Mycoplasma hyopneumoniae J, complete genome NC_007295 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 71893463 Common gyrB DNA gyrase subunit B MHJ_0106 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 71893520 Common rpoA DNA-directed RNA polymerase subunit alpha MHJ_0164 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 71893669 Pathogen - hypothetical protein MHJ_0315 1 None None None 71893379 Common - putative ABC transporter ATP-binding protein MHJ_0020 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 71893653 Common - putative ABC transporter ATP-binding protein MHJ_0298 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 71894017 Common - hypothetical protein MHJ_0669 6 None None None 71893968 Common rplL 50S ribosomal protein L7/L12 MHJ_0619 209 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 71894022 Common - putative inner membrane protein translocase component YidC MHJ_0674 30 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 71894003 Common gidB glucose-inhibited division protein B MHJ_0655 147 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 71893665 Pathogen - hypothetical protein MHJ_0311 1 None None None 71893462 Pathogen - putative protein P97 MHJ_0105 1 None None None 71893535 Common rplX 50S ribosomal protein L24 MHJ_0179 185 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 71893786 Common sgaU L-xylulose 5-phosphate 3-epimerase MHJ_0435 23 COG3623 SgaU, Putative L-xylulose-5-phosphate 3-epimerase Carbohydrate transport and metabolism 71893399 Pathogen - hypothetical protein MHJ_0040 1 None None None 71893644 Pathogen - hypothetical protein MHJ_0288 1 None None None 71893878 Common upp uracil phosphoribosyltransferase MHJ_0527 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 71894010 Pathogen - hypothetical protein MHJ_0662 1 COG3889 COG3889, Predicted solute binding protein General function prediction only 71893430 Common fusA elongation factor G MHJ_0071 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 71893945 Pathogen - hypothetical protein MHJ_0596 1 None None None 71893387 Common ileS isoleucyl-tRNA synthetase MHJ_0028 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893368 Common - hypothetical protein MHJ_0009 164 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 71893721 Pathogen - putative Lppt protein MHJ_0368 1 None None None 71893849 Common oppF oligopeptide ABC transporter ATP-binding protein MHJ_0498 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 71893956 Common - putative sugar ABC transporter ATP-binding protein MHJ_0607 249 COG3845 COG3845, ABC-type uncharacterized transport systems, ATPase components General function prediction only 71893579 Common iolD myo-inositol catabolism protein MHJ_0223 220 COG3962 COG3962, Acetolactate synthase Amino acid transport and metabolism 71893750 Pathogen - hypothetical protein MHJ_0398 1 None None None 71893865 Pathogen - hypothetical protein MHJ_0514 1 None None None 71893850 Common oppD oligopeptide ABC transporte ATP binding protein MHJ_0499 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 71893858 Pathogen - hypothetical protein MHJ_0507 1 None None None 71893422 Common dnaK molecular chaperone DnaK MHJ_0063 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 71893542 Common rpsS 30S ribosomal protein S19 MHJ_0186 243 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 71893505 Common gmk guanylate kinase MHJ_0149 213 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 71893838 Common pgk phosphoglycerate kinase MHJ_0487 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 71893600 Common - hypothetical protein MHJ_0244 65 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 71893842 Common - putative mannose-6-phosphate isomerase MHJ_0491 48 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 71893782 Pathogen - hypothetical protein MHJ_0431 1 None None None 71893556 Common pth peptidyl-tRNA hydrolase MHJ_0200 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 71893768 Pathogen - hypothetical protein MHJ_0417 1 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 71893683 Common - putative transposase MHJ_0329 30 COG5421 COG5421, Transposase DNA replication, recombination, and repair 71893986 Pathogen secE preprotein translocase subunit SecE MHJ_0638 1 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 71893915 Pathogen - hypothetical protein MHJ_0565 1 None None None 71893699 Common - hypothetical protein MHJ_0346 19 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 71893712 Pathogen - hypothetical protein MHJ_0359 1 None None None 71893623 Common rpmF 50S ribosomal protein L32 MHJ_0267 79 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 71893490 Pathogen - hypothetical protein MHJ_0134 2 None None None 71893614 Common lig DNA ligase MHJ_0258 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 71893636 Common - putative ABC transporter ATP-binding protein MHJ_0280 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 71893810 Pathogen - hypothetical protein MHJ_0459 1 None None None 71893401 Pathogen - hypothetical protein MHJ_0042 1 None None None 71893909 Common - putative PTS system enzyme IIA component MHJ_0558 20 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 71893792 Pathogen - hypothetical protein MHJ_0441 1 None None None 71893528 Common rplO 50S ribosomal protein L15 MHJ_0172 147 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 71893894 Common potB spermidine/putrescine ABC transporter permease protein MHJ_0543 146 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 71893568 Pathogen - hypothetical protein MHJ_0212 2 None None None 71893574 Common glyA serine hydroxymethyltransferase MHJ_0218 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 71893991 Common - putative hemolysin C MHJ_0643 186 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 71893729 Common - putative ABC transporter permease protein MHJ_0376 32 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 71893437 Common nox NADH oxidase MHJ_0078 199 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 71893654 Pathogen - hypothetical protein MHJ_0299 1 None None None 71893972 Common dam DNA adenine methylase MHJ_0623 103 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 71893828 Pathogen - hypothetical protein MHJ_0477 2 None None None 71893705 Pathogen - hypothetical protein MHJ_0352 2 None None None 71893585 Pathogen - hypothetical protein MHJ_0229 1 None None None 71893935 Common nusA transcription elongation factor NusA MHJ_0586 218 COG0195 NusA, Transcription elongation factor Transcription 71893757 Common ftsZ cell division protein ftsZ MHJ_0406 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 71893486 Common lip2 lipase-esterase MHJ_0129 59 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 71893451 Common - hypothetical protein MHJ_0092 3 COG4508 COG4508, Uncharacterized protein conserved in bacteria Function unknown 71893373 Common fba fructose-bisphosphate aldolase MHJ_0014 176 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 71893561 Common trmE tRNA modification GTPase TrmE MHJ_0205 225 COG0486 ThdF, Predicted GTPase General function prediction only 71893458 Common tpiA triosephosphate isomerase MHJ_0099 215 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 71893425 Common engA GTP-binding protein EngA MHJ_0066 227 COG1160 COG1160, Predicted GTPases General function prediction only 71893598 Common eno phosphopyruvate hydratase MHJ_0242 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 71893926 Common rpsD 30S ribosomal protein S4 MHJ_0577 227 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 71893638 Pathogen - hypothetical protein MHJ_0282 1 None None None 71893774 Common - putative type III restriction-modification system: methylase MHJ_0423 92 COG2189 COG2189, Adenine specific DNA methylase Mod DNA replication, recombination, and repair 71893737 Common - putative transposase MHJ_0385 29 None None None 71893416 Common - hypothetical protein MHJ_0057 22 COG0327 COG0327, Uncharacterized conserved protein Function unknown 71893831 Pathogen - hypothetical protein MHJ_0480 1 None None None 71893940 Common - putative PTS system glucose-specific enzyme IIB component MHJ_0591 3 COG1264 PtsG, Phosphotransferase system IIB components Carbohydrate transport and metabolism 71893709 Pathogen - putative P37-like ABC transporter substrate-binding lipoprotein MHJ_0356 1 None None None 71893867 Pathogen - hypothetical protein MHJ_0516 1 None None None 71893807 Common rplA 50S ribosomal protein L1 MHJ_0456 246 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 71893995 Common leuS leucyl-tRNA synthetase MHJ_0647 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893397 