Xanthomonas oryzae pv. oryzae KACC10331, complete genome NC_006834 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 58580575 Common ppa inorganic pyrophosphatase XOO0952 185 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 58580770 Common - putative transposase XOO1147 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583571 Common - nicotinamide-nucleotide adenylyltransferase XOO3948 64 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 58582744 Common xsa xylosidase; arabinosidase XOO3121 27 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 58582269 Common cycM cytochrome C552 XOO2646 62 COG2863 COG2863, Cytochrome c553 Energy production and conversion 58584156 Common hrpB ATP-dependent RNA helicase XOO4533 132 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 58580068 Common - hypothetical protein XOO0445 3 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58583460 Common - hypothetical protein XOO3837 209 COG0313 COG0313, Predicted methyltransferases General function prediction only 58583015 Pathogen - hypothetical protein XOO3392 2 None None None 58582509 Common greA transcription elongation factor GreA XOO2886 204 COG0782 GreA, Transcription elongation factor Transcription 58582928 Common tldD TldD XOO3305 170 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 58580652 Common - IS1404 transposase XOO1029 78 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583522 Common - putative ISXo8 transposase XOO3899 26 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582077 Common nth endonuclease III XOO2454 239 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 58583898 Common - hypothetical protein XOO4275 12 None None None 58579680 Common ygiY two-component system sensor protein XOO0057 4 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 122879363 Common - quinone oxidoreductase XOO4528 136 COG2130 COG2130, Putative NADP-dependent oxidoreductases General function prediction only 58580211 Common - hypothetical protein XOO0588 61 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 122879013 Common - putative transposase XOO0374 47 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580031 Pathogen - hypothetical protein XOO0408 1 None None None 121632141 Common - IS1404 transposase XOO4950 61 None None None 122879192 Common tnpX1 IS1113 transposase XOO2471 87 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582758 Common pepQ proline dipeptidase XOO3135 248 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 122879167 Common - aldehyde dehydrogenase XOO2240 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 58581737 Common - TonB-like protein XOO2114 35 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 58580945 Pathogen - hypothetical protein XOO1322 1 None None None 122879197 Common - IS1478 transposase XOO2517 30 None None None 58581718 Common - putative transposase XOO2095 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58581246 Common rpsT 30S ribosomal protein S20 XOO1623 146 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 58580059 Common - hypothetical protein XOO0436 54 COG3237 COG3237, Uncharacterized protein conserved in bacteria Function unknown 58583377 Common - hypothetical protein XOO3754 51 COG3762 COG3762, Predicted membrane protein Function unknown 58582818 Common pilE1 type IV pilin XOO3195 24 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 58579990 Common - putative ISXo8 transposase XOO0367 12 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582775 Common - hypothetical protein XOO3152 3 None None None 58583216 Common rplJ 50S ribosomal protein L10 XOO3593 207 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 58584078 Common - transcriptional regulator marR family XOO4455 112 COG1846 MarR, Transcriptional regulators Transcription 58583674 Common - N-acetyltransferase XOO4051 66 COG0456 RimI, Acetyltransferases General function prediction only 58583246 Common - extracellular protease XOO3623 9 None None None 122879240 Common cysG siroheme synthase XOO3102 152 COG1648 CysG, Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) Coenzyme metabolism 58581050 Common pyrB aspartate carbamoyltransferase catalytic subunit XOO1427 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 122879083 Common - hypothetical protein XOO1293 3 None None None 122879009 Common - two-component system sensor protein XOO0336 221 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 58581492 Common deoD 5'-methylthioadenosine phosphorylase XOO1869 160 COG0005 Pnp, Purine nucleoside phosphorylase Nucleotide transport and metabolism 58583963 Common smeS two-component system sensor protein XOO4340 213 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 58583531 Common fyuA TonB-dependent receptor XOO3908 3 None None None 58582169 Common ftsK cell division protein XOO2546 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 58583736 Common - hypothetical protein XOO4113 7 COG4402 COG4402, Uncharacterized protein conserved in bacteria Function unknown 58583691 Common phaF putative monovalent cation/H+ antiporter subunit F XOO4068 78 COG2212 MnhF, Multisubunit Na+/H+ antiporter, MnhF subunit Inorganic ion transport and metabolism 161898975 Common cycJ cytochrome c-type biogenesis protein CcmE XOO3007 93 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 58582524 Common - enoyl-CoA hydratase XOO2901 137 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 161899016 Common phdB dihydrolipoamide acetyltransferase XOO0720 196 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 58582232 Common fliN flagellar protein XOO2609 124 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 58583701 Common pdhB pyruvate dehydrogenase E1 beta subunit XOO4078 154 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 58581776 Common cycZ ABC transporter heme permease XOO2153 116 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 58583106 Common - putative transmembrane protein XOO3483 12 COG3521 COG3521, Uncharacterized protein conserved in bacteria Function unknown 58583794 Pathogen - ISxac1 transposase XOO4171 1 None None None 58580336 Common abc ABC transporter ATP-binding protein XOO0713 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 58582122 Common phy putative phytase precursor XOO2499 2 COG4247 Phy, 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) Lipid metabolism 58582520 Pathogen - hypothetical protein XOO2897 1 None None None 58581615 Common fhuA iron receptor XOO1992 97 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 58584170 Common - hypothetical protein XOO4547 46 COG3162 COG3162, Predicted membrane protein Function unknown 58582684 Pathogen - hypothetical protein XOO3061 2 None None None 122879200 Common flhF flagellar biosynthesis regulator FlhF XOO2619 247 COG1419 FlhF, Flagellar GTP-binding protein Cell motility and secretion 58580480 Common xpsD general secretion pathway protein D XOO0857 140 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 58583826 Common - hypothetical protein XOO4203 8 None None None 58584219 Common - hypothetical protein XOO4596 16 None None None 58581305 Pathogen - hypothetical protein XOO1682 1 None None None 122879269 Common - hypothetical protein XOO3529 6 COG3818 COG3818, Predicted acetyltransferase, GNAT superfamily General function prediction only 122879088 Common cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase XOO1350 129 COG2087 CobU, Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase Coenzyme metabolism 58582557 Common - endolysin XOO2934 11 COG4678 COG4678, Muramidase (phage lambda lysozyme) Carbohydrate transport and metabolism 58580898 Common - hypothetical protein XOO1275 40 COG4099 COG4099, Predicted peptidase General function prediction only 58580591 Common - putative transposase XOO0968 42 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582350 Common - aminoacyl-tRNA synthetase:glutamyl homolog XOO2727 243 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 58580900 Common ptsI phosphotransferase system enzyme I XOO1277 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 58580166 Common - hypothetical protein XOO0543 16 None None None 58581672 Common - hypothetical protein XOO2049 4 None None None 58580938 Common - transposase XOO1315 32 None None None 58583457 Common - hypothetical protein XOO3834 129 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 58579729 Common - possible transposase XOO0106 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582054 Common - hypothetical protein XOO2431 35 COG5587 COG5587, Uncharacterized conserved protein Function unknown 58582666 Common - hypothetical protein XOO3043 60 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 58581059 Common murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase XOO1436 210 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 58579787 Common - hypothetical protein XOO0164 13 COG2161 StbD, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 58582566 Common aarF ubiquinone biosynthesis protein XOO2943 185 COG0661 AarF, Predicted unusual protein kinase General function prediction only 58582623 Common - cytochrome C XOO3000 10 None None None 122879241 Common - peptidase XOO3120 35 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 58583972 Common ynfM MFS transporter XOO4349 68 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58580047 Common phoQ two-component system sensor protein XOO0424 187 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58583495 Pathogen - hypothetical protein XOO3872 1 None None None 58583434 Pathogen - hypothetical protein XOO3811 1 None None None 58583118 Common - hypothetical protein XOO3495 40 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 58580485 Common - conserved hypothetical protein 1 XOO0862 5 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 58581605 Common pru protein U XOO1982 20 COG5430 COG5430, Uncharacterized secreted protein Function unknown 58584161 Common - hypothetical protein XOO4538 45 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 58584134 Common yehZ ABC transporter amino acid permease XOO4511 134 COG1732 OpuBC, Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) Cell envelope biogenesis, outer membrane 122879353 Common xylB xylosidase; arabinosidase XOO4422 41 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 58580909 Common - hypothetical protein XOO1286 38 COG1934 COG1934, Uncharacterized protein conserved in bacteria Function unknown 58581722 Common - putative transposase XOO2099 42 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580200 Pathogen - hypothetical protein XOO0577 1 None None None 58580685 Common moaD molybdopterin-converting factor chain 1 XOO1062 37 COG1977 MoaD, Molybdopterin converting factor, small subunit Coenzyme metabolism 58581685 Common nodI ABC transporter ATP-binding protein XOO2062 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 58581711 Common - transposase XOO2088 31 None None None 58581320 Common - phage-related baseplate protein XOO1697 31 COG4540 gpV, Phage P2 baseplate assembly protein gpV General function prediction only 58584210 Common - hypothetical protein XOO4587 174 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 58580042 Pathogen - hypothetical protein XOO0419 1 None None None 58580219 Common htrB lipid A biosynthesis lauroyl acyltransferase XOO0596 118 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 58582203 Common flgL flagellar hook-associated protein FlgL XOO2580 109 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 58580207 Common - hypothetical protein XOO0584 45 COG1652 XkdP, Uncharacterized protein containing LysM domain Function unknown 58583518 Common tnp putative truncated transposase XOO3895 53 None None None 58581016 Common - transposase XOO1393 30 None None None 58581413 Common mazG nucleoside triphosphate pyrophosphohydrolase XOO1790 157 COG3956 COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain General function prediction only 58582679 Common - transposase XOO3056 27 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583549 Common - IS1404 transposase XOO3926 62 None None None 58581147 Common - hypothetical protein XOO1524 119 COG0431 COG0431, Predicted flavoprotein General function prediction only 58583273 Common - putative ISXo8 transposase XOO3650 10 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582255 Common - Glutamate synthase domain 2 XOO2632 2 None None None 58583032 Common cysK cysteine synthase XOO3409 220 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 58579986 Pathogen - IS1389 transposase XOO0363 1 None None None 58583222 Common tufB elongation factor Tu XOO3599 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 58583317 Pathogen - hypothetical protein XOO3694 2 None None None 58584248 Common - oxidoreductase XOO4625 137 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 122879074 Common - hypothetical protein XOO1179 82 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 58583869 Common - ISxac1 transposase XOO4246 15 None None None 58581344 Common - response regulator XOO1721 100 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 122879317 Common rpe ribulose-phosphate 3-epimerase XOO4052 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 58583140 Common - hypothetical protein XOO3517 47 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 58581004 Common hsp90xc Hsp90xo protein XOO1381 149 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 58582825 Common fimT pre-pilin like leader sequence XOO3202 15 COG4970 FimT, Tfp pilus assembly protein FimT Cell motility and secretion / Intracellular trafficking and secretion 58582767 Common mutY A/G-specific adenine glycosylase XOO3144 220 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 58582999 Pathogen - hypothetical protein XOO3376 2 None None None 58583504 Common yihA GTPase EngB XOO3881 178 COG0218 COG0218, Predicted GTPase General function prediction only 122879111 Common menG ribonuclease activity regulator protein RraA XOO1555 79 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 58582670 Common - hypothetical protein XOO3047 48 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 58580476 Common xpsK general secretion pathway protein K XOO0853 20 COG3156 PulK, Type II secretory pathway, component PulK Intracellular trafficking and secretion 58580818 Common modA molybdate-binding periplasmic protein; permease XOO1195 146 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 58581294 Common - radical activating enzyme XOO1671 157 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 58580719 Common - hypothetical protein XOO1096 16 COG3930 COG3930, Uncharacterized protein conserved in bacteria Function unknown 58582587 Pathogen - hypothetical protein XOO2964 1 None None None 58581288 Common tolQ TolQ XOO1665 148 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 58583442 Common - peptidase XOO3819 188 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 58583089 Common - hypothetical protein XOO3466 33 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 58581396 Common - putative transposase XOO1773 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58584035 Common - hydrolase XOO4412 18 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 58583192 Common rpsN 30S ribosomal protein S14 XOO3569 201 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 58582143 Common - ISxac1 transposase XOO2520 15 None None None 58582359 Common yjeS iron-sulfur cluster-binding protein XOO2736 133 COG1600 COG1600, Uncharacterized Fe-S protein Energy production and conversion 58584177 Common - hypothetical protein XOO4554 57 COG3540 PhoD, Phosphodiesterase/alkaline phosphatase D Inorganic ion transport and metabolism 58579634 Common exbD2 biopolymer transport ExbD2 protein XOO0011 121 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 58584235 Common - IS1478 transposase XOO4612 29 None None None 161899000 Common lig2 ATP-dependent DNA ligase XOO1875 104 COG1793 CDC9, ATP-dependent DNA ligase DNA replication, recombination, and repair 58580612 Common - transposase XOO0989 32 None None None 58580173 Common - transcriptional regulator pbsX family XOO0550 5 COG1396 HipB, Predicted transcriptional regulators Transcription 58582708 Common - transposase XOO3085 53 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580431 Common - DNA-binding protein XOO0808 21 COG2916 Hns, DNA-binding protein H-NS General function prediction only 58582655 Common virA VirA-like protein XOO3032 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58582045 Pathogen paiB transcriptional regulator protein Pai2 XOO2422 1 COG2808 PaiB, Transcriptional regulator Transcription 58579935 Common - acetyltransferase XOO0312 28 COG0456 RimI, Acetyltransferases General function prediction only 58581204 Common - transposase XOO1581 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58581027 Common ynhD ABC transporter ATP-binding protein XOO1404 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 58582236 Common fliR flagellar biosynthetic protein XOO2613 127 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 58582125 Common - possible transposase XOO2502 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583039 Common - hypothetical protein XOO3416 5 None None None 58583300 Common cvpA colicin V production protein XOO3677 96 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 58583201 Common rplV 50S ribosomal protein L22 XOO3578 227 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 58581583 Common - IS1478 transposase XOO1960 10 None None None 58583091 Common - hypothetical protein XOO3468 7 COG4709 COG4709, Predicted membrane protein Function unknown 58580402 Common smtA hypothetical protein XOO0779 41 None None None 58580253 Common - hypothetical protein XOO0630 9 None None None 58581525 Common - hypothetical protein XOO1902 4 None None None 58583236 Common acyP acylphosphatase XOO3613 7 COG1254 AcyP, Acylphosphatases Energy production and conversion 58581366 Common draG dinitrogenase reductase activationg glycohydrolase XOO1743 82 COG1397 DraG, ADP-ribosylglycohydrolase Posttranslational modification, protein turnover, chaperones 58581596 Common frr ribosome recycling factor XOO1973 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 58581349 Common - putative transposase XOO1726 30 None None None 58583922 Common ftsX cell division protein XOO4299 80 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 58579977 Common - IS1478 transposase XOO0354 29 None None None 121632059 Common - hypothetical protein XOO4750 5 None None None 58583510 Common betT high-affinity choline transport XOO3887 25 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 58580777 Common gltA type II citrate synthase XOO1154 194 COG0372 GltA, Citrate synthase Energy production and conversion 58581128 Common - transcriptional regulator fur family XOO1505 106 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 122879283 Common ppk polyphosphate kinase XOO3668 161 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 58579781 Common - hypothetical protein XOO0158 17 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 58580152 Pathogen - transmembrane protein XOO0529 1 None None None 58580539 Common pepN aminopeptidase N XOO0916 156 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 58583770 Common - transposase XOO4147 30 None None None 58582711 Common - hypothetical protein XOO3088 9 None None None 58582046 Common yadF carbonic anhydrase XOO2423 133 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 58582034 Common hisC aminotransferase XOO2411 2 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 58583124 Pathogen - hypothetical protein XOO3501 3 None None None 58583469 Common kdpA potassium-transporting ATPase subunit A XOO3846 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 58579956 Common ynaJ cation symporter XOO0333 87 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 58582732 Common - transposase XOO3109 31 None None None 58581923 Common comA competence protein XOO2300 132 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 58580926 Common - hypothetical protein XOO1303 87 COG3178 COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases General function prediction only 58583625 Common - prolyl oligopeptidase XOO4002 113 COG1505 COG1505, Serine proteases of the peptidase family S9A Amino acid transport and metabolism 122878986 Common - putative ISXo8 transposase XOO0121 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 122879049 Common proS prolyl-tRNA synthetase XOO0809 235 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 58582639 Common - Cation/multidrug efflux pump XOO3016 173 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 58584183 Common - transposase XOO4560 52 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583083 Common - hypothetical protein XOO3460 9 None None None 58584116 Common - hypothetical protein XOO4493 114 COG1881 COG1881, Phospholipid-binding protein General function prediction only 58580397 Pathogen uptD outer membran protein XOO0774 2 None None None 58582385 Common petA ubiquinol cytochrome C oxidoreductase, iron-sulfur subunit XOO2762 92 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 161899020 Common prmA ribosomal protein L11 methyltransferase XOO0552 161 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 58580868 Common pdxH pyridoxamine 5'-phosphate oxidase XOO1245 132 COG0259 PdxH, Pyridoxamine-phosphate oxidase Coenzyme metabolism 58581802 Common cmk cytidylate kinase XOO2179 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 58582718 Common - putative transposase XOO3095 5 None None None 58583307 Common tdh L-threonine 3-dehydrogenase XOO3684 206 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 121632070 Common - hypothetical protein XOO4762 10 None None None 58583215 Common rplL 50S ribosomal protein L7/L12 XOO3592 214 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 58579764 Common - IS1478 transposase XOO0141 21 None None None 58583012 Pathogen - acetyltransferase XOO3389 1 None None None 58580467 Common - protease XOO0844 16 None None None 58583071 Common - hypothetical protein XOO3448 20 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 58581705 Common - hypothetical protein XOO2082 46 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580812 Common - Signal transduction histidine kinase XOO1189 199 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58581457 Common - ISxac3 transposase XOO1834 20 None None None 58580507 Common trpE hypothetical protein XOO0884 222 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 58581836 Common - hypothetical protein XOO2213 5 COG3151 COG3151, Uncharacterized protein conserved in bacteria Function unknown 58583930 Common - putative periplasmic protein XOO4307 94 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 58581696 Common metH2 5-methyltetrahydrofolate-homocysteine methyltransferase XOO2073 166 COG1410 MetH, Methionine synthase I, cobalamin-binding domain Amino acid transport and metabolism 122879185 Common hutU urocanate hydratase XOO2400 97 COG2987 HutU, Urocanate hydratase Amino acid transport and metabolism 58583600 Common - hypothetical protein XOO3977 4 None None None 58583715 Pathogen - hypothetical protein XOO4092 2 None None None 58581849 Common - putative transposase XOO2226 36 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879274 Common rplD 50S ribosomal protein L4 XOO3582 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 58583449 Common murG N-acetylglucosaminyl transferase XOO3826 207 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 122879310 Common hrpM glucosyltransferase MdoH XOO4011 64 COG2943 MdoH, Membrane glycosyltransferase Cell envelope biogenesis, outer membrane 58581807 Common rfb303 lipopolysaccharide core biosynthesis protein XOO2184 73 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 58581179 Common - beta-lactamase XOO1556 149 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 58581182 Common baeR two-component system regulatory protein XOO1559 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58582610 Common bioC biotin synthesis protein XOO2987 116 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 58582968 Common - hypothetical protein XOO3345 4 None None None 58580391 Pathogen - hypothetical protein XOO0768 1 None None None 58583958 Common sflA NADH-dependent FMN reductase XOO4335 53 COG0431 COG0431, Predicted flavoprotein General function prediction only 58583850 Common - putative transposase XOO4227 41 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 121632055 Pathogen - hypothetical protein XOO4746 1 None None None 58583360 Common - transposase XOO3737 32 None None None 58582726 Common pedG putative FAD-dependent monooxygenase XOO3103 12 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 58583180 Common rplQ 50S ribosomal protein L17 XOO3557 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 58580626 Common - transposase XOO1003 32 None None None 58582219 Common - ring hydroxylating dioxygenase alpha-subunit XOO2596 93 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 58582695 Common rluC pseudouridylate synthase XOO3072 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 58581538 Common - hypothetical protein XOO1915 63 COG3496 COG3496, Uncharacterized conserved protein Function unknown 58583655 Common corA magnesium and cobalt transport protein XOO4032 139 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 58582701 Common - hypothetical protein XOO3078 109 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 122879031 Common - D-tyrosyl-tRNA deacylase XOO0597 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 122879341 Pathogen - putative dehydratase XOO4317 2 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 122879175 Common celD glucan 1,4-beta-glucosidase XOO2356 107 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 122879054 Common fyuA TonB-dependent receptor XOO0897 68 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 122879373 Common - hypothetical protein XOO4627 8 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 58582634 Common cycL C-type cytochrome biogenesis protein XOO3011 93 COG3088 CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes Posttranslational modification, protein turnover, chaperones 58584130 Common hipA HipA XOO4507 69 COG3550 HipA, Uncharacterized protein related to capsule biosynthesis enzymes General function prediction only 58581231 Common - Transposase and inactivated derivatives XOO1608 6 None None None 58584176 Common hetI HetI XOO4553 22 COG2091 Sfp, Phosphopantetheinyl transferase Coenzyme metabolism 122879132 Common - leucin rich protein XOO1762 15 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 58579831 Common - IS1478 transposase XOO0208 29 None None None 58581533 Common - hypothetical protein XOO1910 94 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 122879254 Common cysI NADPH-sulfite reductase iron-sulfur protein XOO3400 148 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 58579755 Common - hypothetical protein XOO0132 12 None None None 58582387 Common dnrO repressor XOO2764 15 COG2378 COG2378, Predicted transcriptional regulator Transcription 58581909 Common - RhsD protein XOO2286 69 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 58580549 Common kdtA 3-deoxy-D-manno-octulosonic-acid transferase XOO0926 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 58580960 Common clpB ATP-dependent Clp protease subunit XOO1337 220 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 58581158 Common - alcohol dehydrogenase XOO1535 214 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 58584104 Common sodC2 superoxide dismutase XOO4481 86 COG2032 SodC, Cu/Zn superoxide dismutase Inorganic ion transport and metabolism 122879002 Common blc outer membrane lipoprotein; lipocalin XOO0274 59 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 58581368 Common gshB glutathione synthetase XOO1745 115 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 58580449 Common - SAM-dependent methyltransferase XOO0826 16 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 58580683 Common - hypothetical protein XOO1060 15 COG4994 COG4994, Uncharacterized protein conserved in bacteria Function unknown 58583333 Common - two-component system regulatory protein XOO3710 220 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 58583490 Common - alcohol dehydrogenase C XOO3867 201 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 122879142 Common acvB virulence protein XOO1906 19 COG3946 VirJ, Type IV secretory pathway, VirJ component Intracellular trafficking and secretion 58581173 Common deaD ATP-dependent RNA helicase XOO1550 234 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 58581972 Common - hypothetical protein XOO2349 99 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 58584259 Common - putative inner membrane protein translocase component YidC XOO4636 211 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 58582188 Pathogen - hypothetical protein XOO2565 1 None None None 122879326 Common mtrC membrane fusion protein precursor XOO4188 165 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 58580125 Common wbnF nucleotide sugar epimerase XOO0502 232 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 58580404 Common wxoC putative glycosyl transferase XOO0781 39 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 58583256 Common pntA pyridine nucleotide transhydrogenase XOO3633 155 COG3288 PntA, NAD/NADP transhydrogenase alpha subunit Energy production and conversion 58582952 Common leuS leucyl-tRNA synthetase XOO3329 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 58581497 Common lhr2 helicase-related protein XOO1874 155 COG1201 Lhr, Lhr-like helicases General function prediction only 58581885 Common hisI bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein XOO2262 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 58582539 Common gbpR galactose-binding protein regulator XOO2916 182 COG0583 LysR, Transcriptional regulator Transcription 58583000 Common - IS1478 transposase XOO3377 29 None None None 58582328 Common efP elongation factor P XOO2705 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 58580293 Common - DNA polymerase related protein XOO0670 152 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 58581476 Common lepB signal peptidase I XOO1853 208 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 58582983 Common - Transposase and inactivated derivatives, IS30 family XOO3360 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58580235 Pathogen - hypothetical protein XOO0612 1 None None None 58581036 Common - peptidase XOO1413 32 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 58579864 Common tdk thymidine kinase XOO0241 88 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 58582195 Common flgE flagellar hook protein FlgE XOO2572 126 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 58580279 Pathogen algR transcriptional regulator protein XOO0656 1 None None None 58581356 Common pqqE pyrroloquinoline quinone biosynthesis protein PqqE XOO1733 154 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 58580289 Common - hypothetical protein XOO0666 10 None None None 122879170 Common - Transposase and inactivated derivatives XOO2272 52 None None None 58581100 Common creC two-component system sensor protein XOO1477 207 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58583332 Common torS two-component system sensor protein XOO3709 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 122879126 Common - site-specific DNA-methyltransferase XOO1717 88 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 122879359 Common - hypothetical protein XOO4497 89 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 58581238 Common tesB acyl-CoA thiolesterase II XOO1615 77 COG1946 TesB, Acyl-CoA thioesterase Lipid metabolism 58582104 Common secF preprotein translocase subunit SecF XOO2481 209 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 58583534 Common hmsH HmsH XOO3911 20 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 58583908 Common - hypothetical protein XOO4285 20 None None None 58583834 Common - methyltransferase XOO4211 93 COG2189 COG2189, Adenine specific DNA methylase Mod DNA replication, recombination, and repair 58584023 Common gspE general secretory pathway related protein XOO4400 211 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 58581599 Common tsf elongation factor Ts XOO1976 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 58581621 Common yybA transcriptional regulator marR family XOO1998 54 COG1846 MarR, Transcriptional regulators Transcription 58582372 Common - transposase XOO2749 32 None None None 122878992 Common - trehalose synthase XOO0196 174 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 58580310 Common motB flagellar motor protein MotB XOO0687 110 COG1360 MotB, Flagellar motor protein Cell motility and secretion 122879339 Common - hypothetical protein XOO4306 50 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 58582457 Common - hypothetical protein XOO2834 3 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 58581520 Common catA cation transport protein XOO1897 125 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 122879303 Common xphIM methyltransferase homolog M.XphI XOO3951 33 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 58582894 Common greB transcription elongation factor GreB XOO3271 177 COG0782 GreA, Transcription elongation factor Transcription 58584075 Common - hypothetical protein XOO4452 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58580573 Common btuB TonB-dependent receptor XOO0950 108 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 58581698 Common - transcriptional regulator XOO2075 193 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 58581076 Common - VGR-related protein XOO1453 60 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 161898959 Common rhlB ATP-dependent RNA helicase RhlB XOO4301 238 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 58584167 Common acs acetyl-CoA synthetase XOO4544 215 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 121632125 Common - 30S ribosomal protein S7 YXOOp09 248 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 58583593 Common mreB rod shape-determining protein XOO3970 234 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 58582901 Common dcd deoxycytidine triphosphate deaminase XOO3278 149 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 58580009 Common - transcriptional regulator XOO0386 73 COG1476 COG1476, Predicted transcriptional regulators Transcription 58582179 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase XOO2556 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 58583489 Common - esterase XOO3866 101 COG0627 COG0627, Predicted esterase General function prediction only 58581098 Common - putative transposase XOO1475 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583781 Common clp cAMP-regulatory protein XOO4158 122 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 122879350 Pathogen - hypothetical protein XOO4405 2 None None None 58581449 Common - hypothetical protein XOO1826 113 COG2353 COG2353, Uncharacterized conserved protein Function unknown 58583104 Common - hypothetical protein XOO3481 50 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 58583297 Common - hypothetical protein XOO3674 47 COG2833 COG2833, Uncharacterized protein conserved in bacteria Function unknown 58582400 Common potG ATP-binding component of putrescine transport system XOO2777 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 58580763 Common - coproporphyrinogen III oxidase XOO1140 205 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 58581767 Common - oxidoreductase XOO2144 200 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 121632043 Common - glycosyltransferase XOO4733 48 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 58580290 Common - hypothetical protein XOO0667 86 COG3384 COG3384, Uncharacterized conserved protein Function unknown 58582542 Common dgoA 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase XOO2919 109 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 58581141 Pathogen - hypothetical protein XOO1518 1 None None None 58582027 Common - IS1404 transposase XOO2404 60 None None None 58583128 Common - similar to Sulfatase modifying factor 1 precursor (C-alpha-formyglycine-generating enzyme 1) XOO3505 84 COG1262 COG1262, Uncharacterized conserved protein Function unknown 58582438 Common - hypothetical protein XOO2815 6 None None None 58580241 Common - transposase XOO0618 52 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581547 Common metG methionyl-tRNA synthetase XOO1924 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 58582009 Common aroA 3-phosphoshikimate 1-carboxyvinyltransferase XOO2386 230 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 58582210 Common rpoN RNA polymerase sigma-54 factor XOO2587 145 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 58581657 Common tyrA prephenate dehydrogenase XOO2034 55 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 58580540 Common - IS1595 transposase XOO0917 27 None None None 58582344 Common cspA major cold shock protein XOO2721 174 COG1278 CspC, Cold shock proteins Transcription 58579782 Common - hypothetical protein XOO0159 20 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 58582051 Common - kynureninase XOO2428 95 COG3844 COG3844, Kynureninase Amino acid transport and metabolism 58581211 Common - putative integral membrane protein XOO1588 77 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 58582036 Common smc chromosome segregation protein XOO2413 188 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 58580358 Pathogen - hypothetical protein XOO0735 1 COG2246 COG2246, Predicted membrane protein Function unknown 58581855 Common - hypothetical protein XOO2232 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58582312 Common - general stress protein XOO2689 36 COG3871 COG3871, Uncharacterized stress protein (general stress protein 26) General function prediction only 58580299 Common yadG ABC transporter ATP-binding protein XOO0676 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 58581822 Pathogen - hypothetical protein XOO2199 4 None None None 58582572 Common hflB cell division protein XOO2949 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 58580994 Common xynB xylanase XOO1371 36 COG0657 Aes, Esterase/lipase Lipid metabolism 58580329 Pathogen - oxidoreductase XOO0706 1 COG3967 DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) Cell envelope biogenesis, outer membrane 122879120 Common - IS1404 transposase XOO1643 120 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580882 Common - peptidase XOO1259 14 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 58584001 Common accD acyl-CoA carboxyltransferase beta chain XOO4378 143 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 58584160 Common ucpA oxidoreductase XOO4537 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 121632146 Pathogen - hypothetical protein YXOOp18 1 None None None 58581426 Common - hypothetical protein XOO1803 39 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 58580820 Common - endonuclease XOO1197 21 None None None 58581870 Common thrC threonine synthase XOO2247 175 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 58581987 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase XOO2364 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 58579748 Common - putative transposase XOO0125 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580555 Common - transposase XOO0932 17 None None None 58583737 Common yiaA membrane protein XOO4114 12 COG4682 COG4682, Predicted membrane protein Function unknown 58579775 Common - transposase XOO0152 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58579961 Common kdgR transcriptional regulator XOO0338 101 COG1414 IclR, Transcriptional regulator Transcription 122879138 Common - histidine kinase/response regulator hybrid protein XOO1828 221 COG3292 COG3292, Predicted periplasmic ligand-binding sensor domain Signal transduction mechanisms 58583064 Common - hypothetical protein XOO3441 29 COG4544 COG4544, Uncharacterized conserved protein Function unknown 58583342 Common - integral membrane protein XOO3719 26 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 58581152 Common - hypothetical protein XOO1529 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58584140 Common - hypothetical protein XOO4517 74 COG2013 COG2013, Uncharacterized conserved protein Function unknown 58582015 Common - hypothetical protein XOO2392 6 None None None 58580417 Common rmlC dTDP-4-dehydrorhamnose 3,5-epimerase XOO0794 167 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 58580827 Common - possible transposase XOO1204 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581274 Common plcN phospholipase C XOO1651 24 COG3511 PlcC, Phospholipase C Cell envelope biogenesis, outer membrane 58580248 Common - hypothetical protein XOO0625 10 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 58580672 Common - hypothetical protein XOO1049 4 None None None 58583862 Common hemF coproporphyrinogen III oxidase XOO4239 113 COG0408 HemF, Coproporphyrinogen III oxidase Coenzyme metabolism 58582228 Common fliJ flagellar FliJ protein XOO2605 5 COG2882 FliJ, Flagellar biosynthesis chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 58580061 Common - beta-lactamase related protein XOO0438 45 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 58580597 Common - hypothetical protein XOO0974 10 COG3305 COG3305, Predicted membrane protein Function unknown 58581544 Common - hypothetical protein XOO1921 2 None None None 121632113 Pathogen - hypothetical protein YXOOp01 1 None None None 122879334 Common glnE glutamine synthetase adenylyltransferase XOO4274 119 COG1391 GlnE, Glutamine synthetase adenylyltransferase Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms 58581066 Common - putative ISXo8 transposase XOO1443 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583357 Common pcaH protocatechuate 3,4-dioxygenase beta chain XOO3734 30 COG3384 COG3384, Uncharacterized conserved protein Function unknown 58584008 Common - hypothetical protein XOO4385 15 None None None 58583409 Common - hypothetical protein XOO3786 5 COG1026 COG1026, Predicted Zn-dependent peptidases, insulinase-like General function prediction only 58580054 Common tdk thymidylate kinase XOO0431 136 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 58581960 Common msbA ABC transporter ATP-binding protein XOO2337 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 58583244 Common - extracellular protease XOO3621 27 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 58579685 Pathogen - hypothetical protein XOO0062 2 None None None 58580006 Common czcD heavy metal transporter XOO0383 181 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 58581732 Common - putative transposase XOO2109 34 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582420 Common - two-component system sensor protein XOO2797 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58580513 Pathogen - hypothetical protein XOO0890 1 None None None 58579848 Common - hypothetical protein XOO0225 8 None None None 58583681 Common - hypothetical protein XOO4058 13 COG1432 COG1432, Uncharacterized conserved protein Function unknown 58583985 Common - serine-pyruvate aminotransferase XOO4362 135 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 122879024 Common - two-component system regulatory protein XOO0520 214 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 58583172 Common - hypothetical protein XOO3549 7 None None None 122879276 Common pth peptidyl-tRNA hydrolase XOO3601 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 58581828 Common smf2 manganese transport protein MntH XOO2205 104 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 58581919 Common lpxK tetraacyldisaccharide 4'-kinase XOO2296 127 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 58580611 Common - IS1478 transposase XOO0988 6 None None None 58582379 Common - hypothetical protein XOO2756 7 None None None 58583069 Common - putative transposase XOO3446 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581523 Common nerA GTN reductase XOO1900 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 58580667 Common - possible transposase XOO1044 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579702 Pathogen hpaA HpaA XOO0079 1 None None None 58581953 Common - sensor histidine kinase XOO2330 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 58583068 Common - putative transposase XOO3445 45 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583133 Common - hypothetical protein XOO3510 7 None None None 58582761 Common - oxidoreductase XOO3138 33 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 58582791 Common gumM GumM XOO3168 109 COG1922 WecG, Teichoic acid biosynthesis proteins Cell envelope biogenesis, outer membrane 58579988 Common - IS1404 transposase XOO0365 78 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579946 Common - transposase XOO0323 52 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 121632015 Pathogen - hypothetical protein XOO4700 2 None None None 58581045 Common - hypothetical protein XOO1422 3 None None None 58579715 Pathogen hrpB7 HrpB7 XOO0092 1 None None None 58580703 Pathogen - hypothetical protein XOO1080 1 None None None 58582516 Common - possible transposase XOO2893 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879153 Common dxs 1-deoxy-D-xylulose-5-phosphate synthase XOO2017 219 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 58584192 Common - hypothetical protein XOO4569 30 COG4529 COG4529, Uncharacterized protein conserved in bacteria Function unknown 58580979 Common yceE transport protein XOO1356 20 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58584065 Pathogen - hypothetical protein XOO4442 1 COG4943 COG4943, Predicted signal transduction protein containing sensor and EAL domains Signal transduction mechanisms 58582676 Pathogen - hypothetical protein XOO3053 3 None None None 58582975 Common - putative transposase XOO3352 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58582706 Common - phosphopantetheinyl transferase XOO3083 36 COG2977 EntD, Phosphopantetheinyl transferase component of siderophore synthetase Secondary metabolites biosynthesis, transport, and catabolism 121632065 Pathogen - hypothetical protein XOO4756 1 None None None 58583479 Common ribD riboflavin-specific deaminase; 5-amino-6-uracil reductase XOO3856 227 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 58581378 Common - ISRSO5-transposase protein XOO1755 50 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579926 Common - IS1478 transposase XOO0303 26 None None None 122879067 Common - cellulase S XOO1077 5 None None None 58580089 Common - hypothetical protein XOO0466 69 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 58581969 Common - hypothetical protein XOO2346 3 None None None 58580837 Common - putative transposase XOO1214 45 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581617 Common brf bacterioferritin XOO1994 100 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 122879162 Common - hypothetical protein XOO2163 142 COG1354 COG1354, Uncharacterized conserved protein Function unknown 58582583 Common ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase XOO2960 189 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 58581421 Common - hypothetical protein XOO1798 16 COG3202 COG3202, ATP/ADP translocase Energy production and conversion 58579849 Common - hypothetical protein XOO0226 4 None None None 58580366 Common - hypothetical protein XOO0743 16 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580012 Common natB ABC transporter sodium permease XOO0389 23 COG1668 NatB, ABC-type Na+ efflux pump, permease component Energy production and conversion / Inorganic ion transport and metabolism 58580694 Common moxR methanol dehydrogenase regulator XOO1071 173 COG0714 COG0714, MoxR-like ATPases General function prediction only 58581139 Common - hypothetical protein XOO1516 19 COG3134 COG3134, Predicted outer membrane lipoprotein Function unknown 58581364 Common yoaA ATP-dependent helicase XOO1741 128 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 58581132 Common - hypothetical protein XOO1509 36 COG2839 COG2839, Uncharacterized protein conserved in bacteria Function unknown 58581319 Common - phage-related baseplate protein XOO1696 27 COG3628 COG3628, Phage baseplate assembly protein W General function prediction only 122879218 Common - hypothetical protein XOO2816 4 None None None 58581899 Common - hypothetical 125K protein XOO2276 12 None None None 58583688 Common phaC putative monovalent cation/H+ antiporter subunit C XOO4065 87 COG1006 MnhC, Multisubunit Na+/H+ antiporter, MnhC subunit Inorganic ion transport and metabolism 58580630 Common - ISxac1 transposase XOO1007 13 None None None 58581986 Common panC pantoate--beta-alanine ligase XOO2363 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 58581638 Pathogen - hypothetical protein XOO2015 2 None None None 58580967 Common - ISxac3 transposase XOO1344 17 None None None 58584049 Pathogen - hypothetical protein XOO4426 2 None None None 58580798 Common gltP proton glutamate symport protein XOO1175 162 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 58582830 Common - hypothetical protein XOO3207 126 COG0278 COG0278, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 58580791 Common - hypothetical protein XOO1168 90 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 58583387 Common tesA acyl-CoA thioesterase I XOO3764 98 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 58582835 Common nadC nicotinate-nucleotide pyrophosphorylase XOO3212 202 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 58583169 Pathogen raxST putative sulfotransferase RaxST XOO3546 1 None None None 58580075 Common yhhT transport protein XOO0452 123 COG0628 PerM, Predicted permease General function prediction only 58581025 Common nifS cysteine desulfurase XOO1402 238 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 58583647 Pathogen - hypothetical protein XOO4024 1 None None None 58584251 Common glpQ glycerophosphoryl diester phosphodiesterase XOO4628 98 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 58581188 Common bapA ABC transporter ATP-binding protein XOO1565 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 58581408 Common glk glucokinase XOO1785 89 COG0837 Glk, Glucokinase Carbohydrate transport and metabolism 161899021 Common pyrE orotate phosphoribosyltransferase XOO0508 178 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 