12 None None None 83319427 Pathogen - hypothetical protein MCAP_0426 1 None None None 83319513 Common atpE ATP synthase F0, subunit c MCAP_0079 6 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 83319595 Common - lipoprotein, putative MCAP_0720 15 None None None 83319581 Common nusG transcription antitermination protein NusG MCAP_0114 215 COG0250 NusG, Transcription antiterminator Transcription 83319430 Common rpmJ 50S ribosomal protein L36 MCAP_0673 136 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 83319406 Common - lipoprotein, putative MCAP_0513 7 COG5279 CYK3, Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain Cell division and chromosome partitioning 83319395 Common - lipoate-protein ligase MCAP_0224 76 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 83319347 Common cdsA phosphatidate cytidylyltransferase MCAP_0340 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 83319802 Common - transposase IS1296EH (ORFA), putative MCAP_0848 20 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 83319744 Pathogen - lipoprotein, putative MCAP_0846 2 None None None 83319387 Common hupB DNA-binding protein, HU MCAP_0313 184 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 83319762 Common - dihydroxyacetone kinase family protein MCAP_0698 77 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 83319848 Common - hypothetical protein MCAP_0141 3 None None None 83319366 Common gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) MCAP_0576 120 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 83319258 Common - conserved hypothetical protein TIGR00282 MCAP_0479 81 COG1692 COG1692, Uncharacterized protein conserved in bacteria Function unknown 83319570 Common - HIT family protein MCAP_0472 232 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 83319756 Common - hypothetical protein MCAP_0861 80 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 83319990 Pathogen - lipoprotein, putative MCAP_0432 1 None None None 83319923 Common - hypothetical protein MCAP_0135 14 None None None 83319658 Common frr ribosome recycling factor MCAP_0375 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 83319780 Pathogen - hypothetical protein MCAP_0362 3 None None None 83319667 Common - spermidine/putrescine ABC transporter, permease protein and spermidine/putrescine-binding protein MCAP_0200 155 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 83319675 Common tuf elongation factor Tu MCAP_0154 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 83319546 Pathogen - hypothetical protein MCAP_0347 2 None None None 83319632 Pathogen - lipoprotein, putative MCAP_0072 2 None None None 83319557 Common - ABC transporter, ATP-binding protein MCAP_0730 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 83319945 Pathogen - hypothetical protein MCAP_0274 1 None None None 83319490 Pathogen - hypothetical protein MCAP_0582 1 None None None 83319670 Common - lipoprotein, putative MCAP_0329 3 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 83319582 Pathogen - hypothetical protein MCAP_0044 1 None None None