Pathogen - hypothetical protein MHJ_0038 1 None None None 71893689 Pathogen - hypothetical protein MHJ_0335 1 None None None 71893938 Common thrS threonyl-tRNA synthetase MHJ_0589 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893667 Pathogen - hypothetical protein MHJ_0313 3 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 71893663 Common - hypothetical protein MHJ_0309 9 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 71893672 Pathogen - hypothetical protein MHJ_0318 2 None None None 71893800 Common - putative ABC transporter ATP-binding protein MHJ_0449 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 71893790 Common - putative transposase MHJ_0439 30 COG5421 COG5421, Transposase DNA replication, recombination, and repair 71893476 Common rplT 50S ribosomal protein L20 MHJ_0119 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 71893549 Pathogen - hypothetical protein MHJ_0193 1 None None None 71893680 Common - hypothetical protein MHJ_0326 105 COG1704 LemA, Uncharacterized conserved protein Function unknown 71893370 Common grpE heat shock protein MHJ_0011 52 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 161611218 Common atpD-1 F0F1 ATP synthase subunit beta MHJ_0475 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 71894005 Common - putative ABC transporter ATP-binding protein P115-like MHJ_0657 190 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 71893660 Pathogen - hypothetical protein MHJ_0305 1 None None None 71893817 Common - putative ABC transporter atp-binding protein MHJ_0466 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 71893512 Common - putative ABC transporter ATP-binding and permease protein MHJ_0156 236 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 71893876 Common lon heat shock ATP-dependent protease MHJ_0525 209 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 71893905 Common mtlA PTS system, mannitol-specific IIBC component MHJ_0554 41 COG2213 MtlA, Phosphotransferase system, mannitol-specific IIBC component Carbohydrate transport and metabolism 71894012 Pathogen - putative ABC transporter ATP-binding - Pr1 MHJ_0664 1 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 71893448 Common - hypothetical protein MHJ_0089 150 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 71893507 Common - hypothetical protein MHJ_0151 3 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 71893420 Common - hypothetical protein MHJ_0061 4 None None None 71893780 Common - hypothetical protein MHJ_0429 16 COG1881 COG1881, Phospholipid-binding protein General function prediction only 71893362 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA MHJ_0003 192 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 71893436 Common - putative amino acid permease MHJ_0077 22 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 71893895 Common potA spermidine/putrescine transport system ATP-binding protein MHJ_0544 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 71893882 Pathogen - hypothetical protein MHJ_0531 1 None None None 71893679 Pathogen - hypothetical protein MHJ_0325 1 None None None 71893735 Common - putative type III restriction-modification system: methylase MHJ_0383 93 COG2189 COG2189, Adenine specific DNA methylase Mod DNA replication, recombination, and repair 71893716 Pathogen - putative lipoprotein MHJ_0363 1 None None None 71893488 Common - putative hexosephosphate transport protein MHJ_0132 11 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 71893856 Common ackA acetate kinase MHJ_0505 161 COG0282 ackA, Acetate kinase Energy production and conversion 71893761 Pathogen - hypothetical protein MHJ_0410 1 None None None 71893746 Pathogen - hypothetical protein MHJ_0394 1 None None None 71893752 Pathogen - hypothetical protein MHJ_0401 2 None None None 71893923 Common fba-1 fructose-bisphosphate aldolase MHJ_0574 176 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 71893974 Common - putative ABC transporter ATP-binding protein - Pr2 MHJ_0625 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 71893492 Common hemK protoporphirogen oxidase MHJ_0136 176 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 71893884 Common polC DNA polymerase III PolC MHJ_0533 212 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 71893727 Pathogen - putative lipoprotein MHJ_0374 1 None None None 71893625 Common - hypothetical protein MHJ_0269 81 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 71893493 Common gltX glutamyl-tRNA synthetase MHJ_0137 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 71893616 Common mgtA cation-transporting P-type ATPase MHJ_0260 232 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 71893954 Common ppa inorganic pyrophosphatase MHJ_0605 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 71893984 Common gcp O-sialoglycoprotein endopeptidase MHJ_0636 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 71893498 Pathogen - putative chromate transport protein MHJ_0142 1 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 71893754 Pathogen - hypothetical protein MHJ_0403 1 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 71893766 Pathogen - hypothetical protein MHJ_0415 1 None None None 71893656 Common baiH NADH dependent flavin oxidoreductase MHJ_0301 177 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 71893759 Common - putative DNA methylase MHJ_0408 98 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 71893558 Common ftsH cell division protein MHJ_0202 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 71893563 Pathogen - hypothetical protein MHJ_0207 1 None None None 71893937 Common glpD glycerol-3-phosphate dehydrogenase MHJ_0588 65 COG0579 COG0579, Predicted dehydrogenase General function prediction only 71893484 Common rplU 50S ribosomal protein L21 MHJ_0127 211 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 71893537 Common rpsQ 30S ribosomal protein S17 MHJ_0181 204 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 71893375 Pathogen - hypothetical protein MHJ_0016 1 None None None 71893982 Common scpB segregation and condensation protein B MHJ_0634 141 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 71893714 Common - hypothetical protein MHJ_0361 3 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 71893772 Pathogen - hypothetical protein MHJ_0421 1 None None None 71893770 Common ruvB Holliday junction DNA helicase B MHJ_0419 241 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 71893840 Common fruA PTS system, fructose-specific IIABC component MHJ_0489 80 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 71893630 Pathogen - hypothetical protein MHJ_0274 1 None None None 71893779 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase MHJ_0428 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 71893924 Common - putative PTS system, N-acetylglucosamine-specific II ABC component MHJ_0575 49 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 71893919 Pathogen - hypothetical protein MHJ_0570 1 None None None 71893390 Common gap glyceraldehyde 3-phosphate dehydrogenase MHJ_0031 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 71893847 Pathogen - hypothetical protein MHJ_0496 1 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 71893423 Common dnaJ heat shock protein DnaJ MHJ_0064 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 71893606 Common recR recombination protein RecR MHJ_0250 203 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 71893675 Pathogen - hypothetical protein MHJ_0321 1 None None None 71893854 Common pdhC dihydrolipoamide acetyltransferase MHJ_0503 194 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 71893576 Common iolC myo-inositol catabolism protein MHJ_0220 145 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 71893465 Pathogen - hypothetical protein MHJ_0108 1 None None None 71893993 Common rplI 50S ribosomal protein L9 MHJ_0645 6 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 71893445 Pathogen - hypothetical protein MHJ_0086 1 None None None 71893707 Common glpF glycerol uptake facilitator protein MHJ_0354 84 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 71893870 Pathogen - hypothetical protein MHJ_0519 1 None None None 71893522 Common rpsM 30S ribosomal protein S13 MHJ_0166 230 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 71893963 Pathogen - hypothetical protein MHJ_0614 2 COG2433 COG2433, Uncharacterized conserved protein Function unknown 71893587 Pathogen - hypothetical protein MHJ_0231 1 None None None 71894024 Common rpmH 50S ribosomal protein L34 MHJ_0676 6 COG0230 RpmH, Ribosomal protein L34 Translation, ribosomal structure and biogenesis 71893439 Common deoD purine-nucleoside phosphorylase