58582114 Common - hypothetical protein XOO2491 3 None None None 122879293 Common ftsZ cell division protein FtsZ XOO3822 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 58583803 Common - putative ISXo8 transposase XOO4180 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580492 Common - hypothetical protein XOO0869 55 COG3649 COG3649, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 58582555 Common - transcriptional regulator XOO2932 112 COG0583 LysR, Transcriptional regulator Transcription 122879284 Pathogen - hypothetical protein XOO3673 1 COG3417 FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) General function prediction only 58583280 Common pms methionine sulfoxide reductase A XOO3657 204 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 58583312 Common cysU ABC transporter sulfate permease XOO3689 209 COG0555 CysU, ABC-type sulfate transport system, permease component Posttranslational modification, protein turnover, chaperones 58582157 Common - hypothetical protein XOO2534 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 121632106 Pathogen - hypothetical protein XOO4825 1 None None None 58580768 Common gmk guanylate kinase XOO1145 213 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 58582876 Common trpI transcriptional regulator XOO3253 95 COG0583 LysR, Transcriptional regulator Transcription 121632022 Common - IS1404 transposase XOO4707 62 None None None 58583896 Common - hypothetical protein XOO4273 49 COG1738 COG1738, Uncharacterized conserved protein Function unknown 58580070 Common srpA catalase XOO0447 108 COG0753 KatE, Catalase Inorganic ion transport and metabolism 58580324 Pathogen - hypothetical protein XOO0701 1 None None None 122879199 Common - hypothetical protein XOO2561 188 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 58580639 Common - Transposase and inactivated derivatives XOO1016 47 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581942 Common eda KDPG and KHG aldolase XOO2319 83 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 58582837 Common pnp polynucleotide phosphorylase/polyadenylase XOO3214 241 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 58580083 Common - halogenase XOO0460 34 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 121632029 Common - IS1404 transposase XOO4716 62 None None None 58580487 Common - putative transposase XOO0864 25 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583459 Common - hypothetical protein XOO3836 8 None None None 58581728 Pathogen - ISxac1 transposase XOO2105 1 None None None 58579717 Common hrcC HrcC XOO0094 135 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 58582856 Common nuoD NADH dehydrogenase subunit D XOO3233 191 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 58580384 Common fabB beta-ketoacyl- synthase I XOO0761 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 58579725 Common - putative transposase XOO0102 3 None None None 58582500 Pathogen rpfI regulatory protein XOO2877 1 None None None 58579649 Pathogen - transcriptional regulator XOO0026 1 COG3710 CadC, DNA-binding winged-HTH domains Transcription 58580781 Common pilN fimbrial assembly membrane protein XOO1158 37 COG3166 PilN, Tfp pilus assembly protein PilN Cell motility and secretion / Intracellular trafficking and secretion 58583425 Pathogen - hypothetical protein XOO3802 1 None None None 58583998 Common - Transposase and inactivated derivatives, IS30 family XOO4375 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58582529 Common - hypothetical protein XOO2906 3 None None None 121632076 Pathogen - putative ISXo8 transposase XOO4770 1 None None None 58582997 Common sac1 sulfur deprivation response regulator XOO3374 129 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 58582652 Common - Tn5044 transposase XOO3029 51 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 58579727 Common - hypothetical protein XOO0104 197 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 58581307 Pathogen - hypothetical protein XOO1684 1 None None None 58584181 Common rpmG 50S ribosomal protein L33 XOO4558 133 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 58582823 Common - hypothetical protein XOO3200 28 COG4966 PilW, Tfp pilus assembly protein PilW Cell motility and secretion / Intracellular trafficking and secretion 58582599 Common tlyC hemolysin XOO2976 219 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 58582757 Common - hypothetical protein XOO3134 44 COG4805 COG4805, Uncharacterized protein conserved in bacteria Function unknown 58580386 Common dinP DNA polymerase IV XOO0763 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 58583761 Common cox11 cytochrome C oxidase assembly protein XOO4138 68 COG3175 COX11, Cytochrome oxidase assembly factor Posttranslational modification, protein turnover, chaperones 121632134 Common - IS1404 transposase XOO4927 62 None None None 58580805 Common - hypothetical protein XOO1182 38 COG0427 ACH1, Acetyl-CoA hydrolase Energy production and conversion 58584106 Common ntrC two-component system regulatory protein XOO4483 212 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 58583760 Common cox3 cytochrome C oxidase subunit III XOO4137 158 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 58582660 Common - hypothetical protein XOO3037 20 COG3913 SciT, Uncharacterized protein conserved in bacteria Function unknown 58583375 Common thyA thymidylate synthase XOO3752 143 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 58582056 Common - hypothetical protein XOO2433 12 None None None 58581164 Pathogen - hypothetical protein XOO1541 1 None None None 58583428 Common - hypothetical protein XOO3805 3 None None None 121632143 Pathogen - hypothetical protein XOO4952 1 None None None 58581736 Common - IS1404 transposase XOO2113 100 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582668 Common clpB ClpB XOO3045 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 58583683 Common - metalloproteinase XOO4060 43 COG3227 LasB, Zinc metalloprotease (elastase) Amino acid transport and metabolism 58582205 Common fliD flagellar protein XOO2582 77 COG1345 FliD, Flagellar capping protein Cell motility and secretion 58580800 Common fhuE outer membrane receptor for ferric iron uptake XOO1177 51 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 58580306 Common - probable two-component response regulator XOO0683 208 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58580001 Common - hypothetical protein XOO0378 8 None None None 58583362 Common - hydrolase XOO3739 30 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 58582160 Common fadB 3-hydroxyacyl-CoA dehydrogenase XOO2537 161 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 58583598 Common - putative transposase XOO3975 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879169 Pathogen - hypothetical protein XOO2267 2 None None None 58584212 Common - hypothetical protein XOO4589 51 COG2234 Iap, Predicted aminopeptidases General function prediction only 58579944 Common - putative transposase XOO0321 39 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583321 Common fadH 2,4-dienoyl-CoA reductase XOO3698 204 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 58580509 Common holB DNA polymerase III subunit delta' XOO0886 216 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 58581707 Common - tRNA/rRNA methyltransferase XOO2084 216 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 122879243 Common - peptidase XOO3131 56 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 58581074 Pathogen - hypothetical protein XOO1451 2 None None None 58581856 Pathogen ygeA putative resistance protein XOO2233 1 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 122879355 Common - putative transposase XOO4458 43 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879076 Common - hypothetical protein XOO1181 6 None None None 58584027 Common guaA glutamine amidotransferase XOO4404 208 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 58581566 Common nodQ ATP sulfurylase/adenylylsulfate kinase XOO1943 112 COG2895 CysN, GTPases - Sulfate adenylate transferase subunit 1 Inorganic ion transport and metabolism 122879000 Common aspH aspartyl-asparaginyl beta-hydroxylase XOO0232 37 COG3555 COG3555, Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases Posttranslational modification, protein turnover, chaperones 58583034 Common - hypothetical protein XOO3411 113 COG2110 COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 General function prediction only 122879038 Common - protease XOO0680 114 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 58582800 Common gumD GumD XOO3177 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 58583319 Common mopB outer membrane protein XOO3696 3 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 58580482 Common - putative transcriptional regulator XOO0859 115 COG2188 PhnF, Transcriptional regulators Transcription 58581209 Common pilE pilin XOO1586 51 COG4969 PilA, Tfp pilus assembly protein, major pilin PilA Cell motility and secretion / Intracellular trafficking and secretion 58581588 Common lpxA UDP-N-acetylglucosamine acyltransferase XOO1965 143 COG1043 LpxA, Acyl- acyl carrier protein 58582640 Common - IS1478 transposase XOO3017 27 None None None 58581628 Pathogen - hypothetical protein XOO2005 1 None None None 58580918 Common - conserved hypothetical protein-putative membrane protein XOO1295 40 COG3647 COG3647, Predicted membrane protein Function unknown 58584227 Common kgtP dicarboxylate transport protein XOO4604 144 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 122879316 Common - dipeptidyl peptidase IV XOO4043 66 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 122879361 Common - hypothetical protein XOO4508 65 COG4301 COG4301, Uncharacterized conserved protein Function unknown 58583842 Common - transcriptional regulator MarR family XOO4219 9 COG1846 MarR, Transcriptional regulators Transcription 58583087 Common - Type I restriction enzyme StySPI specificity protein XOO3464 104 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 58581613 Common asnB asparagine synthetase B XOO1990 157 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 58583111 Common - hypothetical protein XOO3488 49 COG4253 COG4253, Uncharacterized protein conserved in bacteria Function unknown 58580198 Common trn2 tropinone reductase XOO0575 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 58582522 Common feoB ferrous iron transport protein B XOO2899 172 COG0370 FeoB, Fe2+ transport system protein B Inorganic ion transport and metabolism 58581925 Common - hypothetical protein XOO2302 5 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 58583613 Pathogen - hypothetical protein XOO3990 1 None None None 58579798 Common - hypothetical protein XOO0175 44 COG3569 COG3569, Topoisomerase IB DNA replication, recombination, and repair 58583828 Common - MFS transporter XOO4205 18 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58583113 Common - hypothetical protein XOO3490 48 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 161899007 Common aroK shikimate kinase XOO1244 202 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 58583739 Common - putative transposase XOO4116 24 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580021 Common - dipeptidyl peptidase IV XOO0398 116 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 58580217 Common ribA GTP cyclohydrolase XOO0594 171 COG0807 RibA, GTP cyclohydrolase II Coenzyme metabolism 58580186 Common - transposase XOO0563 32 None None None 58582809 Common infC translation initiation factor IF-3 XOO3186 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 122879058 Common ilvC ketol-acid reductoisomerase XOO0946 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 122879113 Common pilC fimbrial assembly protein XOO1585 142 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 58581216 Common sucC succinyl-CoA synthetase subunit beta XOO1593 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 58582092 Common - putative ISXo8 transposase XOO2469 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580033 Pathogen - hypothetical protein XOO0410 1 None None None 161899018 Common fmt methionyl-tRNA formyltransferase XOO0586 217 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 58581394 Common - hypothetical protein XOO1771 19 COG3538 COG3538, Uncharacterized conserved protein Function unknown 58581518 Common - transposase XOO1895 52 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583149 Common - hypothetical protein XOO3526 8 None None None 58583710 Pathogen - hypothetical protein XOO4087 2 COG2959 HemX, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 58580427 Common - hypothetical protein XOO0804 78 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 58581052 Common - hypothetical protein XOO1429 2 COG3134 COG3134, Predicted outer membrane lipoprotein Function unknown 58583967 Pathogen - hypothetical protein XOO4344 1 None None None 58580139 Common - IS1404 transposase XOO0516 86 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581248 Common ribF bifunctional riboflavin kinase/FMN adenylyltransferase XOO1625 211 COG0196 RibF, FAD synthase Coenzyme metabolism 58584013 Common - nitrile hydratase activator XOO4390 129 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 58581447 Common - hypothetical protein XOO1824 79 COG2353 COG2353, Uncharacterized conserved protein Function unknown 58582768 Common - hypothetical protein XOO3145 72 COG2924 COG2924, Uncharacterized protein conserved in bacteria Function unknown 58579733 Common - hypothetical protein XOO0110 38 COG1649 COG1649, Uncharacterized protein conserved in bacteria Function unknown 58584136 Common - hypothetical protein XOO4513 4 COG5126 FRQ1, Ca2+-binding protein (EF-Hand superfamily) Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only 58582926 Common pmbA PmbA XOO3303 156 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 58580911 Common - hypothetical protein XOO1288 102 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 58580733 Common - hypothetical protein XOO1110 13 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 58580040 Common catB catalase precursor XOO0417 127 COG0753 KatE, Catalase Inorganic ion transport and metabolism 58580865 Common hemE uroporphyrinogen decarboxylase XOO1242 181 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 122879309 Common - outer membrane lipoprotein XOO4004 33 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 58580658 Common lon ATP-dependent serine proteinase La XOO1035 215 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 122879011 Common - hypothetical protein XOO0346 113 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 121632086 Common mtgA monofunctional biosynthetic peptidoglycan transglycosylase XOO4787 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 122879095 Common bfeA ferric enterobactin receptor XOO1366 110 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 58583793 Common - Transposase and inactivated derivatives XOO4170 6 None None None 58582931 Common - putative transposase XOO3308 46 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 161898984 Common fliC flagellin XOO2581 110 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 58581269 Common - putative ISXo8 transposase XOO1646 18 None None None 58581264 Common - hypothetical protein XOO1641 5 None None None 58581010 Common - glutamine synthetase family protein XOO1387 223 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 58582116 Common - putative ISXo8 transposase XOO2493 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582880 Common - hypothetical protein XOO3257 2 None None None 122879158 Common - putative ISXo8 transposase XOO2132 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58581200 Common - RhsD protein precursor XOO1577 72 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 58581440 Common metA homoserine O-acetyltransferase XOO1817 43 COG2021 MET2, Homoserine acetyltransferase Amino acid transport and metabolism 58584038 Common rdgC recombination associated protein XOO4415 53 COG2974 RdgC, DNA recombination-dependent growth factor C DNA replication, recombination, and repair 122879051 Common - putative ISXo8 transposase XOO0818 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58579896 Common - IS1478 transposase XOO0273 27 None None None 122879174 Common bglS beta-glucosidase XOO2352 95 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 58583122 Common - hypothetical protein XOO3499 20 COG3673 COG3673, Uncharacterized conserved protein Function unknown 58580779 Common mrcA penicillin-binding protein 1A XOO1156 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 122879086 Common - hypothetical protein XOO1347 7 None None None 58583965 Common purU formyltetrahydrofolate deformylase XOO4342 219 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 58581197 Pathogen - putative ISXo8 transposase XOO1574 1 None None None 58580098 Common nrdF ribonucleotide-diphosphate reductase subunit beta XOO0475 158 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 58583238 Common rbn ribonuclease BN/unknown domain fusion protein XOO3615 118 COG1295 Rbn, Predicted membrane protein Function unknown 122879346 Common - NAD-dependent deacetylase XOO4347 149 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 58582604 Common - ABC transporter ATP-binding protein XOO2981 225 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 122879018 Pathogen - hypothetical protein XOO0430 2 COG3147 DedD, Uncharacterized protein conserved in bacteria Function unknown 58580651 Common - IS1404 transposase XOO1028 30 None None None 58582230 Common fliL flagellar protein XOO2607 12 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 58581249 Common ileS isoleucyl-tRNA synthetase XOO1626 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 58581746 Common acpD acyl carrier protein phosphodiesterase XOO2123 97 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 58581946 Common - two-component system sensor protein XOO2323 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58579697 Pathogen - hypothetical protein XOO0074 2 None None None 58580788 Common - putative transposase XOO1165 30 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583203 Common rplB 50S ribosomal protein L2 XOO3580 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 58582106 Common yajC preprotein translocase subunit YajC XOO2483 177 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 58580107 Common pcaB 3-carboxy-cis,cis-muconate cycloisomerase XOO0484 194 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 58582216 Common fabG 3-oxoacyl- reductase XOO2593 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 58583889 Common - hypothetical protein XOO4266 119 COG2353 COG2353, Uncharacterized conserved protein Function unknown 58580338 Common - outer membrane protein XOO0715 101 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 58583601 Common - IS1478 transposase XOO3978 17 None None None 58580255 Pathogen - hypothetical protein XOO0632 1 None None None 122879108 Common gst glutathione S-transferase XOO1521 99 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 161898976 Common pyrG CTP synthetase XOO2967 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 58581375 Common - hypothetical protein XOO1752 14 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 58584110 Common glnB nitrogen regulatory protein P-II XOO4487 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 58582642 Common - hypothetical protein XOO3019 155 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 58582398 Common potI putrescine transport protein; permease XOO2775 160 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 58580866 Common aroB 3-dehydroquinate synthase XOO1243 205 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 58583755 Common coxD protoheme IX farnesyltransferase XOO4132 179 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 58580465 Common xadA outer membrane protein XOO0842 37 None None None 121632013 Common - IS1479 transposase XOO4698 16 None None None 58579820 Common - alpha-amylase XOO0197 88 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 58583532 Common fyuA TonB-dependent receptor XOO3909 19 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 58582691 Common - hypothetical protein XOO3068 8 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 161898995 Common serS seryl-tRNA synthetase XOO2116 247 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 58581774 Common cycJ cytochrome c-type biogenesis protein CcmE XOO2151 93 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 58583951 Common - hypothetical protein XOO4328 137 COG1733 COG1733, Predicted transcriptional regulators Transcription 58581124 Common - transposase XOO1501 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58582060 Common - putative transposase XOO2437 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580454 Common valS valyl-tRNA synthetase XOO0831 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 121632109 Pathogen - hypothetical protein XOO4840 1 None None None 58579791 Common avrBs2 avirulence protein XOO0168 16 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 58579958 Common - hypothetical protein XOO0335 8 None None None 58582191 Common cheV chemotaxis protein XOO2568 142 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 58583994 Common - IS1404 transposase XOO4371 4 None None None 122879042 Common lpdA dihydrolipoamide dehydrogenase XOO0722 241 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 58582086 Common pstC ABC transporter phosphate permease XOO2463 228 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 58580593 Common gst glutathione S-transferase XOO0970 87 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 58581536 Pathogen - hypothetical protein XOO1913 1 None None None 58580393 Common rhlE ATP-dependent RNA helicase XOO0770 237 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 122879183 Common sdeB N-formimino-L-glutamate deiminase XOO2397 112 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 58583047 Pathogen - hypothetical protein XOO3424 3 None None None 58582746 Common btuB TonB-dependent receptor XOO3123 93 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 58581177 Common - hypothetical protein XOO1554 47 COG1801 COG1801, Uncharacterized conserved protein Function unknown 58584159 Common - 2-hydroxyhepta-2,4-diene-1,7-dioateisomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase XOO4536 185 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 121632079 Common radA DNA repair protein RadA XOO4776 206 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 58580943 Common - transposase XOO1320 30 None None None 58581331 Common - phage-related tail protein XOO1708 14 COG5004 COG5004, P2-like prophage tail protein X General function prediction only 122879299 Common cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase XOO3900 213 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 58581687 Common btuE ABC transporter vitamin B12 uptake permease XOO2064 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 58579937 Common - putative transposase XOO0314 19 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581577 Common - hypothetical protein XOO1954 79 COG1981 COG1981, Predicted membrane protein Function unknown 58581386 Common - hypothetical protein XOO1763 29 COG4692 COG4692, Predicted neuraminidase (sialidase) Carbohydrate transport and metabolism 58581062 Common ssb single-strand DNA-binding protein XOO1439 202 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 58579930 Common yrbC toluene tolerance protein XOO0307 57 COG2854 Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component Secondary metabolites biosynthesis, transport, and catabolism 58583017 Common acrF acriflavin resistance protein XOO3394 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 122879205 Common - hypothetical protein XOO2729 66 COG5394 COG5394, Uncharacterized protein conserved in bacteria Function unknown 58583660 Common - hypothetical protein XOO4037 66 COG2962 RarD, Predicted permeases General function prediction only 58582789 Common gumN GumN XOO3166 2 None None None 121632020 Common - hypothetical protein XOO4705 9 COG0622 COG0622, Predicted phosphoesterase General function prediction only 58582969 Common - transposase XOO3346 31 None None None 58580371 Pathogen - hypothetical protein XOO0748 1 None None None 58583717 Common - hydrolase haloacid delahogenase-like family XOO4094 22 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 58584124 Common parA partition protein XOO4501 126 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 58581258 Common - hypothetical protein XOO1635 4 None None None 58584071 Common - transcriptional regulator tetR family XOO4448 40 COG1309 AcrR, Transcriptional regulator Transcription 58581455 Common tnp transposase XOO1832 5 None None None 58582139 Common - transposase XOO2516 32 None None None 58581800 Common - hypothetical protein XOO2177 87 COG2957 COG2957, Peptidylarginine deiminase and related enzymes Amino acid transport and metabolism 58583450 Common ftsW cell division protein XOO3827 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 58580754 Common - hypothetical protein XOO1131 9 None None None 122879033 Common cheR methyltransferase XOO0644 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 58582728 Common mobA molybdopterin guanine dinucleotide synthase XOO3105 44 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 58580158 Common - hypothetical protein XOO0535 51 COG1289 COG1289, Predicted membrane protein Function unknown 58581002 Common hrpG HrpG XOO1379 196 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58579784 Common - transposase XOO0161 31 None None None 58583462 Common - hypothetical protein XOO3839 122 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 58580551 Common pcm L-isoaspartate protein carboxylmethyltransferase XOO0928 151 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 58581286 Common ruvB Holliday junction DNA helicase B XOO1663 228 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 58581202 Pathogen - putative ISXo8 transposase XOO1579 1 None None None 58582445 Pathogen - hypothetical protein XOO2822 1 None None None 58582416 Common - beta alanine--pyruvate transaminase XOO2793 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 58580816 Common modC ATP-binding component of molybdate transport XOO1193 249 COG4148 ModC, ABC-type molybdate transport system, ATPase component Inorganic ion transport and metabolism 58582632 Common cycK C-type cytochrome biogenesis membrane protein XOO3009 127 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 58580728 Common tctD two-component system regulatory protein XOO1105 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58582779 Common - hypothetical protein XOO3156 4 COG2345 COG2345, Predicted transcriptional regulator Transcription 58583516 Common metC putative cystathionine gamma-synthase protein XOO3893 6 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 58580171 Common fis DNA-binding protein Fis XOO0548 94 COG2901 Fis, Factor for inversion stimulation Fis, transcriptional activator Transcription / DNA replication, recombination, and repair 58581149 Common phr photolyase XOO1526 141 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 58582943 Common oar Oar protein XOO3320 30 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 58580715 Common - hypothetical protein XOO1092 2 COG0500 SmtA, SAM-dependent methyltransferases Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 161898961 Common trpC indole-3-glycerol-phosphate synthase XOO4160 218 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 58582495 Common lysS lysyl-tRNA synthetase XOO2872 249 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 58583295 Common - UDP-2,3-diacylglucosamine hydrolase XOO3672 67 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 58580495 Common - hypothetical protein XOO0872 78 COG1203 COG1203, Predicted helicases General function prediction only 58579888 Common - rhamnogalacturonan acetylesterase XOO0265 16 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 58580470 Common xpsE general secretion pathway protein E XOO0847 208 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 58581296 Common - transposase XOO1673 52 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580895 Common - transposase XOO1272 52 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581029 Common - hypothetical protein XOO1406 173 COG1959 COG1959, Predicted transcriptional regulator Transcription 58583857 Common - IS1478 transposase XOO4234 18 None None None 58583189 Common rpsE 30S ribosomal protein S5 XOO3566 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 122879007 Common benE benzoate transporter XOO0294 60 COG3135 BenE, Uncharacterized protein involved in benzoate metabolism Secondary metabolites biosynthesis, transport, and catabolism 58581581 Common - probable ABC transporter ATP-binding protein XOO1958 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 58583358 Common vanR transcriptional regulator gntR family XOO3735 64 COG1802 GntR, Transcriptional regulators Transcription 58583676 Common - hypothetical protein XOO4053 57 COG5407 SEC63, Preprotein translocase subunit Sec63 Intracellular trafficking and secretion 58581838 Common - putative transposase XOO2215 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58580931 Common dapE succinyl-diaminopimelate desuccinylase XOO1308 106 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 58580530 Common - bacterioferritin XOO0907 70 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 58581990 Common - hypothetical protein XOO2367 69 COG1469 COG1469, Uncharacterized conserved protein Function unknown 58581400 Common - transposase XOO1777 49 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579807 Common - ISxac1 transposase XOO0184 14 None None None 58582780 Common - putative transposase XOO3157 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583418 Common - transcriptional regulator tetR/acrR family XOO3795 36 COG1309 AcrR, Transcriptional regulator Transcription 58583703 Pathogen - transposase XOO4080 1 None None None 58583369 Common surA peptidyl-prolyl cis-trans isomerase XOO3746 155 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 58583976 Common mttC type V secretory pathway protein XOO4353 234 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 58579661 Common proP proline/betaine transporter XOO0038 109 None None None 58580708 Common - putative transposase XOO1085 21 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58583669 Common - oxidoreductase XOO4046 22 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 58583396 Pathogen nrtB permease XOO3773 1 None None None 58583776 Common rplM 50S ribosomal protein L13 XOO4153 232 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 58581642 Common - acyl-CoA dehydrogenase XOO2019 147 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 58581782 Common - glutamine cyclotransferase XOO2159 22 COG3823 COG3823, Glutamine cyclotransferase Posttranslational modification, protein turnover, chaperones 58582435 Common fruA PTS system, fructose-specific IIBC component XOO2812 68 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 58583917 Common ndh NADH dehydrogenase XOO4294 191 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 58580225 Common - putative transposase XOO0602 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580553 Common - hypothetical protein XOO0930 15 COG3292 COG3292, Predicted periplasmic ligand-binding sensor domain Signal transduction mechanisms 58582172 Common - hypothetical protein XOO2549 26 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 58580087 Common - hypothetical protein XOO0464 29 COG3100 COG3100, Uncharacterized protein conserved in bacteria Function unknown 58582472 Common - hypothetical protein XOO2849 20 COG5581 COG5581, Predicted glycosyltransferase Cell envelope biogenesis, outer membrane 58581040 Common - hypothetical protein XOO1417 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 58582302 Common - hypothetical protein XOO2679 100 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 58580977 Common lysA diaminopimelate decarboxylase XOO1354 214 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 58581820 Common - NADH dehydrogenase XOO2197 204 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 58583340 Common - putative transposase XOO3717 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580440 Common - putative transposase XOO0817 32 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 122879065 Common - protein phosphatase XOO1045 132 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 122879056 Common glpQ glycerophosphodiester phosphodiesterase XOO0902 133 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 122879372 Common ygjT export protein XOO4626 90 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 58582402 Common rmrB transport protein XOO2779 198 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58581490 Common nagZ beta-hexosaminidase XOO1867 180 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 121632048 Common - IS1404 transposase XOO4738 62 None None None 58584073 Common - putative transposase XOO4450 44 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579923 Common - putative transposase XOO0300 31 None None None 58581765 Common - hypothetical protein XOO2142 18 None None None 58581290 Pathogen tolA TolA XOO1667 2 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 58583160 Common - hypothetical protein XOO3537 24 COG3907 COG3907, PAP2 (acid phosphatase) superfamily protein General function prediction only 58583268 Common ahpC alkyl hydroperoxide reductase subunit C XOO3645 214 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 58580903 Common - hypothetical protein XOO1280 140 COG1660 COG1660, Predicted P-loop-containing kinase General function prediction only 58581528 Common - hypothetical protein XOO1905 5 None None None 58583501 Common dr161 nodulin 21-related protein XOO3878 83 COG1814 COG1814, Uncharacterized membrane protein Function unknown 122878984 Common glgB2 glycogen branching enzyme XOO0113 146 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 58580504 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase XOO0881 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 58582248 Pathogen - IS1478 transposase XOO2625 1 None None None 58581345 Pathogen - hypothetical protein XOO1722 2 None None None 58580644 Common - putative transposase XOO1021 44 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582941 Common - putative transposase XOO3318 44 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 121632061 Common - hypothetical protein XOO4752 96 COG5007 COG5007, Predicted transcriptional regulator, BolA superfamily Transcription 58582173 Common - hypothetical protein XOO2550 12 None None None 58582454 Common motB flagellar motor protein MotD XOO2831 154 COG1360 MotB, Flagellar motor protein Cell motility and secretion 58582337 Common - hypothetical protein XOO2714 16 None None None 161899004 Common ate1 arginyl-tRNA-protein transferase XOO1611 85 COG2935 COG2935, Putative arginyl-tRNA:protein arginylyltransferase Posttranslational modification, protein turnover, chaperones 58580412 Common wzt putative ATP binding protein XOO0789 249 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 58582067 Common - hypothetical protein XOO2444 29 COG2258 COG2258, Uncharacterized protein conserved in bacteria Function unknown 58583405 Common - voltage-gated potassium channel beta subunit XOO3782 197 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 58582251 Common - putative ISXo8 transposase XOO2628 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583231 Common prfA peptide chain release factor 1 XOO3608 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 58581465 Common mmsA methylmalonate-semialdehyde dehydrogenase XOO1842 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 58584003 Common - transcriptional regulator acrR family XOO4380 23 COG1309 AcrR, Transcriptional regulator Transcription 58583339 Common - possible transposase XOO3716 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 121632089 Pathogen - hypothetical protein XOO4790 1 None None None 58580547 Common - membrane protein XOO0924 3 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 58584142 Pathogen fpvA ferripyoverdine receptor XOO4519 1 None None None 58582361 Common acvB virulence protein XOO2738 19 COG3946 VirJ, Type IV secretory pathway, VirJ component Intracellular trafficking and secretion 58579742 Common mauG methylamine utilization protein precursor XOO0119 95 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 58584005 Common - hypothetical protein XOO4382 7 None None None 58580536 Common hflC integral membrane proteinase subunit XOO0913 211 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 58581966 Common - DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog XOO2343 154 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 58579869 Common lppC acid phosphatase XOO0246 27 COG2503 COG2503, Predicted secreted acid phosphatase General function prediction only 58583475 Common ribH riboflavin synthase subunit beta XOO3852 223 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 58580231 Common afa22MI-R endonuclease XOO0608 3 None None None 58582544 Common - ferredoxin XOO2921 145 COG1146 COG1146, Ferredoxin Energy production and conversion 58582029 Common gyrA DNA gyrase subunit A XOO2406 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 58581096 Common - hypothetical protein XOO1473 86 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 58582570 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase XOO2947 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 58580356 Common atpC F0F1 ATP synthase subunit epsilon XOO0733 165 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 58580280 Pathogen - hypothetical protein XOO0657 1 None None None 121632037 Common - hypothetical protein XOO4727 13 None None None 58581937 Common zwf glucose-6-phosphate 1-dehydrogenase XOO2314 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 58580835 Common - hypothetical protein XOO1212 146 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 58581313 Common - phage-related tail protein XOO1690 27 COG3499 COG3499, Phage protein U General function prediction only 58582596 Common - hypothetical protein XOO2973 68 COG1434 COG1434, Uncharacterized conserved protein Function unknown 58581500 Pathogen - hypothetical protein XOO1877 1 None None None 58579757 Common - IS1479 transposase XOO0134 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 122879343 Common rapK pteridine-dependent deoxygenase like protein XOO4322 15 None None None 58582217 Common - Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) XOO2594 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 58583262 Common - MutT-like protein XOO3639 76 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 58579632 Common exbB biopolymer transport ExbB protein XOO0009 150 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 122879328 Common - IS1478 transposase XOO4218 27 None None None 58581030 Common - hypothetical protein XOO1407 24 COG2940 COG2940, Proteins containing SET domain General function prediction only 58583774 Common nudH dinucleoside polyphosphate hydrolase XOO4151 112 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 58580273 Pathogen - hypothetical protein XOO0650 1 None None None 58580295 Common - transposase XOO0672 52 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583878 Common avrXa7 avirulence/virulence protein XOO4255 11 COG5164 SPT5, Transcription elongation factor Transcription 58581478 Common rnc ribonuclease III XOO1855 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 122879278 Common aspG asparaginase XOO3619 49 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 58583566 Pathogen - hypothetical protein XOO3943 1 None None None 58583544 Common - hypothetical protein XOO3921 18 COG4299 COG4299, Uncharacterized protein conserved in bacteria Function unknown 58580969 Common - putative ISXo8 transposase XOO1346 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580181 Common bccP acetyl-CoA carboxylase biotin carboxyl carrier protein subunit XOO0558 178 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 58583158 Common colR two-component system regulatory protein XOO3535 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58583906 Pathogen - hypothetical protein XOO4283 1 None None None 58580115 Pathogen - hypothetical protein XOO0492 1 None None None 58581980 Common phoX alkaline phosphatase XOO2357 34 COG3211 PhoX, Predicted phosphatase General function prediction only 58582368 Common - hypothetical protein XOO2745 17 None None None 58583390 Common tauD taurine dioxygenase XOO3767 47 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 58579903 Common yahK alcohol dehydrogenase XOO0280 171 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 58580262 Common cioA cyanide insensitive terminal oxidase XOO0639 165 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 58581531 Pathogen - hypothetical protein XOO1908 1 None None None 122879151 Common map methionine aminopeptidase XOO1983 245 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 58581236 Common rfaY RNA polymerase sigma factor XOO1613 4 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 58582186 Common pdeA c-di-GMP phosphodiesterase A XOO2563 196 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 58581470 Common czcD cobalt-zinc-cadmium resistance protein XOO1847 209 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 122879044 Common - Transposase and inactivated derivatives XOO0752 57 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583572 Common - hypothetical protein XOO3949 30 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 121632041 Pathogen - transposase XOO4731 1 None None None 122879140 Common - IS1478 transposase XOO1863 30 None None None 58581967 Common - hypothetical protein XOO2344 8 COG5662 COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) Transcription 58583581 Common mltB membrane-bound lytic transglycosylase XOO3958 103 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 58580144 Common - hypothetical protein XOO0521 20 None None None 58580522 Pathogen - hypothetical protein XOO0899 1 None None None 58582923 Common - extracellular protease XOO3300 5 None None None 122878994 Common glnB nitrogen regulatory protein P-II XOO0213 187 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 58581974 Common - hypothetical protein XOO2351 21 COG2866 COG2866, Predicted carboxypeptidase Amino acid transport and metabolism 58583411 Common - methyltransferase XOO3788 86 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 122879301 Common - hypothetical protein XOO3931 95 COG1565 COG1565, Uncharacterized conserved protein Function unknown 58580233 Pathogen - hypothetical protein XOO0610 1 None None None 58580681 Common - hypothetical protein XOO1058 11 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 122879231 Common - hypothetical protein XOO2927 190 COG1875 COG1875, Predicted ATPase related to phosphate starvation-inducible protein PhoH Signal transduction mechanisms 58580847 Common - flavin monoamine oxidase-related protein XOO1224 19 COG1231 COG1231, Monoamine oxidase Amino acid transport and metabolism 58581674 Common - putative transposase XOO2051 3 None None None 58581907 Common - putative transposase XOO2284 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58581650 Common fur ferric uptake regulator Fur XOO2027 189 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 122879255 Common - fructose-bisphosphate aldolase XOO3412 51 COG3588 COG3588, Fructose-1,6-bisphosphate aldolase Carbohydrate transport and metabolism 58584132 Common - hypothetical protein XOO4509 96 COG1262 COG1262, Uncharacterized conserved protein Function unknown 58584021 Common glyS glycyl-tRNA synthetase subunit beta XOO4398 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 58581354 Common - hypothetical protein XOO1731 14 COG4287 PqaA, PhoPQ-activated pathogenicity-related protein General function prediction only 58582309 Common - possible transposase XOO2686 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581840 Common - putative transposase XOO2217 3 None None None 122879203 Common - hypothetical protein XOO2674 35 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 122879148 Common - PHB depolymerase XOO1952 45 COG4553 DepA, Poly-beta-hydroxyalkanoate depolymerase Lipid metabolism 58581081 Common - pirin-related protein XOO1458 132 COG1741 COG1741, Pirin-related protein General function prediction only 58581682 Pathogen - hypothetical protein XOO2059 1 None None None 58582619 Common - hypothetical protein XOO2996 15 None None None 122879071 Common maeB malic enzyme XOO1118 216 COG0281 SfcA, Malic enzyme Energy production and conversion 58582654 Common - cytochrome C peroxidase XOO3031 91 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 121632067 Pathogen - hypothetical protein XOO4758 1 None None None 58583302 Common folC folylpolyglutamate synthase; dihydrofolate synthase XOO3679 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 58581484 Common - transposase XOO1861 52 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581636 Common tnpA transposase XOO2013 33 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58579659 Common - hypothetical protein XOO0036 4 COG3832 COG3832, Uncharacterized conserved protein Function unknown 122879214 Common glnA glutamine synthetase XOO2782 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 58580571 Common - hypothetical protein XOO0948 94 COG3710 CadC, DNA-binding winged-HTH domains Transcription 58581541 Common - hypothetical protein XOO1918 19 COG5343 COG5343, Uncharacterized protein conserved in bacteria Function unknown 58581134 Pathogen pcp peptidoglycan-associated outer membrane lipoprotein XOO1511 2 COG3133 SlyB, Outer membrane lipoprotein Cell envelope biogenesis, outer membrane 58584148 Common - putative transposase XOO4525 41 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583935 Common - hypothetical protein XOO4312 15 COG4706 COG4706, Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase Lipid metabolism 58582955 Common trx thioredoxin XOO3332 232 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 58582413 Common fdsC formate dehydrogenase accessory protein XOO2790 137 COG1526 FdhD, Uncharacterized protein required for formate dehydrogenase activity Energy production and conversion 58581920 Common msbA ABC transporter ATP-binding protein XOO2297 248 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 58579652 Common iroN TonB-dependent receptor XOO0029 12 None None None 58581167 Common - inner membrane protein XOO1544 26 COG3686 COG3686, Predicted membrane protein Function unknown 58583282 Pathogen - two-component system regulatory protein XOO3659 1 None None None 58582833 Common purE phosphoribosylaminoimidazole carboxylase catalytic subunit XOO3210 229 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 58583832 Common fabH 3-oxoacyl-(acyl carrier protein) synthase III XOO4209 195 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 58583920 Common ung uracil-DNA glycosylase XOO4297 128 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 58583801 Common - putative transposase XOO4178 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581218 Common nadE NAD synthetase XOO1595 218 COG0171 NadE, NAD synthase Coenzyme metabolism 58580589 Common - hypothetical protein XOO0966 56 COG3781 COG3781, Predicted membrane protein Function unknown 58580014 Common prnA tryptophan halogenase XOO0391 16 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 58580429 Common yrbE ABC transporter permease XOO0806 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 122879228 Common xylS alpha-xylosidase XOO2914 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 58583915 Common - hypothetical protein XOO4292 68 COG1432 COG1432, Uncharacterized conserved protein Function unknown 121632094 Common - hypothetical protein XOO4796 19 COG2900 SlyX, Uncharacterized protein conserved in bacteria Function unknown 58580692 Common - hypothetical protein XOO1069 106 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 58583493 Common - two-component system regulatory protein XOO3870 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58583645 Common - zinc protease XOO4022 193 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 58579683 Pathogen - hypothetical protein XOO0060 2 None None None 58582427 Common acrA multidrug resistance protein XOO2804 147 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 122879127 Common - hypothetical protein XOO1719 4 None None None 58584033 Common hemH ferrochelatase XOO4410 167 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 58579981 Common - possible transposase XOO0358 66 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580169 Common - transposase XOO0546 30 None None None 58580077 Common comF competence protein F XOO0454 174 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 58579731 Common - ABC transporter substrate binding protein XOO0108 185 COG0661 AarF, Predicted unusual protein kinase General function prediction only 58581224 Common ostA trehalose-6-phosphate synthase XOO1601 97 COG0380 OtsA, Trehalose-6-phosphate synthase Carbohydrate transport and metabolism 58582221 Common - hypothetical protein XOO2598 13 None None None 58581406 Common fucA1 alpha-L-fucosidase XOO1783 32 COG3669 COG3669, Alpha-L-fucosidase Carbohydrate transport and metabolism 58583024 Common cysH phosphoadenosine phosphosulfate reductase XOO3401 165 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 58581428 Common - hypothetical protein XOO1805 94 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 58583624 Pathogen - hypothetical protein XOO4001 1 None None None 58580127 Common parB chromosome partitioning protein XOO0504 185 COG1475 Spo0J, Predicted transcriptional regulators Transcription 58583309 Common cysA sulfate ABC transporter ATP-binding protein XOO3686 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 58580344 Pathogen - hypothetical protein XOO0721 1 None None None 122879101 Common ispB octaprenyl-diphosphate synthase XOO1438 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 58582436 Common rpfN regulator of pathogenicity factors XOO2813 19 COG3659 OprB, Carbohydrate-selective porin Cell envelope biogenesis, outer membrane 161899023 Common birA biotin--protein ligase XOO0428 88 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 122879172 Common - hypothetical protein XOO2347 20 COG2388 COG2388, Predicted acetyltransferase General function prediction only 58582915 Common - hypothetical protein XOO3292 153 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 58582466 Pathogen - hypothetical protein XOO2843 1 None None None 58581453 Common - putative transposase XOO1830 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58582620 Common - hypothetical protein XOO2997 60 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 58583289 Common phoB two-component system regulatory protein XOO3666 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58580105 Common pcaH protocatechuate 3,4-dioxygenase beta chain XOO0482 61 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 58580783 Common pilP fimbrial assembly protein XOO1160 37 COG3168 PilP, Tfp pilus assembly protein PilP Cell motility and secretion / Intracellular trafficking and secretion 58581796 Common - hypothetical protein XOO2173 9 COG3408 GDB1, Glycogen debranching enzyme Carbohydrate transport and metabolism 58580840 Pathogen - hypothetical protein XOO1217 1 None None None 58583167 Common raxA putative membrane fusion protein RaxA XOO3544 28 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 58581944 Common - hypothetical protein XOO2321 3 None None None 58582155 Common - hypothetical protein XOO2532 55 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 121632047 Pathogen - hypothetical protein XOO4737 1 None None None 121632104 Pathogen - hypothetical protein XOO4823 1 None None None 58582973 Common - putative transposase XOO3350 27 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58582798 Common gumF GumF XOO3175 11 COG3594 NolL, Fucose 4-O-acetylase and related acetyltransferases Carbohydrate transport and metabolism 58584094 Common recC exodeoxyribonuclease V gamma chain XOO4471 63 COG1330 RecC, Exonuclease V gamma subunit DNA replication, recombination, and repair 58580111 Common pcaR transcriptional regulator XOO0488 114 COG1414 IclR, Transcriptional regulator Transcription 58582422 Common yieO drug resistance translocase XOO2799 187 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58583098 Common clpB ClpB XOO3475 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 58584102 Common - transposase XOO4479 31 None None None 58583864 Common - hypothetical protein XOO4241 4 None None None 58580056 Common - hypothetical protein XOO0433 24 COG2229 COG2229, Predicted GTPase General function prediction only 58582629 Common ccmC heme exporter protein C; cytochrome C-type biogenesis protein XOO3006 111 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 122879177 Common panD aspartate alpha-decarboxylase XOO2361 130 COG0853 PanD, Aspartate 1-decarboxylase Coenzyme metabolism 122879213 Common - putative ISXo8 transposase XOO2781 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58579663 Common trxA thioredoxin XOO0040 21 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 58581594 Common cdsA phosphatidate cytidylyltransferase XOO1971 214 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 58581090 Common vieA response regulator XOO1467 162 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 58580415 Common rmlB dTDP-glucose 4,6-dehydratase XOO0792 232 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 122879279 Common - hypothetical protein XOO3625 132 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 58582017 Common - hypothetical protein XOO2394 7 COG5373 COG5373, Predicted membrane protein Function unknown 58579858 Common bioH biotin biosynthesis protein XOO0235 103 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 58580103 Common gctB glutaconate CoA transferase subunit B XOO0480 21 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 122879026 Common nudC NADH pyrophosphatase XOO0527 106 COG2816 NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding DNA replication, recombination, and repair 58579967 Common dcp peptidyl-dipeptidase XOO0344 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 58580772 Common spoT pentaphosphate guanosine-3'-pyrophosphohydrolase XOO1149 207 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 122879330 Common - Transposase and inactivated derivatives XOO4226 57 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 121632052 Common - putative transposase XOO4742 17 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583700 Common pdhA pyruvate dehydrogenase E1 alpha subunit XOO4077 151 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 58580447 Common - putative transposase XOO0824 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582763 Common - D-amino acid oxidase XOO3140 127 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 58580226 Common traF TraF protein XOO0603 29 None None None 122879352 Common salR sal operon transcriptional repressor XOO4418 128 COG1609 PurR, Transcriptional regulators Transcription 58579785 Pathogen - hypothetical protein XOO0162 1 None None None 58582408 Common glnA glutamine synthase XOO2785 226 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 58581860 Common pyrD dihydroorotate dehydrogenase 2 XOO2237 161 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 58582342 Common - carboxylesterase XOO2719 113 COG0657 Aes, Esterase/lipase Lipid metabolism 122879110 Pathogen - hypothetical protein XOO1546 1 None None None 121632115 Pathogen - hypothetical protein XOO4882 1 None None None 58581047 Common - hypothetical protein XOO1424 7 None None None 58582903 Common - transposase XOO3280 64 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58582674 Common - hypothetical protein XOO3051 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 58581730 Common - transposase XOO2107 33 None None None 58582317 Common - putative ISXo8 transposase XOO2694 33 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582609 Common - glycosyltransferase XOO2986 53 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 58582821 Common - putative transposase XOO3198 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58580082 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase XOO0459 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 58583163 Pathogen - hypothetical protein XOO3540 1 None None None 58580855 Common hemL glutamate-1-semialdehyde aminotransferase XOO1232 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 58580148 Common - hypothetical protein XOO0525 166 COG0316 IscA, Uncharacterized conserved protein Function unknown 58579704 Common hrcR type III secretion system protein XOO0081 128 COG4790 EscR, Type III secretory pathway, component EscR Intracellular trafficking and secretion 58583591 Common mrdA penicillin-binding protein 2 XOO3968 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 58583730 Common - possible transposase XOO4107 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582270 Pathogen - hypothetical protein XOO2647 1 None None None 58580925 Common - nucleotidyl transferase XOO1302 215 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 122879029 Pathogen - hypothetical protein XOO0568 2 None None None 58579928 Common vacJ lipoprotein XOO0305 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 58582432 Common - transcriptional regulator lacI family XOO2809 126 COG1609 PurR, Transcriptional regulators Transcription 58581609 Common - Histone acetyltransferase HPA2 and related acetyltransferase XOO1986 2 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 58582004 Common - putative ISXo8 transposase XOO2381 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580425 Common alkB DNA repair system specific for alkylated DNA XOO0802 57 COG3145 AlkB, Alkylated DNA repair protein DNA replication, recombination, and repair 58583364 Common ubiH 2-octaprenyl-6-methoxyphenyl hydroxylase XOO3741 122 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 58580497 Common - transposase XOO0874 30 None None None 58580066 Common - hypothetical protein XOO0443 97 COG2962 RarD, Predicted permeases General function prediction only 58581405 Common - hypothetical protein XOO1782 33 COG3858 COG3858, Predicted glycosyl hydrolase General function prediction only 58581649 Common smpA outer membrane protein XOO2026 59 COG2913 SmpA, Small protein A (tmRNA-binding) Translation, ribosomal structure and biogenesis 122878978 Common - hypothetical protein XOO0027 26 COG3007 COG3007, Uncharacterized paraquat-inducible protein B Function unknown 58583115 Pathogen - hypothetical protein XOO3492 2 None None None 58581623 Common pmrA multidrug resistance efflux pump XOO2000 152 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 58583232 Common - hypothetical protein XOO3609 59 COG3914 Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family Posttranslational modification, protein turnover, chaperones 58583085 Common - Abortive infection bacteriophage resistance protein XOO3462 35 COG4823 AbiF, Abortive infection bacteriophage resistance protein Defense mechanisms 58583293 Common gtrB glycosyl transferase XOO3670 199 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 58582447 Common - hypothetical protein XOO2824 4 None None None 58582822 Pathogen pilX PilX XOO3199 2 COG4726 PilX, Tfp pilus assembly protein PilX Cell motility and secretion / Intracellular trafficking and secretion 58582147 Common - putative transposase XOO2524 4 None None None 58581869 Common - hypothetical protein XOO2246 18 None None None 58580257 Pathogen - hypothetical protein XOO0634 1 None None None 58581927 Common ycfV ABC transporter ATP-binding protein XOO2304 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 58583139 Common - hypothetical protein XOO3516 7 COG3913 SciT, Uncharacterized protein conserved in bacteria Function unknown 58580396 Common uptC type II secretion system protein-like protein XOO0773 162 COG5008 PilU, Tfp pilus assembly protein, ATPase PilU Cell motility and secretion / Intracellular trafficking and secretion 121632128 Pathogen - hypothetical protein YXOOp12 1 None None None 122879236 Common cycA cytochrome C2 XOO3001 52 COG3474 COG3474, Cytochrome c2 Energy production and conversion 122879282 Common - hypothetical protein XOO3665 128 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 58580579 Common - transposase XOO0956 32 None None None 58580689 Common recR recombination protein RecR XOO1066 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 58580723 Common suc1 sugar transporter XOO1100 32 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 58581121 Common - hypothetical protein XOO1498 19 None None None 58582735 Common - hypothetical protein XOO3112 30 COG3533 COG3533, Uncharacterized protein conserved in bacteria Function unknown 58582214 Common acp acyl carrier protein XOO2591 5 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 58579805 Common - transposase XOO0182 31 None None None 58582675 Common - hypothetical protein XOO3052 48 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 161898968 Common rplR 50S ribosomal protein L18 XOO3567 216 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 122879020 Common bioB biotin synthase XOO0455 173 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 58582597 Common pitA transport protein XOO2974 167 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 58582912 Common yxaH transport protein XOO3289 52 COG2311 COG2311, Predicted membrane protein Function unknown 58583670 Common - IS1404 transposase XOO4047 109 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582355 Common mutL DNA mismatch repair protein XOO2732 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 58584086 Common - hypothetical protein XOO4463 19 COG4104 COG4104, Uncharacterized conserved protein Function unknown 58580953 Common hslR heat shock protein 15 homolog XOO1330 97 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 58580109 Common pcaC 4-carboxymuconolactone decarboxylase XOO0486 87 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 58583558 Common - two-component system regulatory protein XOO3935 209 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58580301 Common - hypothetical protein XOO0678 30 None None None 121632081 Common - hypothetical protein XOO4778 4 COG5305 COG5305, Predicted membrane protein Function unknown 58580349 Common atpB F0F1 ATP synthase subunit A XOO0726 200 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 58579711 Common hrpB3 HrpB3 XOO0088 40 COG4669 EscJ, Type III secretory pathway, lipoprotein EscJ Intracellular trafficking and secretion 58583615 Common hslU ATP-dependent protease ATP-binding subunit XOO3992 213 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 58583667 Common - prolyl oligopeptidase family protein XOO4044 123 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 58580116 Common - hypothetical protein XOO0493 32 COG3087 FtsN, Cell division protein Cell division and chromosome partitioning 58583416 Common cirA TonB-dependent receptor XOO3793 33 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58580057 Pathogen - hypothetical protein XOO0434 1 None None None 58579973 Common ubiB putative ubiquinone biosynthesis protein UbiB XOO0350 185 COG0661 AarF, Predicted unusual protein kinase General function prediction only 58581784 Common - pseudouridylate synthase XOO2161 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 58583856 Common - IS1478 transposase XOO4233 26 None None None 58581793 Common malE ABC transporter sugar binding protein XOO2170 93 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 58580756 Common pepP aminopeptidase P XOO1133 225 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 58582180 Common - hypothetical protein XOO2557 39 COG2915 COG2915, Uncharacterized protein involved in purine metabolism General function prediction only 58581761 Common - dioxygenase XOO2138 37 COG1791 COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 58581407 Common iroN TonB-dependent receptor XOO1784 58 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58582119 Common - IS1478 transposase XOO2496 18 None None None 121632074 Pathogen - hypothetical protein XOO4768 1 None None None 58580922 Common perM permease XOO1299 82 COG0628 PerM, Predicted permease General function prediction only 58582040 Common - hypothetical protein XOO2417 162 COG0316 IscA, Uncharacterized conserved protein Function unknown 58584207 Common - hypothetical protein XOO4584 15 COG4517 COG4517, Uncharacterized protein conserved in bacteria Function unknown 58581187 Common - hypothetical protein XOO1564 42 None None None 58580177 Pathogen - hypothetical protein XOO0554 1 None None None 58580634 Common - putative transposase XOO1011 19 None None None 58583696 Common - hypothetical protein XOO4073 8 COG1331 COG1331, Highly conserved protein containing a thioredoxin domain Posttranslational modification, protein turnover, chaperones 58581658 Common - putative ISXo8 transposase XOO2035 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 122879035 Common - hypothetical protein XOO0663 16 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 58580369 Common glmS D-fructose-6-phosphate amidotransferase XOO0746 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 58583638 Common - aminopeptidase XOO4015 49 COG2234 Iap, Predicted aminopeptidases General function prediction only 58582039 Common rpsF 30S ribosomal protein S6 XOO2416 192 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 58580327 Common - hypothetical protein XOO0704 178 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 58581991 Common amiC N-acetylmuramoyl-L-alanine amidase XOO2368 173 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 58582755 Common yveA amino acid permease XOO3132 173 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 122879225 Common - hypothetical protein XOO2880 30 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582563 Common recX recombination regulator RecX XOO2940 54 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 58580570 Common thiC thiamine biosynthesis protein ThiC XOO0947 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 58582110 Common - L-lysine 6-aminotransferase XOO2487 228 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 58583029 Pathogen - hypothetical protein XOO3406 1 None None None 58582693 Common - hypothetical protein XOO3070 27 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 58582535 Common - hypothetical protein XOO2912 15 None None None 58583196 Common rplN 50S ribosomal protein L14 XOO3573 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 58583002 Common - Transposase and inactivated derivatives, IS30 family XOO3379 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58583045 Common - oxidoreductase XOO3422 23 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 58582296 Common argE acetylornithine deacetylase XOO2673 90 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 58582913 Common slyD peptidyl-prolyl cis-trans isomerase XOO3290 127 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 58583121 Common - VGR-related protein XOO3498 11 COG4253 COG4253, Uncharacterized protein conserved in bacteria Function unknown 58579671 Common tnpA transposase XOO0048 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58579931 Common yrbD toluene tolerance protein XOO0308 96 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 161898992 Common mtnA methylthioribose-1-phosphate isomerase XOO2407 131 COG0182 COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family Translation, ribosomal structure and biogenesis 58581845 Common - hypothetical protein XOO2222 33 COG1983 PspC, Putative stress-responsive transcriptional regulator Transcription / Signal transduction mechanisms 58580308 Pathogen - hypothetical protein XOO0685 1 None None None 58580422 Common ipsJ IpsJ protein XOO0799 95 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 58580379 Common copA copper resistance protein A precursor XOO0756 120 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 58581833 Common yggB small conductance mechanosensitive ion channel XOO2210 136 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 58582787 Common - putative transposase XOO3164 25 None None None 58584054 Common cirA TonB-dependent receptor XOO4431 23 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58583969 Common frp FMN oxidoreductase XOO4346 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 58583952 Common - oxidoreductase XOO4329 76 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 161899024 Common tyrB aromatic amino acid aminotransferase XOO0016 95 COG1448 TyrB, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 58583650 Pathogen - endonuclease XOO4027 1 None None None 58580503 Common fabD acyl-carrier-protein S-malonyltransferase XOO0880 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 58583603 Common - ElaA XOO3980 55 COG2153 ElaA, Predicted acyltransferase General function prediction only 58581803 Common rpsA 30S ribosomal protein S1 XOO2180 215 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 58583815 Common - putative transposase XOO4192 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580956 Common - putative ISXo8 transposase XOO1333 33 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582705 Common vipA polysaccharide biosynthetic protein XOO3082 205 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 58582142 Common - Transposase and inactivated derivatives XOO2519 4 None None None 58579630 Common - hypothetical protein XOO0007 9 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 58582945 Common - hypothetical protein XOO3322 167 COG1576 COG1576, Uncharacterized conserved protein Function unknown 58584194 Common - transposase XOO4571 34 None None None 58583631 Common algR two-component system regulatory protein XOO4008 215 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 58581174 Common - hypothetical protein XOO1551 179 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 58582802 Common gumB GumB XOO3179 118 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 58583298 Common purF amidophosphoribosyltransferase XOO3675 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 58580680 Common - 3-deoxy-D-manno-octulosonic-acid kinase XOO1057 20 COG0478 COG0478, RIO-like serine/threonine protein kinase fused to N-terminal HTH domain Signal transduction mechanisms 122879265 Common - hypothetical protein XOO3509 7 None None None 122879367 Common yhdG amino acid transporter XOO4572 125 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 58581015 Common - IS1404 transposase XOO1392 20 None None None 58580046 Common phoP two-component system regulatory protein XOO0423 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 161898998 Common mmuM homocysteine methyltransferase XOO1930 99 COG2040 MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) Amino acid transport and metabolism 58581293 Common - hypothetical protein XOO1670 78 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 58584047 Common mtlD mannitol dehydrogenase XOO4424 88 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 122879098 Common - acetyltransferase XOO1401 23 COG0456 RimI, Acetyltransferases General function prediction only 58584016 Common - hypothetical protein XOO4393 87 COG2945 COG2945, Predicted hydrolase of the alpha/beta superfamily General function prediction only 58580736 Common - hypothetical protein XOO1113 23 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 58583569 Pathogen - hypothetical protein XOO3946 1 None None None 58584138 Common ylmA ABC transporter ATP-binding protein XOO4515 249 COG1119 ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA Inorganic ion transport and metabolism 58582752 Common - hypothetical protein XOO3129 2 None None None 58582243 Common fleN flagellar biosynthesis switch protein XOO2620 110 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 58582922 Common ispA geranyltranstransferase; farnesyl-diphosphate synthase XOO3299 242 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 122879308 Common hslV ATP-dependent protease peptidase subunit XOO3993 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 58579825 Pathogen - transposase XOO0202 1 None None None 58580193 Pathogen - hypothetical protein XOO0570 1 None None None 122879262 Common - type I restriction-modification system endonuclease XOO3452 135 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 121632099 Pathogen - hypothetical protein XOO4806 1 None None None 122879163 Common - hypothetical protein XOO2196 40 COG3002 COG3002, Uncharacterized protein conserved in bacteria Function unknown 121632110 Common - putative ISXo8 transposase XOO4842 5 None None None 58583960 Common - hypothetical protein XOO4337 67 COG1636 COG1636, Uncharacterized protein conserved in bacteria Function unknown 161898963 Common hmsR N-glycosyltransferase PgaC XOO3913 194 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 58582493 Common rpfC RpfC XOO2870 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58579696 Common - putative ISXo8 transposase XOO0073 33 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583102 Common hcp hypothetical protein XOO3479 20 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 58580023 Common - hypothetical protein XOO0400 4 None None None 58581235 Pathogen - hypothetical protein XOO1612 4 None None None 58581512 Common - ISxac1 transposase XOO1889 15 None None None 58580197 Pathogen - hypothetical protein XOO0574 1 None None None 122879015 Common hemB delta-aminolevulinic acid dehydratase XOO0402 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 58583822 Common - hypothetical protein XOO4199 5 None None None 58580227 Pathogen - hypothetical protein XOO0604 2 None None None 58580142 Common - two-component system sensor protein XOO0519 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58583705 Common - hypothetical protein XOO4082 8 None None None 58584149 Pathogen - hypothetical protein XOO4526 1 None None None 58581666 Common sucB dihydrolipoamide acetyltransferase XOO2043 196 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 58581753 Common - IS1478 transposase XOO2130 28 None None None 58582308 Common eutC ethanolamine ammonia-lyase light chain XOO2685 49 COG4302 EutC, Ethanolamine ammonia-lyase, small subunit Amino acid transport and metabolism 121632119 Pathogen - hypothetical protein XOO4887 1 None None None 58583847 Common - transposase XOO4224 30 None None None 58581213 Common fic Cell filamentation protein Fic XOO1590 10 COG2184 Fic, Protein involved in cell division Cell division and chromosome partitioning 58582083 Common oprO polyphosphate-selective porin O XOO2460 23 COG3746 OprP, Phosphate-selective porin Inorganic ion transport and metabolism 58581336 Common - phage-related capsid scaffold protein XOO1713 22 None None None 122879087 Common - hypothetical protein XOO1348 6 None None None 58583747 Common folB dihydroneopterin aldolase XOO4124 107 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 58581702 Common - acetylhydrolase XOO2079 17 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 58580870 Common - hypothetical protein XOO1247 28 COG1842 PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription Transcription / Signal transduction mechanisms 58582649 Common - IS1404 transposase XOO3026 57 None None None 161898981 Common dbpA ATP-dependent RNA helicase DbpA XOO2716 240 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 122879188 Common - acetyltransferase XOO2442 58 COG3153 COG3153, Predicted acetyltransferase General function prediction only 122879245 Common gumG GumG XOO3174 4 COG3594 NolL, Fucose 4-O-acetylase and related acetyltransferases Carbohydrate transport and metabolism 58579701 Pathogen hrpD5 HrpD5 XOO0078 4 None None None 122879233 Common - carboxypeptidase-related protein XOO2972 38 COG2939 COG2939, Carboxypeptidase C (cathepsin A) Amino acid transport and metabolism 58583249 Pathogen - hypothetical protein XOO3626 2 None None None 58580215 Common - hypothetical protein XOO0592 29 COG3428 COG3428, Predicted membrane protein Function unknown 58582050 Common - hypothetical protein XOO2427 13 COG1289 COG1289, Predicted membrane protein Function unknown 161899012 Common prpB 2-methylisocitrate lyase XOO0892 130 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 58581818 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein XOO2195 239 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 161898982 Common argC N-acetyl-gamma-glutamyl-phosphate reductase XOO2670 214 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 58579899 Common - putative transposase XOO0276 3 None None None 58584255 Common fecA TonB-dependent receptor XOO4632 15 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 58580184 Common dsbD C-type cytochrome biogenesis protein (copper tolerance) XOO0561 113 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 58580331 Common - hypothetical protein XOO0708 9 COG1647 COG1647, Esterase/lipase General function prediction only 58582528 Common yeiP elongation factor P XOO2905 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 122879181 Common hutC histidine utilization repressor XOO2395 106 COG2188 PhnF, Transcriptional regulators Transcription 58581789 Common - hypothetical protein XOO2166 27 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 161898988 Common - recombination factor protein RarA XOO2542 224 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 121632145 Pathogen - hypothetical protein XOO4955 1 None None None 58580887 Common - hydrolase XOO1264 120 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 161899001 Common mtgA monofunctional biosynthetic peptidoglycan transglycosylase XOO4787 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 58583941 Common - putative acetyl transferase XOO4318 196 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 58582995 Common thiG thiazole synthase XOO3372 167 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 58582322 Common pglA polygalacturonase XOO2699 24 COG5434 PGU1, Endopygalactorunase Cell envelope biogenesis, outer membrane 58581771 Common cycL C-type cytochrome biogenesis protein XOO2148 90 COG3088 CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes Posttranslational modification, protein turnover, chaperones 58581734 Common - putative ISXo8 transposase XOO2111 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583453 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase XOO3830 208 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 58583464 Common dld D-lactate dehydrogenase XOO3841 200 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 58582175 Common infA translation initiation factor IF-1 XOO2552 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 58581145 Pathogen - hypothetical protein XOO1522 1 None None None 122879244 Common - ketoglutarate semialdehyde dehydrogenase XOO3136 86 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 58580128 Common parA chromosome partitioning protein XOO0505 223 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 58581285 Common kup potassium uptake protein XOO1662 88 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 58581414 Common - hypothetical protein XOO1791 63 COG1742 COG1742, Uncharacterized conserved protein Function unknown 58582193 Common flgC flagellar basal body rod protein FlgC XOO2570 126 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 121632088 Pathogen emrA MFS transporter XOO4789 1 None None None 58583320 Common - oxidoreductase XOO3697 100 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 58581262 Common - hypothetical protein XOO1639 62 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 58582348 Common - hypothetical protein XOO2725 162 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 58580244 Common tnpA transposase XOO0621 33 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58584174 Common - hypothetical protein XOO4551 53 COG3791 COG3791, Uncharacterized conserved protein Function unknown 58581725 Common - putative ISXo8 transposase XOO2102 11 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580787 Common - transposase XOO1164 52 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58584188 Common fldZ hypothetical protein XOO4565 64 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 58582883 Common - 2-hydroxyacid dehydrogenase XOO3260 228 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 122879155 Common kgd alpha-ketoglutarate decarboxylase XOO2044 147 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 58580203 Common - hypothetical protein XOO0580 19 COG1714 COG1714, Predicted membrane protein/domain Function unknown 58581468 Common - enoyl-CoA hydratase XOO1845 116 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 58582650 Common - IS1404 transposase XOO3027 55 None None None 58582287 Common gaa glutaryl-7-ACA acylase precursor XOO2664 59 COG2936 COG2936, Predicted acyl esterases General function prediction only 58581601 Common - pili assembly chaperone XOO1978 18 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 58582073 Common - peptidyl-prolyl cis-trans isomerase XOO2450 3 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 58581691 Common - hypothetical protein XOO2068 6 None None None 58582662 Common - hypothetical protein XOO3039 132 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 58579989 Common - putative ISXo8 transposase XOO0366 25 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 122879080 Common gabP amino acid transporter XOO1270 110 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 58583757 Common - hypothetical protein XOO4134 14 None None None 58583070 Common - hypothetical protein XOO3447 7 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 58583677 Common purC phosphoribosylaminoimidazole-succinocarboxamide synthase XOO4054 142 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 58581348 Common hrpA ATP-dependent RNA helicase XOO1725 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 58579771 Common - putative transposase XOO0148 30 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 122879079 Common - proline imino-peptidase XOO1269 88 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 58581931 Common sdhA succinate dehydrogenase flavoprotein subunit XOO2308 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 58584232 Pathogen - hypothetical protein XOO4609 1 None None None 122879116 Common - hypothetical protein XOO1607 20 COG2252 COG2252, Permeases General function prediction only 58579769 Common - IS1478 transposase XOO0146 14 None None None 58580975 Common - hypothetical protein XOO1352 131 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 58581072 Common - hypothetical protein XOO1449 18 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 58584213 Pathogen - hypothetical protein XOO4590 1 None None None 58582987 Pathogen - hypothetical protein XOO3364 1 None None None 58581240 Common - hypothetical protein XOO1617 71 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 58581574 Common - hypothetical protein XOO1951 8 None None None 58581689 Common ugd UDP-glucose dehydrogenase XOO2066 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 58582936 Common - hypothetical protein XOO3313 51 COG3164 COG3164, Predicted membrane protein Function unknown 58581324 Pathogen - hypothetical protein XOO1701 3 None None None 122879207 Common - hypothetical protein XOO2741 101 COG1262 COG1262, Uncharacterized conserved protein Function unknown 58583423 Common - sulfotransferase XOO3800 13 None None None 58579902 Common - putative ISXo8 transposase XOO0279 25 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58579909 Common - hypothetical protein XOO0286 85 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 58579922 Common mutM formamidopyrimidine-DNA glycosylase XOO0299 180 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 58580905 Common ptsN nitrogen regulatory IIA protein XOO1282 126 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 58581000 Common - hypothetical protein XOO1377 2 COG3152 COG3152, Predicted membrane protein Function unknown 58582829 Common - short chain dehydrogenase XOO3206 53 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 58580863 Common - Transposase and inactivated derivatives, IS30 family XOO1240 56 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58580489 Common - hypothetical protein XOO0866 48 COG1343 COG1343, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 58582161 Common fadA acetyl-CoA acetyltransferase XOO2538 181 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 58581539 Common - dehydrogenase XOO1916 71 COG2907 COG2907, Predicted NAD/FAD-binding protein General function prediction only 58584122 Common - hypothetical protein XOO4499 23 COG2353 COG2353, Uncharacterized conserved protein Function unknown 58580381 Common cysM cysteine synthase XOO0758 213 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 122879070 Common citM Mg++/citrate complex transporter XOO1103 36 COG2851 CitM, H+/citrate symporter Energy production and conversion 58581557 Pathogen - hypothetical protein XOO1934 1 None None None 58583146 Common - hypothetical protein XOO3523 34 COG1876 VanY, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 58582505 Common - transposase XOO2882 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58583685 Common - hypothetical protein XOO4062 23 COG4539 COG4539, Predicted membrane protein Function unknown 58582616 Common - lipopolysaccharide biosynthesis protein XOO2993 18 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 58583725 Common tcbD chloromuconate cycloisomerase XOO4102 144 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 58580889 Common - endoproteinase Arg-C XOO1266 13 None None None 58580445 Common - putative ISXo8 transposase XOO0822 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583060 Common - hypothetical protein XOO3437 60 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 58583353 Common - acyl-CoA synthetase XOO3730 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 58580677 Common - Integrase XOO1054 88 None None None 58581827 Common tlpC methyl-accepting chemotaxis protein XOO2204 83 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 58582224 Common fliF flagellar MS-ring protein XOO2601 124 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 58581432 Common gtrB glucosyl transferase XOO1809 181 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 58583892 Common - hypothetical protein XOO4269 12 COG4727 COG4727, Uncharacterized protein conserved in bacteria Function unknown 58580794 Common - hypothetical protein XOO1171 52 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 58582409 Common ordL oxidoreductase XOO2786 85 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 58582772 Common - IS1478 transposase XOO3149 18 None None None 122879103 Common - hydrolase XOO1445 128 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 58580264 Common - transcriptional regulator NtrC family XOO0641 189 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 58583346 Common - gluconolactonase precursor XOO3723 40 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 58581964 Common dcp peptidyl-dipeptidase XOO2341 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 58582819 Common pilY1 PilY1 XOO3196 32 COG3419 PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 Cell motility and secretion / Intracellular trafficking and secretion 58582200 Common flgI flagellar basal body P-ring protein XOO2577 104 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 58580093 Common mgtE Mg++ transporter XOO0470 170 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 58580582 Pathogen - transposase XOO0959 1 None None None 58580928 Common - putative transposase XOO1305 3 None None None 58581862 Pathogen - hypothetical protein XOO2239 2 None None None 58579669 Pathogen - metalloprotease XOO0046 1 None None None 121632117 Pathogen - hypothetical protein XOO4885 1 None None None 58581915 Common uvrC excinuclease ABC subunit C XOO2292 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 58580861 Common - avirulence protein XOO1238 9 None None None 58580080 Common - putative transposase XOO0457 45 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 121632138 Pathogen - hypothetical protein XOO4946 1 None None None 58583981 Common - transcriptional regulator, LysR family XOO4358 6 None None None 58579877 Common plsB glycerol-3-phosphate acyltransferase XOO0254 49 COG2937 PlsB, Glycerol-3-phosphate O-acyltransferase Lipid metabolism 58582153 Common - hypothetical protein XOO2530 116 COG1520 COG1520, FOG: WD40-like repeat Function unknown 58582415 Common - putative transposase XOO2792 41 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583478 Pathogen - hypothetical protein XOO3855 1 None None None 58583521 Common - putative transposase XOO3898 24 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579918 Common - IS1404 transposase XOO0295 86 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58584083 Pathogen - hypothetical protein XOO4460 1 None None None 58581874 Common hisS histidyl-tRNA synthetase XOO2251 248 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 58581634 Common - transposase XOO2011 31 None None None 58579929 Common - hypothetical protein XOO0306 6 COG3113 COG3113, Predicted NTP binding protein (contains STAS domain) General function prediction only 58581639 Common alg2 glycosyltransferase XOO2016 21 COG1819 COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase Carbohydrate transport and metabolism / Signal transduction mechanisms 58583903 Common - hypothetical protein XOO4280 3 None None None 122879216 Common - hypothetical protein XOO2794 40 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 58583555 Common ptr1 pteridine reductase XOO3932 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 58580722 Common fyuA TonB-dependent receptor XOO1099 49 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58583081 Common - hypothetical protein XOO3458 24 COG4127 COG4127, Uncharacterized conserved protein Function unknown 58583179 Common - putative transposase XOO3556 44 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582858 Common nuoB NADH dehydrogenase subunit B XOO3235 191 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 58579908 Common - transposase XOO0285 64 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58582957 Pathogen - transposase XOO3334 1 None None None 58581393 Common - hypothetical protein XOO1770 26 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 58582075 Common crt 3-hydroxybutyryl-CoA dehydratase XOO2452 181 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 58579706 Pathogen hpaP hrpC3 XOO0083 3 None None None 58580010 Common - cysteine proteinase XOO0387 40 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 58580473 Common xpsH general secretion pathway protein H XOO0850 12 COG4970 FimT, Tfp pilus assembly protein FimT Cell motility and secretion / Intracellular trafficking and secretion 58580671 Common - hypothetical protein XOO1048 6 None None None 58580099 Common - flavodoxin XOO0476 5 COG0716 FldA, Flavodoxins Energy production and conversion 122879257 Common - hypothetical protein XOO3426 5 None None None 161898978 Common dgoA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase XOO2917 122 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 58583643 Pathogen tsr chemotaxis protein XOO4020 1 None None None 58582930 Common - putative ISXo8 transposase XOO3307 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580071 Common prtI ECF sigma factor XOO0448 39 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 58582410 Common rrpX transcriptional regulator XOO2787 211 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 58583899 Common gnl gluconolactonase precursor XOO4276 64 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 58581165 Pathogen - hypothetical protein XOO1542 1 None None None 121632045 Common - IS1478 transposase XOO4735 17 None None None 58583099 Common - hypothetical protein XOO3476 46 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 58581686 Common - transcriptional regulator gntR family XOO2063 112 COG1725 COG1725, Predicted transcriptional regulators Transcription 58581842 Common pssA CDP-diacylglycerol-serine o-phosphatidyltransferase XOO2219 148 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 58583254 Common - RNA polymerase factor sigma-70 XOO3631 28 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 122878982 Common - hypothetical protein XOO0109 61 COG2354 COG2354, Uncharacterized protein conserved in bacteria Function unknown 58582239 Common - GGDEF family protein XOO2616 175 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 58582170 Common trxB thioredoxin reductase XOO2547 245 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 58582605 Common - hypothetical protein XOO2982 5 COG1493 HprK, Serine kinase of the HPr protein, regulates carbohydrate metabolism Signal transduction mechanisms 58580832 Pathogen - hypothetical protein XOO1209 1 None None None 58581507 Common - hypothetical protein XOO1884 38 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 58582551 Common thiD phosphomethylpyrimidine kinase XOO2928 217 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 58582831 Common sodB iron superoxide dismutase XOO3208 207 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 58580856 Common - Oar protein XOO1233 20 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 58583483 Common glyA serine hydroxymethyltransferase XOO3860 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 58584061 Common blc outer membrane lipoprotein Blc XOO4438 38 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 58582651 Common - putative transposase XOO3028 86 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583228 Common lolB outer membrane lipoprotein LolB XOO3605 42 COG3017 LolB, Outer membrane lipoprotein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 58583711 Common hemD uroporphyrinogen-III synthase XOO4088 18 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 58582703 Common fkpA FKBP-type peptidyl-prolyl cis-trans isomerase XOO3080 152 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 58582486 Common - hypothetical protein XOO2863 11 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 58580162 Common purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase XOO0539 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 58579655 Common - transposase XOO0032 30 None None None 58580780 Common pilM fimbrial assembly membrane protein XOO1157 71 COG4972 PilM, Tfp pilus assembly protein, ATPase PilM Cell motility and secretion / Intracellular trafficking and secretion 58582898 Common - hypothetical protein XOO3275 56 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 58581184 Common - hypothetical protein XOO1561 8 COG3713 OmpV, Outer membrane protein V Cell envelope biogenesis, outer membrane 58579841 Common - hypothetical protein XOO0218 8 None None None 121632102 Pathogen - hypothetical protein XOO4821 1 None None None 58583052 Pathogen - IS1595 transposase XOO3429 1 None None None 58580897 Common qxtB quinol oxidase subunit II XOO1274 151 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 58580921 Common - hypothetical protein XOO1298 14 COG3249 COG3249, Uncharacterized protein conserved in bacteria Function unknown 58580146 Common - hypothetical protein XOO0523 17 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 58580880 Common soxR transcriptional regulator soxR family XOO1257 88 COG0789 SoxR, Predicted transcriptional regulators Transcription 121632068 Pathogen - hypothetical protein XOO4759 1 None None None 58582464 Common - transposase XOO2841 32 None None None 58583225 Common rplY 50S ribosomal protein L25/general stress protein Ctc XOO3602 192 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 58580079 Common bioF 8-amino-7-oxononanoate synthase XOO0456 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 58583759 Common - hypothetical protein XOO4136 19 None None None 121632050 Common - hypothetical protein XOO4740 9 None None None 58580698 Common def peptide deformylase XOO1075 209 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 58583542 Common gluP glucose-galactose transporter XOO3919 48 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 58581759 Common - hypothetical protein XOO2136 12 None None None 122879129 Common pilG pilus protein XOO1746 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58581905 Common - transposase XOO2282 3 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 122879335 Pathogen - hypothetical protein XOO4282 1 None None None 58583284 Common - putative transposase XOO3661 38 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583622 Common ptrB protease II; oligopeptidase B XOO3999 100 COG1770 PtrB, Protease II Amino acid transport and metabolism 58581816 Common folD bifunctional methylenetetrahydrofolate dehydrogenase/ methenyltetrahydrofolate cyclohydrolase XOO2193 223 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 58580821 Common - putative ISXo8 transposase XOO1198 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58584007 Common - hypothetical protein XOO4384 24 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 58583439 Common - hypothetical protein XOO3816 204 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 122879321 Common - N-acetylmuramoyl-L-alanine amidase XOO4100 107 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 121632025 Pathogen - hypothetical protein XOO4710 1 None None None 58583383 Common - putative transposase XOO3760 46 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580100 Common trxA thioredoxin XOO0477 11 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 58580320 Pathogen - hypothetical protein XOO0697 1 None None None 58583065 Common lexA LexA repressor XOO3442 165 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 58582011 Common serC phosphoserine aminotransferase XOO2388 109 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 122879150 Common rpsB 30S ribosomal protein S2 XOO1977 227 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 58581227 Common bfeA ferric enterobactin receptor XOO1604 93 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 58583466 Common kdpD two-component system sensor protein XOO3843 220 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 58582192 Common flgB flagellar basal body rod protein FlgB XOO2569 84 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 122879010 Pathogen - hypothetical protein XOO0343 3 None None None 121632133 Pathogen - hypothetical protein YXOOp15 1 COG5620 COG5620, Uncharacterized conserved protein Function unknown 58581947 Common - putative transposase XOO2324 32 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582980 Common tnpA transposase XOO3357 21 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58581022 Common - IS1479 transposase XOO1399 19 None None None 58581419 Pathogen - hypothetical protein XOO1796 1 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 58582878 Common truA tRNA pseudouridine synthase A XOO3255 222 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 58582298 Common argG argininosuccinate synthase XOO2675 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 58582108 Common queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase XOO2485 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 58579960 Common - hypothetical protein XOO0337 67 COG1971 COG1971, Predicted membrane protein Function unknown 58582305 Common dksA DnaK supressor XOO2682 132 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 122879157 Common purB adenylosuccinate lyase XOO2048 229 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 122879194 Common cirA TonB-dependent receptor XOO2500 30 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58580354 Common atpG F0F1 ATP synthase subunit gamma XOO0731 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 58581095 Common mfd transcription-repair coupling factor XOO1472 220 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 58584153 Common - hypothetical protein XOO4530 20 COG4798 COG4798, Predicted methyltransferase General function prediction only 58581196 Common - ISxac1 transposase XOO1573 15 None None None 58580414 Common etfB electron transfer flavoprotein beta subunit XOO0791 152 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 58583791 Common - hypothetical protein XOO4168 14 COG4715 COG4715, Uncharacterized conserved protein Function unknown 58584163 Common - xylosidase XOO4540 39 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 58581310 Pathogen - hypothetical protein XOO1687 2 None None None 58579894 