MHJ_0080 77 COG0813 DeoD, Purine-nucleoside phosphorylase Nucleotide transport and metabolism 71893360 Common dnaA chromosomal replication initiation protein MHJ_0001 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 71893952 Common - hypothetical protein MHJ_0603 29 COG1481 COG1481, Uncharacterized protein conserved in bacteria Function unknown 71893474 Pathogen - hypothetical protein MHJ_0117 1 None None None 71893742 Common - putative transposase MHJ_0390 29 None None None 71893976 Common - putative ABC transporter ATP-binding - Pr1-like MHJ_0628 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 71893785 Common araD L-ribulose-5-phosphate 4-epimerase MHJ_0434 97 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 71893883 Common pgiB glucose-6-phosphate isomerase MHJ_0532 206 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 71893819 Common - hypothetical protein MHJ_0468 22 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 71893546 Common rplC 50S ribosomal protein L3 MHJ_0190 249 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 71893519 Common rplQ 50S ribosomal protein L17 MHJ_0163 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 71893510 Common - hypothetical protein MHJ_0154 100 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 71893552 Common - putative 26.3 kDa protein in cilium adhesin operon MHJ_0196 189 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 71893541 Common rplV 50S ribosomal protein L22 MHJ_0185 216 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 71893732 Common - putative ABC transporter ATP-binding protein MHJ_0379 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 71893998 Common rpsI 30S ribosomal protein S9 MHJ_0650 248 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 71894021 Common - hypothetical protein MHJ_0673 8 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 71893446 Pathogen - hypothetical protein MHJ_0087 1 None None None 71893964 Common ddem cytosine specific DNA methyltransferase MHJ_0615 124 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 71893692 Pathogen - hypothetical protein MHJ_0339 1 None None None 71893959 Common tdk thymidine kinase MHJ_0610 96 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 71894006 Pathogen rpmG 50S ribosomal protein L33 MHJ_0658 1 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 71893577 Common iolB myo-inositol catabolism protein MHJ_0221 10 COG3718 IolB, Uncharacterized enzyme involved in inositol metabolism Carbohydrate transport and metabolism 71893596 Common - hypothetical protein MHJ_0240 3 COG0477 ProP, Permeases of the major facilitator superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only 71893471 Pathogen - hypothetical protein MHJ_0114 1 None None None 71893873 Common pepF oligoendopeptidase F MHJ_0522 83 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 71893467 Common apt adenine phosphoribosyltransferase MHJ_0110 186 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 71893524 Common infA translation initiation factor IF-1 MHJ_0168 114 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 71893932 Common dnaE DNA polymerase III DnaE MHJ_0583 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 71893466 Common - putative amino acid permease MHJ_0109 9 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 71893949 Pathogen - hypothetical protein MHJ_0600 1 None None None 71893907 Common ulaA ascorbate-specific PTS system enzyme IIC MHJ_0556 36 COG3037 SgaT, Uncharacterized protein conserved in bacteria Function unknown 71894014 Pathogen - hypothetical protein MHJ_0666 1 None None None 71893802 Common acpD acyl carrier protein phosphodiesterase MHJ_0451 7 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 71893839 Pathogen - hypothetical protein MHJ_0488 1 None None None 71893648 Pathogen - hypothetical protein MHJ_0292 1 None None None 71893581 Common mglA ribose ABC transport ATP-binding protein MHJ_0225 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 71893604 Common dnaX DNA polymerase III subunits gamma and tau MHJ_0248 249 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 71893565 Common oppC-1 oligopeptide transport system permease protein MHJ_0209 212 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 71893815 Pathogen - hypothetical protein MHJ_0464 2 None None None 71893725 Common ulaA ascorbate-specific PTS system enzyme IIC MHJ_0372 36 COG3037 SgaT, Uncharacterized protein conserved in bacteria Function unknown 71893791 Pathogen - hypothetical protein MHJ_0440 1 None None None 71893433 Pathogen - hypothetical protein MHJ_0074 1 None None None 71893531 Common rplF 50S ribosomal protein L6 MHJ_0175 243 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 71893444 Common - putative subtilisin-like serine protease MHJ_0085 7 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 71893405 Common atpH ATP synthase delta chain MHJ_0046 63 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 71893886 Common frr ribosome recycling factor MHJ_0535 215 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 71893482 Common - putative aminopeptidase MHJ_0125 87 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 71893996 Common uvrB excinuclease ABC subunit B MHJ_0648 231 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 71893455 Common - putative outer membrane protein - P95 MHJ_0096 5 None None None 71893778 Pathogen - hypothetical protein MHJ_0427 1 None None None 71893429 Pathogen - hypothetical protein MHJ_0070 1 None None None 71893701 Pathogen - putative P60-like lipoprotein MHJ_0348 1 None None None 71893875 Common tuf elongation factor Tu MHJ_0524 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 71893500 Common - hypothetical protein MHJ_0144 94 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 71893798 Common - hypothetical protein MHJ_0447 81 COG1692 COG1692, Uncharacterized protein conserved in bacteria Function unknown 71893930 Pathogen mnuA membrane nuclease, lipoprotein MHJ_0581 2 COG2374 COG2374, Predicted extracellular nuclease General function prediction only 71893659 Common - putative glycine cleavage system H protein MHJ_0304 49 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 71893939 Common trpS tryptophanyl-tRNA synthetase MHJ_0590 229 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893868 Common - putative ISMHp1 transposase MHJ_0517 31 COG5421 COG5421, Transposase DNA replication, recombination, and repair 71893487 Common - hypothetical protein MHJ_0131 5 COG1284 COG1284, Uncharacterized conserved protein Function unknown 71893734 Common proS prolyl-tRNA synthetase MHJ_0381 139 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893764 Pathogen - hypothetical protein MHJ_0413 1 None None None 71893921 Common pdhD-1 dihydrolipoamide dehydrogenase MHJ_0572 248 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 71893376 Pathogen - hypothetical protein MHJ_0017 1 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 71893499 Pathogen - hypothetical protein MHJ_0143 2 None None None 71893673 Common - hypothetical protein MHJ_0319 45 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 71893697 Pathogen - hypothetical protein MHJ_0344 1 None None None 71893414 Common dnaG DNA primase MHJ_0055 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 71893912 Pathogen - hypothetical protein MHJ_0561 1 None None None 71893383 Common gatA amidase MHJ_0024 218 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 71893365 Common - putative DHH family phosphoesterase MHJ_0006 73 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 161611222 Common rpsC 30S ribosomal protein S3 MHJ_0184 246 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 71893749 Pathogen - hypothetical protein MHJ_0397 1 None None None 71893844 Pathogen - putative P216 surface protein MHJ_0493 1 None None None 71893852 Common oppB oligopeptide ABC transporter permease protein MHJ_0501 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 71893677 Pathogen - hypothetical protein MHJ_0323 1 None None None 71893891 Common - hypothetical protein MHJ_0540 8 None None None 71893394 Common recA recombinase A MHJ_0035 241 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 71893901 Common - putative ISMHp1 transposase MHJ_0550 31 COG5421 COG5421, Transposase DNA replication, recombination, and repair 71893601 Common lip triacylglycerol lipase MHJ_0245 23 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 71893594 Common - putative conserved hypothetical protein MHJ_0238 5 None None None 71893642 Common ssb single-strand binding protein MHJ_0286 33 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 71893859 Pathogen - hypothetical protein MHJ_0508 1 None None None 71893744 