Common fpvA ferripyoverdine receptor XOO0271 46 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 58580544 Common msi147 hypothetical protein XOO0921 4 None None None 122879347 Common - hypothetical protein XOO4355 56 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 122878996 Common speA arginine decarboxylase XOO0220 153 COG1166 SpeA, Arginine decarboxylase (spermidine biosynthesis) Amino acid transport and metabolism 58584244 Common ttuB MFS transporter XOO4621 140 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 58582814 Common - IS1389 transposase XOO3191 40 None None None 58582245 Common cheY chemotaxis protein XOO2622 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 58582453 Common motC flagellar motor protein XOO2830 108 COG1291 MotA, Flagellar motor component Cell motility and secretion 58583410 Common - hypothetical protein XOO3787 211 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 58579860 Common - hypothetical protein XOO0237 2 None None None 58581889 Common - Putative phage replication protein RstA XOO2266 9 COG2946 COG2946, Putative phage replication protein RstA DNA replication, recombination, and repair 58581055 Common - hypothetical protein XOO1432 80 COG0384 COG0384, Predicted epimerase, PhzC/PhzF homolog General function prediction only 58580962 Common - IS1404 transposase XOO1339 95 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580325 Common rsmC ribosomal RNA small subunit methyltransferase C XOO0702 80 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 58581489 Common - hypothetical protein XOO1866 59 COG3046 COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase General function prediction only 58584010 Common - cytochrome C5 XOO4387 36 COG3245 CycB, Cytochrome c5 Energy production and conversion 58580765 Common - hypothetical protein XOO1142 36 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 58580528 Common - putative ISXo8 transposase XOO0905 14 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580990 Common yheS ABC transporter ATP-binding protein XOO1367 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 58581502 Common - sensor histidine kinase XOO1879 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 58583038 Common pgk phosphoglycerate kinase XOO3415 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 58584237 Common - hypothetical protein XOO4614 5 None None None 58583732 Common - cationic amino acid transporter XOO4109 172 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 58579751 Common - ISxac1 transposase XOO0128 15 None None None 58580656 Common clpP ATP-dependent Clp protease proteolytic subunit XOO1033 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 58579799 Common - hypothetical protein XOO0176 8 None None None 58582353 Common - hypothetical protein XOO2730 52 COG3735 COG3735, Uncharacterized protein conserved in bacteria Function unknown 161899006 Common rpsP 30S ribosomal protein S16 XOO1325 213 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 58579745 Common - transposase XOO0122 32 None None None 58580294 Common - hypothetical protein XOO0671 69 COG2335 COG2335, Secreted and surface protein containing fasciclin-like repeats Cell envelope biogenesis, outer membrane 121632031 Pathogen - hypothetical protein XOO4718 1 None None None 58583403 Pathogen phuR outer membrane hemin receptor XOO3780 1 None None None 58580558 Common - transcriptional regulator lysR family XOO0935 190 COG0583 LysR, Transcriptional regulator Transcription 58583986 Common - hypothetical protein XOO4363 56 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 58582324 Common cbbZ phosphoglycolate phosphatase XOO2701 168 COG0546 Gph, Predicted phosphatases General function prediction only 58582578 Common pcm L-isoaspartate protein carboxylmethyltransferase type II XOO2955 153 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 58582862 Common - dehydrogenase XOO3239 235 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 58583109 Common - hypothetical protein XOO3486 51 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 122879059 Common mpl UDP-N-acetylmuramate-L-alanine ligase XOO0964 206 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 58583157 Common colS two-component system sensor protein XOO3534 211 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58581612 Common dapE succinyl-diaminopimelate desuccinylase XOO1989 199 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 122879179 Common nodV nodulation protein XOO2378 220 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 58582939 Common maf Maf-like protein XOO3316 196 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 58583100 Common - hypothetical protein XOO3477 48 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 121632038 Common - putative transposase XOO4728 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 122879224 Common pcaD beta-ketoadipate enol-lactone hydrolase XOO2861 111 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 58583876 Pathogen - hypothetical protein XOO4253 1 COG5153 CVT17, Putative lipase essential for disintegration of autophagic bodies inside the vacuole Intracellular trafficking and secretion / Lipid metabolism 58581472 Common algU RNA polymerase sigma factor RpoE XOO1849 171 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 122879121 Common radA DNA repair protein RadA XOO1648 206 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 58584205 Common ompP1 outer membrane protein XOO4582 75 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 122879063 Common gloB hydroxyacylglutathione hydrolase XOO1039 191 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 58584202 Common - possible transposase XOO4579 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879298 Common dsbA thiol:disulfide interchange protein XOO3884 63 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 58580132 Common exoA exodeoxyribonuclease III XOO0509 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 58583363 Common visC 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase XOO3740 124 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 58584217 Common - hypothetical protein XOO4594 20 COG4924 COG4924, Uncharacterized protein conserved in bacteria Function unknown 58581763 Common yhdG cationic amino acid transporter XOO2140 189 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 58582672 Common - hypothetical protein XOO3049 20 COG4455 ImpE, Protein of avirulence locus involved in temperature-dependent protein secretion General function prediction only 58581083 Common gpm phosphoglyceromutase XOO1460 158 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 58584024 Common - hypothetical protein XOO4401 7 None None None 58583234 Common - transcriptional regulator XOO3611 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 58580615 Common - transposase XOO0992 52 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581625 Common mlrB MlrB XOO2002 65 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 161898971 Common nuoG NADH dehydrogenase subunit G XOO3229 187 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 58579861 Common - hypothetical protein XOO0238 4 None None None 58583018 Common - RND efflux membrane fusion protein XOO3395 172 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 121632063 Common - hypothetical protein XOO4754 21 None None None 58581104 Pathogen creD inner membrane protein XOO1481 1 COG4452 CreD, Inner membrane protein involved in colicin E2 resistance Defense mechanisms 58579965 Common - transposase XOO0342 32 None None None 58581042 Common pilU twitching motility protein XOO1419 207 COG5008 PilU, Tfp pilus assembly protein, ATPase PilU Cell motility and secretion / Intracellular trafficking and secretion 58583997 Common tnpA transposase XOO4374 33 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58581482 Common rumA 23S rRNA 5-methyluridine methyltransferase XOO1859 198 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 58581655 Common dnaJ DnaJ XOO2032 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 58582788 Common tISRso5 ISRSO5-transposase protein XOO3165 51 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582429 Common - transposase and inactivated derivative XOO2806 17 None None None 58582434 Common fruK 1-phosphofructokinase (fructose 1-phosphate kinase) XOO2811 92 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 58580842 Common argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein XOO1219 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 58582129 Common - ferredoxin XOO2506 107 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 58583882 Common - hypothetical protein XOO4259 33 None None None 58582136 Common - putative ISXo8 transposase XOO2513 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583348 Pathogen - hypothetical protein XOO3725 2 None None None 58581882 Common hisH imidazole glycerol phosphate synthase subunit HisH XOO2259 214 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 58583470 Pathogen - hypothetical protein XOO3847 1 None None None 58582738 Common btuB TonB-dependent receptor XOO3115 10 None None None 58581327 Common - hypothetical protein XOO1704 5 None None None 58582335 Common sodM superoxidase dismutase XOO2712 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 58582638 Common pthA3 avirulence protein XOO3015 12 None None None 58579758 Common pdhB dihydrolipoamide acyltransferase XOO0135 67 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 58583537 Pathogen - hypothetical protein XOO3914 2 None None None 58582944 Common - TonB-like protein XOO3321 38 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 58582069 Common - hypothetical protein XOO2446 26 COG3358 COG3358, Uncharacterized conserved protein Function unknown 58583267 Common hemK protoporphyrinogen oxidase XOO3644 229 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 58582474 Common - putative ISXo8 transposase XOO2851 26 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583022 Common xcysJ sulfite reductase flavoprotein XOO3399 95 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 58583260 Common - hypothetical protein XOO3637 78 COG0778 NfnB, Nitroreductase Energy production and conversion 58579737 Common - maltooligosyltrehalose trehalohydrolase XOO0114 171 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 58580849 Common tdcF TdcF XOO1226 21 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 58584088 Pathogen - hypothetical protein XOO4465 1 None None None 122879052 Common - hypothetical protein XOO0838 23 None None None 58583785 Common - hypothetical protein XOO4162 82 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 58582363 Common - putative transposase XOO2740 33 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580282 Common ybeC amino acid transporter XOO0659 185 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 58584126 Pathogen - hypothetical protein XOO4503 1 None None None 58582463 Common tsr chemotaxis protein XOO2840 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 58579792 Common xylR xylose repressor-like protein XOO0169 113 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 122879046 Common uptA fumarylacetoacetate hydrolase XOO0771 61 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 58582394 Common ybeX polar amino acid transporter XOO2771 217 COG4535 CorC, Putative Mg2+ and Co2+ transporter CorC Inorganic ion transport and metabolism 121632123 Pathogen - hypothetical protein YXOOp07 1 None None None 58584209 Common ctp carboxyl-terminal protease XOO4586 187 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 58579795 Common - hypothetical protein XOO0172 7 COG5255 COG5255, Uncharacterized protein conserved in bacteria Function unknown 58581362 Common ponB penicillin-binding protein 1B XOO1739 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 122879037 Common yjcE Na+:H+ antiporter XOO0675 102 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 58583751 Common dnaG DNA primase XOO4128 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 58581545 Common ydgM ferredoxin XOO1922 96 COG2878 COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB Energy production and conversion 58582694 Common - hypothetical protein XOO3071 30 COG3115 ZipA, Cell division protein Cell division and chromosome partitioning 58581791 Common - hypothetical protein XOO2168 3 None None None 58581180 Common yjl094C cation:proton antiporter XOO1557 204 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 58579718 Pathogen hpa1 Hpa1 XOO0095 1 None None None 122879160 Pathogen - hypothetical protein XOO2152 1 None None None 58580134 Pathogen - hypothetical protein XOO0511 1 None None None 122879247 Common - oxidoreductase XOO3248 55 COG3491 PcbC, Isopenicillin N synthase and related dioxygenases General function prediction only 58583854 Common ilvD dihydroxy-acid dehydratase XOO4231 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 58580769 Common - putative transposase XOO1146 46 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582548 Common - hypothetical protein XOO2925 2 None None None 58580049 Common - hypothetical protein XOO0426 49 COG4102 COG4102, Uncharacterized protein conserved in bacteria Function unknown 58580932 Common comEA DNA transport competence protein XOO1309 89 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 58581283 Common ruvC Holliday junction resolvase XOO1660 196 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 58581127 Common gltX glutamyl-tRNA synthetase XOO1504 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 161898991 Common sbcB exonuclease I XOO2430 51 COG2925 SbcB, Exonuclease I DNA replication, recombination, and repair 58581057 Pathogen - hypothetical protein XOO1434 1 None None None 58580814 Common - TonB-like protein XOO1191 39 COG4219 MecR1, Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component Transcription / Signal transduction mechanisms 58583485 Common - hypothetical protein XOO3862 3 COG5455 COG5455, Predicted integral membrane protein Function unknown 58583305 Common - non-hemolytic phospholipase C XOO3682 35 COG3511 PlcC, Phospholipase C Cell envelope biogenesis, outer membrane 58581437 Common hly3 hemolysin III XOO1814 119 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 58583798 Common - putative ISXo8 transposase XOO4175 12 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580581 Pathogen - hypothetical protein XOO0958 1 None None None 58582707 Common - putative ISXo8 transposase XOO3084 15 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58584119 Common - acetyltransferase XOO4496 117 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 58583371 Common ksgA dimethyladenosine transferase XOO3748 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 58582919 Common phoA alkaline phosphatase XOO3296 85 COG1785 PhoA, Alkaline phosphatase Inorganic ion transport and metabolism 58581077 Pathogen - hypothetical protein XOO1454 1 None None None 58580554 Pathogen - hypothetical protein XOO0931 1 None None None 58579933 Common yrbF toluene tolerance protein XOO0310 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 58583956 Common metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase XOO4333 140 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 58581847 Pathogen - hypothetical protein XOO2224 2 None None None 121632121 Pathogen - hypothetical protein YXOOp05 1 None None None 58580367 Common ycfV ABC transporter ATP-binding protein XOO0744 92 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 58583502 Common - putative transposase XOO3879 38 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580869 Common - hypothetical protein XOO1246 8 COG3789 COG3789, Uncharacterized protein conserved in bacteria Function unknown 58582940 Common bp26 outer membrane protein XOO3317 111 COG2968 COG2968, Uncharacterized conserved protein Function unknown 58580712 Common - putative ISXo8 transposase XOO1089 23 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582585 Common ftsB cell divison protein FtsB XOO2962 63 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 58579673 Pathogen - hypothetical protein XOO0050 1 None None None 58582303 Common tetV drug:proton antiporter XOO2680 112 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58580377 Common gloA lactoylglutathione lyase XOO0754 119 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 58583182 Common rpsD 30S ribosomal protein S4 XOO3559 216 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 58582032 Common lysS lysyl-tRNA synthetase XOO2409 206 COG2269 COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 58582411 Common yhjE metabolite transport protein XOO2788 121 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58582792 Common gumL GumL XOO3169 4 None None None 58584084 Common - DNA-binding protein XOO4461 8 None None None 58581259 Common - hypothetical protein XOO1636 62 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 58582052 Common - kynurenine 3-monooxygenase XOO2429 31 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 122879329 Common vanK MFS transporter XOO4221 144 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58583004 Common mscL large-conductance mechanosensitive channel XOO3381 142 COG1970 MscL, Large-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 58583447 Common ddl D-alanine--D-alanine ligase XOO3824 213 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 58583440 Common - hypothetical protein XOO3817 13 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 58583927 Common - IS1404 transposase XOO4304 123 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579692 Common - putative ISXo8 transposase XOO0069 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 122879209 Common yjbJ soluble lytic murein transglycosylase XOO2763 173 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 58582357 Common - hypothetical protein XOO2734 201 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 122878976 Common cbbFC fructose-1,6-bisphosphatase XOO0015 108 COG0158 Fbp, Fructose-1,6-bisphosphatase Carbohydrate transport and metabolism 58581123 Common nthA nitrilase XOO1500 2 COG0388 COG0388, Predicted amidohydrolase General function prediction only 58580625 Common - pseudouridylate synthase XOO1002 189 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 58584215 Common - IS1478 transposase XOO4592 29 None None None 58580463 Common dsbC disulfide isomerase XOO0840 68 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 58579677 Common tnp transposase XOO0054 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58580370 Common - hypothetical protein XOO0747 4 None None None 161898965 Common secA preprotein translocase subunit SecA XOO3818 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 58583991 Common - IS1404 transposase XOO4368 87 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879022 Common - integral membrane protein XOO0473 43 COG2899 COG2899, Uncharacterized protein conserved in bacteria Function unknown 58580595 Common ppiB peptidyl-prolyl cis-trans isomerase XOO0972 201 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 122879165 Common - putative ISXo8 transposase XOO2216 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58581172 Pathogen rfaY RNA polymerase ECF-type sigma factor XOO1549 1 None None None 58580664 Common rnhA ribonuclease H XOO1041 175 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 58581387 Common - transposase XOO1764 22 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580433 Pathogen - hypothetical protein XOO0810 2 None None None 58580748 Common - hypothetical protein XOO1125 61 COG2912 COG2912, Uncharacterized conserved protein Function unknown 58581598 Pathogen - hypothetical protein XOO1975 1 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 122879280 Common - hypothetical protein XOO3636 21 None None None 58583366 Common - hypothetical protein XOO3743 129 COG2096 COG2096, Uncharacterized conserved protein Function unknown 58582561 Common csrA carbon storage regulator XOO2938 80 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 58583384 Common - putative transposase XOO3761 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583740 Common - putative transposase XOO4117 31 None None None 58582043 Common - hypothetical protein XOO2420 2 None None None 58583694 Common - 4-hydroxyphenylpyruvate dioxygenase XOO4071 78 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 58580946 Common - 2-nitropropane dioxygenase XOO1323 49 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 58580321 Common - sensor histidine kinase XOO0698 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58582442 Common - ISxac3 transposase XOO2819 35 None None None 58580118 Common radC DNA repair protein RadC XOO0495 179 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 58583175 Common - IS1404 transposase XOO3552 112 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583194 Common rplX 50S ribosomal protein L24 XOO3571 211 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 58581303 Common int phage-related integrase XOO1680 13 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 122879176 Common - hypothetical protein XOO2358 4 COG4185 COG4185, Uncharacterized protein conserved in bacteria Function unknown 58582120 Common - hypothetical protein XOO2497 4 None None None 58582657 Common - hypothetical protein XOO3034 25 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 122879186 Common - hypothetical protein XOO2402 4 None None None 58579971 Common - pseudouridylate synthase XOO0348 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 58583672 Common trpE anthranilate synthase component I XOO4049 223 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 58580725 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase XOO1102 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 58583213 Common rpoC DNA-directed RNA polymerase subunit beta' XOO3590 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 58583020 Common raxP sulfate adenylyltransferase subunit 2 XOO3397 139 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 58582737 Common btuB TonB-dependent receptor XOO3114 13 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 58580259 Common - putative transposase XOO0636 42 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579637 Common cls cardiolipin synthetase XOO0014 154 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 58580269 Common - IS1404 transposase XOO0646 120 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579665 Common - hypothetical protein XOO0042 3 None None None 122879003 Common - putative transposase XOO0275 45 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583515 Common - ISxac1 transposase XOO3892 15 None None None 58581586 Common rnhB ribonuclease HII XOO1963 230 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 58583316 Common - pseudouridylate synthase XOO3693 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 58583556 Common folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine XOO3933 144 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 58580251 Common - hypothetical protein XOO0628 144 COG1360 MotB, Flagellar motor protein Cell motility and secretion 121632126 Pathogen - hypothetical protein YXOOp10 1 None None None 58582449 Common cirA TonB-dependent receptor XOO2826 48 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 161898966 Common kbl 2-amino-3-ketobutyrate coenzyme A ligase XOO3691 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 58582947 Common - DnaJ domain protein XOO3324 8 None None None 58581032 Common pfpI protease XOO1409 59 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 122879238 Pathogen - hypothetical protein XOO3065 2 COG3170 FimV, Tfp pilus assembly protein FimV Cell motility and secretion / Intracellular trafficking and secretion 58583414 Common metK S-adenosylmethionine synthetase XOO3791 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 58579837 Common - hypothetical protein XOO0214 51 COG2960 COG2960, Uncharacterized protein conserved in bacteria Function unknown 58581220 Common rluD ribosomal large subunit pseudouridine synthase D XOO1597 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 58583429 Common xcp protease XOO3806 16 COG4934 COG4934, Predicted protease Posttranslational modification, protein turnover, chaperones 58580809 Common - short chain dehydrogenase XOO1186 223 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 58580885 Common - hypothetical protein XOO1262 19 COG2850 COG2850, Uncharacterized conserved protein Function unknown 58582827 Common oar Oar protein XOO3204 28 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 122879093 Common bfeA ferric enterobactin receptor XOO1363 108 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 58582993 Common estA lipase; esterase XOO3370 63 COG3240 COG3240, Phospholipase/lecithinase/hemolysin Lipid metabolism / General function prediction only 58581729 Common - putative ISXo8 transposase XOO2106 26 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582568 Common hflX GTP-binding protein XOO2945 232 COG2262 HflX, GTPases General function prediction only 58579713 Pathogen hrpB5 type III secretion system protein XOO0090 3 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 58582910 Common - reductase XOO3287 99 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 58581397 Common - hypothetical protein XOO1774 17 None None None 58581555 Common - hypothetical protein XOO1932 74 COG1738 COG1738, Uncharacterized conserved protein Function unknown 58582346 Common - hypothetical protein XOO2723 52 COG4681 COG4681, Uncharacterized protein conserved in bacteria Function unknown 58581879 Common hisD histidinol dehydrogenase XOO2256 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 58581322 Common - phage-related tail protein XOO1699 25 COG4385 gpI, Bacteriophage P2-related tail formation protein General function prediction only 58580205 Common smg hypothetical protein XOO0582 40 COG2922 Smg, Uncharacterized protein conserved in bacteria Function unknown 58582178 Common mutT 7,8-dihydro-8-oxoguanine-triphosphatase XOO2555 53 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 58583240 Common - tryptophan repressor binding protein XOO3617 82 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 58581243 Common rplU 50S ribosomal protein L21 XOO1620 215 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 58582885 Common yfcB N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase XOO3262 211 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 58582929 Common - hypothetical protein XOO3306 7 None None None 58583974 Pathogen - hypothetical protein XOO4351 1 None None None 58580586 Common adk adenylate kinase XOO0963 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 58582276 Common cydC ABC transporter ATP-binding protein XOO2653 233 COG4987 CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 122879312 Common treA trehalase XOO4030 27 COG1626 TreA, Neutral trehalase Carbohydrate transport and metabolism 58581493 Common scoF cold shock protein XOO1870 181 COG1278 CspC, Cold shock proteins Transcription 58583764 Common ctaC cytochrome C oxidase subunit II XOO4141 159 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 58580785 Common - putative transposase XOO1162 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581509 Common - hypothetical protein XOO1886 23 None None None 58583679 Common - putative transposase XOO4056 44 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58584100 Common - microcystin dependent protein XOO4477 36 COG4675 MdpB, Microcystin-dependent protein Function unknown 58581852 Common ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase XOO2229 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 58583014 Common - transposase XOO3391 32 None None None 58579952 Common - polyvinylalcohol dehydrogenase XOO0329 85 COG1520 COG1520, FOG: WD40-like repeat Function unknown 58583765 Common - hypothetical protein XOO4142 4 COG5488 COG5488, Integral membrane protein Function unknown 122879319 Common nucH nuclease XOO4076 8 COG2374 COG2374, Predicted extracellular nuclease General function prediction only 58582057 Common - 5'-nucleotidase XOO2434 30 None None None 58583137 Common - hypothetical protein XOO3514 36 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 58582208 Pathogen - hypothetical protein XOO2585 1 None None None 58580037 Common - transposase XOO0414 30 None None None 58583027 Pathogen - hypothetical protein XOO3404 1 None None None 58580348 Pathogen - hypothetical protein XOO0725 2 None None None 58583154 Common minD septum site-determining protein XOO3531 131 COG2894 MinD, Septum formation inhibitor-activating ATPase Cell division and chromosome partitioning 58582741 Common tnpX1 IS1113 transposase XOO3118 87 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583932 Common - putative transposase XOO4309 3 None None None 58582285 Common - hypothetical protein XOO2662 4 COG4890 COG4890, Predicted outer membrane lipoprotein Function unknown 58582770 Common fixL sensor histidine kinase XOO3147 172 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 58583134 Pathogen - hypothetical protein XOO3511 2 None None None 58583610 Common ubiE ubiquinone/menaquinone biosynthesis methyltransferase XOO3987 217 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 58583874 Common - arabinogalactan endo-1,4-beta-galactosidase XOO4251 20 COG3867 COG3867, Arabinogalactan endo-1,4-beta-galactosidase Carbohydrate transport and metabolism 58581254 Common cyoC cytochrome O ubiquinol oxidase subunit III XOO1631 158 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 58579813 Common - transcriptional regulator lacI family XOO0190 126 COG1609 PurR, Transcriptional regulators Transcription 58583054 Common - IS1478 transposase XOO3431 26 None None None 58581809 Common galU UTP-glucose-1-phosphate uridylyltransferase XOO2186 233 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 122879272 Common - hypothetical protein XOO3551 5 None None None 58584076 Common - hypothetical protein XOO4453 3 None None None 58583117 Common - hypothetical protein XOO3494 46 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 58584056 Common xsa xylosidase; arabinosidase XOO4433 19 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 58580691 Common slp outer membrane protein Slp XOO1068 30 COG3065 Slp, Starvation-inducible outer membrane lipoprotein Cell envelope biogenesis, outer membrane 58581603 Common fasD outer membrane usher protein FasD XOO1980 39 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 58581589 Common fabZ (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase XOO1966 187 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 58581680 Common fumC fumarate hydratase XOO2057 236 COG0114 FumC, Fumarase Energy production and conversion 58581933 Common sdhC succinate dehydrogenase membrane anchor subunit XOO2310 61 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 58581661 Common oxyR hydrogen peroxide-inducible genes activator XOO2038 136 COG0583 LysR, Transcriptional regulator Transcription 58583687 Common ndhF putative monovalent cation/H+ antiporter subunit A XOO4064 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 58582163 Common crcB hypothetical protein XOO2540 82 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 58581461 Common bga beta-galactosidase XOO1838 28 COG3867 COG3867, Arabinogalactan endo-1,4-beta-galactosidase Carbohydrate transport and metabolism 122879072 Common rpiA ribose-5-phosphate isomerase A XOO1127 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 58582820 Common - putative transposase XOO3197 31 None None None 58582507 Common recJ single-stranded-DNA-specific exonuclease XOO2884 192 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 122879358 Common uppP undecaprenyl pyrophosphate phosphatase XOO4489 200 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 58580420 Common xanA phosphoglucomutase; phosphomannomutase XOO0797 242 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 58582686 Common - IS1404 transposase XOO3063 69 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583351 Common fadB p-hydroxycinnamoyl CoA hydratase/lyase XOO3728 181 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 58579694 Common - putative transposase XOO0071 26 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58579991 Common - putative ISXo8 transposase XOO0368 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 122879149 Common dnaE DNA polymerase III subunit alpha XOO1962 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 58583617 Common xerC site-specific tyrosine recombinase XerC XOO3994 228 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 58583741 Common - putative transposase XOO4118 36 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580167 Common - hypothetical protein XOO0544 14 None None None 58582145 Common - hypothetical protein XOO2522 26 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58584109 Common amtB ammonium transporter XOO4486 201 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 58581716 Common metX homoserine O-acetyltransferase XOO2093 130 COG2021 MET2, Homoserine acetyltransferase Amino acid transport and metabolism 122879365 Common gidB glucose-inhibited division protein B XOO4556 168 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 58581371 Common pilI pilus biogenesis protein XOO1748 60 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 58582526 Common mvaB hydroxymethylglutaryl-CoA lyase XOO2903 130 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 58583563 Pathogen - hypothetical protein XOO3940 1 None None None 58581390 Pathogen - hypothetical protein XOO1767 1 None None None 122879250 Common - hypothetical protein XOO3279 234 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 58580044 Common - tRNA-dihydrouridine synthase A XOO0421 204 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 122879264 Common - hypothetical protein XOO3484 49 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 58582112 Common - hypothetical protein XOO2489 3 None None None 58582804 Common ihfA integration host factor subunit alpha XOO3181 210 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 58581668 Common - hypothetical protein XOO2045 14 COG2153 ElaA, Predicted acyltransferase General function prediction only 58583641 Common ybaR sulfate permease XOO4018 162 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 161898996 Common ldp dihydrolipoamide dehydrogenase XOO2042 240 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 58580052 Common baf pantothenate kinase XOO0429 53 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 58580738 Common - sensor histidine kinase XOO1115 220 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 58579720 Pathogen - hypothetical protein XOO0097 2 None None None 58581724 Pathogen - putative ISXo8 transposase XOO2101 1 None None None 58581731 Common - putative transposase XOO2108 41 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58584037 Common - hypothetical protein XOO4414 139 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 58582905 Common - integral membrane protein XOO3282 120 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 122879306 Common - sugar kinase XOO3971 105 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 58583274 Common - transposase XOO3651 6 None None None 58580195 Common norM multidrug efflux protein XOO0572 165 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 58582272 Common - putative ISXo8 transposase XOO2649 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582600 Common exoD ExoD protein XOO2977 18 COG3932 COG3932, Uncharacterized ABC-type transport system, permease components General function prediction only 58584196 Common - hypothetical protein XOO4573 157 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 58584233 Pathogen - hypothetical protein XOO4610 1 COG3668 ParE, Plasmid stabilization system protein General function prediction only 58581959 Common fumB fumarate hydratase XOO2336 148 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 58579681 Pathogen bpH1 histone H1 homolog XOO0058 1 None None None 58583455 Common ftsL cell division protein XOO3832 25 COG3116 FtsL, Cell division protein Cell division and chromosome partitioning 58579999 Common - transposase XOO0376 52 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579645 Common lldD L-lactate dehydrogenase XOO0022 121 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 58580603 Common - IS1478 transposase XOO0980 23 None None None 161899014 Common fabH 3-oxoacyl-(acyl carrier protein) synthase III XOO0878 218 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 122879085 Common - hypothetical protein XOO1336 70 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 58584091 Common - hypothetical protein XOO4468 66 COG3549 HigB, Plasmid maintenance system killer protein General function prediction only 58580982 Common fecA citrate-dependent iron transporter XOO1359 112 COG4772 FecA, Outer membrane receptor for Fe3+-dicitrate Inorganic ion transport and metabolism 58582846 Common nuoM NADH dehydrogenase subunit M XOO3223 210 COG1008 NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) Energy production and conversion 161898986 Common flgF flagellar basal body rod protein FlgF XOO2574 123 COG4787 FlgF, Flagellar basal body rod protein Cell motility and secretion 58583247 Common ilvE branched-chain amino acid aminotransferase XOO3624 210 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 58582801 Common gumC GumC XOO3178 93 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 58583829 Common - tRNA/rRNA methyltransferase XOO4206 167 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 58582227 Common fliI flagellar protein XOO2604 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 58581704 Common - putative transposase XOO2081 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583845 Common - possible transposase XOO4222 18 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 121632083 Pathogen - hypothetical protein XOO4780 2 None None None 58584154 Common - pseudouridylate synthase XOO4531 195 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 58581749 Pathogen - integrase XOO2126 1 None None None 122879068 Common nodB acetylxylan esterase XOO1091 103 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 58581416 Common - hypothetical protein XOO1793 33 COG1585 COG1585, Membrane protein implicated in regulation of membrane protease activity Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 58580213 Common - lipopolysaccharide core biosynthesis glycosyl transferase XOO0590 121 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 58583378 Common - glycine rich protein XOO3755 86 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 58580775 Common - inosine-uridine preferring nucleoside hydrolase XOO1152 86 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 58581778 Common ccmA heme ABC transporter ATP-binding protein XOO2155 249 COG4133 CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component Posttranslational modification, protein turnover, chaperones 58582594 Common - putative transposase XOO2971 41 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583866 Pathogen - hypothetical protein XOO4243 1 None None None 58580017 Common iroN TonB-dependent receptor XOO0394 38 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 58580312 Pathogen - hypothetical protein XOO0689 1 None None None 58583652 Common - hypothetical protein XOO4029 40 COG1801 COG1801, Uncharacterized conserved protein Function unknown 121632136 Pathogen - hypothetical protein XOO4931 1 None None None 58582812 Common - IS1404 transposase XOO3189 7 None None None 122879251 Common rng ribonuclease G XOO3315 184 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 122879267 Common - hypothetical protein XOO3518 17 None None None 121632131 Pathogen - hypothetical protein XOO4922 1 None None None 58583145 Common - hypothetical protein XOO3522 17 COG4877 COG4877, Uncharacterized protein conserved in bacteria Function unknown 58583824 Common - two-component system sensor protein XOO4201 209 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 122879191 Common - putative transposase XOO2470 46 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583633 Common - carboxylesterase XOO4010 93 COG0400 COG0400, Predicted esterase General function prediction only 58584051 Common - secreted xylanase XOO4428 31 COG3693 XynA, Beta-1,4-xylanase Carbohydrate transport and metabolism 122879331 Common spoIIAA anti-sigma F factor antagonist XOO4264 15 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 58582607 Common - hypothetical protein XOO2984 2 None None None 58581048 Common algH hypothetical protein XOO1425 129 COG1678 COG1678, Putative transcriptional regulator Transcription 58583919 Common rpoH RNA polymerase factor sigma-32 XOO4296 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 58580858 Common - Transposase and inactivated derivatives XOO1235 133 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582423 Common - transposase XOO2800 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58580872 Common - hypothetical protein XOO1249 9 None None None 58580073 Common - leucine aminopeptidase XOO0450 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 58579760 Common pdhB dihydrolipoamide acyltransferase XOO0137 19 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 58583680 Common - putative transposase XOO4057 41 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58584190 Common cls cardiolipin synthase XOO4567 153 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 58580518 Pathogen - hypothetical protein XOO0895 1 None None None 58580455 Common holC DNA polymerase III subunit chi XOO0832 59 COG2927 HolC, DNA polymerase III, chi subunit DNA replication, recombination, and repair 58581392 Common bga beta-galactosidase XOO1769 24 COG1874 LacA, Beta-galactosidase Carbohydrate transport and metabolism 58580076 Common ubiA 4-hydroxybenzoate octaprenyltransferase XOO0453 157 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 58582131 Common coaD phosphopantetheine adenylyltransferase XOO2508 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 122879210 Common - hypothetical protein XOO2766 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 58580751 Common - hypothetical protein XOO1128 94 COG2947 COG2947, Uncharacterized conserved protein Function unknown 58581864 Common tspO tryptophan-rich sensory protein XOO2241 53 COG3476 COG3476, Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) Signal transduction mechanisms 58582965 Pathogen - hypothetical protein XOO3342 1 None None None 58580839 Pathogen - hypothetical protein XOO1216 2 None None None 58582907 Common - IS1595 transposase XOO3284 28 None None None 58583227 Common ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase XOO3604 190 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 58580874 Common - hypothetical protein XOO1251 14 COG5463 COG5463, Predicted integral membrane protein Function unknown 58582900 Pathogen - hypothetical protein XOO3277 1 None None None 58583813 Common acrA acriflavin resistance protein XOO4190 182 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 58580830 Common colS two-component system sensor protein XOO1207 212 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58580060 Common trpS tryptophanyl-tRNA synthetase XOO0437 223 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 58581317 Common - phage-related tail protein XOO1694 31 COG3498 COG3498, Phage tail tube protein FII General function prediction only 58581957 Common - phospholipase XOO2334 52 COG2829 PldA, Outer membrane phospholipase A Cell envelope biogenesis, outer membrane 58583541 Common - transcriptional regulator lacI family XOO3918 127 COG1609 PurR, Transcriptional regulators Transcription 58580567 Pathogen ilvM acetolactate synthase isozyme II small subunit XOO0944 2 COG3978 COG3978, Acetolactate synthase (isozyme II), small (regulatory) subunit Function unknown 58580655 Common tig trigger factor XOO1032 210 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 58583788 Common - IS1404 transposase XOO4165 120 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583258 Common - putative transposase XOO3635 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 121632100 Common - hypothetical protein XOO4807 15 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 58580165 Common - hypothetical protein XOO0542 16 COG2267 PldB, Lysophospholipase Lipid metabolism 58581229 Common - hypothetical protein XOO1606 18 None None None 58579643 Common - IS1479 transposase XOO0020 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58579823 Common - transposase XOO0200 30 None None None 58582127 Common - putative transposase XOO2504 39 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58584107 Common ntrB two-component system sensor protein XOO4484 202 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 58580851 Common hisC histidinol-phosphate aminotransferase XOO1228 8 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 122879295 Common - hypothetical protein XOO3858 176 COG1327 COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Transcription 58582553 Common - hypothetical protein XOO2930 6 None None None 58580223 Common - hypothetical protein XOO0600 20 None None None 122879048 Common - hypothetical protein XOO0800 37 COG3754 RgpF, Lipopolysaccharide biosynthesis protein Cell envelope biogenesis, outer membrane 58582007 Common - IS1595 transposase XOO2384 2 None None None 121632093 Common tnpA transposase XOO4795 26 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58583713 Common - putative transposase XOO4090 38 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583797 Pathogen - putative ISXo8 transposase XOO4174 1 None None None 58584098 Common - hemagglutinin XOO4475 42 COG4934 COG4934, Predicted protease Posttranslational modification, protein turnover, chaperones 58580319 Pathogen - hypothetical protein XOO0696 1 None None None 58583468 Common kdpB potassium-transporting ATPase subunit B XOO3845 232 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism 58580601 Common cirA colicin I receptor XOO0978 58 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58582087 Common pstA ABC transporter phosphate permease XOO2464 220 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 58581163 Common - hypothetical protein XOO1540 2 COG3904 COG3904, Predicted periplasmic protein Function unknown 122879139 Common - transcriptional regulator XOO1841 49 COG3800 COG3800, Predicted transcriptional regulator General function prediction only 58583170 Common gcvP glycine dehydrogenase XOO3547 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 58583948 Common - dipeptidyl peptidase XOO4325 121 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 58580236 Pathogen - hypothetical protein XOO0613 1 None None None 58580637 Common - hypothetical protein XOO1014 29 COG3773 SleB, Cell wall hydrolyses involved in spore germination Cell envelope biogenesis, outer membrane 58579625 Common dnaN DNA polymerase III subunit beta XOO0002 214 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 122879291 Common sahH S-adenosyl-L-homocysteine hydrolase XOO3798 177 COG0499 SAM1, S-adenosylhomocysteine hydrolase Coenzyme metabolism 58582810 Common thrS threonyl-tRNA synthetase XOO3187 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 58582291 Common - hypothetical protein XOO2668 14 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 58582314 Common - putative ISXo8 transposase XOO2691 33 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580792 Pathogen - hypothetical protein XOO1169 1 None None None 58582977 Common - transposase XOO3354 4 None None None 58582407 Common guaA glutamine amidotransferase XOO2784 111 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 58583868 Common - hypothetical protein XOO4245 3 None None None 58583177 Common - possible transposase XOO3554 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581430 Common - heat shock protein XOO1807 128 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 122879196 Common moeB molybdopterin biosynthesis protein MoeB XOO2514 224 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 58583040 Common - hypothetical protein XOO3417 22 COG5373 COG5373, Predicted membrane protein Function unknown 58579803 Common tnpA transposase XOO0180 31 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58581491 Common hpt hypoxanthine-guanine phosphoribosyltransferase XOO1868 126 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 58580086 Common fabF 3-oxoacyl-(acyl carrier protein) synthase I XOO0463 209 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 58582817 Common fimT fimbrial biogenesis protein XOO3194 20 COG4970 FimT, Tfp pilus assembly protein FimT Cell motility and secretion / Intracellular trafficking and secretion 58580443 Common slt soluble lytic murein transglycosylase XOO0820 168 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 58581109 Common - putative transposase XOO1486 27 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581410 Common bioA adenosylmethionine--8-amino-7-oxononanoate transaminase XOO1787 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 58580825 Common ompW outer membrane protein W XOO1202 9 COG3047 OmpW, Outer membrane protein W Cell envelope biogenesis, outer membrane 58581572 Common - transposase XOO1949 6 None None None 58583665 Common - hypothetical protein XOO4042 18 None None None 58580669 Common - Site-specific DNA methylase XOO1046 19 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 58583389 Common - oxidoreductase XOO3766 86 COG3127 COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Secondary metabolites biosynthesis, transport, and catabolism 58583771 Pathogen - transposase XOO4148 1 None None None 58582636 Common pthA2 avirulence protein XOO3013 10 None None None 58583692 Common - putative monovalent cation/H+ antiporter subunit G XOO4069 77 COG1320 MnhG, Multisubunit Na+/H+ antiporter, MnhG subunit Inorganic ion transport and metabolism 58582750 Common - hypothetical protein XOO3127 5 None None None 58582241 Common flhA flagellar biosynthesis protein A XOO2618 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 122879096 Common hrpXct HrpX protein XOO1380 35 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 122879360 Common iorA indolepyruvate ferredoxin oxidoreductase XOO4505 93 COG4231 COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Energy production and conversion 58580542 Common - IS1478 transposase XOO0919 23 None None