Pathogen - putative parital transposase MHJ_0392 1 None None None 71893836 Common - hypothetical protein MHJ_0485 66 COG1624 COG1624, Uncharacterized conserved protein Function unknown 71893457 Common clpB ATP-dependent protease binding protein MHJ_0098 225 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 71893418 Common tyrS tyrosyl tRNA synthetase MHJ_0059 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893703 Pathogen - hypothetical protein MHJ_0350 1 None None None 71893756 Common - putative S-adenosyl-methyltransferase MHJ_0405 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 71893469 Common pdhB pyruvate dehydrogenase MHJ_0112 196 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 71893804 Common rpmE 50S ribosomal protein L31 MHJ_0453 103 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 71893950 Pathogen - hypothetical protein MHJ_0601 1 None None None 71893946 Pathogen - hypothetical protein MHJ_0597 1 None None None 71893554 Common - hypothetical protein MHJ_0198 121 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 71893711 Pathogen - putative ABC transport system permease protein p69 - like MHJ_0358 1 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 71893916 Pathogen - hypothetical protein MHJ_0566 1 None None None 71894018 Pathogen - hypothetical protein MHJ_0670 1 None None None 71893408 Common atpD F0F1 ATP synthase subunit beta MHJ_0049 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 71893389 Common parE topoisomerase IV subunit B MHJ_0030 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 71893966 Common rpoC DNA-directed RNA polymerase subunit beta' MHJ_0617 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 71893871 Pathogen - hypothetical protein MHJ_0520 1 None None None 71893690 Pathogen - hypothetical protein MHJ_0337 1 None None None 71894008 Pathogen - hypothetical protein MHJ_0660 1 None None None 71893517 Common - hypothetical protein MHJ_0161 7 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 71893544 Common rplW 50S ribosomal protein L23 MHJ_0188 113 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 71893943 Common - hypothetical protein MHJ_0594 12 COG3763 COG3763, Uncharacterized protein conserved in bacteria Function unknown 71893570 Pathogen - hypothetical protein MHJ_0214 1 None None None 71893863 Common xylG xylose ABC transporter ATP-binding protein MHJ_0512 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 71893460 Pathogen - hypothetical protein MHJ_0103 1 None None None 71893592 Common - hypothetical protein MHJ_0236 27 COG2731 EbgC, Beta-galactosidase, beta subunit Carbohydrate transport and metabolism 71893508 Common era GTP-binding protein Era MHJ_0152 217 COG1159 Era, GTPase General function prediction only 71893685 Common - hypothetical protein MHJ_0331 3 None None None 71894001 Common - hypothetical protein MHJ_0653 234 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 71893650 Common - putative permease MHJ_0294 13 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 71893796 Pathogen - hypothetical protein MHJ_0445 2 None None None 71893453 Common lgt prolipoprotein diacylglyceryl transferase MHJ_0094 133 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 71893431 Common rpsG 30S ribosomal protein S7 MHJ_0072 242 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 71893427 Pathogen - hypothetical protein MHJ_0068 1 None None None 71893889 Common - hypothetical protein MHJ_0538 13 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 71893652 Common - putative ABC transporter ATP-binding protein MHJ_0297 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 71893480 Common - hypothetical protein MHJ_0123 12 None None None 71893776 Common efp elongation factor P MHJ_0425 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 71893739 Common - putative partial transposase MHJ_0387 77 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 71893861 Pathogen - hypothetical protein MHJ_0510 1 None None None 71893928 Common fpg formamidopyrimidine-DNA glycosylase MHJ_0579 182 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 71893459 Common rpsO 30S ribosomal protein S15 MHJ_0100 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 71893583 Common rbsB periplasmic sugar-binding proteins MHJ_0227 90 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 71893366 Pathogen - hypothetical protein MHJ_0007 1 COG3600 GepA, Uncharacterized phage-associated protein Function unknown 71893890 Common - putative ISMHp1 transposase MHJ_0539 30 COG5421 COG5421, Transposase DNA replication, recombination, and repair 71893572 Common nrdI ribonucleotide reductase stimulatory protein MHJ_0216 37 COG1780 NrdI, Protein involved in ribonucleotide reduction Nucleotide transport and metabolism 71893567 Common oppF-1 oligopeptide ABC transporter ATP-binding protein MHJ_0211 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 71893611 Common - putative ABC transporter ATP-binding protein MHJ_0255 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 71893378 Common - putative ABC transporter ATP-binding protein MHJ_0019 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 71893718 Common - putative ABC transporter permease protein MHJ_0365 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 71893897 Pathogen - hypothetical protein MHJ_0546 1 None None None 71893618 Common - putative nuclease, lipoprotein MHJ_0262 15 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 71893526 Common adk adenylate kinase MHJ_0170 231 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 71893671 Pathogen - hypothetical protein MHJ_0317 1 None None None 71893822 Common - hypothetical protein MHJ_0471 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 71893723 Common sgaA PTS system, IIA component MHJ_0370 43 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 71893533 Common rpsN 30S ribosomal protein S14 MHJ_0177 143 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 71893634 Common rpsP 30S ribosomal protein S16 MHJ_0278 213 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 71893608 Common - DNA polymerase III subunit delta' MHJ_0252 62 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 71893888 Pathogen - hypothetical protein MHJ_0537 1 None None None 161611224 Common secA preprotein translocase subunit SecA MHJ_0082 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 71893988 Common - putative tRNA/rRNA methyltransferase MHJ_0640 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 71893621 Common pheS phenylalanyl-tRNA synthetase alpha chain MHJ_0265 248 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 71893794 Pathogen - hypothetical protein MHJ_0443 2 None None None 71893403 Common atpE F0F1 ATP synthase subunit C MHJ_0044 89 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 71893380 Pathogen - hypothetical protein MHJ_0021 1 None None None 71893910 Pathogen - hypothetical protein MHJ_0559 1 None None None 71893961 Common - hypothetical protein MHJ_0612 59 COG2190 NagE, Phosphotransferase system IIA components Carbohydrate transport and metabolism 71893813 Common trmB tRNA (guanine-N(7))-methyltransferase MHJ_0462 149 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 71893412 Common ffh signal recognition particle protein MHJ_0053 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 71893730 Common - putative ABC transporter permease protein MHJ_0377 2 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 71893496 Common - putative tRNA/rRNA methyltransferase MHJ_0140 133 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 71893978 Pathogen - hypothetical protein MHJ_0630 2 None None None 71893762 Common rnc ribonuclease III MHJ_0411 190 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 71893627 Common - putative transcriptional regulator MHJ_0271 20 COG1737 RpiR, Transcriptional regulators Transcription 71893613 Common - putative ABC transporter permease protein MHJ_0257 42 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 71893639 Common - hypothetical protein MHJ_0283 3 None None None 71893698 Pathogen - hypothetical protein MHJ_0345 3 COG3611 DnaB, Replication initiation/membrane attachment protein DNA replication, recombination, and repair 71893573 Common nrdF ribonucleotide-diphosphate reductase subunit beta MHJ_0217 75 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 71893985 Common nusG transcription antitermination protein NusG MHJ_0637 215 COG0250 NusG, Transcription antiterminator Transcription 71893410 Common rpsB 30S ribosomal protein S2 MHJ_0051 242 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 71893452 Common tpx thiol peroxidase MHJ_0093 52 COG2077 Tpx, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 