None 58582580 Common - hypothetical protein XOO2957 86 COG2840 COG2840, Uncharacterized protein conserved in bacteria Function unknown 58583061 Pathogen - prolyl oligopeptidase family protein XOO3438 1 None None None 58580474 Pathogen xpsI general secretion pathway protein I XOO0851 2 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 58582226 Common fliH flagellar protein XOO2603 14 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 58582950 Common holA DNA polymerase III subunit delta XOO3327 86 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 58580584 Common - putative ISXo8 transposase XOO0961 10 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580718 Common - ribosome-associated GTPase XOO1095 163 COG1162 COG1162, Predicted GTPases General function prediction only 58582319 Common - pectinesterase XOO2696 20 COG4677 PemB, Pectin methylesterase Carbohydrate transport and metabolism 58581949 Common - possible transposase XOO2326 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579708 Common hrcU type III secretion system protein XOO0085 130 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 58582431 Common - FOG: Transposase XOO2808 15 None None None 58579628 Common - hypothetical protein XOO0005 9 COG1266 COG1266, Predicted metal-dependent membrane protease General function prediction only 58579879 Common - nuclear receptor binding factor related protein XOO0256 11 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 121632017 Pathogen - hypothetical protein XOO4702 1 None None None 58581709 Common - putative ISXo8 transposase XOO2086 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580498 Common - transposase XOO0875 6 None None None 58582459 Common cheA chemotaxis protein XOO2836 149 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 58583286 Common - hypothetical protein XOO3663 28 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 58579789 Common - ATP-dependent RNA helicase XOO0166 200 COG1205 COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster General function prediction only 58582891 Common - hypothetical protein XOO3268 35 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58579741 Common - hypothetical protein XOO0118 45 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 58579906 Common egl cellulase XOO0283 10 COG2730 BglC, Endoglucanase Carbohydrate transport and metabolism 122879118 Common cyoA cytochrome O ubiquinol oxidase subunit II XOO1629 132 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 58583707 Common yfcY acetyl-CoA acetyltransferase XOO4084 168 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 58583131 Common - hypothetical protein XOO3508 12 None None None 58579667 Pathogen - hypothetical protein XOO0044 1 None None None 58582392 Common - hypothetical protein XOO2769 146 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 58582970 Common - possible transposase XOO3347 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582795 Common gumI GumI XOO3172 9 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 58583727 Common - putative transposase XOO4104 44 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583067 Common doc death-on-curing protein XOO3444 52 COG3654 Doc, Prophage maintenance system killer protein General function prediction only 58581647 Common - hypothetical protein XOO2024 93 COG2867 COG2867, Oligoketide cyclase/lipid transport protein Lipid metabolism 58583808 Common queF 7-cyano-7-deazaguanine reductase XOO4185 120 COG2904 COG2904, Uncharacterized protein conserved in bacteria Function unknown 58581102 Common - putative transposase XOO1479 14 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580701 Common rhgB rhamnogalacturonase B XOO1078 3 None None None 58582091 Common rnt ribonuclease T XOO2468 66 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 58583836 Common dhaA haloalkane dehalogenase XOO4213 109 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 58581192 Common - possible transposase XOO1569 19 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580648 Common - hypothetical protein XOO1025 28 COG4760 COG4760, Predicted membrane protein Function unknown 58580950 Common trmD tRNA (guanine-N(1)-)-methyltransferase XOO1327 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 58583659 Common - cellulase XOO4036 21 COG4305 COG4305, Endoglucanase C-terminal domain/subunit and related proteins Carbohydrate transport and metabolism 58581137 Common - hypothetical protein XOO1514 237 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 58581085 Common - metallopeptidase XOO1462 63 COG3590 PepO, Predicted metalloendopeptidase Posttranslational modification, protein turnover, chaperones 58580941 Common galM aldose 1-epimerase XOO1318 99 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 161898957 Common hrmI glucuronate isomerase XOO4427 59 COG1904 UxaC, Glucuronate isomerase Carbohydrate transport and metabolism 58582365 Common rnD ribonuclease D XOO2742 118 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 58580297 Common - putative transposase XOO0674 41 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580362 Common - transposase XOO0739 32 None None None 58583629 Common - hypothetical protein XOO4006 30 COG3137 COG3137, Putative salt-induced outer membrane protein Cell envelope biogenesis, outer membrane 58581692 Common - transcriptional regulator XOO2069 127 COG1609 PurR, Transcriptional regulators Transcription 58583787 Common - hypothetical protein XOO4164 21 None None None 58580260 Common - putative transposase XOO0637 44 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879005 Common egl cellulase XOO0282 14 COG2730 BglC, Endoglucanase Carbohydrate transport and metabolism 58581079 Common - hypothetical protein XOO1456 18 None None None 58582848 Common nuoK NADH dehydrogenase subunit K XOO3225 140 COG0713 NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) Energy production and conversion 58580359 Common glmU UDP-N-acetylglucosamine pyrophosphorylase XOO0736 230 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 122879061 Common dhs1 family II 2-keto-3-deoxy-D-arabino-heptulosonate 7-phosphate synthase XOO0977 73 COG3200 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 58584063 Common - transposase XOO4440 31 None None None 58582189 Common flgM flagellar protein XOO2566 10 None None None 58581619 Common parC DNA topoisomerase IV subunit A XOO1996 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 58582450 Common - Outer membrane receptor proteins, mostly Fe transport XOO2827 110 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58581337 Common - phage-related terminase XOO1714 27 COG5484 COG5484, Uncharacterized conserved protein Function unknown 58583191 Common rplF 50S ribosomal protein L6 XOO3568 234 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 58579865 Common rep ATP-dependent DNA helicase XOO0242 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 58580526 Common - hypothetical protein XOO0903 8 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 122879296 Common - putative ISXo8 transposase XOO3874 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582280 Common - transposase XOO2657 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58581886 Common - hypothetical protein XOO2263 4 None None None 58582497 Common rpfD regulatory protein XOO2874 24 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 58581697 Common metH 5-methyltetrahydrofolate-homocysteine methyl transferase XOO2074 164 COG0646 MetH, Methionine synthase I (cobalamin-dependent), methyltransferase domain Amino acid transport and metabolism 58584245 Common - dipeptidase XOO4622 101 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 58580964 Common - IS1404 transposase XOO1341 62 None None None 58582396 Common corA magnesium and cobalt transport protein XOO2773 168 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 121632084 Common - putative transposase XOO4782 3 None None None 58582333 Common - tRNA/rRNA methyltransferase XOO2710 158 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 58583006 Common - possible transposase XOO3383 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583487 Pathogen - hypothetical protein XOO3864 1 None None None 58582138 Common - Transposase and inactivated derivatives XOO2515 9 None None None 58583884 Pathogen - hypothetical protein XOO4261 1 None None None 58581325 Common - phage-related tail protein XOO1702 15 None None None 58581851 Common regS two-component system sensor protein XOO2228 107 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58583335 Common gst glutathione S-transferase XOO3712 62 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 58584171 Common actP acetate permease XOO4548 162 COG4147 DhlC, Predicted symporter General function prediction only 122879105 Pathogen - hypothetical protein XOO1457 2 None None None 58582727 Common - AraC-type DNA-binding domain-containing proteins XOO3104 4 None None None 58580992 Common ampR transcriptional activator ampR family XOO1369 165 COG0583 LysR, Transcriptional regulator Transcription 58579746 Common - Rhs family protein XOO0123 45 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 58580917 Common purN phosphoribosylglycinamide formyltransferase XOO1294 221 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 58583894 Common - proteinase XOO4271 16 COG4934 COG4934, Predicted protease Posttranslational modification, protein turnover, chaperones 58580206 Common smf DNA processing chain A XOO0583 209 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 58581880 Common hisC histidinol-phosphate aminotransferase XOO2257 223 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 122879134 Common cysQ sulfite synthesis pathway protein XOO1788 189 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 58582461 Common tsr chemotaxis protein XOO2838 123 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 122879340 Common - acyltransferase XOO4316 43 COG4261 COG4261, Predicted acyltransferase General function prediction only 58582490 Pathogen - hypothetical protein XOO2867 1 None None None 122878980 Common htrA protease DO XOO0059 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 58583151 Common - two-component system sensor protein XOO3528 139 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 122879286 Common - hypothetical protein XOO3721 45 COG2933 COG2933, Predicted SAM-dependent methyltransferase General function prediction only 58581034 Pathogen - hypothetical protein XOO1411 1 None None None 58581798 Common pat phosphinothricin N-acetyltransferase XOO2175 119 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 58583472 Common - hypothetical protein XOO3849 9 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 58583611 Common - response regulator XOO3988 174 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 58582470 Common tsr chemotaxis protein XOO2847 155 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 58583265 Common pip proline imino-peptidase, chain A XOO3642 124 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 58580352 Common atpH F0F1 ATP synthase subunit delta XOO0729 179 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 58582064 Common - ABC transporter ATP-binding protein XOO2441 247 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 58581825 Common - hypothetical protein XOO2202 148 COG0583 LysR, Transcriptional regulator Transcription 58581610 Pathogen - hypothetical protein XOO1987 1 None None None 122879323 Common - ubiquinone biosynthesis protein XOO4154 39 COG2941 CAT5, Ubiquinone biosynthesis protein COQ7 Coenzyme metabolism 58582384 Common petB ubiquinol cytochrome C oxidoreductase, cytochrome B subunit XOO2761 149 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 122878989 Common gltD glutamate synthase subunit beta XOO0178 213 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 58582869 Common - phosphodiesterase XOO3246 169 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 58580767 Common - hypothetical protein XOO1144 137 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 58582612 Common - methyltransferase XOO2989 66 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 121632034 Common - IS1404 transposase XOO4723 62 None None None 58580123 Common - hypothetical protein XOO0500 15 COG3952 COG3952, Predicted membrane protein Function unknown 58581312 Common - phage-related tail protein XOO1689 36 COG3500 COG3500, Phage protein D General function prediction only 58582985 Common - putative transposase XOO3362 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581504 Common atoB acetoacetyl-CoA thiolase XOO1881 172 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 58583492 Common - hypothetical protein XOO3869 4 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 58581156 Pathogen - hypothetical protein XOO1533 2 None None None 58580535 Common hflK integral membrane protease subunit XOO0912 219 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 58581093 Common cheA chemotaxis histidine protein kinase XOO1470 150 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 58582592 Common parE DNA topoisomerase IV subunit B XOO2969 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 122878998 Common - hypothetical protein XOO0224 4 None None None 122879337 Pathogen - hypothetical protein XOO4287 2 None None None 122879145 Common rpoE RNA polymerase sigma factor XOO1919 147 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 58580032 Common - hypothetical protein XOO0409 15 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 58581474 Common mucD periplasmic protease XOO1851 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 58583126 Common - VGR-related protein XOO3503 60 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 58580660 Common ppiD peptidyl-prolyl cis-trans isomerase XOO1037 162 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 161898972 Common nuoH NADH dehydrogenase subunit H XOO3228 187 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 58581929 Common - hypothetical protein XOO2306 34 COG2938 COG2938, Uncharacterized conserved protein Function unknown 121632058 Pathogen - hypothetical protein XOO4749 2 None None None 58582182 Pathogen - hypothetical protein XOO2559 1 None None None 58579846 Common - hypothetical protein XOO0223 6 None None None 58581903 Common - Transposase and inactivated derivatives XOO2280 133 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582000 Common czcA cation efflux system protein XOO2377 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 58581358 Common pqqG pyrroloquinoline quinone biosynthesis protein PqqB XOO1735 44 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 58582860 Pathogen secG preprotein translocase subunit SecG XOO3237 2 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 58583589 Common - hypothetical protein XOO3966 28 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 58582764 Common - hypothetical protein XOO3141 48 COG3938 COG3938, Proline racemase Amino acid transport and metabolism 58580027 Common - hypothetical protein XOO0404 35 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 58584239 Common - IS1478 transposase XOO4616 18 None None None 58581908 Common - transposase XOO2285 32 None None None 58581978 Common sglT sodium/glucose cotransport protein XOO2355 157 COG4146 COG4146, Predicted symporter General function prediction only 122879332 Common - hypothetical protein XOO4267 58 COG0778 NfnB, Nitroreductase Energy production and conversion 58581917 Common - low molecular weight phosphotyrosine protein phosphatase XOO2294 137 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 58582576 Common nlpD lipoprotein XOO2953 175 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 58580189 Common - hypothetical protein XOO0566 26 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 58584226 Common - hypothetical protein XOO4603 15 COG1289 COG1289, Predicted membrane protein Function unknown 122879229 Common - regucalcin XOO2918 68 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 58581150 Common - OmpA family protein XOO1527 166 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 58579881 Common - hypothetical protein XOO0258 19 COG5481 COG5481, Uncharacterized conserved small protein containing a coiled-coil domain Function unknown 58581487 Common frnE polyketide synthase XOO1864 85 COG2761 FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 122879041 Common - hypothetical protein XOO0719 2 None None None 58582326 Common - N-ethylammeline chlorohydrolase XOO2703 172 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 58580641 Common glpQ glycerophosphodiester phosphodiesterase XOO1018 130 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 122879222 Common cheD chemotaxis protein XOO2858 87 COG1871 CheD, Chemotaxis protein; stimulates methylation of MCP proteins Cell motility and secretion / Signal transduction mechanisms 58581060 Common - hypothetical protein XOO1437 85 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 58582237 Common - GGDEF family protein XOO2614 170 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 58580999 Common - hypothetical protein XOO1376 3 COG3152 COG3152, Predicted membrane protein Function unknown 58581858 Common - integral membrane protein XOO2235 94 COG2510 COG2510, Predicted membrane protein Function unknown 58581522 Pathogen - hypothetical protein XOO1899 1 None None None 58579753 Common - hypothetical protein XOO0130 31 COG4529 COG4529, Uncharacterized protein conserved in bacteria Function unknown 121632033 Pathogen - hypothetical protein XOO4721 1 None None None 122879300 Common iroN TonB-dependent receptor XOO3924 40 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58581207 Common pilD type IV pre-pilin leader peptidase XOO1584 145 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 58582380 Common - hypothetical protein XOO2757 3 None None None 58579627 Common gyrB DNA gyrase subunit B XOO0004 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 58584223 Common folE GTP cyclohydrolase I XOO4600 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 58581367 Common tonB TonB protein XOO1744 34 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 58583373 Common apaH diadenosine tetraphosphatase XOO3750 82 COG0639 ApaH, Diadenosine tetraphosphatase and related serine/threonine protein phosphatases Signal transduction mechanisms 58580095 Common - hypothetical protein XOO0472 148 COG1042 COG1042, Acyl-CoA synthetase (NDP forming) Energy production and conversion 58579875 Common - transcriptional regulator lacI family XOO0252 129 COG1609 PurR, Transcriptional regulators Transcription 58580234 Pathogen - hypothetical protein XOO0611 1 None None None 58582187 Common - histidine kinase XOO2564 220 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 58581998 Common - serine protease XOO2375 104 COG4625 COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain Function unknown 161898960 Common groES co-chaperonin GroES XOO4289 215 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 58581108 Common - putative transposase XOO1485 2 None None None 58581480 Common recO DNA repair protein RecO XOO1857 66 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 121632036 Pathogen - hypothetical protein XOO4725 1 None None None 122879147 Common - hypothetical protein XOO1933 74 COG2928 COG2928, Uncharacterized conserved protein Function unknown 58580350 Common atpE F0F1 ATP synthase subunit C XOO0727 63 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 122879159 Common serA D-3-phosphoglycerate dehydrogenase XOO2143 230 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 58583575 Common lipA lipoyl synthase XOO3952 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 58580695 Common - hypothetical protein XOO1072 36 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 58583281 Common - hypothetical protein XOO3658 18 COG4875 COG4875, Uncharacterized protein conserved in bacteria with a cystatin-like fold Function unknown 58584133 Common - hypothetical protein XOO4510 62 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 58579890 Common phhA phenylalanine 4-monooxygenase XOO0267 45 COG3186 COG3186, Phenylalanine-4-hydroxylase Amino acid transport and metabolism 122879304 Common - hypothetical protein XOO3955 7 COG1462 CsgG, Uncharacterized protein involved in formation of curli polymers Cell envelope biogenesis, outer membrane 58581683 Common - hypothetical protein XOO2060 8 COG3595 COG3595, Uncharacterized conserved protein Function unknown 58582893 Common - integral membrane protein XOO3270 3 None None None 58581916 Common - hypothetical protein XOO2293 48 None None None 58583535 Common hmsF HmsF XOO3912 84 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 58581155 Pathogen phuR outer membrane hemin receptor XOO1532 2 None None None 58580961 Common - hypothetical protein XOO1338 14 None None None 58580516 Common prpC methylcitrate synthase XOO0893 194 COG0372 GltA, Citrate synthase Energy production and conversion 58581091 Common cheW chemotaxis protein XOO1468 123 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 58579749 Common - putative transposase XOO0126 42 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879342 Common - acyl carrier protein XOO4320 44 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 122879123 Common - acetyltransferase XOO1657 53 COG0456 RimI, Acetyltransferases General function prediction only 58581314 Common - phage-related tail protein XOO1691 48 COG5283 COG5283, Phage-related tail protein Function unknown 122879178 Common - IS1478 transposase XOO2374 30 None None None 122879055 Common fecA TonB-dependent receptor XOO0901 29 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 58581770 Common cycH C-type cytochrome biogenesis protein XOO2147 41 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 58580521 Common - inosine-uridine preferring nucleoside hydrolase XOO0898 81 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 58582556 Common - hypothetical protein XOO2933 146 COG1741 COG1741, Pirin-related protein General function prediction only 122879253 Common - fumarylacetoacetate hydrolase XOO3380 179 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 58579964 Common - IS1478 transposase XOO0341 27 None None None 58583341 Common - putative transposase XOO3718 44 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580762 Common - hypothetical protein XOO1139 20 COG3933 COG3933, Transcriptional antiterminator Transcription 58579635 Common pdxJ pyridoxal phosphate biosynthetic protein PdxJ XOO0012 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 58581475 Common lepA GTP-binding protein LepA XOO1852 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 58582327 Common - hypothetical protein XOO2704 4 None None None 58582538 Pathogen - relaxation protein XOO2915 1 None None None 58580263 Pathogen - hypothetical protein XOO0640 1 None None None 122879325 Common - hypothetical protein XOO4182 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 122879184 Common hutG formylglutamate amidohydrolase XOO2399 56 COG3741 HutG, N-formylglutamate amidohydrolase Amino acid transport and metabolism 58580914 Pathogen - hypothetical protein XOO1291 2 None None None 58581808 Common - epimerase; dehydratase protein XOO2185 168 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 58580927 Common - hypothetical protein XOO1304 26 COG2261 COG2261, Predicted membrane protein Function unknown 58582742 Common btuB TonB-dependent receptor XOO3119 117 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 58583105 Common - hypothetical protein XOO3482 4 None None None 58583789 Common ampR B-lactamase regulatory protein XOO4166 4 None None None 58583257 Common - putative ISXo8 transposase XOO3634 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580180 Common - hypothetical protein XOO0557 29 None None None 58580548 Common htrB lipid A biosynthesis lauroyl acyltransferase XOO0925 106 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 58581526 Common - hypothetical protein XOO1903 9 COG1514 LigT, 2'-5' RNA ligase Translation, ribosomal structure and biogenesis 58581140 Common gcdH glutaryl-CoA dehydrogenase XOO1517 157 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 58580643 Common - putative ISXo8 transposase XOO1020 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582378 Common lhr1 ATP-dependent DNA helicase XOO2755 72 COG1201 Lhr, Lhr-like helicases General function prediction only 58582437 Common - putative transposase XOO2814 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 122879032 Common - XorII very-short-patch-repair endonuclease XOO0606 71 COG3727 Vsr, DNA G:T-mismatch repair endonuclease DNA replication, recombination, and repair 58580357 Common pheA chorismate mutase XOO0734 10 COG1605 PheA, Chorismate mutase Amino acid transport and metabolism 58580112 Common - hypothetical protein XOO0489 66 COG1718 RIO1, Serine/threonine protein kinase involved in cell cycle control Signal transduction mechanisms / Cell division and chromosome partitioning 58582360 Common xseA exodeoxyribonuclease VII large subunit XOO2737 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 58581210 Common - conserved hypothetical protein, putative integral membrane protein XOO1587 63 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 58582367 Pathogen xrvA virulence regulator XOO2744 2 COG2916 Hns, DNA-binding protein H-NS General function prediction only 58582382 Common sspA stringent starvation protein A XOO2759 90 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 58581355 Pathogen - hypothetical protein XOO1732 1 None None None 122879141 Common - putative ISXo8 transposase XOO1891 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582467 Common tsr chemotaxis protein XOO2844 160 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 58583474 Common nusB transcription antitermination protein NusB XOO3851 186 COG0781 NusB, Transcription termination factor Transcription 58583336 Common glnS glutaminyl-tRNA synthetase XOO3713 245 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 58582021 Common hutH histidine ammonia-lyase XOO2398 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 58581548 Common - hypothetical protein XOO1925 32 COG4731 COG4731, Uncharacterized protein conserved in bacteria Function unknown 58582458 Common cheY chemotaxis response regulator XOO2835 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58583331 Common - putative transposase XOO3708 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580883 Common fecA TonB-dependent receptor XOO1260 24 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 122879131 Common aspG asparaginase XOO1760 83 COG1446 COG1446, Asparaginase Amino acid transport and metabolism 58581101 Common - putative transposase XOO1478 19 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 121632056 Pathogen - hypothetical protein XOO4747 1 None None None 58582933 Common - putative ISXo8 transposase XOO3310 26 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582729 Common moeA molybdopterin biosynthesis XOO3106 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 58581854 Common proP Prop transport protein XOO2231 117 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58582477 Common - hypothetical protein XOO2854 3 None None None 58584236 Pathogen - site-specific DNA-methyltransferase XOO4613 1 None None None 58582543 Common dgoK 2-oxo-3-deoxygalactonate kinase XOO2920 41 COG3734 DgoK, 2-keto-3-deoxy-galactonokinase Carbohydrate transport and metabolism 58582403 Common rmrA transport protein XOO2780 135 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 58583419 Common ppc phosphoenolpyruvate carboxylase XOO3796 121 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 161898958 Common kdgT 2-keto-3-deoxygluconate permease XOO4332 27 None None None 58584168 Pathogen - hypothetical protein XOO4545 1 None None None 58582059 Common - putative transposase XOO2436 44 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579626 Common recF recombination protein F XOO0003 167 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 58581876 Common - putative transposase XOO2253 45 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581699 Common acdA acyl-CoA dehydrogenase XOO2076 168 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 58579754 Common virK VirK XOO0131 8 None None None 58583263 Common - hypothetical protein XOO3640 45 COG3931 COG3931, Predicted N-formylglutamate amidohydrolase Amino acid transport and metabolism 58584074 Common - putative ISXo8 transposase XOO4451 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583036 Common pykA pyruvate kinase XOO3413 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 58580834 Common tnp transposase XOO1211 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 122879320 Common - hypothetical protein XOO4098 26 None None None 58583628 Common - hypothetical protein XOO4005 75 COG2378 COG2378, Predicted transcriptional regulator Transcription 58580346 Pathogen - hypothetical protein XOO0723 1 None None None 121632095 Common - integral membrane protein XOO4797 25 COG1278 CspC, Cold shock proteins Transcription 58581768 Common - hypothetical protein XOO2145 8 None None None 122878985 Common malQ 4-alpha-glucanotransferase XOO0115 116 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 122879277 Pathogen - tryptophan repressor binding protein XOO3616 1 COG3308 COG3308, Predicted membrane protein Function unknown 58580360 Common styS histidine kinase-response regulator hybrid protein XOO0737 81 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58582128 Common ggt gamma-glutamyltranspeptidase XOO2505 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 58580475 Common xpsJ general secretion pathway protein J XOO0852 11 COG4795 PulJ, Type II secretory pathway, component PulJ Intracellular trafficking and secretion 58581099 Common - putative transposase XOO1476 44 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582626 Common rpoE RNA polymerase sigma-E factor XOO3003 155 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 58580968 Common btuB outer membrane receptor for transport of vitamin B XOO1345 130 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 58582301 Common cysS cysteinyl-tRNA synthetase XOO2678 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 58583780 Common speD S-adenosylmethionine decarboxylase XOO4157 32 COG1586 SpeD, S-adenosylmethionine decarboxylase Amino acid transport and metabolism 58582633 Common dsbE C-type cytochrome biogenesis protein/thioredoxin XOO3010 124 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 58581694 Common scrK fructokinase XOO2071 129 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 58583269 Common ahpF alkyl hydroperoxide reductase subunit F XOO3646 248 COG3634 AhpF, Alkyl hydroperoxide reductase, large subunit Posttranslational modification, protein turnover, chaperones 58581780 Common - hydrolase XOO2157 157 COG0388 COG0388, Predicted amidohydrolase General function prediction only 122879100 Common - putative ISXo8 transposase XOO1415 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580048 Common - hypothetical protein XOO0425 47 COG5267 COG5267, Uncharacterized protein conserved in bacteria Function unknown 58581223 Common - hypothetical protein XOO1600 20 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 58582008 Common - IS1478 transposase XOO2385 20 None None None 58582371 Common - putative ISXo8 transposase XOO2748 10 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58581645 Common - serine peptidase XOO2022 7 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 58583272 Common talB transaldolase B XOO3649 189 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 58581136 Common moeB molybdopterin biosynthesis protein XOO1513 166 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 58579987 Common - IS1404 transposase XOO0364 3 None None None 58579740 Common glgX glycogen debranching enzyme XOO0117 151 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 121632014 Common - transposase XOO4699 15 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 121632112 Common - putative transposase XOO4876 3 None None None 58583989 Common - putative ISXo8 transposase XOO4366 32 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583663 Common - ISRSO5-transposase protein XOO4040 39 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582419 Common - hypothetical protein XOO2796 49 COG2733 COG2733, Predicted membrane protein Function unknown 58579664 Common atsE AtsE XOO0041 11 COG5622 COG5622, Protein required for attachment to host cells Cell motility and secretion 58579642 Pathogen - hypothetical protein XOO0019 1 None None None 58581427 Common - transcriptional regulator XOO1804 60 COG1309 AcrR, Transcriptional regulator Transcription 58580323 Common sndH L-sorbosone dehydrogenase XOO0700 61 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 58582826 Common - hypothetical protein XOO3203 41 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 122879152 Common dapD 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase XOO1985 138 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 58581195 Common - transposase XOO1572 52 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579703 Common hrcS HrcS XOO0080 7 COG4794 EscS, Type III secretory pathway, component EscS Intracellular trafficking and secretion 58581961 Common fpr ferredoxin-NADP reductase XOO2338 102 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 58581377 Common rimJ ribosomal protein alanine acetyltransferase XOO1754 88 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 58583095 Common - hypothetical protein XOO3472 5 None None None 58580749 Common - hypothetical protein XOO1126 86 COG1430 COG1430, Uncharacterized conserved protein Function unknown 58583496 Common gsh1 glutamate-cysteine ligase precursor XOO3873 49 COG3572 GshA, Gamma-glutamylcysteine synthetase Coenzyme metabolism 58584064 Common - transposase XOO4441 6 None None None 58581543 Pathogen - hypothetical protein XOO1920 1 None None None 58580596 Common typA GTP-binding elongation factor protein XOO0973 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 58580247 Common - hypothetical protein XOO0624 10 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 122879137 Common sdaA L-serine dehydratase XOO1821 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 58580124 Common dpm1 dolichol-phosphate mannosyltransferase XOO0501 202 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 58581273 Common - IS1404 transposase XOO1650 57 None None None 58582984 Common - putative transposase XOO3361 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583367 Common - acetoin utilization family protein XOO3744 162 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 58581117 Common - IS1479 transposase XOO1494 20 None None None 58583551 Common - transposase XOO3928 38 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580104 Common pcaF beta-ketoadipyl CoA thiolase XOO0481 167 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 58582519 Pathogen - hypothetical protein XOO2896 1 COG5569 COG5569, Uncharacterized conserved protein Function unknown 58583398 Pathogen - hypothetical protein XOO3775 1 COG3720 HemS, Putative heme degradation protein Inorganic ion transport and metabolism 58581219 Common comL competence lipoprotein XOO1596 124 COG4105 ComL, DNA uptake lipoprotein General function prediction only 58580661 Common dniR murein hydrolase D XOO1038 91 COG1388 LytE, FOG: LysM repeat Cell envelope biogenesis, outer membrane 58580543 Common - hypothetical protein XOO0920 5 None None None 58582873 Common accD acetyl-CoA carboxylase subunit beta XOO3250 219 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 58580317 Common alr alanine racemase XOO0694 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 58581824 Common ybhD transcriptional regulator XOO2201 88 COG0583 LysR, Transcriptional regulator Transcription 58584009 Common - hypothetical protein XOO4386 8 None None None 58583722 Common - D-alanyl-D-alanine dipeptidase XOO4099 49 COG2173 DdpX, D-alanyl-D-alanine dipeptidase Cell envelope biogenesis, outer membrane 58580753 Common - hypothetical protein XOO1130 8 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 121632124 Common - IS1246, transposase YXOOp08 57 None None None 122879212 Pathogen - hypothetical protein XOO2768 1 None None None 122879025 Common - hypothetical protein XOO0522 13 None None None 122879292 Common - hypothetical protein XOO3808 6 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 58583386 Common colR two-component system regulatory protein XOO3763 212 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58580291 Common - hypothetical protein XOO0668 63 COG3384 COG3384, Uncharacterized conserved protein Function unknown 58580679 Common opsX saccharide biosynthesis regulatory protein XOO1056 92 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 58580799 Common tktA transketolase XOO1176 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 58582343 Common gstA glutathione S-transferase XOO2720 93 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 58582790 Common - hypothetical protein XOO3167 57 COG3542 COG3542, Uncharacterized conserved protein Function unknown 58582836 Common - hypothetical protein XOO3213 9 COG4322 COG4322, Uncharacterized protein conserved in bacteria Function unknown 58581067 Common - transposase XOO1444 32 None None None 58581245 Common obgE GTPase ObgE XOO1622 245 COG0536 Obg, Predicted GTPase General function prediction only 58581954 Common - hypothetical protein XOO2331 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 58581790 Common - transposase XOO2167 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 121632023 Pathogen - hypothetical protein XOO4708 1 None None None 58580493 Common - hypothetical protein XOO0870 29 None None None 122879077 Common - beta-lactamase XOO1196 189 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 58581936 Common ugpC sugar ABC transporter ATP-binding protein XOO2313 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 58584191 Pathogen - Lactoylglutathione lyase and related lyase XOO4568 2 None None None 58584143 Common - transposase XOO4520 30 None None None 58580609 Pathogen - hypothetical protein XOO0986 4 None None None 58579980 Common - Transposase and inactivated derivatives XOO0357 33 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583946 Common - 5'-nucleotidase, putative XOO4323 31 None None None 121632107 Pathogen - hypothetical protein XOO4827 1 None None None 58584095 Common - hypothetical protein XOO4472 33 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 58580574 Common - response regulator XOO0951 32 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 58582220 Common - hypothetical protein XOO2597 65 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 58580638 Common glpQ glycerophosphodiester phosphodiesterase XOO1015 3 None None None 58583311 Common cysW ABC transporter sulfate permease XOO3688 207 COG4208 CysW, ABC-type sulfate transport system, permease component Inorganic ion transport and metabolism 58580588 Common - hypothetical protein XOO0965 37 COG2802 COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease General function prediction only 58581161 Common ogt 6-O-methylguanine-DNA methyltransferase XOO1538 180 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 58582292 Common argH argininosuccinate lyase XOO2669 222 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 58584103 Common - putative transposase XOO4480 8 None None None 58580739 Common oprO polyphosphate-selective porin O XOO1116 24 COG3746 OprP, Phosphate-selective porin Inorganic ion transport and metabolism 58582414 Common yhjX integral membrane transporter XOO2791 75 None None None 58583738 Common yliI dehydrogenase XOO4115 120 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 58581616 Common acyII penicillin acylase II XOO1993 68 COG2366 COG2366, Protein related to penicillin acylase General function prediction only 122879161 Common cycW ABC transporter heme permease XOO2154 53 COG2386 CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 58582917 Pathogen - hypothetical protein XOO3294 1 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 58581534 Common - hypothetical protein XOO1911 145 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 58579651 Common kdgK 2-keto-3-deoxygluconate kinase XOO0028 58 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 58583804 Common - putative transposase XOO4181 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58582151 Common moeA molybdopterin biosynthesis XOO2528 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 122879364 Common phoD alkaline phosphatase D XOO4555 60 COG3540 PhoD, Phosphodiesterase/alkaline phosphatase D Inorganic ion transport and metabolism 58583025 Common - hypothetical protein XOO3402 54 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 121632064 Pathogen - hypothetical protein XOO4755 1 None None None 58583833 Common - hypothetical protein XOO4210 98 COG3177 COG3177, Uncharacterized conserved protein Function unknown 58583127 Common - hypothetical protein XOO3504 19 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 58581814 Common - IS1478 transposase XOO2191 29 None None None 58581971 Pathogen - hypothetical protein XOO2348 1 None None None 58581441 Common metB cystathionine gamma-synthase XOO1818 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 58580011 Common natA sodium ABC transporter ATP-binding protein XOO0388 249 COG4555 NatA, ABC-type Na+ transport system, ATPase component Energy production and conversion / Inorganic ion transport and metabolism 58582954 Pathogen - hypothetical protein XOO3331 2 None None None 58579949 Common - IS1404 transposase XOO0326 61 None None None 122879219 Common - hypothetical protein XOO2817 17 COG4253 COG4253, Uncharacterized protein conserved in bacteria Function unknown 122879351 Common xylA xylose isomerase XOO4417 68 COG2115 XylA, Xylose isomerase Carbohydrate transport and metabolism 58582799 Common gumE GumE XOO3176 5 None None None 58582547 Common gcvR glycine cleavage system transcriptional repressor XOO2924 28 COG2716 GcvR, Glycine cleavage system regulatory protein Amino acid transport and metabolism 122879259 Common oliA oligopeptide transporter XOO3435 41 COG1297 COG1297, Predicted membrane protein Function unknown 58579845 Common - probable vgr-related protein XOO0222 51 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 58583245 Pathogen - extracellular protease XOO3622 1 None None None 58580491 Common - RecB family exonuclease XOO0868 53 COG1468 COG1468, RecB family exonuclease DNA replication, recombination, and repair 122879198 Common - hypothetical protein XOO2543 5 COG5283 COG5283, Phage-related tail protein Function unknown 58581750 Common - hypothetical 125K protein XOO2127 9 None None None 58584113 Common - hypothetical protein XOO4490 6 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 58583795 Common - ISxac1 transposase XOO4172 12 None None None 58583768 Common putA bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase XOO4145 220 COG4230 COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase Energy production and conversion 58584043 Common - sialic acid-specific 9-O-acetylesterase XOO4420 15 None None None 122879089 Common cobS cobalamin synthase XOO1353 77 COG0368 CobS, Cobalamin-5-phosphate synthase Coenzyme metabolism 58581374 Common pilL PilL XOO1751 223 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 58582733 Common - putative ISXo8 transposase XOO3110 25 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58581604 Common ecpD pili assembly chaperone XOO1981 30 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 58582113 Common - hypothetical protein XOO2490 3 None None None 58581265 Common mutS DNA mismatch repair protein XOO1642 199 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 58583646 Common phS histidine kinase-response regulator hybrid protein XOO4023 80 None None None 58581412 Common nudE ADP-ribose diphosphatase NudE XOO1789 119 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 122879094 Common bfeA ferric enterobactin receptor XOO1364 111 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 58584079 Common ohr organic hydroperoxide resistance protein XOO4456 104 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 58583219 Common rplK 50S ribosomal protein L11 XOO3596 246 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 58581898 Common pthA4 avirulence protein XOO2275 12 None None None 58583690 Common phaE putative monovalent cation/H+ antiporter subunit E XOO4067 78 COG1863 MnhE, Multisubunit Na+/H+ antiporter, MnhE subunit Inorganic ion transport and metabolism 58582948 Common - hypothetical protein XOO3325 176 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 122878987 Common - hemolysin III XOO0165 119 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 58579895 Common tra8 probable remnant of a transposase gene protein XOO0272 8 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58580778 Common - hypothetical protein XOO1155 7 None None None 58582146 Common - possible transposase XOO2523 9 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581747 Common - transcriptional regulator XOO2124 175 COG0583 LysR, Transcriptional regulator Transcription 58580901 Common ptsH phosphotransferase system HPr enzyme XOO1278 153 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 122879168 Common - hypothetical protein XOO2254 16 COG4496 COG4496, Uncharacterized protein conserved in bacteria Function unknown 58584203 Common - hypothetical protein XOO4580 104 COG1533 SplB, DNA repair photolyase DNA replication, recombination, and repair 58579833 Common - IS1478 transposase XOO0210 17 None None None 58584240 Pathogen - hypothetical protein XOO4617 1 None None None 58582325 Common ubiG 3-demethylubiquinone-9 3-methyltransferase XOO2702 201 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 58584048 Pathogen - bleomycin resistance protein XOO4425 2 None None None 58583769 Common - IS1404 transposase XOO4146 102 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583964 Common smeR two-component system regulatory protein XOO4341 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58580179 Common accC acetyl-CoA carboxylase biotin carboxylase subunit XOO0556 231 COG0439 AccC, Biotin carboxylase Lipid metabolism 58580201 Common - hypothetical protein XOO0578 235 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 58582229 Common fliK flagellar protein XOO2606 42 COG3144 FliK, Flagellar hook-length control protein Cell motility and secretion 58580481 Common - conserved hypothetical protein 2 XOO0858 17 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 58582806 Common pheS phenylalanyl-tRNA synthetase subunit alpha XOO3183 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 58582766 Common ftsY cell division protein XOO3143 246 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 58580335 Common - hypothetical protein XOO0712 53 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 58583977 Common gvpU gas vesicle protein XOO4354 4 None None None 122879143 Common - hypothetical protein XOO1907 81 COG2898 COG2898, Uncharacterized conserved protein Function unknown 58583530 Common fyuA TonB-dependent receptor XOO3907 23 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58582745 Common - hypothetical protein XOO3122 8 None None None 58581133 Common cspA major cold shock protein XOO1510 177 COG1278 CspC, Cold shock proteins Transcription 58583843 Common - hypothetical protein XOO4220 125 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 58581673 Common - hypothetical protein XOO2050 184 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 58583614 Common - hypothetical protein XOO3991 33 COG0546 Gph, Predicted phosphatases General function prediction only 58583668 Pathogen - hypothetical protein XOO4045 1 None None None 58580939 Pathogen lamA endo-1,3-beta-glucanase XOO1316 1 None None None 122879091 Common - IS1404 transposase XOO1361 115 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583148 Pathogen - hypothetical protein XOO3525 1 COG2363 COG2363, Uncharacterized small membrane protein Function unknown 58584015 Common - integral membrane protein XOO4392 13 None None None 58583709 Common hemY porphyrin biosynthesis protein XOO4086 27 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 58583110 Common - EF hand domain protein XOO3487 16 COG3179 COG3179, Predicted chitinase General function prediction only 58582927 Common - hypothetical protein XOO3304 60 COG3028 COG3028, Uncharacterized protein conserved in bacteria Function unknown 58582105 Common secD preprotein translocase subunit SecD XOO2482 220 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 58583077 Common - hypothetical protein XOO3454 4 None None None 122879114 Common pilS two-component system sensor protein XOO1592 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58583112 Common - hypothetical protein XOO3489 10 None None None 58580067 Common - hypothetical protein XOO0444 8 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 58584135 Common yehX ABC transporter ATP-binding protein XOO4512 249 COG1125 OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components Amino acid transport and metabolism 58579774 Common - putative ISXo8 transposase XOO0151 11 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583376 Common lgt prolipoprotein diacylglyceryl transferase XOO3753 207 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 58581785 Common - hypothetical protein XOO2162 148 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 58583587 Common - hypothetical protein XOO3964 50 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 58581450 Common - histidine kinase-response regulator hybrid protein XOO1827 222 COG3292 COG3292, Predicted periplasmic ligand-binding sensor domain Signal transduction mechanisms 58582991 Common - hypothetical protein XOO3368 8 None None None 58581515 Common yegD heat shock protein XOO1892 57 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 58579808 Common - putative ISXo8 transposase XOO0185 25 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58581260 Common - putative transposase XOO1637 41 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58584093 Common recB exodeoxyribonuclease V beta chain XOO4470 148 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 58580947 Common - hypothetical protein XOO1324 9 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 58580811 Common - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain XOO1188 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58583925 Common trxA thioredoxin XOO4302 232 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 58582574 Common - hypothetical protein XOO2951 94 COG1534 COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein Translation, ribosomal structure and biogenesis 58580020 Common gst glutathione S-transferase XOO0397 98 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 58580890 Common - amino acid transporter XOO1267 153 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 58580039 Common - Membrane-fusion protein XOO0416 22 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 58581255 Common cyoD cytochrome O ubiquinol oxidase subunit IV XOO1632 48 COG3125 CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 Energy production and conversion 58579812 Common kduI 5-keto-4-deoxyuronate isomerase XOO0189 27 COG3717 KduI, 5-keto 4-deoxyuronate isomerase Carbohydrate transport and metabolism 58580034 Pathogen - hypothetical protein XOO0411 1 None None None 58582080 Common cynT carbonic anhydrase XOO2457 147 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 58583427 Common dgd D-galactose 1-dehydrogenase XOO3804 97 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 58582085 Common pstS ABC transporter phosphate binding protein XOO2462 100 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 58581712 Common - putative ISXo8 transposase XOO2089 10 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580906 Common - sigma-54 modulation protein XOO1283 102 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 58583322 Pathogen - hypothetical protein XOO3699 1 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 58583597 Common - putative transposase XOO3974 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583718 Common - hypothetical protein XOO4095 2 None None None 58582517 Common - hypothetical protein XOO2894 79 COG2258 COG2258, Uncharacterized protein conserved in bacteria Function unknown 58581332 Common - phage-related capsid completion protein XOO1709 14 None None None 58579939 Common - possible transposase XOO0316 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582338 Common uup ABC transporter ATP-binding protein XOO2715 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 58583153 Common minC septum formation inhibitor XOO3530 80 COG0850 MinC, Septum formation inhibitor Cell division and chromosome partitioning 122879315 Common - 1,4-beta-cellobiosidase XOO4035 21 COG5297 CelA, Cellobiohydrolase A (1,4-beta-cellobiosidase A) Carbohydrate transport and metabolism 58582998 Common - hypothetical protein XOO3375 44 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 58581343 Common - hypothetical protein XOO1720 6 None None None 58580653 Common - DNA replication protein XOO1030 52 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 58582853 Common nuoF NADH-ubiquinone oxidoreductase NQO1 subunit XOO3230 165 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 58583221 Common secE preprotein translocase subunit SecE XOO3598 8 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 58581306 Pathogen - hypothetical protein XOO1683 1 None None None 58583031 Common cysG siroheme synthase XOO3408 203 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 58580106 Common pcaG protocatechuate 3,4-dioxygenase alpha chain XOO0483 38 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 161898974 Common rpsO 30S ribosomal protein S15 XOO3215 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 58581007 Common - IS1404 transposase XOO1384 64 None None None 161899019 Common def peptide deformylase XOO0585 214 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 58581727 Common - ISxac1 transposase XOO2104 12 None None None 122879318 Common - tryptophan 2,3-dioxygenase XOO4075 42 COG3483 TDO2, Tryptophan 2,3-dioxygenase (vermilion) Amino acid transport and metabolism 58584247 Pathogen - hypothetical protein XOO4624 1 None None None 58579714 Common hrcN type III secretion system ATPase XOO0091 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 58584157 Common - hypothetical protein XOO4534 31 COG4807 COG4807, Uncharacterized protein conserved in bacteria Function unknown 58584228 Common - hypothetical protein XOO4605 4 COG4430 COG4430, Uncharacterized protein conserved in bacteria Function unknown 58584053 Common exuT hexuranate transporter XOO4430 196 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 58581587 Common lpxB lipid-A-disaccharide synthase XOO1964 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 58583279 Common - hypothetical protein XOO3656 29 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 58579796 Common - hypothetical protein XOO0173 16 COG1748 LYS9, Saccharopine dehydrogenase and related proteins Amino acid transport and metabolism 121632073 Pathogen - hypothetical protein XOO4766 1 None None None 58580041 Common ankB ankyrin-like protein XOO0418 93 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 58581070 Common cstA carbon starvation protein A XOO1447 106 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 58583702 Common - transposase XOO4079 31 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579850 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA XOO0227 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 58583825 Common ntrC two-component system regulatory protein XOO4202 220 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 58583570 Common pbeF hypothetical protein XOO3947 23 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 58583422 Common - methyltransferase XOO3799 31 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 58583433 Common metF 5,10-methylenetetrahydrofolate reductase XOO3810 145 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 58583458 Common - hypothetical protein XOO3835 45 COG3332 COG3332, Uncharacterized conserved protein Function unknown 58580771 Common rpoZ DNA-directed RNA polymerase subunit omega XOO1148 114 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 58582685 Common - hypothetical protein XOO3062 5 None None None 58581166 Pathogen - hypothetical protein XOO1543 3 None None None 58580919 Common - hypothetical protein XOO1296 3 None None None 121632087 Pathogen - hypothetical protein XOO4788 1 None None None 58580740 Common dctA C4-dicarboxylate transporter DctA XOO1117 155 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 58583059 Common - endoproteinase Arg-C XOO3436 13 None None None 58582558 Common rsc17 probable bacteriophage endolysin protein XOO2935 8 COG4678 COG4678, Muramidase (phage lambda lysozyme) Carbohydrate transport and metabolism 58582331 Common - GGDEF family protein XOO2708 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 58580387 Common gph phosphoglycolate phosphatase XOO0764 187 COG0546 Gph, Predicted phosphatases General function prediction only 58581664 Common - hypothetical protein XOO2041 117 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 121632108 Common - IS1404 transposase XOO4828 62 None None None 58582756 Common - hypothetical protein XOO3133 44 COG4805 COG4805, Uncharacterized protein conserved in bacteria Function unknown 122879242 Common - peptidase XOO3125 27 COG4934 COG4934, Predicted protease Posttranslational modification, protein turnover, chaperones 58583123 Common - hypothetical protein XOO3500 4 None None None 58580190 Common priA primosome assembly protein PriA XOO0567 212 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 122879023 Common algC phosphomannomutase XOO0498 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 58584105 Common yojM superoxide dismutase like protein XOO4482 72 COG2032 SodC, Cu/Zn superoxide dismutase Inorganic ion transport and metabolism 58580899 Common mgtE Mg++ transporter XOO1276 170 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 58581250 Common lspA lipoprotein signal peptidase XOO1627 190 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 58582665 Pathogen - hypothetical protein XOO3042 1 None None None 58582784 Common blc outer membrane lipoprotein Blc XOO3161 73 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 58583301 Common - hypothetical protein XOO3678 11 COG3147 DedD, Uncharacterized protein conserved in bacteria Function unknown 58579726 Common - hypothetical protein XOO0103 15 None None None 58580484 Common bfrC iron receptor XOO0861 87 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 58580252 Common - hypothetical protein XOO0629 11 None None None 58581125 Common nthA nitrilase XOO1502 81 COG0388 COG0388, Predicted amidohydrolase General function prediction only 58580598 Common gatAX Glu-tRNAGln amidotransferase A subunit XOO0975 55 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 58581584 Common accA acetyl-CoA carboxylase carboxyltransferase subunit alpha XOO1961 204 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 58583237 Common yneN thioredoxin XOO3614 145 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 122878991 Common glgB1 glycogen branching enzyme XOO0194 144 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 58583742 Common - possible transposase XOO4119 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580500 Common - hypothetical protein XOO0877 52 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 58582211 Common - response regulator XOO2588 211 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 58580090 Common zwf glucose-6-phosphate 1-dehydrogenase XOO0467 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 122879030 Common pilA fimbrial protein XOO0581 20 COG4969 PilA, Tfp pilus assembly protein, major pilin PilA Cell motility and secretion / Intracellular trafficking and secretion 58584020 Common - hypothetical protein XOO4397 37 None None None 58581823 Common - hypothetical protein XOO2200 114 COG2855 COG2855, Predicted membrane protein Function unknown 58583230 Common hemA glutamyl-tRNA reductase XOO3607 180 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 58579936 Common - transposase XOO0313 32 None None None 58582776 Pathogen - hypothetical protein XOO3153 1 None None None 58581309 Pathogen - hypothetical protein XOO1686 1 None None None 58583916 Pathogen - hypothetical protein XOO4293 1 None None None 58580380 Pathogen - hypothetical protein XOO0757 1 None None None 58581183 Common ttgF outer membrane channel protein XOO1560 107 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 58579978 Pathogen - IS1478 transposase XOO0355 1 None None None 58583461 Common - hypothetical protein XOO3838 59 COG3107 LppC, Putative lipoprotein General function prediction only 58580151 Common ampE transmembrane protein XOO0528 17 COG3725 AmpE, Membrane protein required for beta-lactamase induction Defense mechanisms 58580430 Common - hypothetical protein XOO0807 23 COG2966 COG2966, Uncharacterized conserved protein Function unknown 58580477 Common xpsL general secretion pathway protein L XOO0854 8 COG3166 PilN, Tfp pilus assembly protein PilN Cell motility and secretion / Intracellular trafficking and secretion 122879202 Common proB gamma-glutamyl kinase XOO2666 181 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 58582671 Common - hypothetical protein XOO3048 29 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 58583944 Common - hydroxylase XOO4321 91 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 58581871 Common - hypothetical protein XOO2248 25 None None None 58580727 Common oprO porin O XOO1104 18 COG3746 OprP, Phosphate-selective porin Inorganic ion transport and metabolism 58581289 Common tolR TolR XOO1666 124 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 58583950 Pathogen - hypothetical protein XOO4327 2 None None None 58580174 Pathogen - hypothetical protein XOO0551 1 None None None 58580453 Common - hypothetical protein XOO0830 19 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 58580218 Common yncA phosphinothricin acetyltransferase XOO0595 104 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 58582656 Common - hypothetical protein XOO3033 89 COG0583 LysR, Transcriptional regulator Transcription 58580136 Common - hypothetical protein XOO0513 191 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 58581719 Common - putative transposase XOO2096 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58582263 Common acrD transport protein XOO2640 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 58583754 Common - disulphide-isomerase XOO4131 13 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 58579910 Pathogen - hypothetical protein XOO0287 1 None None None 58582071 Common - MutT/nudix family protein XOO2448 121 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 58581205 Common - putative ISXo8 transposase XOO1582 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580008 Pathogen - hypothetical protein XOO0385 1 None None None 58581501 Common - hypothetical protein XOO1878 55 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 58580716 Common - hypothetical protein XOO1093 9 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 58584029 Common tatC sec-independent protein translocase XOO4406 205 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 58584234 Common - IS1478 transposase XOO4611 18 None None None 58580437 Common - ISxac1 transposase XOO0814 15 None None None 58582444 Pathogen - hypothetical protein XOO2821 1 None None None 58580170 Common - putative ISXo8 transposase XOO0547 10 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 161898994 Common - manganese transport regulator MntR XOO2206 91 COG1321 TroR, Mn-dependent transcriptional regulator Transcription 58580817 Common modB molybdate ABC transporter permease protein XOO1194 228 COG4149 ModC, ABC-type molybdate transport system, permease component Inorganic ion transport and metabolism 58583971 Common - transcriptional regulator merR family XOO4348 4 COG0789 SoxR, Predicted transcriptional regulators Transcription 58581458 Common - hypothetical protein XOO1835 25 COG3669 COG3669, Alpha-L-fucosidase Carbohydrate transport and metabolism 58583181 Common rpoA DNA-directed RNA polymerase subunit alpha XOO3558 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 58580460 Pathogen - hypothetical protein XOO0837 1 None None None 161899015 Common xerD site-specific tyrosine recombinase XerD XOO0839 226 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 58580592 Common - putative transposase XOO0969 45 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583909 Common - hypothetical protein XOO4286 96 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 58583654 Common - hypothetical protein XOO4031 18 COG2013 COG2013, Uncharacterized conserved protein Function unknown 58582468 Common tsr chemotaxis protein XOO2845 152 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 58583255 Pathogen - hypothetical protein XOO3632 1 None None None 58581848 Common tex transcription-related protein XOO2225 216 COG2183 Tex, Transcriptional accessory protein Transcription 58583820 Common secB preprotein translocase subunit SecB XOO4197 107 COG1952 SecB, Preprotein translocase subunit SecB Intracellular trafficking and secretion 58580029 Common - endonuclease XOO0406 42 COG1864 NUC1, DNA/RNA endonuclease G, NUC1 Nucleotide transport and metabolism 58583959 Common metR transcriptional regulator metE/metH family XOO4336 170 COG0583 LysR, Transcriptional regulator Transcription 122879125 Common - IS1478 transposase XOO1678 30 None None None 58582311 Pathogen - hypothetical protein XOO2688 1 None None None 58582523 Common feoA ferrous iron transport protein XOO2900 16 COG1918 FeoA, Fe2+ transport system protein A Inorganic ion transport and metabolism 58582967 Common - ISxac1 transposase XOO3344 15 None None None 58579970 Common - hypothetical protein XOO0347 4 COG3184 COG3184, Uncharacterized protein conserved in bacteria Function unknown 58583735 Pathogen - hypothetical protein XOO4112 1 None None None 58582631 Pathogen - hypothetical protein XOO3008 1 COG3114 CcmD, Heme exporter protein D Intracellular trafficking and secretion 58583635 Common - possible transposase XOO4012 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583250 Common - putative transposase XOO3627 44 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580224 Common - putative transposase XOO0601 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581741 Common - putative transposase XOO2118 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579624 Common dnaA chromosomal replication initiation protein XOO0001 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 58582783 Common - putative transposase XOO3160 38 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583380 Common dgkA diacylglycerol kinase XOO3757 79 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 58579646 Common - hypothetical protein XOO0023 33 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 58580376 Common - putative transposase XOO0753 41 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580392 Common ptps 6-pyruvoyl tetrahydrobiopterin synthase XOO0769 123 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 58579658 Common - hypothetical protein XOO0035 23 None None None 58583851 Common - transferase XOO4228 186 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 58579633 Common exbD1 biopolymer transport ExbD1 protein XOO0010 135 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 58584198 Common btuE glutathione peroxidase XOO4575 113 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 58583511 Common - IS1404 transposase XOO3888 105 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579955 Common idnK gluconokinase XOO0332 82 COG3265 GntK, Gluconate kinase Carbohydrate transport and metabolism 58583602 Common codA cytosine deaminase XOO3979 158 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 58583886 Common icfG IcfG protein XOO4263 105 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 58581866 Common thrB homoserine kinase XOO2243 55 COG0083 ThrB, Homoserine kinase Amino acid transport and metabolism 58579693 Common - putative ISXo8 transposase XOO0070 16 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580398 Pathogen uptE outer membrane protein XOO0775 2 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 58580682 Common moaA molybdenum cofactor biosynthesis protein A XOO1059 194 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 58582567 Common - hypothetical protein XOO2944 191 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 58582951 Common rlpB lipoprotein XOO3328 40 COG2980 RlpB, Rare lipoprotein B Cell envelope biogenesis, outer membrane 121632042 Common rpmF 50S ribosomal protein L32 XOO4732 102 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 58583308 Common - hypothetical protein XOO3685 34 COG4247 Phy, 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) Lipid metabolism 121632049 Pathogen - hypothetical protein XOO4739 1 None None None 58583517 Common - putative transposase XOO3894 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58582690 Common phhB pterin-4-alpha-carbinolamine dehydratase XOO3067 121 COG2154 COG2154, Pterin-4a-carbinolamine dehydratase Coenzyme metabolism 58580149 Common - hypothetical protein XOO0526 27 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 58582235 Common fliQ flagellar biosynthesis XOO2612 8 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 58580944 Common ffh signal recognition particle protein XOO1321 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 58581922 Common exbB biopolymer transport protein XOO2299 67 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 58580552 Common - transcriptional regulator XOO0929 99 COG1309 AcrR, Transcriptional regulator Transcription 58582174 Common aat leucyl/phenylalanyl-tRNA--protein transferase XOO2551 134 COG2360 Aat, Leu/Phe-tRNA-protein transferase Posttranslational modification, protein turnover, chaperones 58584117 Common - hypothetical protein XOO4494 65 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 58582250 Common - Transposase and inactivated derivatives, IS30 family XOO2627 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58582035 Common zipA cell division protein ZipA XOO2412 41 COG3115 ZipA, Cell division protein Cell division and chromosome partitioning 58580784 Common pilQ fimbrial assembly protein XOO1161 140 COG4796 HofQ, Type II secretory pathway, component HofQ Intracellular trafficking and secretion 58581089 Common cheR response regulator for chemotaxis XOO1466 149 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 58582024 Common - acyltransferase, putative XOO2401 63 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 58582068 Pathogen - hypothetical protein XOO2445 2 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 121632019 Pathogen - putative ISXo8 transposase XOO4704 1 None None None 58581656 Common pdxY pyridoxine kinase XOO2033 66 COG2240 PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase Coenzyme metabolism 58583782 Common - hypothetical protein XOO4159 18 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 121632054 Common - carbamoylphosphate synthase large subunit (split gene in MJ) XOO4744 15 None None None 58580631 Pathogen - ISxac1 transposase XOO1008 1 None None None 58581466 Common fadE9 acyl-CoA dehydrogenase XOO1843 165 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 58580533 Common cbpA curved DNA binding protein XOO0910 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 58579863 Common - sensor histidine kinase XOO0240 132 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58580537 Common - hypothetical protein XOO0914 6 COG3242 COG3242, Uncharacterized protein conserved in bacteria Function unknown 58581191 Common - putative transposase XOO1568 41 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579739 Common glgY maltooligosyltrehalose synthase XOO0116 100 COG3280 TreY, Maltooligosyl trehalose synthase Carbohydrate transport and metabolism 58583484 Common - TonB-dependent receptor, putative XOO3861 47 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58583720 Pathogen - hypothetical protein XOO4097 1 None None None 58584145 Pathogen - transposase XOO4522 1 None None None 58583261 Common exo exodeoxyribonuclease IX XOO3638 216 COG0258 Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair 58582362 Common - putative transposase XOO2739 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122878995 Pathogen - hypothetical protein XOO0217 1 None None None 58582456 Common cheW chemotaxis protein XOO2833 90 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 122879289 Common - hypothetical protein XOO3776 58 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580572 Common - transcriptional regulator XOO0949 73 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 58579705 Common hrcQ hrpD1 XOO0082 11 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 58580646 Common - transposase XOO1023 32 None None None 58581415 Common - hypothetical protein XOO1792 212 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 58582841 Common infB translation initiation factor IF-2 XOO3218 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 58581988 Common folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine XOO2365 200 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 58582778 Common - hypothetical protein XOO3155 26 COG5340 COG5340, Predicted transcriptional regulator Transcription 58583877 Common - putative transposase XOO4254 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58584175 Pathogen mltA transglycosylase associated protein XOO4552 1 COG2261 COG2261, Predicted membrane protein Function unknown 58581821 Common - transcriptional regulator lysR family XOO2198 182 COG0583 LysR, Transcriptional regulator Transcription 58584166 Common tcsR two-component system regulatory protein XOO4543 172 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 122879066 Common - hypothetical protein XOO1051 4 None None None 122879371 Common - putative ISXo8 transposase XOO4591 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58581008 Common - IS1478 transposase XOO1385 19 None None None 58580888 Pathogen - hypothetical protein XOO1265 1 None None None 58584072 Common - putative transposase XOO4449 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580902 Common - hypothetical protein XOO1279 58 COG2893 ManX, Phosphotransferase system, mannose/fructose-specific component IIA Carbohydrate transport and metabolism 58584000 Common accC biotin carboxylase XOO4377 237 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 58583198 Common rpmC 50S ribosomal protein L29 XOO3575 108 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 58583626 Pathogen - hypothetical protein XOO4003 1 None None None 122879064 Pathogen - hypothetical protein XOO1040 2 None None None 58583888 Common - hypothetical protein XOO4265 34 COG2172 RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) Signal transduction mechanisms 121632060 Common - MFS transporter XOO4751 11 None None None 121632069 Pathogen - hypothetical protein XOO4761 1 None None None 58580958 Common - glutathione transferase XOO1335 16 None None None 58582185 Common - HrpX related protein XOO2562 161 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 58582249 Common tnpA transposase XOO2626 30 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58579924 Common - possible transposase XOO0301 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580202 Common topA DNA topoisomerase III XOO0579 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 58580405 Common wxoD putative o-antigen acetylase XOO0782 31 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 58579887 Common - hypothetical protein XOO0264 22 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 58581346 Common recQ DNA helicase XOO1723 228 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 58583476 Common ribA GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase XOO3853 229 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 58580955 Common - ISxac1 transposase XOO1332 15 None None None 58581527 Common - hypothetical protein XOO1904 29 COG4339 COG4339, Uncharacterized protein conserved in bacteria Function unknown 58583334 Pathogen - hypothetical protein XOO3711 1 None None None 58581097 Common - hypothetical protein XOO1474 84 COG2961 ComJ, Protein involved in catabolism of external DNA General function prediction only 58580645 Common - putative transposase XOO1022 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582369 Pathogen - hypothetical protein XOO2746 1 None None None 58581138 Pathogen - hypothetical protein XOO1515 1 None None None 58582942 Common - putative transposase XOO3319 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581039 Common proC pyrroline-5-carboxylate reductase XOO1416 208 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 58584158 Common - RTS beta protein XOO4535 120 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 58581237 Pathogen pthX pathogenicity-related protein XOO1614 2 None None None 58581532 Pathogen - hypothetical protein XOO1909 1 None None None 121632030 Common - IS1404 transposase XOO4717 62 None None None 58580114 Common - oxidoreductase XOO0491 223 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 58581298 Common - transposase XOO1675 52 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879232 Common kdsA 2-dehydro-3-deoxyphosphooctonate aldolase XOO2966 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 58579686 Common - putative transposase XOO0063 45 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879302 Common - hypothetical protein XOO3942 13 COG3147 DedD, Uncharacterized protein conserved in bacteria Function unknown 58583573 Common prc tail-specific protease XOO3950 182 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 58579938 Common - hypothetical protein XOO0315 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 122879017 Common dinG ATP-dependent DNA helicase DinG XOO0412 135 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 58581013 Common rtxA RtxA XOO1390 206 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 58584125 Common - hypothetical protein XOO4502 64 COG0679 COG0679, Predicted permeases General function prediction only 58581651 Common recN recombination protein N XOO2028 200 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 58582373 Common - 3-methyladenine DNA glycosylase XOO2750 81 COG2094 Mpg, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 58581841 Common hbdH1 D-beta-hydroxybutyrate dehydrogenase XOO2218 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 58581906 Common - transposase XOO2283 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 122879327 Common - peptide synthase XOO4215 194 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 58580036 Common - Membrane-fusion protein XOO0413 7 None None None 58582223 Common fliE flagellar protein XOO2600 77 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 121632040 Pathogen - hypothetical protein XOO4730 1 None None None 58580523 Common - hypothetical protein XOO0900 4 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579962 Common fucP fucose permease XOO0339 48 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 58580230 Common - Modification methylase XorII XOO0607 124 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 58580607 Common - transposase XOO0984 42 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581316 Common - phage-related tail protein XOO1693 19 None None None 58582864 Pathogen - hypothetical protein XOO3241 1 None None None 58580272 Common - D-amino acid oxidase XOO0649 10 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 122879057 Common - hypothetical protein XOO0922 28 COG4391 COG4391, Uncharacterized protein conserved in bacteria Function unknown 58581477 Common - hypothetical protein XOO1854 9 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 122879374 Common trmE tRNA modification GTPase TrmE XOO4634 216 COG0486 ThdF, Predicted GTPase General function prediction only 58580232 Common int phage-related integrase XOO0609 13 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 58580249 Common - ferrichrome-iron receptor 3 XOO0626 115 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 58582171 Common - hypothetical protein XOO2548 81 COG3146 COG3146, Uncharacterized protein conserved in bacteria Function unknown 58581023 Common bedB benzene 1,2-dioxygenase ferredoxin protein XOO1400 50 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 122879344 Pathogen - hypothetical protein XOO4326 3 None None None 58581329 Pathogen - hypothetical protein XOO1706 3 None None None 58580546 Common - glycosyltransferase XOO0923 39 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 58583689 Common phaD putative monovalent cation/H+ antiporter subunit D XOO4066 204 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 58581607 Common glnD PII uridylyl-transferase XOO1984 123 COG2844 GlnD, UTP:GlnB (protein PII) uridylyltransferase Posttranslational modification, protein turnover, chaperones 58583533 Common - transposase XOO3910 32 None None None 58580292 Common - hypothetical protein XOO0669 55 COG4277 COG4277, Predicted DNA-binding protein with the Helix-hairpin-helix motif General function prediction only 58583347 Common - gluconolactonase precursor XOO3724 3 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 58582628 Pathogen - hypothetical protein XOO3005 2 None None None 58580541 Common - IS1478 transposase XOO0918 20 None None None 122879239 Common rne ribonuclease E XOO3073 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 58583745 Common tra8 probable remnant of a transposase gene protein XOO4122 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58582834 Common - hypothetical protein XOO3211 4 COG2835 COG2835, Uncharacterized conserved protein Function unknown 58580563 Common leuB 3-isopropylmalate dehydrogenase XOO0940 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 58581291 Common tolB translocation protein TolB XOO1668 160 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 58579859 Common - IS1404 transposase XOO0236 45 None None None 161899003 Common ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase XOO1628 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 58583103 Common - hypothetical protein XOO3480 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 58582815 Pathogen - IS1478 transposase XOO3192 1 None None None 58583590 Common mrdB rod shape-determining protein XOO3967 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 58582117 Common - putative ISXo8 transposase XOO2494 26 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583129 Common - ATPase involved in DNA repair XOO3506 7 None None None 58580673 Common - hypothetical protein XOO1050 8 None None None 121632027 Common aroE shikimate 5-dehydrogenase XOO4712 213 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 122879354 Common - putative xylanase XOO4429 26 COG3693 XynA, Beta-1,4-xylanase Carbohydrate transport and metabolism 58584193 Common uvrD DNA-dependent helicase II XOO4570 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 58580448 Common - putative ISXo8 transposase XOO0825 26 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 121632021 Pathogen - hypothetical protein XOO4706 1 None None None 58582489 Pathogen - hypothetical protein XOO2866 1 None None None 58584032 Common - hypothetical protein XOO4409 26 COG2930 COG2930, Uncharacterized conserved protein Function unknown 58582341 Common - hypothetical protein XOO2718 110 COG0397 COG0397, Uncharacterized conserved protein Function unknown 58583605 Common tISRso5 ISRSO5-transposase protein XOO3982 36 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583810 Common amaA N-acyl-L-amino acid amidohydrolase XOO4187 166 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 58583623 Common aspC hypothetical protein XOO4000 235 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 122879322 Common - hypothetical protein XOO4130 55 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 58583354 Common pcaQ transcriptional regulator XOO3731 186 COG0583 LysR, Transcriptional regulator Transcription 58582916 Common - acyl-CoA thioester hydrolase XOO3293 134 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 161898970 Common xseB exodeoxyribonuclease VII small subunit XOO3298 17 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 58580790 Common moxR methanol dehydrogenase regulatory protein XOO1167 173 COG0714 COG0714, MoxR-like ATPases General function prediction only 58583088 Common - hypothetical protein XOO3465 10 COG3668 ParE, Plasmid stabilization system protein General function prediction only 58583982 Common - putative transposase XOO4359 42 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580782 Common pilO fimbrial assembly membrane protein XOO1159 47 COG3167 PilO, Tfp pilus assembly protein PilO Cell motility and secretion / Intracellular trafficking and secretion 58579653 Common - putative transposase XOO0030 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58583443 Pathogen - hypothetical protein XOO3820 2 COG4701 COG4701, Uncharacterized protein conserved in bacteria Function unknown 58581968 Common - transcriptional regulator marR family XOO2345 98 COG1846 MarR, Transcriptional regulators Transcription 58581913 Common - hypothetical protein XOO2290 3 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 122879215 Common - formate dehydrogenase a chain XOO2789 169 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 58581999 Common czcB cation efflux system protein XOO2376 140 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 58581795 Common lacG ABC transporter sugar permease XOO2172 170 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 58582222 Common rbfC O-antigen biosynthesis protein XOO2599 108 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 58582653 Common - VirG-like two component response regulator XOO3030 222 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58581409 Common - hypothetical protein XOO1786 203 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 58582545 Pathogen - hypothetical protein XOO2922 2 COG3317 NlpB, Uncharacterized lipoprotein Cell envelope biogenesis, outer membrane 58580084 Common - dolichyl-phosphate mannose synthase related protein XOO0461 156 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 58581938 Common glk glucokinase XOO2315 91 COG0837 Glk, Glucokinase Carbohydrate transport and metabolism 58581446 Common - cold shock domain protein XOO1823 16 None None None 58581635 Common - Transposase and inactivated derivatives, IS30 family XOO2012 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58584206 Common - hypothetical protein XOO4583 154 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 121632053 Common - putative transposase XOO4743 21 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581831 Common - hypothetical protein XOO2208 213 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 58584101 Common - microcystin dependent protein XOO4478 34 COG4675 MdpB, Microcystin-dependent protein Function unknown 121632097 Common - IS1404 transposase XOO4799 62 None None None 58583166 Common raxB putative ABC transporter protein RaxB XOO3543 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 58583831 Common - hypothetical protein XOO4208 4 None None None 58580013 Common - TonB-like protein XOO0390 21 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 58580418 Common rmlD dTDP-4-dehydrorhamnose reductase XOO0795 170 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 58582956 Common - hypothetical protein XOO3333 18 None None None 58583901 Pathogen - hypothetical protein XOO4278 1 None None None 58582318 Common - putative ISXo8 transposase XOO2695 15 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582584 Common ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XOO2961 190 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 58583921 Common - response regulator protein XOO4298 136 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 58581065 Common - alcohol dehydrogenase XOO1442 65 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 161899022 Common nrdA ribonucleotide-diphosphate reductase subunit alpha XOO0474 221 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 122879227 Common xylE MFS transporter XOO2909 118 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58583802 Common - hypothetical protein XOO4179 9 None None None 58581805 Pathogen - hypothetical protein XOO2182 1 None None None 58583644 Common - histidine kinase-response regulator hybrid protein XOO4021 189 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 58583914 Pathogen - ISxac1 transposase XOO4291 5 None None None 58580693 Common - hypothetical protein XOO1070 41 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 121632028 Pathogen - hypothetical protein XOO4713 1 COG5510 COG5510, Predicted small secreted protein Function unknown 121632066 Common - IS1404 transposase XOO4757 62 None None None 58580326 Common rsuA ribosomal small subunit pseudouridylate synthase XOO0703 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 122879333 Common - hypothetical protein XOO4268 20 COG3660 COG3660, Predicted nucleoside-diphosphate-sugar epimerase Cell envelope biogenesis, outer membrane 58583817 Common - hypothetical protein XOO4194 23 None None None 58579872 Common - OmpA-related protein XOO0249 26 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58580806 Common - hypothetical protein XOO1183 16 None None None 58581051 Common osmC osmotically inducible protein XOO1428 80 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 58581225 Common - hypothetical protein XOO1602 74 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 121632105 Pathogen - hypothetical protein XOO4824 1 None None None 58581046 Common tag DNA-3-methyladenine glycosylase I XOO1423 131 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 58580732 Common - transcriptional regulator luxR/uhpA family XOO1109 181 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 58581861 Common - hypothetical protein XOO2238 47 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 58582577 Common - hypothetical protein XOO2954 53 COG1238 COG1238, Predicted membrane protein Function unknown 58579941 Common - putative transposase XOO0318 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580657 Common clpX ATP-dependent protease ATP-binding subunit XOO1034 226 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 58581896 Common - FOG: Transposase XOO2273 10 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583162 Common - dipeptidyl carboxypeptidase XOO3539 17 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 121632046 Common - IS1404 transposase XOO4736 61 None None None 58583283 Common - putative ISXo8 transposase XOO3660 26 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582158 Common ndk nucleoside diphosphate kinase XOO2535 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 58581945 Common - two-component system regulatory protein XOO2322 27 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 58581454 Common - histidine kinase-response regulator hybrid protein XOO1831 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 121632114 Common - hypothetical protein YXOOp02 9 None None None 58582601 Common - general stress protein XOO2978 41 COG3871 COG3871, Uncharacterized stress protein (general stress protein 26) General function prediction only 58580742 Common - IS1404 transposase XOO1119 116 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581918 Common kdsB 3-deoxy-manno-octulosonate cytidylyltransferase XOO2295 137 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 58582904 Common - metallopeptidase XOO3281 63 COG3590 PepO, Predicted metalloendopeptidase Posttranslational modification, protein turnover, chaperones 58583349 Common - hypothetical protein XOO3726 3 None None None 122879130 Common - hypothetical protein XOO1757 36 COG2304 COG2304, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 58580797 Common - hypothetical protein XOO1174 32 None None None 58583863 Common polA DNA polymerase I XOO4240 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 58581403 Common - beta-mannosidase XOO1780 46 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 58583494 Common - two-component system sensor protein XOO3871 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58583560 Common - hypothetical protein XOO3937 48 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 58583724 Common - hypothetical protein XOO4101 28 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 58582299 Common argF N-acetylornithine carbamoyltransferase XOO2676 236 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 58583097 Common - hypothetical protein XOO3474 48 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 58580126 Common mcrB mitomycin resistance protein XOO0503 9 None None None 58580514 Common prpR propionate catabolism regulatory protein XOO0891 168 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 122879135 Common - hypothetical protein XOO1816 181 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 58582972 Common glgX glycogen debranching enzyme XOO3349 166 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 58580315 Common lrp leucine responsive regulatory protein XOO0692 153 COG1522 Lrp, Transcriptional regulators Transcription 58582677 Common - putative transposase XOO3054 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58583063 Common - hypothetical protein XOO3440 57 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 58580808 Common - hypothetical protein XOO1185 17 COG0819 TenA, Putative transcription activator Transcription 58580265 Pathogen - hypothetical protein XOO0642 1 None None None 58582421 Common - two-component system regulatory protein XOO2798 222 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 58581420 Common bla beta-lactamase XOO1797 131 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 121632077 Pathogen - hypothetical protein XOO4771 1 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 122879102 Common - response regulator XOO1440 177 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 58581593 Common dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase XOO1970 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 58581921 Common exbD biopolymer transport protein XOO2298 26 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 58582016 Common phaF poly(hydroxyalcanoate) granule associated protein XOO2393 16 None None None 58580055 Pathogen - hypothetical protein XOO0432 1 None None None 58581135 Pathogen - hypothetical protein XOO1512 1 None None None 122879027 Common - hypothetical protein XOO0549 16 None None None 58581429 Pathogen - hypothetical protein XOO1806 2 None None None 122879128 Common - glycosyltransferase XOO1738 182 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 58584243 Common glxK glycerate kinase XOO4620 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 58580210 Common sun Sun XOO0587 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 58584066 Common - possible transposase XOO4443 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581452 Common - histidine kinase-response regulator hybrid protein XOO1829 31 COG3292 COG3292, Predicted periplasmic ligand-binding sensor domain Signal transduction mechanisms 58581551 Common - putative transposase XOO1928 38 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582932 Common - putative transposase XOO3309 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583548 Common - transposase XOO3925 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58583033 Common - hypothetical protein XOO3410 31 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 58580436 Pathogen - putative ISXo8 transposase XOO0813 1 None None None 122879260 Pathogen - hypothetical protein XOO3450 1 COG3001 COG3001, Uncharacterized protein conserved in bacteria Function unknown 58580108 Common catD b-ketoadipate enol-lactone hydrolase XOO0485 144 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 58582781 Common - putative transposase XOO3158 44 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581684 Common - hypothetical protein XOO2061 7 None None None 58583528 Common - putative transposase XOO3905 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58583277 Common - putative ISXo8 transposase XOO3654 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583942 Pathogen - ketosynthase XOO4319 2 COG4648 COG4648, Predicted membrane protein Function unknown 58581201 Common - putative transposase XOO1578 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58579786 Common - hypothetical protein XOO0163 8 None None None 58579943 Common - ISxac1 transposase XOO0320 15 None None None 58582233 Pathogen fliO flagellar protein XOO2610 1 COG3190 FliO, Flagellar biogenesis protein Cell motility and secretion 58582254 Common - Rhs family protein XOO2631 79 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 58582603 Common - MFS transporter XOO2980 115 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58581308 Common - hypothetical protein XOO1685 9 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 58581278 Pathogen - hypothetical protein XOO1655 2 None None None 58584211 Common - hypothetical protein XOO4588 7 COG3595 COG3595, Uncharacterized conserved protein Function unknown 122879001 Pathogen - hypothetical protein XOO0253 1 None None None 58583001 Common - IS1478 transposase XOO3378 18 None None None 58583451 Common mraY phospho-N-acetylmuramoyl-pentapeptide-transferase XOO3828 226 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 58583016 Common pepN aminopeptidase N XOO3393 163 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 58584129 Common - transcriptional regulator XOO4506 13 COG1476 COG1476, Predicted transcriptional regulators Transcription 58579722 Common - putative transposase XOO0099 3 None None None 58581891 Common - hypothetical protein XOO2268 8 None None None 58581720 Pathogen - putative ISXo8 transposase XOO2097 3 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58581740 Common - putative transposase XOO2117 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879019 Common - peptidase XOO0439 57 COG2234 Iap, Predicted aminopeptidases General function prediction only 58583599 Common - hypothetical protein XOO3976 19 COG0546 Gph, Predicted phosphatases General function prediction only 58580908 Common yhbG ABC transporter ATP-binding protein XOO1285 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 58583435 Pathogen - hypothetical protein XOO3812 1 None None None 58582855 Common nuoE NADH dehydrogenase subunit E XOO3232 154 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 58580486 Common - putative glycosyl transferase XOO0863 89 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 122879362 Common - fatty acid desaturase XOO4514 69 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 58583420 Common - hypothetical protein XOO3797 10 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 58582974 Common - putative transposase XOO3351 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58580383 Pathogen - hypothetical protein XOO0760 1 None None None 58581330 Pathogen - hypothetical protein XOO1707 2 None None None 58584068 Common - hypothetical protein XOO4445 162 COG4943 COG4943, Predicted signal transduction protein containing sensor and EAL domains Signal transduction mechanisms 121632140 Pathogen - hypothetical protein XOO4949 1 None None None 58581735 Common - IS1478 transposase XOO2112 18 None None None 58580428 Common yrbF ABC transporter ATP-binding protein XOO0805 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 58579716 Common hrpB8 HrpB8 XOO0093 66 COG4791 EscT, Type III secretory pathway, component EscT Intracellular trafficking and secretion 58584189 Common fldY transcriptional regulator XOO4566 154 COG0583 LysR, Transcriptional regulator Transcription 58580988 Common - hypothetical protein XOO1365 54 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 58583704 Common pdhB pyruvate dehydrogenase E1 beta subunit XOO4081 187 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 58583999 Common - dipeptidyl anminopeptidase XOO4376 134 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 58580385 Common fabA 3-hydroxydecanoyl-(acyl carrier protein) dehydratase XOO0762 82 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 58583072 Pathogen uidR transcriptional regulator uid family XOO3449 2 COG1309 AcrR, Transcriptional regulator Transcription 58584039 Common - hypothetical protein XOO4416 157 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 58583303 Common