71893367 Common ftsY cell division protein ftsY MHJ_0008 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 71893793 Pathogen - hypothetical protein MHJ_0442 1 None None None 71893758 Common - nicotinate phosphoribosyltransferase MHJ_0407 90 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 71893914 Common - putative ISMHp1 transposase MHJ_0564 31 COG5421 COG5421, Transposase DNA replication, recombination, and repair 71893936 Common pulA pullulanase MHJ_0587 127 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 71893971 Pathogen - putative lipoprotein MHJ_0622 2 None None None 71893491 Common prfA peptide chain release factor 1 MHJ_0135 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 71893497 Common - putative chromate transport protein MHJ_0141 27 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 71893903 Common mtlF PTS system mannitol-specific component IIA MHJ_0552 53 COG4668 MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain Carbohydrate transport and metabolism 71893728 Common - putative ABC transport ATP-binding protein MHJ_0375 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 71893438 Common deoA thymidine phosphorylase MHJ_0079 120 COG0213 DeoA, Thymidine phosphorylase Nucleotide transport and metabolism 71893529 Common rpsE 30S ribosomal protein S5 MHJ_0173 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 71893887 Common pyrH uridylate kinase MHJ_0536 234 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 71893962 Pathogen - hypothetical protein MHJ_0613 2 None None None 71893674 Pathogen - hypothetical protein MHJ_0320 1 None None None 71893515 Common tlyA haemolysin MHJ_0159 131 COG1189 COG1189, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 71893827 Common atpA F0F1 ATP synthase subunit alpha MHJ_0476 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 71893706 Common - putative amino acid permease MHJ_0353 55 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 71893590 Common hisS histidyl-tRNA synthetase MHJ_0234 226 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893534 Common rplE 50S ribosomal protein L5 MHJ_0178 248 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 71893612 Common - putative ABC transporter ATP-binding protein MHJ_0256 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 71893992 Common dnaB replicative DNA helicase MHJ_0644 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 71893560 Common - putative hydrolase of the HAD family MHJ_0204 91 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 71893927 Common rpiB ribose-5-phosphate isomerase B MHJ_0578 126 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 71893908 Common - putative PTS system galactitol-specific enzyme IIB component MHJ_0557 4 COG3414 SgaB, Phosphotransferase system, galactitol-specific IIB component Carbohydrate transport and metabolism 71893775 Pathogen - hypothetical protein MHJ_0424 1 None None None 71893736 Common - hypothetical protein MHJ_0384 22 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 71893426 Common himA bacterial nucleoid DNA-binding protein MHJ_0067 94 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 71893893 Common potC spermidine/putrescine ABC transporter permease protein MHJ_0542 22 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 71893485 Common rpmA 50S ribosomal protein L27 MHJ_0128 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 71893619 Pathogen - putative P102 - like MHJ_0263 1 None None None 71893392 Common vacB VACB-like ribonuclease II MHJ_0033 192 COG0557 VacB, Exoribonuclease R Transcription 71893713 Pathogen - hypothetical protein MHJ_0360 1 COG0658 ComEC, Predicted membrane metal-binding protein General function prediction only 71893475 Common rpmB 50S ribosomal protein L28 MHJ_0118 39 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 71893688 Pathogen - hypothetical protein MHJ_0334 1 None None None 71893599 Common serS seryl-tRNA synthetase MHJ_0243 244 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893664 Common - putative ISMHp1 transposase MHJ_0310 30 COG5421 COG5421, Transposase DNA replication, recombination, and repair 71893941 Common - putative ATP-binding protein MHJ_0592 74 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 71893545 Common rplD 50S ribosomal protein L4 MHJ_0189 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 71894004 Common - putative prolipoprotein p65 MHJ_0656 3 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 71893668 Pathogen - hypothetical protein MHJ_0314 1 None None None 71893372 Pathogen - hypothetical protein MHJ_0013 1 COG3343 RpoE, DNA-directed RNA polymerase, delta subunit Transcription 71894016 Common - hypothetical protein MHJ_0668 46 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 71893643 Common rpsF 30S ribosomal protein S6 MHJ_0287 4 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 71893398 Pathogen - hypothetical protein MHJ_0039 1 None None None 71893391 Pathogen - hypothetical protein MHJ_0032 1 None None None 71893789 Pathogen - hypothetical protein MHJ_0438 1 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 71893806 Common rluD ribosomal large subunit pseudouridine synthase D MHJ_0455 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 71893944 Common pgm phosphoglyceromutase MHJ_0595 126 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 71893521 Common rpsK 30S ribosomal protein S11 MHJ_0165 239 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 71893415 Common rpoD RNA polymerase sigma factor RpoD MHJ_0056 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 71893904 Common mtlD mannitol-1-phosphate 5-dehydrogenase MHJ_0553 36 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 71893832 Pathogen - hypothetical protein MHJ_0481 1 None None None 71894023 Common rnpA ribonuclease P protein component MHJ_0675 16 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 71893720 Common - putative ABC transporter permease protein MHJ_0367 141 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 71893464 Common pfkA 6-phosphofructokinase MHJ_0107 144 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 71893478 Common infC translation initiation factor IF-3 MHJ_0121 208 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 71893857 Common eutD phosphotransacetylase MHJ_0506 163 COG0280 Pta, Phosphotransacetylase Energy production and conversion 71893811 Common - hypothetical protein MHJ_0460 3 None None None 71893841 Pathogen - hypothetical protein MHJ_0490 1 None None None 71893837 Pathogen - hypothetical protein MHJ_0486 1 None None None 71893751 Pathogen - hypothetical protein MHJ_0400 2 None None None 71893421 Common uvrC excinuclease ABC subunit C MHJ_0062 224 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 71893440 Pathogen - hypothetical protein MHJ_0081 1 None None None 71893957 Common - putative ABC transporter protein MHJ_0608 127 COG4603 COG4603, ABC-type uncharacterized transport system, permease component General function prediction only 71893388 Common parC DNA topoisomerase IV subunit A MHJ_0029 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 71893624 Common truB tRNA pseudouridine synthase B MHJ_0268 231 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 71893402 Common atpB F0F1 ATP synthase subunit A MHJ_0043 14 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 71893879 Common deoC deoxyribose-phosphate aldolase MHJ_0528 137 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 71893555 Pathogen - hypothetical protein MHJ_0199 1 None None None 71893864 Common xylH xylose ABC transporter permease protein MHJ_0513 129 COG4214 XylH, ABC-type xylose transport system, permease component Carbohydrate transport and metabolism 71893783 Pathogen - hypothetical protein MHJ_0432 1 None None None 71893447 Common uvrA excinuclease ABC subunit A MHJ_0088 245 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 71893769 Common ruvA Holliday junction DNA helicase motor protein MHJ_0418 145 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 71893678 Pathogen - hypothetical protein MHJ_0324 1 None None None 71893550 Common - putative protein P97 MHJ_0194 2 None None None 71893973 Common - putative ABC transporter ATP-binding - Pr1 MHJ_0624 167 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 71893896 Pathogen - hypothetical protein MHJ_0545 1 None None None 71893767 Common pcrA ATP-dependent helicase PcrA MHJ_0416 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 71893615 Common - hypothetical protein MHJ_0259 24 COG1323 COG1323, Predicted nucleotidyltransferase General function prediction only 71893494 Pathogen - hypothetical protein MHJ_0138 1 None None None 71893504 Common - hypothetical protein MHJ_0148 