pgmA phosphoglycerate mutase XOO3680 182 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 58582824 Common pilV pre-pilin leader sequence XOO3201 3 COG4967 PilV, Tfp pilus assembly protein PilV Cell motility and secretion / Intracellular trafficking and secretion 58580773 Common yjgF translation initiation inhibitor XOO1150 188 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 58580910 Common - hypothetical protein XOO1287 8 COG3117 COG3117, Uncharacterized protein conserved in bacteria Function unknown 122879313 Pathogen - hypothetical protein XOO4033 3 None None None 161898985 Common flgG flagellar basal body rod protein FlgG XOO2575 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 58581591 Common oma outer membrane antigen XOO1968 160 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 58582038 Common rpsR 30S ribosomal protein S18 XOO2415 214 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 58582494 Common rpfG response regulator XOO2871 218 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 58583050 Common - transcriptional regulator araC/xylS family XOO3427 107 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 58583762 Pathogen - hypothetical protein XOO4139 1 None None None 58581217 Common sucD succinyl-CoA synthetase subunit alpha XOO1594 213 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 58582501 Common rpfI regulatory protein XOO2878 8 None None None 58582734 Common - putative transposase XOO3111 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579698 Pathogen hpaB HpaB XOO0075 4 None None None 58583682 Pathogen - lytic enzyme XOO4059 1 None None None 58584030 Pathogen tatB sec-independent translocase XOO4407 2 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 58583200 Common rpsC 30S ribosomal protein S3 XOO3577 248 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 58582881 Common - FimV XOO3258 31 COG3170 FimV, Tfp pilus assembly protein FimV Cell motility and secretion / Intracellular trafficking and secretion 58580337 Common yaeE ABC transporter permease XOO0714 132 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 58582428 Common acrB multidrug efflux transporter XOO2805 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 58583374 Common folA dihydrofolate reductase type III XOO3751 144 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 58582388 Common gstA glutathione S-transferase XOO2765 49 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 58579806 Common tra8 probable remnant of a transposase gene protein XOO0183 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58580330 Common - hypothetical protein XOO0707 30 COG3310 COG3310, Uncharacterized protein conserved in bacteria Function unknown 58581263 Common - IS1404 transposase XOO1640 106 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582914 Common - lipoprotein XOO3291 130 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 122879249 Pathogen - integral membrane protein XOO3269 1 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 58584182 Common fldW 4-oxalomesaconate hydratase XOO4559 20 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 122879012 Common ddl D-alanyl-alanine synthetase A XOO0352 211 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 58582530 Pathogen - hypothetical protein XOO2907 1 None None None 58579835 Common comM competence related protein XOO0212 187 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 58582115 Common - IS1478 transposase XOO2492 29 None None None 58582747 Pathogen - hypothetical protein XOO3124 1 COG3408 GDB1, Glycogen debranching enzyme Carbohydrate transport and metabolism 122879050 Common rimI ribosomal-protein-alanine acetyltransferase XOO0812 200 COG0456 RimI, Acetyltransferases General function prediction only 58583243 Common - transcriptional regulator XOO3620 94 COG2606 EbsC, Uncharacterized conserved protein Function unknown 122879171 Common - IS1478 transposase XOO2320 30 None None None 122879345 Common - dehydrogenase XOO4345 161 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 58582960 Common - possible transposase XOO3337 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582760 Common dapA dihydrodipicolinate synthetase XOO3137 233 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 58583463 Common - hypothetical protein XOO3840 12 COG1988 COG1988, Predicted membrane-bound metal-dependent hydrolases General function prediction only 58584046 Common - glucan 1,4-beta-glucosidase XOO4423 112 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 58582774 Pathogen - hypothetical protein XOO3151 1 None None None 58581053 Common - hypothetical protein XOO1430 101 COG0384 COG0384, Predicted epimerase, PhzC/PhzF homolog General function prediction only 58580483 Common - putative transporter XOO0860 48 COG3201 PnuC, Nicotinamide mononucleotide transporter Coenzyme metabolism 58581745 Common - putative transposase XOO2122 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 122879189 Common - hypothetical protein XOO2443 13 COG2945 COG2945, Predicted hydrolase of the alpha/beta superfamily General function prediction only 58582808 Common rpmI 50S ribosomal protein L35 XOO3185 163 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 58580199 Pathogen - hypothetical protein XOO0576 1 None None None 58579776 Common - transposase XOO0153 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58580659 Common hupB histone-like protein XOO1036 210 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 58581614 Common - hypothetical protein XOO1991 6 COG3420 NosD, Nitrous oxidase accessory protein Inorganic ion transport and metabolism 58580091 Common - putative ISXo8 transposase XOO0468 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582803 Common - hypothetical protein XOO3180 98 COG0789 SoxR, Predicted transcriptional regulators Transcription 58580755 Common - hypothetical protein XOO1132 13 COG3079 COG3079, Uncharacterized protein conserved in bacteria Function unknown 58581620 Common - transcriptional regulator XOO1997 95 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 58581448 Common yodB cytochrome B561 XOO1825 90 COG3038 CybB, Cytochrome B561 Energy production and conversion 58580216 Common - hypothetical protein XOO0593 19 COG3402 COG3402, Uncharacterized conserved protein Function unknown 58579797 Pathogen - hypothetical protein XOO0174 1 None None None 58582521 Pathogen - hypothetical protein XOO2898 2 None None None 58581379 Common - hypothetical protein XOO1756 11 None None None 58581675 Common - putative transposase XOO2052 33 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581648 Common - hypothetical protein XOO2025 54 COG2914 COG2914, Uncharacterized protein conserved in bacteria Function unknown 58580138 Common tyrS tyrosyl-tRNA synthetase XOO0515 218 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 161899008 Common rpmE2 50S ribosomal protein L31 type B XOO1153 162 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 161899017 Common dadA D-amino acid dehydrogenase small subunit XOO0693 109 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 58580022 Common - hypothetical protein XOO0399 25 COG4805 COG4805, Uncharacterized protein conserved in bacteria Function unknown 58582925 Common - hypothetical protein XOO3302 17 COG3296 COG3296, Uncharacterized protein conserved in bacteria Function unknown 58579790 Common - hypothetical protein XOO0167 18 COG3359 COG3359, Predicted exonuclease DNA replication, recombination, and repair 58580069 Common yodB cytochrome B561 XOO0446 79 COG3038 CybB, Cytochrome B561 Energy production and conversion 58580185 Common cutA periplasmic divalent cation tolerance protein XOO0562 118 COG1324 CutA, Uncharacterized protein involved in tolerance to divalent cations Inorganic ion transport and metabolism 58581395 Common - Membrane-fusion protein XOO1772 59 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 58581026 Common ynhC ABC transporter permease XOO1403 166 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 58580160 Common purD phosphoribosylamine--glycine ligase XOO0537 234 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 58582579 Common surE stationary phase survival protein SurE XOO2956 186 COG0496 SurE, Predicted acid phosphatase General function prediction only 58580937 Common - IS1478 transposase XOO1314 23 None None None 58581787 Common - hypothetical protein XOO2164 47 COG2350 COG2350, Uncharacterized protein conserved in bacteria Function unknown 58581773 Common cycK C-type cytochrome biogenesis membrane protein XOO2150 145 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 58584012 Pathogen - hypothetical protein XOO4389 1 None None None 121632135 Pathogen - hypothetical protein XOO4930 1 None None None 58581011 Common - homoserine O-succinyltransferase XOO1388 64 COG1897 MetA, Homoserine trans-succinylase Amino acid transport and metabolism 58581738 Common - hypothetical protein XOO2115 12 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 58581752 Common - Transposase and inactivated derivatives XOO2129 146 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579870 Common pyrF orotidine 5'-phosphate decarboxylase XOO0247 149 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 58581247 Common mviN virulence factor XOO1624 188 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 58581517 Pathogen slyD peptidyl-prolyl cis-trans isomerase XOO1894 1 None None None 58580401 Common metB cystathionine gamma-lyase-like protein XOO0778 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 58582199 Common flgH flagellar basal body L-ring protein XOO2576 89 COG2063 FlgH, Flagellar basal body L-ring protein Cell motility and secretion 58580810 Common pflu4968 FOG: TPR repeat XOO1187 15 None None None 58580632 Common - putative ISXo8 transposase XOO1009 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58581535 Common - hypothetical protein XOO1912 36 COG3752 COG3752, Predicted membrane protein Function unknown 58580399 Pathogen - hypothetical protein XOO0776 2 COG2841 COG2841, Uncharacterized protein conserved in bacteria Function unknown 58581940 Common edd phosphogluconate dehydratase XOO2317 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 58580629 Common - possible transposase XOO1006 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582700 Common gacA transcriptional regulator luxR/uhpA family XOO3077 207 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 58582618 Common - hypothetical protein XOO2995 8 COG3146 COG3146, Uncharacterized protein conserved in bacteria Function unknown 122879182 Common hutI imidazolonepropionase XOO2396 100 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 58581257 Common vrgS hypothetical protein XOO1634 58 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 58580942 Common - hypothetical protein XOO1319 63 COG4137 COG4137, ABC-type uncharacterized transport system, permease component General function prediction only 58583661 Common - hypothetical protein XOO4038 13 COG2521 COG2521, Predicted archaeal methyltransferase General function prediction only 58583048 Common - hypothetical protein XOO3425 5 None None None 122879043 Common atpD F0F1 ATP synthase subunit beta XOO0732 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 58580684 Common moaC molybdenum cofactor biosynthesis protein C XOO1061 195 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 58581837 Common mutT 7,8-dihydro-8-oxoguanine-triphosphatase XOO2214 20 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 58584258 Common - polysaccharide deacetylase XOO4635 114 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 58579670 Common - hypothetical protein XOO0047 6 None None None 58580864 Common - probable remnant of a transposase gene protein XOO1241 8 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58580015 Common - Pass1-related protein XOO0392 19 None None None 58580372 Common - possible transposase XOO0749 19 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582149 Common - putative transposase XOO2526 12 None None None 58583361 Common - putative transposase XOO3738 25 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581241 Common - hypothetical protein XOO1618 86 COG0824 FcbC, Predicted thioesterase General function prediction only 58581781 Common - transposase XOO2158 32 None None None 58580538 Common purA adenylosuccinate synthetase XOO0915 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 58583223 Common ychF translation-associated GTPase XOO3600 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 58579679 Common sulA cell division inhibitor XOO0056 107 COG1090 COG1090, Predicted nucleoside-diphosphate sugar epimerase General function prediction only 58581456 Common - hypothetical protein XOO1833 57 None None None 58582351 Common phbB acetoacetyl-CoA reductase XOO2728 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 58583368 Common ostA organic solvent tolerance protein XOO3745 119 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 58582866 Common - possible transposase XOO3243 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879234 Common - hypothetical protein XOO2979 108 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 58583382 Common - hypothetical protein XOO3759 4 None None None 58581005 Common - hypothetical protein XOO1382 5 None None None 58583252 Common pntB pyridine nucleotide transhydrogenase subunit beta XOO3629 123 COG1282 PntB, NAD/NADP transhydrogenase beta subunit Energy production and conversion 58583210 Common tufB elongation factor Tu XOO3587 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 122879107 Common - cysteine protease XOO1487 15 COG4870 COG4870, Cysteine protease Posttranslational modification, protein turnover, chaperones 58580550 Common tolC TolC XOO0927 137 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 121632071 Pathogen - hypothetical protein XOO4763 1 None None None 58579631 Common tonB TonB protein XOO0008 6 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 58582190 Common flgA flagellar basal body P-ring biosynthesis protein FlgA XOO2567 46 COG1261 FlgA, Flagellar basal body P-ring biosynthesis protein Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 58581376 Common - hypothetical protein XOO1753 9 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 58582565 Common lexA LexA repressor XOO2942 174 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 58582683 Pathogen - hypothetical protein XOO3060 3 None None None 58582176 Common clpA ATP-dependent Clp protease subunit XOO2553 222 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 58583819 Common - hypothetical protein XOO4196 138 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 58581653 Common grpE heat shock protein GrpE XOO2030 232 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 58581924 Common - transposase XOO2301 32 None None None 58582144 Common - Transposase and inactivated derivatives, IS30 family XOO2521 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58584055 Common xylP transport protein XOO4432 76 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 58580464 Common purL phosphoribosylformylglycinamidine synthase XOO0841 232 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 58582061 Common - hypothetical protein XOO2438 139 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 58580305 Common cvgSY histidine kinase/response regulator hybrid protein XOO0682 203 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 58582037 Common rplI 50S ribosomal protein L9 XOO2414 216 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 58582720 Common - transposase XOO3097 32 None None None 58583193 Common rplE 50S ribosomal protein L5 XOO3570 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 58582533 Common xylA xylose isomerase XOO2910 68 COG2115 XylA, Xylose isomerase Carbohydrate transport and metabolism 58584111 Common glnA glutamine synthetase XOO4488 224 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 58583270 Common oxyR oxidative stress transcriptional regulator XOO3647 189 COG0583 LysR, Transcriptional regulator Transcription 58580502 Common - hypothetical protein XOO0879 19 None None None 58582047 Common haaO 3-hydroxyanthranilate 3,4-dioxygenase XOO2424 16 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 58583011 Common - tRNA/rRNA methyltransferase XOO3388 198 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 58579756 Common rhlE ATP-dependent RNA helicase XOO0133 239 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 58579957 Common ndvB NdvB protein XOO0334 45 COG3459 COG3459, Cellobiose phosphorylase Carbohydrate transport and metabolism 58581185 Common mexC RND efflux membrane fusion protein XOO1562 88 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 58582888 Pathogen dpsD phosphatidylserine decarboxylase XOO3265 1 None None None 58583995 Common - putative transposase XOO4372 3 None None None 58580147 Pathogen - hypothetical protein XOO0524 3 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 58582667 Common - IS1479 transposase XOO3044 19 None None None 58583397 Common - hypothetical protein XOO3774 53 COG3169 COG3169, Uncharacterized protein conserved in bacteria Function unknown 58582074 Pathogen - peptidyl-prolyl cis-trans isomerase XOO2451 4 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 58581706 Common - hypothetical protein XOO2083 15 COG3791 COG3791, Uncharacterized conserved protein Function unknown 58583313 Common sbp ABC transporter sulfate binding protein XOO3690 90 COG1613 Sbp, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 58581171 Common rfaY RNA polymerase ECF-type sigma factor XOO1548 9 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 122879039 Common xadA outer membrane protein XOO0681 29 COG5295 Hia, Autotransporter adhesin Intracellular trafficking and secretion / Extracellular structures 58580278 Common - transposase XOO0655 41 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582002 Common nodW nodulation protein XOO2379 211 COG4566 TtrR, Response regulator Signal transduction mechanisms 58580000 Common apbA 2-dehydropantoate 2-reductase XOO0377 84 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 58579950 Pathogen - hypothetical protein XOO0327 1 None None None 58579662 Common - transposase XOO0039 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58583744 Common - transposase XOO4121 32 None None None 58579777 Common acrE acriflavin resistance protein XOO0154 159 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 122879008 Common - hypothetical protein XOO0311 5 None None None 58579976 Common ddlA IS1478 transposase XOO0353 18 None None None 58581401 Common - colicin V secretion ABC transporter ATP-binding protein XOO1778 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 122879204 Common - ribonuclease XOO2713 24 COG4290 COG4290, Guanyl-specific ribonuclease Sa Nucleotide transport and metabolism 58580531 Common - peroxiredoxin XOO0908 82 COG0678 AHP1, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 58583923 Common ftsE ABC transporter ATP-binding protein XOO4300 249 COG2884 FtsE, Predicted ATPase involved in cell division Cell division and chromosome partitioning 58583426 Common - hypothetical protein XOO3803 29 COG3122 COG3122, Uncharacterized protein conserved in bacteria Function unknown 58581643 Pathogen - hypothetical protein XOO2020 2 None None None 58583359 Common - putative transposase XOO3736 25 None None None 58583114 Common - ISxac1 transposase XOO3491 15 None None None 58579780 Common tptC ABC transporter ATP-binding protein XOO0157 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 58583812 Common acrD acriflavin resistance protein XOO4189 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 58583775 Common rpsI 30S ribosomal protein S9 XOO4152 234 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 58580510 Common pilZ type IV fimbriae assembly protein XOO0887 34 COG3215 PilZ, Tfp pilus assembly protein PilZ Cell motility and secretion / Intracellular trafficking and secretion 58581582 Common - Outer membrane receptor proteins, mostly Fe transport XOO1959 103 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58580063 Pathogen - hypothetical protein XOO0440 2 None None None 58580720 Common nonF NonF-related protein XOO1097 101 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 58580687 Common dnaX DNA polymerase III subunits gamma and tau XOO1064 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 122879201 Common - cytochrome C4 XOO2645 50 COG2863 COG2863, Cytochrome c553 Energy production and conversion 58582455 Common parA chromosome partioning protein XOO2832 191 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 122878993 Common - putative ISXo8 transposase XOO0209 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583084 Common hsdR type I restriction enzyme EcoKI subunit R XOO3461 117 COG4096 HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 58580478 Common xpsM general secretion pathway protein M XOO0855 5 None None None 58580157 Common - MFS transporter XOO0534 63 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58580815 Pathogen - hypothetical protein XOO1192 1 None None None 58580613 Common tnpA transposase XOO0990 31 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58580254 Pathogen - hypothetical protein XOO0631 1 None None None 58581287 Common - hypothetical protein XOO1664 121 COG0824 FcbC, Predicted thioesterase General function prediction only 58579743 Common - ISxac1 transposase XOO0120 15 None None None 58582895 Common - hypothetical protein XOO3272 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 58582247 Common cheA chemotaxis related protein XOO2624 161 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 58583756 Common - hypothetical protein XOO4133 37 COG1612 CtaA, Uncharacterized protein required for cytochrome oxidase assembly Posttranslational modification, protein turnover, chaperones 58583697 Common yhiP di-tripeptide transporter XOO4074 80 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 58582446 Common - ISxac1 transposase XOO2823 15 None None None 58582996 Common trmB tRNA (guanine-N(7))-methyltransferase XOO3373 176 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 58580729 Common tctE two-component system sensor protein XOO1106 210 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58584026 Common - putative transposase XOO4403 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580153 Common aas 2-acylglycerophosphoethanolamine acyltransferase XOO0530 172 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 58580403 Common - putative glycosyltransferase XOO0780 54 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 58581239 Common - hypothetical protein XOO1616 149 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 121632078 Pathogen - hypothetical protein XOO4774 1 None None None 58581384 Common cutC copper homeostasis protein XOO1761 58 COG3142 CutC, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 58580707 Common - hypothetical protein XOO1084 19 None None None 122879261 Common stkXac1 serine/threonine kinase XOO3451 5 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 58583500 Common gsh1 glutamate-cysteine ligase precursor XOO3877 53 COG3572 GshA, Gamma-glutamylcysteine synthetase Coenzyme metabolism 58583294 Common - hypothetical protein XOO3671 59 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 58581203 Common rhsD RhsD protein XOO1580 58 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 58580459 Common - hypothetical protein XOO0836 99 COG0795 COG0795, Predicted permeases General function prediction only 58580494 Common - hypothetical protein XOO0871 37 None None None 58581075 Common - hypothetical protein XOO1452 19 None None None 58580471 Common xpsF general secretion pathway protein F XOO0848 143 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 58583579 Common dacC penicillin-binding protein 6 XOO3956 155 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 58580981 Common - hypothetical protein XOO1358 26 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 58582010 Common pheA P-protein XOO2387 213 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 58584082 Common - ISxac1 transposase XOO4459 15 None None None 58579842 Common speE spermidine synthase XOO0219 116 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 58582076 Pathogen - hypothetical protein XOO2453 1 None None None 58581592 Common - hypothetical protein XOO1969 209 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 121632116 Pathogen - hypothetical protein YXOOp03 1 None None None 58580411 Common - IS1478 transposase XOO0788 16 None None None 58583712 Common lgtB glycosyltransferase XOO4089 14 COG3306 COG3306, Glycosyltransferase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 58583807 Pathogen tnpX1 IS1113 transposase XOO4184 1 None None None 58579689 Common hrpF HrpF protein XOO0066 4 None None None 58583865 Common - hypothetical protein XOO4242 5 None None None 58582811 Pathogen - maltose transport gene repressor XOO3188 1 COG1609 PurR, Transcriptional regulators Transcription 58582870 Common - hypothetical protein XOO3247 21 COG3794 PetE, Plastocyanin Energy production and conversion 58580709 Common - putative transposase XOO1086 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58581815 Common - hypothetical protein XOO2192 38 COG3492 COG3492, Uncharacterized protein conserved in bacteria Function unknown 58581965 Common aprE extracellular protease XOO2342 20 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 58580313 Common - methionine sulfoxide reductase B XOO0690 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 58581001 Common - putative transposase XOO1378 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58583176 Common - hypothetical protein XOO3553 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58582090 Common - hypothetical protein XOO2467 7 COG5455 COG5455, Predicted integral membrane protein Function unknown 58583773 Common - bacterioferritin-associated ferredoxin XOO4150 30 COG2906 Bfd, Bacterioferritin-associated ferredoxin Inorganic ion transport and metabolism 58583870 Common dgt deoxyguanosinetriphosphate triphosphohydrolase XOO4247 158 COG0232 Dgt, dGTP triphosphohydrolase Nucleotide transport and metabolism 58583580 Common rlpA rare lipoprotein A XOO3957 134 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 58583147 Common - DNA-3-methyladenine glycosylase XOO3524 110 COG0122 AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase DNA replication, recombination, and repair 58581573 Common - IS1478 transposase XOO1950 19 None None None 58583749 Common - hypothetical protein XOO4126 150 COG1610 COG1610, Uncharacterized conserved protein Function unknown 58582575 Common - hypothetical protein XOO2952 42 COG3737 COG3737, Uncharacterized conserved protein Function unknown 58582659 Common ptc1 phosphoprotein phosphatase XOO3036 123 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 58583649 Common - possible transposase XOO4026 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879270 Common - hypothetical protein XOO3536 18 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 121632090 Pathogen - hypothetical protein XOO4791 1 None None None 58580283 Pathogen - hypothetical protein XOO0660 1 None None None 58582882 Common asd aspartate-semialdehyde dehydrogenase XOO3259 236 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 58582480 Common cheR chemotaxis protein methyltransferase XOO2857 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 58582832 Common purK phosphoribosylaminoimidazole carboxylase ATPase subunit XOO3209 193 COG0026 PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) Nucleotide transport and metabolism 58579857 Common - oxidoreductase XOO0234 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 122879104 Pathogen - hypothetical protein XOO1455 6 None None None 58582988 Common - IS1478 transposase XOO3365 19 None None None 122879287 Common - hypothetical protein XOO3742 5 None None None 58580457 Common pepA leucyl aminopeptidase XOO0834 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 58581433 Common - hypothetical protein XOO1810 133 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 58583226 Common - ribose-phosphate pyrophosphokinase XOO3603 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 58583913 Common - ISxac1 transposase XOO4290 9 None None None 58582246 Common cheZ chemotaxis related protein XOO2623 13 COG3143 CheZ, Chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 58579768 Common - IS1478 transposase XOO0145 18 None None None 58582906 Common - methylated-DNA-protein-cysteine S-methyltransferase related protein XOO3283 81 COG3695 COG3695, Predicted methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 58583161 Common yjdB inner membrane protein XOO3538 62 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 58583229 Common - hypothetical protein XOO3606 107 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 58581318 Common - phage-related tail protein XOO1695 34 COG3497 COG3497, Phage tail sheath protein FI General function prediction only 58583726 Common - putative transposase XOO4103 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580583 Common - transposase XOO0960 31 None None None 58580833 Common rimK ribosomal protein S6 modification protein XOO1210 148 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 122879136 Common - homoserine dehydrogenase XOO1820 211 COG0460 ThrA, Homoserine dehydrogenase Amino acid transport and metabolism 58581948 Common - putative transposase XOO2325 23 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583902 Pathogen - hypothetical protein XOO4279 1 None None None 58580568 Common ilvG acetolactate synthase 2 catalytic subunit XOO0945 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 161899011 Common leuD isopropylmalate isomerase small subunit XOO0937 209 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 58580092 Common kefC glutathione-regulated potassium-efflux system protein XOO0469 184 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 122879045 Common - hypothetical protein XOO0765 9 None None None 121632051 Pathogen - hypothetical protein XOO4741 1 None None None 58582839 Common truB tRNA pseudouridine synthase B XOO3216 245 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 58583304 Common - hypothetical protein XOO3681 21 None None None 58579707 Common hrcV HrcV XOO0084 127 COG4789 EscV, Type III secretory pathway, component EscV Intracellular trafficking and secretion 58581652 Common hrcA heat-inducible transcription repressor XOO2029 150 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 122879336 Common aroG phospho-2-dehydro-3-heoxyheptonate aldolase XOO4284 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 58582715 Common - IS1479 transposase XOO3092 19 None None None 58580243 Common - transposase XOO0620 32 None None None 58583621 Common - hypothetical protein XOO3998 64 COG2832 COG2832, Uncharacterized protein conserved in bacteria Function unknown 58580472 Common xpsG general secretion pathway protein G XOO0849 59 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 58580237 Common - IS1404 transposase XOO0614 4 None None None 121632039 Pathogen - hypothetical protein XOO4729 2 None None None 58582156 Common pilF fimbrial biogenesis protein XOO2533 43 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 58581352 Pathogen glk glucose kinase XOO1729 1 COG0837 Glk, Glucokinase Carbohydrate transport and metabolism 58584256 Common phoC phosphatase precursor XOO4633 38 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 58582313 Common - putative ISXo8 transposase XOO2690 9 None None None 58583465 Common kdpE two-component system regulatory protein XOO3842 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58580676 Common - transposase XOO1053 32 None None None 58584069 Common - hypothetical protein XOO4446 38 COG3239 DesA, Fatty acid desaturase Lipid metabolism 121632026 Pathogen - hypothetical protein XOO4711 1 None None None 58580675 Pathogen - hypothetical protein XOO1052 5 None None None 121632132 Pathogen - hypothetical protein YXOOp14 1 None None None 58583837 Common ykgJ ferredoxin XOO4214 18 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 58581226 Common ostB trehalose-6-phosphate phosphatase XOO1603 81 COG1877 OtsB, Trehalose-6-phosphatase Carbohydrate transport and metabolism 58581932 Common sdhD succinate dehydrogenase membrane anchor subunit XOO2309 40 COG2142 SdhD, Succinate dehydrogenase, hydrophobic anchor subunit Energy production and conversion 58582889 Common dniR membrane-bound lytic murein transglycosylase D precursor XOO3266 130 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 58580129 Common - hypothetical protein XOO0506 5 None None None 58583253 Common pntA pyridine nucleotide transhydrogenase subunit alpha XOO3630 65 COG3288 PntA, NAD/NADP transhydrogenase alpha subunit Energy production and conversion 122879256 Common katE catalase XOO3423 126 COG0753 KatE, Catalase Inorganic ion transport and metabolism 58583446 Common ftsA cell division protein XOO3823 185 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 58582963 Common - peptidyl-prolyl cis-trans isomerase XOO3340 53 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 58584031 Common tatA twin argininte translocase protein A XOO4408 35 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 58580519 Common - hypothetical protein XOO0896 55 COG2828 COG2828, Uncharacterized protein conserved in bacteria Function unknown 122879217 Common - hypothetical protein XOO2802 77 COG2902 COG2902, NAD-specific glutamate dehydrogenase Amino acid transport and metabolism 122879109 Common - asparagine synthase XOO1523 154 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 58580446 Common - putative transposase XOO0823 41 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582130 Pathogen - hypothetical protein XOO2507 2 None None None 121632044 Common - transposase XOO4734 12 None None None 58581843 Common phaE PHA synthase subunit XOO2220 6 COG5545 COG5545, Predicted P-loop ATPase and inactivated derivatives General function prediction only 58581483 Common - hypothetical protein XOO1860 47 COG2954 COG2954, Uncharacterized protein conserved in bacteria Function unknown 58582488 Common rpfA aconitate hydratase XOO2865 222 COG1048 AcnA, Aconitase A Energy production and conversion 58583875 Pathogen - hypothetical protein XOO4252 1 None None None 58580604 Common - IS1404 transposase XOO0981 116 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581041 Common pilT twitching motility protein XOO1418 217 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 58581438 Common prfC peptide chain release factor 3 XOO1815 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 58582606 Common - Mg-protoporphyrin IX monomethyl ester oxidative cyclase XOO2983 69 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 58581370 Common pilH PilH XOO1747 210 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58582487 Common - hypothetical protein XOO2864 4 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 58581633 Pathogen - transposase XOO2010 1 None None None 58582288 Common proA gamma-glutamyl phosphate reductase XOO2665 188 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 58580871 Common - potassium channel related protein XOO1248 11 COG1226 Kch, Kef-type K+ transport systems, predicted NAD-binding component Inorganic ion transport and metabolism 58583482 Common - hypothetical protein XOO3859 2 None None None 58580016 Common sapC SapC XOO0393 15 None None None 58583352 Common badH aldehyde dehydrogenase XOO3729 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 58579656 Common - IS1479 transposase XOO0033 19 None None None 58581510 Common - hypothetical protein XOO1887 24 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 58580072 Common prtR transmembrane regulator protein prtR XOO0449 13 COG5662 COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) Transcription 58583452 Common murF UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase XOO3829 208 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 161898979 Common carA carbamoyl phosphate synthase small subunit XOO2888 230 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 58583719 Common - hypothetical protein XOO4096 2 None None None 58582702 Common - hypothetical protein XOO3079 6 None None None 58582418 Common - hypothetical protein XOO2795 9 COG2433 COG2433, Uncharacterized conserved protein Function unknown 58582762 Common soxA sarcosine oxidase alpha subunit XOO3139 16 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 58581471 Common fadB 3-hydroxyacyl-CoA dehydrogenase XOO1848 173 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 58584011 Common - nuclease XOO4388 44 COG2374 COG2374, Predicted extracellular nuclease General function prediction only 58582897 Common - carboxymethylenebutenolidase XOO3274 22 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 58579868 Common - hypothetical protein XOO0245 41 COG3132 COG3132, Uncharacterized protein conserved in bacteria Function unknown 58579750 Common - putative ISXo8 transposase XOO0127 19 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58581894 Common - possible transposase XOO2271 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580050 Common - hypothetical protein XOO0427 53 COG3228 COG3228, Uncharacterized protein conserved in bacteria Function unknown 58584220 Common - hypothetical protein XOO4597 20 None None None 58580529 Common tnpA transposase XOO0906 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58582534 Common - D-xylulokinase XOO2911 155 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 121632103 Pathogen - hypothetical protein XOO4822 1 None None None 58583545 Common - N-acetylglucosaminidase XOO3922 7 None None None 58580764 Common - putative deoxyribonucleotide triphosphate pyrophosphatase XOO1141 237 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 58584238 Common - hypothetical protein XOO4615 20 COG4104 COG4104, Uncharacterized conserved protein Function unknown 161899005 Common cheB chemotaxis-specific methylesterase XOO1465 202 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 58582861 Common tpiA triosephosphate isomerase XOO3238 216 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 58580161 Common - Predicted ATPase XOO0538 60 COG4637 COG4637, Predicted ATPase General function prediction only 58583671 Common - threonine aldolase XOO4048 73 COG2008 GLY1, Threonine aldolase Amino acid transport and metabolism 122879053 Common acnA aconitate hydratase XOO0894 221 COG1048 AcnA, Aconitase A Energy production and conversion 122879223 Common pdeA c-di-GMP phosphodiesterase A XOO2860 188 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 58583156 Pathogen - hypothetical protein XOO3533 2 None None None 58583893 Pathogen - hypothetical protein XOO4270 2 None None None 58583101 Common - hypothetical protein XOO3478 22 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 58582840 Common rbfA ribosome-binding factor A XOO3217 180 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 58580559 Common leuC isopropylmalate isomerase large subunit XOO0936 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 58580188 Pathogen - ribonuclease XOO0565 1 None None None 58580957 Common - putative ISXo8 transposase XOO1334 9 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582617 Common - aminotransferase XOO2994 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 58580479 Pathogen xpsN general secretion pathway protein N XOO0856 2 None None None 58581859 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase XOO2236 188 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 58580954 Pathogen - putative ISXo8 transposase XOO1331 1 None None None 58581611 Common - hypothetical protein XOO1988 106 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 121632032 Pathogen - plasmid-related lipoprotein XOO4720 3 None None None 58583778 Common sugE SugE XOO4155 147 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 58581033 Pathogen - hypothetical protein XOO1410 2 None None None 58580848 Common - cytochrome C6 XOO1225 46 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 121632122 Common - hypothetical protein YXOOp06 3 None None None 58582271 Common - transposase XOO2648 33 None None None 58582306 Common pyrC dihydroorotase XOO2683 209 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 58581084 Pathogen - hypothetical protein XOO1461 2 None None None 58582598 Common - hypothetical protein XOO2975 43 COG1392 COG1392, Phosphate transport regulator (distant homolog of PhoU) Inorganic ion transport and metabolism 122879324 Common - IS1478 transposase XOO4169 29 None None None 58582107 Common tgt queuine tRNA-ribosyltransferase XOO2484 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 58581479 Common era GTP-binding protein Era XOO1856 227 COG1159 Era, GTPase General function prediction only 58583827 Common - hypothetical protein XOO4204 7 None None None 58584218 Common - hypothetical protein XOO4595 37 COG4913 COG4913, Uncharacterized protein conserved in bacteria Function unknown 58584152 Common mocA oxidoreductase XOO4529 200 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 58580353 Common atpA F0F1 ATP synthase subunit alpha XOO0730 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 58583408 Common rbsK ribokinase XOO3785 117 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 58581094 Common - hypothetical protein XOO1471 3 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 58582813 Common - IS1404 transposase XOO3190 58 None None None 58581900 Common - possible transposase XOO2277 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581989 Common pcnB polynucleotide adenyltransferase XOO2366 213 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 58583996 Common - hypothetical protein XOO4373 19 None None None 122878997 Common - IS1478 transposase XOO0221 29 None None None 58581496 Common - hypothetical protein XOO1873 52 COG1407 COG1407, Predicted ICC-like phosphoesterases General function prediction only 58581904 Common tra8 IS163, transposase XOO2281 22 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58581315 Common - hypothetical protein XOO1692 9 None None None 58581423 Common - hypothetical protein XOO1800 26 COG3759 COG3759, Predicted membrane protein Function unknown 58580686 Common moaE molybdopterin-converting factor chain 2 XOO1063 155 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 58582225 Common fliG flagellar protein XOO2602 125 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 58579893 Pathogen fpvA ferripyoverdine receptor XOO0270 1 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 58582003 Common yapH YapH protein XOO2380 76 COG4625 COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain Function unknown 58581054 Common - hypothetical protein XOO1431 42 COG0384 COG0384, Predicted epimerase, PhzC/PhzF homolog General function prediction only 58583790 Common icd isocitrate dehydrogenase XOO4167 65 COG2838 Icd, Monomeric isocitrate dehydrogenase Energy production and conversion 58581875 Common - putative transposase XOO2252 39 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582354 Common - hypothetical protein XOO2731 26 COG3358 COG3358, Uncharacterized conserved protein Function unknown 58582637 Common - avirulence protein XOO3014 13 None None None 122879146 Common - hypothetical protein XOO1931 44 COG4805 COG4805, Uncharacterized protein conserved in bacteria Function unknown 58582206 Common fliS flagellar protein XOO2583 87 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 58581883 Common hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase XOO2260 214 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 58579856 Common bioC biotin synthesis protein XOO0233 106 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 58581328 Common lys phage-related lytic enzyme XOO1705 25 COG3179 COG3179, Predicted chitinase General function prediction only 58583538 Common nagA N-acetylglucosamine-6-phosphate deacetylase XOO3915 118 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 58583592 Common mreD rod shape-determining protein XOO3969 60 COG2891 MreD, Cell shape-determining protein Cell envelope biogenesis, outer membrane 58582562 Common alaS alanyl-tRNA synthetase XOO2939 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 58581359 Common relA ATP:GTP 3'-pyrophosphotranferase XOO1736 205 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 58583980 Common - transposase XOO4357 32 None None None 58583881 Common - IS1478 transposase XOO4258 18 None None None 58580640 Common - possible transposase XOO1017 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879348 Pathogen - hypothetical protein XOO4391 1 None None None 58581162 Common ada DNA methylation and regulatory protein XOO1539 98 COG0122 AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase DNA replication, recombination, and repair 58582473 Common cheW chemotaxis protein XOO2850 120 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 58582323 Common - hypothetical protein XOO2700 3 COG1562 ERG9, Phytoene/squalene synthetase Lipid metabolism 58581214 Common pilR two-component system regulatory protein XOO1591 213 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 58583266 Pathogen - hypothetical protein XOO3643 1 None None None 58582395 Common - hypothetical protein XOO2772 8 None None None 58582877 Common trpF N-(5'-phosphoribosyl)anthranilate isomerase XOO3254 196 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 58582334 Common suhB extragenic supressor protein SuhB XOO2711 210 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 58581799 Common - beta-alanine synthetase XOO2176 201 COG0388 COG0388, Predicted amidohydrolase General function prediction only 58581521 Common - hypothetical protein XOO1898 107 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 58581157 Pathogen - hypothetical protein XOO1534 2 None None None 58583784 Common trpD anthranilate phosphoribosyltransferase XOO4161 217 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 58583491 Common - hypothetical protein XOO3868 43 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 58580261 Common cioB cyanide insensitive terminal oxidase XOO0638 153 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 58580363 Common - Transposase and inactivated derivatives XOO0740 54 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580506 Common fabF 3-oxoacyl-(acyl carrier protein) synthase II XOO0883 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 58583187 Common rpmD 50S ribosomal protein L30 XOO3564 86 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 58580028 Common - transcriptional regulator lysR family XOO0405 141 COG0583 LysR, Transcriptional regulator Transcription 58582252 Common - putative transposase XOO2629 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58582283 Common cydA cytochrome D ubiquinol oxidase subunit I XOO2660 90 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 58580416 Common rmlA glucose-1-phosphate thymidylyltransferase XOO0793 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 58582424 Common - putative transposase XOO2801 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58581764 Common yhdG cationic amino acid transporter XOO2141 192 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 122878981 Common hpaF HpaF XOO0065 34 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 58580534 Common pilH regulatory protein pilH family XOO0911 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 58580266 Common exsF regulatory protein XOO0643 19 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 58583233 Common moaB molybdopterin biosynthesis protein B XOO3610 152 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 121632142 Pathogen - hypothetical protein XOO4951 1 None None None 58579684 Pathogen - hypothetical protein XOO0061 2 None None None 58580721 Common - amylosucrase or alpha amylase XOO1098 144 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 58584025 Common - putative transposase XOO4402 45 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879193 Common - hypothetical protein XOO2488 5 COG3774 OCH1, Mannosyltransferase OCH1 and related enzymes Cell envelope biogenesis, outer membrane 122879062 Common - hypothetical protein XOO1004 16 None None None 58581503 Pathogen - hypothetical protein XOO1880 1 None None None 58583330 Common - putative transposase XOO3707 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58584002 Common acdA acyl-CoA dehydrogenase XOO4379 168 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 58579862 Common mdoD glucan biosynthesis protein D XOO0239 50 COG3131 MdoG, Periplasmic glucans biosynthesis protein Inorganic ion transport and metabolism 58582055 Common - putative oxidoreductase XOO2432 184 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 58580824 Common omp21 outer membrane protein XOO1201 58 COG3047 OmpW, Outer membrane protein W Cell envelope biogenesis, outer membrane 58580744 Pathogen - hypothetical protein XOO1121 2 None None None 121632062 Common - putative transposase XOO4753 28 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581341 Common - hypothetical protein XOO1718 5 None None None 58582048 Pathogen - hypothetical protein XOO2425 1 COG1289 COG1289, Predicted membrane protein Function unknown 58579914 Common - hypothetical protein XOO0291 8 COG3230 HemO, Heme oxygenase Inorganic ion transport and metabolism 58582911 Common dadA D-amino acid dehydrogenase subunit XOO3288 131 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 58582498 Common - inner membrane protein XOO2875 10 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 58582564 Common recA recombinase A XOO2941 219 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 58581930 Common sdhB succinate dehydrogenase iron-sulfur subunit XOO2307 193 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 58580159 Common - hypothetical protein XOO0536 55 COG4637 COG4637, Predicted ATPase General function prediction only 58581708 Common - putative transposase XOO2085 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58579699 Pathogen hrpE HrpE XOO0076 1 None None None 122879173 Common ygdR oligopeptide transporter XOO2350 65 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 58583750 Common rbn ribonuclease BN XOO4127 76 COG1295 Rbn, Predicted membrane protein Function unknown 58583514 Common tnp transposase XOO3891 19 None None None 122879187 Common ligA NAD-dependent DNA ligase LigA XOO2410 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 58580178 Pathogen - hypothetical protein XOO0555 