156 COG1162 COG1162, Predicted GTPases General function prediction only 71893559 Common lysS lysyl-tRNA synthetase MHJ_0203 249 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 71893820 Common ptsI phosphoenolpyruvate-protein phosphotransferase MHJ_0469 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 71893385 Pathogen - hypothetical protein MHJ_0026 1 None None None 71893369 Common hrcA heat-inducible transcription repressor MHJ_0010 146 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 71893575 Common - putative methylmalonate-semialdehyde dehydrogenase MHJ_0219 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 71893419 Common - hypothetical protein MHJ_0060 93 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 71893626 Common - hypothetical protein MHJ_0270 68 COG0196 RibF, FAD synthase Coenzyme metabolism 71893400 Common dinP DNA polymerase IV MHJ_0041 181 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 71893983 Pathogen - hypothetical protein MHJ_0635 1 COG0392 COG0392, Predicted integral membrane protein Function unknown 71893816 Pathogen - hypothetical protein MHJ_0465 2 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 71893918 Common - hypothetical protein MHJ_0569 4 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 71893981 Common scpA segregation and condensation protein A MHJ_0633 137 COG1354 COG1354, Uncharacterized conserved protein Function unknown 71893631 Common topA DNA topoisomerase I MHJ_0275 244 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 71893424 Common cmk cytidylate kinase MHJ_0065 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 71893771 Common - hypothetical protein MHJ_0420 8 None None None 71893773 Pathogen - hypothetical protein MHJ_0422 1 None None None 71893848 Common - asparagine synthetase A MHJ_0497 125 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 71893629 Common pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase MHJ_0273 163 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 71893825 Common - hypothetical protein MHJ_0474 81 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 71893655 Common - hypothetical protein MHJ_0300 16 COG1511 COG1511, Predicted membrane protein Function unknown 71893536 Common rplN 50S ribosomal protein L14 MHJ_0180 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 161611220 Common rpsR 30S ribosomal protein S18 MHJ_0285 214 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 71893925 Common nagB glucosamine-6-phosphate deaminase MHJ_0576 80 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 71893708 Common glpK glycerol kinase MHJ_0355 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 71893586 Pathogen - hypothetical protein MHJ_0230 1 None None None 71893605 Common - hypothetical protein MHJ_0249 4 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 71893374 Common rluC ribosomal large subunit pseudouridine synthase C MHJ_0015 192 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 71893450 Common - hypothetical protein MHJ_0091 18 COG4487 COG4487, Uncharacterized protein conserved in bacteria Function unknown 71893913 Pathogen - hypothetical protein MHJ_0562 1 None None None 71893396 Common obgE GTPase ObgE MHJ_0037 248 COG0536 Obg, Predicted GTPase General function prediction only 71893994 Common - hypothetical protein MHJ_0646 21 COG3887 COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain Signal transduction mechanisms 71893740 Pathogen - hypothetical protein MHJ_0388 1 None None None 71893646 Pathogen - hypothetical protein MHJ_0290 1 None None None 71893801 Common - hypothetical protein MHJ_0450 3 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 71893523 Pathogen rpmJ 50S ribosomal protein L36 MHJ_0167 1 None None None 71893371 Common argS arginyl-tRNA synthetase MHJ_0012 248 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893645 Pathogen - hypothetical protein MHJ_0289 1 None None None 71894011 Pathogen - putative adhesin like-protein P146 MHJ_0663 1 None None None 71893877 Pathogen - hypothetical protein MHJ_0526 2 None None None 71893787 Common ulaD 3-keto-L-gulonate-6-phosphate decarboxylase MHJ_0436 54 COG0269 SgbH, 3-hexulose-6-phosphate synthase and related proteins Carbohydrate transport and metabolism 71893808 Common rplK 50S ribosomal protein L11 MHJ_0457 247 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 71893834 Common - hypothetical protein MHJ_0483 2 None None None 71893483 Common ung uracil-DNA glycosylase MHJ_0126 128 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 71893518 Common rluB ribosomal large subunit pseudouridine synthase B MHJ_0162 205 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 71893694 Pathogen - hypothetical protein MHJ_0341 1 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 71893662 Common - putative ABC transporter ATP-binding protein MHJ_0307 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 161611217 Common rplJ 50S ribosomal protein L10 MHJ_0620 193 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 71893686 Pathogen - hypothetical protein MHJ_0332 2 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 71893846 Pathogen - hypothetical protein MHJ_0495 1 None None None 71893548 Pathogen - hypothetical protein MHJ_0192 1 None None None 71893386 Pathogen lsp lipoprotein signal peptidase MHJ_0027 1 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 71893562 Common - putative ABC transporter ATP-binding protein MHJ_0206 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 71893681 Pathogen - hypothetical protein MHJ_0327 1 None None None 71893473 Pathogen - hypothetical protein MHJ_0116 1 None None None 71893666 Pathogen - hypothetical protein MHJ_0312 1 None None None 71893866 Common glck glucokinase MHJ_0515 131 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 71893513 Common deoB phosphopentomutase MHJ_0157 70 COG1015 DeoB, Phosphopentomutase Carbohydrate transport and metabolism 71893781 Common - hypothetical protein MHJ_0430 4 None None None 71893906 Common - hypothetical protein MHJ_0555 3 COG1737 RpiR, Transcriptional regulators Transcription 71893363 Common - hypothetical protein MHJ_0004 99 COG1576 COG1576, Uncharacterized conserved protein Function unknown 71893569 Common - putative lipoprotein MHJ_0213 7 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 71893999 Common rplM 50S ribosomal protein L13 MHJ_0651 222 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 71893489 Common ldh L-lactate dehydrogenase MHJ_0133 173 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 71893855 Common pdhD dihydrolipoamide dehydrogenase MHJ_0504 245 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 71893747 Pathogen - hypothetical protein MHJ_0395 1 None None None 71893435 Pathogen - hypothetical protein MHJ_0076 1 None None None 71893597 Common smf DNA processing protein SMF MHJ_0241 124 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 71893715 Pathogen - putative lipoprotein MHJ_0362 1 None None None 71893753 Pathogen - hypothetical protein MHJ_0402 1 None None None 71893543 Common rplB 50S ribosomal protein L2 MHJ_0187 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 71893506 Common - putative DNA methylase MHJ_0150 212 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 71893557 Common - hypothetical protein MHJ_0201 86 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 71893760 Common metG methionyl-tRNA synthetase MHJ_0409 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893588 Pathogen - hypothetical protein MHJ_0232 1 None None None 71893881 Common pmsR methionine sulfoxide reductase B MHJ_0530 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 71893538 Common rpmC 50S ribosomal protein L29 MHJ_0182 5 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 71893955 Common xylF ABC transporter xylose-binding lipoprotein MHJ_0606 22 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 71893724 Common - putative PTS system enzyme IIB component MHJ_0371 34 COG3414 SgaB, Phosphotransferase system, galactitol-specific IIB component Carbohydrate transport and metabolism 71893814 Pathogen - hypothetical protein MHJ_0463 1 None None None 71893845 Pathogen - putative p76 membrane protein precursor MHJ_0494 1 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 71893364 Common - putative MgpA like-protein MHJ_0005 61 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 71893670 Pathogen - hypothetical protein MHJ_0316 1 None None None 71893434 Pathogen - hypothetical protein MHJ_0075 1 None None None 71893731 Common - putative proline dipeptidase MHJ_0378 25 COG1739 COG1739, Uncharacterized conserved protein Function unknown 71893717 Pathogen - putative lipoprotein MHJ_0364 1 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 71893443 Pathogen - hypothetical protein MHJ_0084 1 None None None 71893481 Pathogen - hypothetical protein MHJ_0124 1 None None None 71893530 Common rplR 50S ribosomal protein L18 MHJ_0174 208 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 71893580 Common iolE myo-inositol catabolism protein MHJ_0224 64 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 71893869 Pathogen - hypothetical protein MHJ_0518 1 None None None 71893539 Common rplP 50S ribosomal protein L16 MHJ_0183 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 71893860 Pathogen - hypothetical protein MHJ_0509 1 None None None 71893589 Common secD bifunctional preprotein translocase subunit SecD/SecF MHJ_0233 207 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 71893658 Common - hypothetical protein MHJ_0303 14 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 71893603 Pathogen - hypothetical protein MHJ_0247 1 None None None 71893922 Common nagA N-acetylglucosamine-6-phosphate deacetylase MHJ_0573 108 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 71893702 Common hit HIT-like protein MHJ_0349 149 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 71893755 Common - hypothetical protein MHJ_0404 110 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 71893564 Common oppB-1 oligopeptide ABC transporter system permease MHJ_0208 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 71893799 Common metK S-adenosylmethionine synthetase MHJ_0448 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 71893502 Pathogen - hypothetical protein MHJ_0146 1 None None None 71893931 Common - putative 5'-3' exonuclease MHJ_0582 216 COG0258 Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair 71893980 Pathogen plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase MHJ_0632 1 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 71893997 Common - hypothetical protein MHJ_0649 6 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 71893765 Common asnC asparaginyl-tRNA synthetase MHJ_0414 246 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 71893898 Pathogen - hypothetical protein MHJ_0547 1 None None None 71893695 Pathogen - hypothetical protein MHJ_0342 1 COG1158 Rho, Transcription termination factor Transcription 71893657 Common lplA-1 lipoate-protein ligase A MHJ_0302 72 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 71893989 Common cysS cysteinyl-tRNA synthetase MHJ_0641 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893687 Common - putative ABC transporter ATP-binding protein MHJ_0333 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 161611221 Common pyrG CTP synthetase MHJ_0272 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 71893748 Pathogen - hypothetical protein MHJ_0396 2 None None None 71893975 Common - hypothetical protein MHJ_0627 105 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 71893495 Common - putative tRNA/rRNA methyltransferase MHJ_0139 131 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 71893406 Common atpA-1 F0F1 ATP synthase subunit alpha MHJ_0047 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 71893609 Common - hypothetical protein MHJ_0253 202 COG0313 COG0313, Predicted methyltransferases General function prediction only 71893633 Common trmD tRNA (guanine-N1)-methyltransferase MHJ_0277 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 71893413 Common glyS glycyl-tRNA synthetase MHJ_0054 96 COG0423 GRS1, Glycyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 71893741 Pathogen - hypothetical protein MHJ_0389 1 None None None 71893632 Common rplS 50S ribosomal protein L19 MHJ_0276 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 71893382 Pathogen gatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit MHJ_0023 1 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 71893911 Common - putative d-ribulose-5-phosphate 3 epimerase MHJ_0560 55 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 71893620 Common - putative P97 - like MHJ_0264 10 None None None 71893743 Common - putative partial transposase MHJ_0391 86 COG1693 COG1693, Uncharacterized protein conserved in archaea Function unknown 71893503 Common rpe ribulose-phosphate 3-epimerase MHJ_0147 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 71893509 Common cdd cytidine deaminase MHJ_0153 104 COG0295 Cdd, Cytidine deaminase Nucleotide transport and metabolism 71893726 Common - hypothetical protein MHJ_0373 35 COG1735 Php, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 71893953 Pathogen - hypothetical protein MHJ_0604 1 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 71893551 Pathogen - putative protein P102 MHJ_0195 1 None None None 71893384 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B MHJ_0025 213 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 71893965 Common - hypothetical protein MHJ_0616 3 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 71893853 Pathogen - putative lipoprotein MHJ_0502 1 None None None 71893733 Common - putative thioredoxin MHJ_0380 26 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 71893511 Pathogen - hypothetical protein MHJ_0155 1 None None None 71894013 Pathogen - hypothetical protein MHJ_0665 1 None None None 71893361 Common dnaN DNA polymerase III beta subunit MHJ_0002 57 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 71893595 Common - putative TRSE-like protein MHJ_0239 44 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 71893661 Common - putative ABC transporter ATP-binding protein MHJ_0306 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 71893874 Common - hypothetical protein MHJ_0523 3 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 71894000 Common ksgA dimethyladenosine transferase MHJ_0652 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 71893472 Pathogen - hypothetical protein MHJ_0115 2 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 71893684 Pathogen - hypothetical protein MHJ_0330 1 None None None 71893417 Common nfo endonuclease IV MHJ_0058 98 COG0648 Nfo, Endonuclease IV DNA replication, recombination, and repair 71893547 Common rpsJ 30S ribosomal protein S10 MHJ_0191 218 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 71893409 Common recU Holliday junction-specific endonuclease MHJ_0050 17 COG3331 PrfA, Penicillin-binding protein-related factor A, putative recombinase General function prediction only 71893456 Pathogen - hypothetical protein MHJ_0097 1 None None None 71894007 Common pepP XAA-PRO aminopeptidase MHJ_0659 248 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 71893693 Pathogen - hypothetical protein MHJ_0340 1 None None None 71893700 Pathogen - hypothetical protein MHJ_0347 1 None None None 71893395 Common licA PTS system, lichenan-specific IIA component MHJ_0036 17 COG0510 CotS, Predicted choline kinase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 71893823 Common pfs 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MHJ_0472 4 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 71893803 Common acpD-1 acyl carrier protein phosphodiesterase MHJ_0452 16 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 71893947 Pathogen - hypothetical protein MHJ_0598 1 None None None 71893948 Pathogen - hypothetical protein MHJ_0599 1 None None None 71893833 Common - hypothetical protein MHJ_0482 89 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 71893647 Pathogen - hypothetical protein MHJ_0291 1 None None None 71893809 Pathogen - hypothetical protein MHJ_0458 1 None None None 71893525 Common map methionine aminopeptidase MHJ_0169 249 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 71893468 Common pdhA pyruvate dehydrogenase E1-alpha subunit MHJ_0111 154 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 71893479 Common pyk pyruvate kinase MHJ_0122 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 71893933 Pathogen rbfA ribosome-binding factor A MHJ_0584 1 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 71893428 Common lepA GTP-binding protein LepA MHJ_0069 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 71893593 Common rpsT 30S ribosomal protein S20 MHJ_0237 50 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 71893885 Common - putative phosphatidate cytidylyltransferase synthase MHJ_0534 44 COG4589 COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase General function prediction only 71893821 Common nadE NH(3)-dependent NAD+ synthetase MHJ_0470 217 COG0171 NadE, NAD synthase Coenzyme metabolism 71893862 Common - putative 46K surface antigen precursor MHJ_0511 58 COG4213 XylF, ABC-type xylose transport system, periplasmic component Carbohydrate transport and metabolism 71893929 Pathogen - hypothetical protein MHJ_0580 2 COG0510 CotS, Predicted choline kinase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 71893920 Common - hypothetical protein MHJ_0571 9 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 71893516 Common nifS nitrogen fixation protein MHJ_0160 228 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 71893377 Common - putative ABC transporter ATP-binding protein MHJ_0018 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 71893432 Common rpsL 30S ribosomal protein S12 MHJ_0073 238 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 71893527 Common secY preprotein translocase subunit SecY MHJ_0171 216 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 71893532 Common rpsH 30S ribosomal protein S8 MHJ_0176 244 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 71893722 Pathogen - hypothetical protein MHJ_0369 3 None None None 71893710 Common - putative ABC transporter ATP-binding protein MHJ_0357 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 71893582 Common - putative ribose ABC transporter MHJ_0226 111 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 71893738 Common - putative partial transposase MHJ_0386 11 None None None 71893777 Common tkt transketolase MHJ_0426 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 71893704 Pathogen - hypothetical protein MHJ_0351 1 None None None 71893454 Common trxB thioredoxin reductase MHJ_0095 247 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 71893566 Common oppD-1 oligopeptide ABC transporter ATP-binding protein MHJ_0210 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 71893795 Pathogen - hypothetical protein MHJ_0444 1 None None None 161611223 Common rpmI 50S ribosomal protein L35 MHJ_0120 103 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 161611219 Common nadD putative nicotinate-nucleotide adenylyltransferase MHJ_0473 192 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 71893622 Common pheT phenylalanyl-tRNA synthetase subunit beta MHJ_0266 117 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 71893501 Common tig trigger factor MHJ_0145 208 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 71893934 Common infB translation initiation factor IF-2 MHJ_0585 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 71893607 Common tmk thymidylate kinase MHJ_0251 228 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 71893404 Pathogen atpF ATP synthase subunit B MHJ_0045 2 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 71893635 Pathogen - hypothetical protein MHJ_0279 1 None None None 71893977 Common - putative ABC transporter ATP-binding - Pr2 - like MHJ_0629 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 71893880 Common gyrA DNA gyrase subunit A MHJ_0529 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 71893602 Common lplA lipoate-protein ligase A MHJ_0246 72 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 71893763 Pathogen - hypothetical protein MHJ_0412 1 None None None 71893617 Common smpB SsrA-binding protein MHJ_0261 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 71893637 Common - hypothetical protein MHJ_0281 3 None None None 71893829 Pathogen - hypothetical protein MHJ_0478 1 None None None 71893411 Common tsf elongation factor Ts MHJ_0052 215 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 71893970 Pathogen - hypothetical protein MHJ_0621 2 None None None 71893610 Common hpt hypoxanthine-guanine phosphoribosyltransferase MHJ_0254 150 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 71893987 Pathogen - hypothetical protein MHJ_0639 1 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 71893900 Common ktrB potassium uptake protein MHJ_0549 86 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 71893696 Pathogen - hypothetical protein MHJ_0343 1 None None None 71893812 Common pepA leucyl aminopeptidase MHJ_0461 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 71893902 Common - hypothetical protein MHJ_0551 10 None None None 71893843 Common - putative ISMHp1 transposase MHJ_0492 31 COG5421 COG5421, Transposase DNA replication, recombination, and repair 71893745 Pathogen - hypothetical protein MHJ_0393 1 None None None 71893676 Pathogen - hypothetical protein MHJ_0322 1 None None None 71893784 Common - hypothetical protein MHJ_0433 109 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 71893967 Common rpoB DNA-directed RNA polymerase subunit beta MHJ_0618 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 71893818 Pathogen - hypothetical protein MHJ_0467 2 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 71893990 Common - hypothetical protein MHJ_0642 69 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 71893449 Pathogen - hypothetical protein MHJ_0090 1 None None None 71893719 Common - putative ABC transport permease protein MHJ_0366 143 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 71893381 Common sipS signal peptidase I MHJ_0022 127 COG4959 TraF, Type IV secretory pathway, protease TraF Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 71893960 Common ptsH phosphocarrier protein HPr MHJ_0611 117 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 71893584 Common - putative myo-inositol 2-dehydrogenase MHJ_0228 183 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 71893461 Pathogen - putative protein P102 MHJ_0104 1 None None None 71893851 Common oppC oligopeptide transport system permease protein MHJ_0500 200 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 71894020 Pathogen - hypothetical protein MHJ_0672 1 None None None 71893899 Common ktrA potassium uptake protein MHJ_0548 143 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 71893951 Pathogen - hypothetical protein MHJ_0602 1 None None None 71893979 Common - putative 5'-nucleotidase precursor MHJ_0631 131 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 71893442 Common rbgA ribosomal biogenesis GTPase MHJ_0083 86 COG1161 COG1161, Predicted GTPases General function prediction only 71893805 Common napA neutrophil activating factor MHJ_0454 30 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 71893553 Common alaS alanyl-tRNA synthetase MHJ_0197 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893649 Pathogen - hypothetical protein MHJ_0293 1 None None None 71893830 Pathogen - hypothetical protein MHJ_0479 2 None None None 71893917 Common - hypothetical protein MHJ_0568 217 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 71893788 Pathogen - hypothetical protein MHJ_0437 2 None None None 71894015 Common greA transcription elongation factor MHJ_0667 203 COG0782 GreA, Transcription elongation factor Transcription 71893958 Common - putative sugar ABC transporter permease protein MHJ_0609 106 COG1079 COG1079, Uncharacterized ABC-type transport system, permease component General function prediction only 71893393 Common cls cardiolipin synthetase MHJ_0034 141 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 71893640 Common ychF translation-associated GTPase MHJ_0284 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 71893835 Common mgtE putative MG2+ transport protein MHJ_0484 175 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 71893892 Pathogen - hypothetical protein MHJ_0541 2 None None None 71893942 Common rnhB ribonuclease HII MHJ_0593 19 COG1039 RnhC, Ribonuclease HIII DNA replication, recombination, and repair 71893578 Common - putative myo-inositol 2-dehydrogenase MHJ_0222 178 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 71893571 Common nrdE ribonucleotide-diphosphate reductase subunit alpha MHJ_0215 220 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 71893872 Pathogen - hypothetical protein MHJ_0521 1 None None None 71893470 Pathogen - hypothetical protein MHJ_0113 1 None None None 71893651 Common ugpQ glycerophosphoryl diester phosphodiesterase MHJ_0295 129 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 71893682 Pathogen - hypothetical protein MHJ_0328 1 None None None 71893591 Common aspS aspartyl-tRNA synthetase MHJ_0235 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893797 Common - GTPase EngB MHJ_0446 197 COG0218 COG0218, Predicted GTPase General function prediction only 71894002 Common prsA ribose-phosphate pyrophosphokinase MHJ_0654 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 71894019 Common valS valyl-tRNA synthetase MHJ_0671 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 71893407 Common atpG ATP synthase gamma chain MHJ_0048 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 71894009 Pathogen - hypothetical protein MHJ_0661 1 None None None 71893691 Common - hypothetical protein MHJ_0338 9 None None None 71893514 Common - hypothetical protein MHJ_0158 9 COG0781 NusB, Transcription termination factor Transcription