1 None None None 58580434 Common pssA phosphatidylserine synthase XOO0811 135 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 58580228 Common traH TraH protein XOO0605 31 COG3704 VirB6, Type IV secretory pathway, VirB6 components Intracellular trafficking and secretion 58581641 Common - hypothetical protein XOO2018 100 COG1403 McrA, Restriction endonuclease Defense mechanisms 58584087 Pathogen - hypothetical protein XOO4464 1 None None None 58580113 Common - hypothetical protein XOO0490 38 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58581580 Common - hypothetical protein XOO1957 10 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 58580058 Common argI arginase XOO0435 123 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 58581754 Common pthA1 avirulence protein XOO2131 13 None None None 58583746 Common bglX beta-glucosidase XOO4123 117 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 58581579 Common - hypothetical protein XOO1956 5 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 58580713 Common - glutaredoxin-like protein XOO1090 147 COG0278 COG0278, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 161898969 Common rplO 50S ribosomal protein L15 XOO3563 212 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 58580221 Common rpoD RNA polymerase sigma factor RpoD XOO0598 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 58579983 Common - IS1404 transposase XOO0360 61 None None None 58583202 Common rpsS 30S ribosomal protein S19 XOO3579 248 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 58582849 Common nuoJ NADH dehydrogenase subunit J XOO3226 71 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 58581540 Common desC delta 9 acyl-lipid fatty acid desaturase XOO1917 68 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 58583559 Common - two-component system sensor protein XOO3936 222 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 58581402 Common - glucan 1,4-beta-glucosidase XOO1779 96 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 58582215 Common fabH 3-oxoacyl- synthase XOO2592 218 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 122879206 Common - hypothetical protein XOO2735 221 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 58583241 Common - xylanase XOO3618 21 COG5520 COG5520, O-Glycosyl hydrolase Cell envelope biogenesis, outer membrane 58580532 Common hspA low molecular weight heat shock protein XOO0909 128 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 58579974 Common - hypothetical protein XOO0351 5 COG3165 COG3165, Uncharacterized protein conserved in bacteria Function unknown 122878979 Common - hypothetical protein XOO0034 49 None None None 58584127 Pathogen - hypothetical protein XOO4504 1 None None None 58582433 Common fruB multiphosphoryl transfer protein XOO2810 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 58580065 Common - integral membrane protein XOO0442 40 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 58582267 Common czcB cation efflux system protein XOO2644 174 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 122879369 Common - IS1478 transposase XOO4577 30 None None None 122879235 Common - cytochrome like B561 XOO2999 22 COG3038 CybB, Cytochrome B561 Energy production and conversion 122879263 Common - hypothetical protein XOO3473 17 COG4253 COG4253, Uncharacterized protein conserved in bacteria Function unknown 58582560 Common - hypothetical protein XOO2937 6 None None None 58583292 Common ppx exopolyphosphatase XOO3669 179 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 58583990 Common - ISxac1 transposase XOO4367 12 None None None 58580665 Common dnaQ DNA polymerase III subunit epsilon XOO1042 184 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 161898962 Common dapF diaminopimelate epimerase XOO3997 197 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 58580256 Common - hypothetical protein XOO0633 11 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 58581624 Common pmrB multidrug resistance membrane translocase XOO2001 223 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58583695 Common - transcriptional regulator marR/emrR family XOO4072 83 COG1846 MarR, Transcriptional regulators Transcription 58583392 Common - ABC transporter substrate binding protein XOO3769 17 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 58582315 Common - putative transposase XOO2692 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58581868 Common - tannase precursor XOO2245 20 None None None 58580991 Pathogen - hypothetical protein XOO1368 1 None None None 58580734 Common mocA rhizopine catabolism protein mocA XOO1111 102 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 58584036 Pathogen - hypothetical protein XOO4413 1 None None None 58580578 Common - H+ translocating pyrophosphate synthase XOO0955 95 COG3808 OVP1, Inorganic pyrophosphatase Energy production and conversion 161898990 Common upp uracil phosphoribosyltransferase XOO2501 165 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 58583684 Common - metalloproteinase XOO4061 5 COG3227 LasB, Zinc metalloprotease (elastase) Amino acid transport and metabolism 122879073 Common pepQ proline dipeptidase XOO1137 193 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 58583731 Common - hypothetical protein XOO4108 31 COG3786 COG3786, Uncharacterized protein conserved in bacteria Function unknown 58580724 Common cebR transcriptional regulator XOO1101 126 COG1609 PurR, Transcriptional regulators Transcription 58581769 Common - IS1404 transposase XOO2146 10 None None None 58581832 Common orn oligoribonuclease XOO2209 88 COG1949 Orn, Oligoribonuclease (3'->5' exoribonuclease) RNA processing and modification 58580829 Common - transposase XOO1206 32 None None None 58579968 Common - acyltransferase XOO0345 38 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 58582448 Common - putative transposase XOO2825 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58583809 Common - Transposase and inactivated derivatives XOO4186 45 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582842 Common nusA transcription elongation factor NusA XOO3219 218 COG0195 NusA, Transcription elongation factor Transcription 58579672 Common - putative transposase XOO0049 44 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582491 Common rpfB long-chain fatty acyl CoA ligase XOO2868 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 58583503 Common - putative transposase XOO3880 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583019 Common nodQ bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein XOO3396 249 COG2895 CysN, GTPases - Sulfate adenylate transferase subunit 1 Inorganic ion transport and metabolism 122879226 Common hadH2 3-hydroxyacyl-CoA dehydrogenase type II XOO2904 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 58581844 Common phbC poly (3-hydroxybutyric acid) synthase XOO2221 78 COG3243 PhaC, Poly(3-hydroxyalkanoate) synthetase Lipid metabolism 58580421 Common ipsI IpsJ protein XOO0798 104 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 58582141 Common - Transposase and inactivated derivatives XOO2518 5 None None None 58582536 Common - hypothetical protein XOO2913 15 None None None 58583818 Common - hypothetical protein XOO4195 3 None None None 58583028 Common - sensor histidine kinase XOO3405 202 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58580341 Common - hypothetical protein XOO0718 40 COG3663 Mug, G:T/U mismatch-specific DNA glycosylase DNA replication, recombination, and repair 122879180 Common - hypothetical protein XOO2391 9 COG1716 COG1716, FOG: FHA domain Signal transduction mechanisms 58579932 Common yrbE toluene tolerance protein XOO0309 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 58581806 Common - hypothetical protein XOO2183 61 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 58580300 Common - ABC-2 type transporter XOO0677 168 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 58581994 Common nagN IS1404 transposase XOO2371 8 None None None 58582231 Common fliM flagellar motor switch protein FliM XOO2608 113 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 58583372 Common apaG ApaG XOO3749 89 COG2967 ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport Inorganic ion transport and metabolism 58580361 Common - possible transposase XOO0738 14 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879356 Pathogen - hypothetical protein XOO4466 4 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 58581360 Pathogen - hypothetical protein XOO1737 2 None None None 121632018 Pathogen - transposase XOO4703 1 None None None 58582613 Pathogen - hypothetical protein XOO2990 1 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 122879028 Common - putative ISXo8 transposase XOO0564 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583150 Common - two-component system regulatory protein XOO3527 223 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 58582586 Common eno phosphopyruvate hydratase XOO2963 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 58581126 Common - hypothetical protein XOO1503 10 None None None 122879034 Common - putative ISXo8 transposase XOO0647 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58582183 Pathogen - hypothetical protein XOO2560 1 None None None 58583855 Common - site-specific recombinase XOO4232 203 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 58580923 Common - hypothetical protein XOO1300 70 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 58584208 Common serA D-3-phosphoglycerate dehydrogenase XOO4585 227 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 58584144 Pathogen - transposase XOO4521 1 None None None 58580214 Common - hypothetical protein XOO0591 9 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 58583928 Common - hypothetical protein XOO4305 133 COG0729 COG0729, Outer membrane protein Cell envelope biogenesis, outer membrane 161899010 Common icd isocitrate dehydrogenase XOO1024 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 58582133 Common htpG heat shock protein 90 XOO2510 150 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 122879288 Common - hypothetical protein XOO3758 13 None None None 58581677 Common - possible transposase XOO2054 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580594 Common mdh malate dehydrogenase XOO0971 150 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 122879311 Common engXCA cellulase XOO4019 24 COG2730 BglC, Endoglucanase Carbohydrate transport and metabolism 58581794 Common lacF ABC transporter sugar permease XOO2171 143 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 58581282 Common - hypothetical protein XOO1659 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 58584260 Common rnpA ribonuclease P XOO4637 55 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 58580002 Common yadH permease XOO0379 172 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 58582863 Common glbN cyanoglobin XOO3240 18 COG2346 COG2346, Truncated hemoglobins General function prediction only 122879297 Common - two-component system sensor protein XOO3875 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58582118 Common - putative transposase XOO2495 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58581120 Pathogen - cysteine protease XOO1497 1 None None None 58581926 Common - hypothetical protein XOO2303 16 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 58580940 Common - alpha-L-arabinosidase XOO1317 29 COG3534 AbfA, Alpha-L-arabinofuranosidase Carbohydrate transport and metabolism 58579891 Common - transcriptional regulator asnC family XOO0268 115 COG1522 Lrp, Transcriptional regulators Transcription 58580117 Common argS arginyl-tRNA synthetase XOO0494 247 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 122879084 Common purM phosphoribosylaminoimidazole synthetase XOO1297 231 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 58582084 Common phoX phosphate binding protein XOO2461 99 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 58580275 Common - hypothetical protein XOO0652 105 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 58581445 Common - hypothetical protein XOO1822 10 None None None 58580913 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase XOO1290 223 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 58583345 Common gfo glucose-fructose oxidoreductase XOO3722 162 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 58582593 Common - putative transposase XOO2970 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58579709 Pathogen hrpB1 HrpB1 XOO0086 3 None None None 58583051 Pathogen - hypothetical protein XOO3428 1 None None None 161898983 Common flhB flagellar biosynthesis protein FlhB XOO2617 130 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 58581417 Common gcvT glycine cleavage system aminomethyltransferase T XOO1794 178 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 161898989 Common engA GTP-binding protein EngA XOO2529 232 COG1160 COG1160, Predicted GTPases General function prediction only 122879078 Common kch ion transporter XOO1218 91 COG1226 Kch, Kef-type K+ transport systems, predicted NAD-binding component Inorganic ion transport and metabolism 58581701 Pathogen acdA acyl-CoA dehydrogenase XOO2078 1 None None None 122879006 Common - transglycolase; epimerase XOO0288 109 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 58581956 Common - ISRSO5-transposase protein XOO2333 35 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 121632130 Common - IS1404 transposase YXOOp13 62 None None None 58582749 Common - hypothetical protein XOO3126 2 None None None 58583821 Common gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase XOO4198 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 58581353 Pathogen glk glucose kinase XOO1730 2 COG0837 Glk, Glucokinase Carbohydrate transport and metabolism 58580038 Pathogen - transposase XOO0415 1 None None None 58582393 Common - hypothetical protein XOO2770 3 None None None 58583430 Common - quinone reductase XOO3807 170 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 58584044 Common rspA starvation sensing protein XOO4421 99 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 58582307 Common - peptidase XOO2684 187 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 58584222 Common - hypothetical protein XOO4599 47 COG4637 COG4637, Predicted ATPase General function prediction only 58583116 Common - hypothetical protein XOO3493 49 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 122879081 Common - quinol oxidase, subunit I XOO1273 165 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 58581151 Common - short chain dehydrogenase XOO1528 34 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 122879190 Common pstB phosphate ABC transporter ATP-binding protein XOO2465 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 58580488 Common - putative transposase XOO0865 8 None None None 161899002 Common ruvA Holliday junction DNA helicase motor protein XOO1661 210 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 58581779 Common ybdL putative aminotransferase XOO2156 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 58583424 Common - hypothetical protein XOO3801 10 None None None 58581751 Common - hypothetical 125K protein XOO2128 10 None None None 58582669 Common - hypothetical protein XOO3046 46 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 58579700 Pathogen hrpD6 HrpD6 XOO0077 1 None None None 122879266 Common - Outer membrane protein and related peptidoglycan-associated (lipo)proteins XOO3515 165 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 58583379 Common - hypothetical protein XOO3756 132 COG1704 LemA, Uncharacterized conserved protein Function unknown 58582506 Common - transposase XOO2883 33 None None None 58580735 Common ybhD transcriptional regulator XOO1112 191 COG0583 LysR, Transcriptional regulator Transcription 58581292 Common ompP6 outer membrane protein P6 precursor XOO1669 139 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 58579871 Common prnA tryptophan halogenase XOO0248 16 None None None 58580339 Pathogen - hypothetical protein XOO0716 1 None None None 122879368 Common - hypothetical protein XOO4574 4 COG3042 Hlx, Putative hemolysin General function prediction only 122879016 Common piuB iron-uptake factor XOO0407 95 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 58580120 Common dut deoxyuridine 5'-triphosphate nucleotidohydrolase XOO0497 179 COG0756 Dut, dUTPase Nucleotide transport and metabolism 58582689 Common - hypothetical protein XOO3066 83 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 58583030 Common cysB transcriptional regulator CysB-like protein XOO3407 181 COG0583 LysR, Transcriptional regulator Transcription 58579783 Common - Transposase and inactivated derivatives, IS30 family XOO0160 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58581590 Common lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase XOO1967 144 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 58580774 Common recG ATP-dependent DNA helicase XOO1151 211 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 58581506 Common leu leucine dehydrogenase XOO1883 162 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 58583144 Pathogen - hypothetical protein XOO3521 1 None None None 122879307 Common - multidrug resistance efflux pump XOO3983 106 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 58582805 Common pheT phenylalanyl-tRNA synthetase subunit beta XOO3182 247 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 161898999 Common ykfD S-methylmethionine transporter XOO1929 164 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 58583840 Pathogen - hypothetical protein XOO4217 1 None None None 58579654 Common - hypothetical protein XOO0031 27 COG4694 COG4694, Uncharacterized protein conserved in bacteria Function unknown 58581148 Common dnaB replicative DNA helicase XOO1525 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 58581560 Common - IS1478 transposase XOO1937 20 None None None 122878983 Common glgA glycogen synthase XOO0112 127 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 58582300 Pathogen - hypothetical protein XOO2677 2 None None None 58580857 Common - hypothetical protein XOO1234 64 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58581073 Common - hypothetical protein XOO1450 60 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 58580983 Common mphE 4-hydroxy-2-oxovalerate aldolase XOO1360 68 COG3836 HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Carbohydrate transport and metabolism 58581012 Common rtxC RtxC XOO1389 38 COG3239 DesA, Fatty acid desaturase Lipid metabolism 161898993 Common hisF imidazole glycerol phosphate synthase subunit HisF XOO2261 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 58581261 Common - hypothetical protein XOO1638 62 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 58581028 Common ynhE cysteine desulfurase activator complex subunit SufB XOO1405 185 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 58581511 Common - hypothetical protein XOO1888 6 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 58582109 Common - transcriptional regulator asnC/lrp family XOO2486 152 COG1522 Lrp, Transcriptional regulators Transcription 58582552 Pathogen - hypothetical protein XOO2929 1 COG4757 COG4757, Predicted alpha/beta hydrolase General function prediction only 58583758 Common - hypothetical protein XOO4135 12 COG3346 COG3346, Uncharacterized conserved protein Function unknown 58582994 Common - sulfur carrier protein ThiS XOO3371 42 COG2104 ThiS, Sulfur transfer protein involved in thiamine biosynthesis Coenzyme metabolism 161898977 Common truD tRNA pseudouridine synthase D XOO2959 85 COG0585 COG0585, Uncharacterized conserved protein Function unknown 58584180 Pathogen - hypothetical protein XOO4557 1 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 58581723 Common - transposase XOO2100 32 None None None 58584216 Common - IS1478 transposase XOO4593 17 None None None 122879271 Common - hypothetical protein XOO3550 5 None None None 58580045 Pathogen - hypothetical protein XOO0422 2 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 58583846 Pathogen - transposase XOO4223 1 None None None 58583561 Common ydgJ oxidoreductase XOO3938 95 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 58583900 Pathogen - hypothetical protein XOO4277 1 None None None 58583454 Common ftsI penicillin-binding protein 3 XOO3831 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 58583678 Common - putative transposase XOO4055 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879220 Common tsr chemotaxis protein XOO2842 156 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 58583714 Common - putative transposase XOO4091 46 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 121632139 Pathogen - hypothetical protein YXOOp17 1 None None None 58581302 Common exsB transcriptional regulator XOO1679 176 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 58582740 Pathogen tnpX1 IS1113 transposase XOO3117 1 None None None 58582089 Common phoU phosphate regulon transcriptional regulator XOO2466 197 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 121632096 Pathogen - putative ISXo8 transposase XOO4798 1 None None None 58582162 Common - hypothetical protein XOO2539 162 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 58582857 Common nuoC NADH dehydrogenase subunit C XOO3234 166 COG0852 NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit Energy production and conversion 58580807 Common - Long-chain acyl-CoA synthetase (AMP-forming) XOO1184 211 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 122879164 Common ppsA phosphoenolpyruvate synthase XOO2211 236 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 122879099 Common hup histone-like protein XOO1414 15 None None None 58583199 Common rplP 50S ribosomal protein L16 XOO3576 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 58582986 Pathogen xrvA virulence regulator XOO3363 2 COG2916 Hns, DNA-binding protein H-NS General function prediction only 58583546 Common lacZ truncated beta-galactosidase XOO3923 72 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 58580314 Pathogen - hypothetical protein XOO0691 1 None None None 58583415 Common appA phosphoanhydride phosphohydrolase XOO3792 17 None None None 58579921 Common - putative ISXo8 transposase XOO0298 10 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 122879092 Common ybaL cation:proton antiporter XOO1362 197 COG4651 RosB, Kef-type K+ transport system, predicted NAD-binding component Inorganic ion transport and metabolism 58583961 Common metF 5,10-methylenetetrahydrofolate reductase XOO4338 40 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 58582502 Common rpfI regulatory protein XOO2879 8 None None None 58580801 Common - hypothetical protein XOO1178 176 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 58582661 Common - hypothetical protein XOO3038 46 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 58580974 Common cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase XOO1351 118 COG2038 CobT, NaMN:DMB phosphoribosyltransferase Coenzyme metabolism 58582340 Common apt adenine phosphoribosyltransferase XOO2717 165 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 58581690 Pathogen - hypothetical protein XOO2067 2 COG3122 COG3122, Uncharacterized protein conserved in bacteria Function unknown 58583630 Common hemC porphobilinogen deaminase XOO4007 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 58581347 Common - DNA-binding related protein XOO1724 142 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 58581660 Pathogen - outer membrane component of multidrug efflux pump XOO2037 1 None None None 58583763 Common ctaD cytochrome C oxidase subunit I XOO4140 174 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 58580862 Pathogen avrXa3 avirulence protein XOO1239 2 None None None 58582349 Common htpX heat shock protein HtpX XOO2726 193 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 58583055 Common - IS1478 transposase XOO3432 17 None None None 58582796 Common gumH GumH XOO3173 142 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 58580426 Common - hypothetical protein XOO0803 26 COG3218 COG3218, ABC-type uncharacterized transport system, auxiliary component General function prediction only 58579710 Pathogen hrpB2 HrpB2 XOO0087 3 None None None 58581783 Pathogen - hypothetical protein XOO2160 2 None None None 58580886 Common prnA tryptophan halogenase XOO1263 16 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 58582641 Common mexB multidrug efflux transporter XOO3018 184 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 58584173 Common xthA1 exodeoxyribonuclease III XOO4550 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 58581733 Common - putative transposase XOO2110 42 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581715 Common - IS1478 transposase XOO2092 27 None None None 58581244 Common rpmA 50S ribosomal protein L27 XOO1621 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 58584070 Common - oxidoreductase XOO4447 88 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 58579942 Common - putative transposase XOO0319 44 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583082 Common - hypothetical protein XOO3459 11 COG3668 ParE, Plasmid stabilization system protein General function prediction only 58581323 Common - phage-related baseplate assembly protein XOO1700 37 COG3948 COG3948, Phage-related baseplate assembly protein General function prediction only 58581277 Common - hypothetical protein XOO1654 54 COG2331 COG2331, Uncharacterized protein conserved in bacteria Function unknown 58581300 Common - possible transposase XOO1677 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580245 Common - IS1404 transposase XOO0622 20 None None None 58584057 Common - putative transposase XOO4434 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 121632080 Common - IS1404 transposase XOO4777 61 None None None 58582753 Common - hypothetical protein XOO3130 2 None None None 122879246 Common uvrB excinuclease ABC subunit B XOO3193 232 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 122879115 Common - hypothetical protein XOO1599 9 None None None 122879156 Common - hypothetical protein XOO2047 2 None None None 58580838 Common - putative transposase XOO1215 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582277 Common strW transport protein XOO2654 241 COG4988 CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 58582492 Common rpfF enoyl-CoA hydratase XOO2869 146 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 58582850 Common nuoI NADH dehydrogenase subunit I XOO3227 186 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 58582773 Common - hypothetical protein XOO3150 42 COG3897 COG3897, Predicted methyltransferase General function prediction only 58582884 Common aroC chorismate synthase XOO3261 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 122879314 Common cycA D-alanine/D-serine/glycine permease XOO4034 88 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 58583706 Common - hypothetical protein XOO4083 3 None None None 58581939 Common pgl 6-phosphogluconolactonase XOO2316 111 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 58582207 Pathogen - hypothetical protein XOO2584 1 None None None 58582712 Common tnp transposase XOO3089 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58580452 Common - hypothetical protein XOO0829 2 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 58581467 Common paaF enoyl-CoA hydratase XOO1844 183 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 58581272 Common - IS1404 transposase XOO1649 80 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58584118 Common - hypothetical protein XOO4495 50 COG0429 COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 58581631 Common - IS1404 transposase XOO2008 16 None None None 58581131 Common - IS1478 transposase XOO1508 28 None None None 58582645 Pathogen - putative type III effector HolPsyAE XOO3022 3 None None None 58581228 Common - hypothetical protein XOO1605 17 None None None 58581357 Common pqqC pyrroloquinoline quinone biosynthesis protein PqqC XOO1734 36 COG5424 COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C Coenzyme metabolism 58580222 Common - site-specific recombinase, phage integrase family XOO0599 137 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 58580271 Pathogen - hypothetical protein XOO0648 1 None None None 58579824 Common - transposase XOO0201 3 None None None 58582154 Common - hypothetical protein XOO2531 51 COG2976 COG2976, Uncharacterized protein conserved in bacteria Function unknown 58582621 Common - hypothetical protein XOO2998 23 None None None 58581513 Pathogen - ISxac1 transposase XOO1890 1 None None None 58582159 Common - transcriptional regulator tetR family XOO2536 82 COG1309 AcrR, Transcriptional regulator Transcription 58580602 Common dsbB disulfide bond formation protein B XOO0979 38 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 122879338 Common rho transcription termination factor Rho XOO4303 203 COG1158 Rho, Transcription termination factor Transcription 58583467 Common kdpC potassium-transporting ATPase subunit C XOO3844 95 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 58580168 Pathogen - transposase XOO0545 1 None None None 58580018 Common - possible transposase XOO0395 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583814 Common - hypothetical protein XOO4191 23 COG5383 COG5383, Uncharacterized protein conserved in bacteria Function unknown 58583796 Common - ISxac1 transposase XOO4173 14 None None None 58580101 Common - IS1404 transposase XOO0478 103 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580860 Common avrB6 avirulence protein XOO1237 8 None None None 58584254 Common fecA TonB-dependent receptor XOO4631 6 None None None 58584092 Common recD exodeoxyribonuclease V alpha chain XOO4469 117 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 58580793 Common - hypothetical protein XOO1170 88 COG1240 ChlD, Mg-chelatase subunit ChlD Coenzyme metabolism 58580951 Common rplS 50S ribosomal protein L19 XOO1328 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 58582290 Common - hypothetical protein XOO2667 5 COG2350 COG2350, Uncharacterized protein conserved in bacteria Function unknown 58582345 Common - hypothetical protein XOO2722 91 COG1671 COG1671, Uncharacterized protein conserved in bacteria Function unknown 58583835 Common - hypothetical protein XOO4212 10 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 121632024 Pathogen - hypothetical protein XOO4709 1 None None None 58580852 Common az1 electron transfer protein azurin I XOO1229 19 COG3241 COG3241, Azurin Energy production and conversion 58581049 Common - Holliday junction resolvase-like protein XOO1426 64 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 58580490 Common - hypothetical protein XOO0867 99 COG1518 COG1518, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 58580873 Common - hypothetical protein XOO1250 27 COG3766 COG3766, Predicted membrane protein Function unknown 58580678 Common - hypothetical protein XOO1055 8 None None None 58582426 Common - transcriptional regulator tetR/acrR family XOO2803 16 COG1309 AcrR, Transcriptional regulator Transcription 58580074 Common - hydrolase XOO0451 106 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 58580450 Common - IS1404 transposase XOO0827 119 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582966 Common - putative ISXo8 transposase XOO3343 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583686 Pathogen - hypothetical protein XOO4063 1 None None None 58581505 Common - serine protease XOO1882 145 COG4625 COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain Function unknown 58583564 Pathogen - hypothetical protein XOO3941 1 COG3134 COG3134, Predicted outer membrane lipoprotein Function unknown 58580746 Common thiE thiamine-phosphate pyrophosphorylase XOO1123 64 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 58582549 Common - bacterioferritin comigratory protein XOO2926 224 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 122879211 Common - ATP-binding protein XOO2767 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 58581069 Common - hypothetical protein XOO1446 25 COG2879 COG2879, Uncharacterized small protein Function unknown 58582615 Common - glycosyl transferase XOO2992 181 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 58582485 Common acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase XOO2862 217 COG1049 AcnB, Aconitase B Energy production and conversion 58582286 Common cynX MFS transporter XOO2663 84 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 121632101 Pathogen - hypothetical protein XOO4808 1 None None None 58581865 Common metL aspartokinase; homoserine dehydrogenase I XOO2242 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 58580966 Common - IS1478 transposase XOO1343 20 None None None 58581801 Common - hypothetical protein XOO2178 7 None None None 58583220 Common nusG transcription antitermination protein NusG XOO3597 214 COG0250 NusG, Transcription antiterminator Transcription 58583540 Common glmS glucosamine-fructose-6-phosphate aminotransferase XOO3917 230 COG2222 AgaS, Predicted phosphosugar isomerases Cell envelope biogenesis, outer membrane 58581958 Common gst glutathione S-transferase XOO2335 31 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 58582724 Pathogen nasT histidine kinase/response regulator hybrid protein XOO3101 1 COG3707 AmiR, Response regulator with putative antiterminator output domain Signal transduction mechanisms 58580875 Common - synthetase/amidase XOO1252 53 COG0754 Gsp, Glutathionylspermidine synthase Amino acid transport and metabolism 58582608 Common - hexosyltransferase XOO2985 4 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 58581006 Common - IS1478 transposase XOO1383 18 None None None 58581499 Common - mRNA 3'-end processing factor XOO1876 70 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 58582006 Pathogen - hypothetical protein XOO2383 2 None None None 58581835 Common - hypothetical protein XOO2212 113 COG1806 COG1806, Uncharacterized protein conserved in bacteria Function unknown 58581159 Common yadQ chloride channel XOO1536 147 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 58583062 Common dnaE2 DNA polymerase III alpha chain XOO3439 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 58583543 Common - transcriptional regulator gntR family XOO3920 129 COG2188 PhnF, Transcriptional regulators Transcription 58580311 Common motA flagellar motor protein MotA XOO0688 110 COG1291 MotA, Flagellar motor component Cell motility and secretion 58580710 Common - hypothetical protein XOO1087 30 COG2110 COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 General function prediction only 122879294 Common ribE riboflavin synthase subunit alpha XOO3854 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 58579915 Common aphB phytochrome-like protein XOO0292 33 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 121632016 Pathogen - hypothetical protein XOO4701 1 None None None 122879117 Common - hypothetical protein XOO1610 11 None None None 58581681 Pathogen - hypothetical protein XOO2058 2 None None None 58583290 Common phoR two-component system sensor protein XOO3667 218 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 58579687 Common - putative transposase XOO0064 42 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583287 Common grxC glutaredoxin XOO3664 117 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 58582777 Common - hypothetical protein XOO3154 22 None None None 58581914 Common pgsA CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase XOO2291 204 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 58580413 Common etfA electron transfer flavoprotein alpha subunit XOO0790 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 122879119 Common - hypothetical protein XOO1633 55 COG3975 COG3975, Predicted protease with the C-terminal PDZ domain General function prediction only 122879258 Common - alanyl dipeptidyl peptidase XOO3433 137 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 58580085 Common - hypothetical protein XOO0462 24 None None None 58581335 Common - phage-related major capsid protein XOO1712 22 None None None 58582164 Common - hypothetical protein XOO2541 13 COG1993 COG1993, Uncharacterized conserved protein Function unknown 58582573 Common ftsJ cell division protein XOO2950 139 COG0293 FtsJ, 23S rRNA methylase Translation, ribosomal structure and biogenesis 58583404 Pathogen - hypothetical protein XOO3781 1 COG4256 HemP, Hemin uptake protein Inorganic ion transport and metabolism 58580670 Common - probable vgr-related protein XOO1047 51 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 58580702 Common - hypothetical protein XOO1079 3 None None None 58580891 Common ahyR transcriptional regulator AhyR/AsaR family XOO1268 69 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 58582872 Common mrsA phosphohexose mutase XOO3249 240 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 58579945 Common - putative transposase XOO0322 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58581646 Common smpB SsrA-binding protein XOO2023 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 58584006 Common - hypothetical protein XOO4383 10 None None None 58579773 Common - putative ISXo8 transposase XOO0150 28 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580318 Common - hypothetical protein XOO0695 14 None None None 58580004 Common yadG ABC transporter ATP-binding protein XOO0381 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 58581817 Common guaB inositol-5-monophosphate dehydrogenase XOO2194 240 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 58582794 Common gumJ GumJ XOO3171 82 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 58583066 Common - hypothetical protein XOO3443 21 None None None 58584022 Common glyQ glycyl-tRNA synthetase subunit alpha XOO4399 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 58581279 Common aspS aspartyl-tRNA synthetase XOO1656 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 58582673 Common - hypothetical protein XOO3050 24 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 58582070 Common sseA thiosulfate sulfurtransferase XOO2447 145 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 58583904 Common - transposase XOO4281 11 None None None 58580859 Common - hypothetical protein XOO1236 3 None None None 58581622 Common yjcP outer membrane efflux protein XOO1999 108 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 58582012 Common - putative sulfite oxidase subunit YedY XOO2389 126 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 58580419 Common xanB phosphomannose isomerase; GDP-mannose pyrophosphorylase XOO0796 164 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 58579629 Common - hypothetical protein XOO0006 124 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 58581221 Common - hypothetical protein XOO1598 180 COG1496 COG1496, Uncharacterized conserved protein Function unknown 58584080 Pathogen - hypothetical protein XOO4457 1 None None None 58582518 Common avtA valine-pyruvate aminotransferase XOO2895 218 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 58579804 Common - Transposase and inactivated derivatives, IS30 family XOO0181 7 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58583867 Pathogen yapH YapH protein XOO4244 1 None None None 58580826 Common gapA glyceraldehyde-3-phosphate dehydrogenase XOO1203 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 58580007 Common - hypothetical protein XOO0384 87 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 58583171 Pathogen - hypothetical protein XOO3548 3 None None None 58580585 Common pfkA 6-phosphofructokinase XOO0962 102 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 58580697 Common arsC arsenate reductase XOO1074 55 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 58581071 Common - pirin XOO1448 148 COG1741 COG1741, Pirin-related protein General function prediction only 58582238 Common - GGDEF family protein XOO2615 176 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 58583350 Common - transcriptional regulator marR family XOO3727 14 COG1846 MarR, Transcriptional regulators Transcription 121632092 Pathogen - hypothetical protein XOO4794 2 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 58582976 Common - transposase XOO3353 7 None None None 58582201 Common flgJ peptidoglycan hydrolase XOO2578 68 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 58583130 Common - hypothetical protein XOO3507 14 COG4253 COG4253, Uncharacterized protein conserved in bacteria Function unknown 58583734 Common - possible transposase XOO4111 62 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582482 Common cheB chemotaxis-specific methylesterase XOO2859 211 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 58580400 Common cysB cystathionine beta-synthase XOO0777 214 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 58581524 Common araJ MFS transporter XOO1901 163 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58584062 Pathogen - hypothetical protein XOO4439 1 None None None 58582554 Common - hypothetical protein XOO2931 22 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 58580929 Common - putative transposase XOO1306 21 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583693 Common hmgA homogentisate 1,2-dioxygenase XOO4070 48 COG3508 HmgA, Homogentisate 1,2-dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 58582332 Common - phosphate-binding protein XOO2709 34 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 58582397 Common gabD succinate-semialdehyde dehydrogenase XOO2774 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 58581654 Common dnaK molecular chaperone DnaK XOO2031 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 58580843 Common - hydrolase XOO1220 10 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 58581982 Pathogen - hypothetical protein XOO2359 1 COG2161 StbD, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 58580302 Common - hypothetical protein XOO0679 4 None None None 121632072 Pathogen - hypothetical protein XOO4764 1 None None None 58582475 Common - putative transposase XOO2852 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582244 Common fliA RNA polymerase sigma factor FliA XOO2621 155 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 121632085 Common - hypothetical protein XOO4784 4 COG1742 COG1742, Uncharacterized conserved protein Function unknown 58583488 Common sll7047 hypothetical protein XOO3865 5 None None None 58580993 Common bla beta lactamase XOO1370 57 COG2367 PenP, Beta-lactamase class A Defense mechanisms 122879106 Common nfi endonuclease V XOO1459 75 COG1515 Nfi, Deoxyinosine 3'endonuclease (endonuclease V) DNA replication, recombination, and repair 58579759 Common - transposase XOO0136 5 None None None 58582476 Common - putative transposase XOO2853 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583772 Common bfr bacterioferritin XOO4149 103 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 58583883 Common - hypothetical protein XOO4260 12 None None None 58584172 Common - transcriptional regulator XOO4549 38 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 58581797 Common traB pheromone shutdown protein XOO2174 38 COG1916 COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) Function unknown 58581326 Common - phage-related tail protein XOO1703 17 None None None 122879133 Pathogen - hypothetical protein XOO1768 2 COG4987 CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 58579734 Common - hypothetical protein XOO0111 176 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 122879047 Common tnpX1 IS1113 transposase XOO0787 86 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879285 Common - hypothetical protein XOO3720 71 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 58579838 Common - hypothetical protein XOO0215 14 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 58583473 Common thiL thiamine monophosphate kinase XOO3850 177 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 58581103 Common - cysteine protease XOO1480 15 COG4870 COG4870, Cysteine protease Posttranslational modification, protein turnover, chaperones 58582234 Common fliP flagellar biosynthesis protein FliP XOO2611 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 58583786 Common trpG anthranilate synthase component II XOO4163 235 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 58582460 Common - transposase XOO2837 65 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58580110 Pathogen - hydrolase XOO0487 1 COG2267 PldB, Lysophospholipase Lipid metabolism 58579889 Common - hypothetical protein XOO0266 3 None None None 58581363 Pathogen - hypothetical protein XOO1740 2 None None None 58580268 Pathogen cheR methyltransferase XOO0645 1 None None None 58579747 Common - putative ISXo8 transposase XOO0124 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583185 Common secY preprotein translocase subunit SecY XOO3562 244 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 58581206 Common coaE dephospho-CoA kinase XOO1583 201 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 58583612 Common pepN aminopeptidase XOO3989 166 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 58581881 Common hisB imidazole glycerol-phosphate dehydratase/histidinol phosphatase XOO2258 217 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 58580469 Common - protease XOO0846 18 None None None 58581977 Common - hypothetical protein XOO2354 172 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 58581762 Common - hypothetical protein XOO2139 98 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 58582031 Pathogen - hypothetical protein XOO2408 2 None None None 58583480 Common - acetyltransferase XOO3857 18 COG3153 COG3153, Predicted acetyltransferase General function prediction only 58579920 Common - transposase XOO0297 17 None None None 58580287 Common - oxidoreductase XOO0664 201 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 58581481 Common - hypothetical protein XOO1858 131 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 58581693 Common fucP glucose-galactose transporter XOO2070 53 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 58581887 Common - hypothetical 125K protein XOO2264 11 None None None 122879195 Common - hypothetical protein XOO2509 211 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 58582063 Common - ABC transporter ATP-binding protein XOO2440 12 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 58580576 Common - hypothetical protein XOO0953 3 None None None 58580907 Common rpoN RNA polymerase factor sigma-54 XOO1284 145 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 122879040 Common - nucleotide-binding protein XOO0711 107 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 122879004 Common egl cellulase XOO0281 19 COG2730 BglC, Endoglucanase Carbohydrate transport and metabolism 58580836 Common - serine/threonine protein kinase XOO1213 8 COG0478 COG0478, RIO-like serine/threonine protein kinase fused to N-terminal HTH domain Signal transduction mechanisms 58581338 Common - phage-related capsid packaging protein XOO1715 24 COG5518 COG5518, Bacteriophage capsid portal protein General function prediction only 58581168 Common - hypothetical protein XOO1545 37 COG2501 COG2501, Uncharacterized conserved protein Function unknown 122879122 Common ycaD transmembrane transport protein XOO1653 63 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58582786 Common - putative transposase XOO3163 20 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582212 Common fleQ transcriptional regulator XOO2589 171 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 58583324 Common - IS1404 transposase XOO3701 82 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 122879060 Common - membrane protein XOO0976 49 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 58581035 Pathogen - hypothetical protein XOO1412 1 None None None 58582026 Common - IS1404 transposase XOO2403 58 None None None 58584162 Common - oxidoreductase XOO4539 93 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 58584169 Common - hypothetical protein XOO4546 20 None None None 58583388 Common ftsE ABC transporter ATP-binding protein XOO3765 249 COG4181 COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 58582401 Common oprN outer membrane protein OprN precursor XOO2778 106 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 58582635 Common - hypothetical protein XOO3012 3 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 58581850 Common regR two-component system regulatory protein XOO2227 159 COG4567 COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Signal transduction mechanisms / Transcription 161898956 Common dkgB 2,5-diketo-D-gluconate reductase B XOO4527 186 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 58582451 Common sodM superoxidase dismutase XOO2828 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 58582430 Common - transposase XOO2807 31 None None None 58583619 Common - hypothetical protein XOO3996 43 COG3159 COG3159, Uncharacterized protein conserved in bacteria Function unknown 58580654 Common - IS1478 transposase XOO1031 16 None None None 122879370 Common - hypothetical protein XOO4581 8 None None None 58581983 Common pgi glucose-6-phosphate isomerase XOO2360 195 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 58582739 Pathogen btuB TonB-dependent receptor XOO3116 1 None None None 58582765 Common - transcriptional regulator XOO3142 140 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 58582890 Common - hypothetical protein XOO3267 29 COG0433 COG0433, Predicted ATPase General function prediction only 58581056 Common lysA bifunctional aspartate kinase/diaminopimelate decarboxylase protein XOO1433 236 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 58583895 Common - proteinase XOO4272 2 COG4934 COG4934, Predicted protease Posttranslational modification, protein turnover, chaperones 58583108 Common - hypothetical protein XOO3485 46 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 58580527 Common - putative ISXo8 transposase XOO0904 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58581473 Pathogen - regulatory protein XOO1850 2 COG3073 RseA, Negative regulator of sigma E activity Signal transduction mechanisms 58582381 Common sspB ClpXP protease specificity-enhancing factor XOO2758 64 COG2969 SspB, Stringent starvation protein B General function prediction only 122879275 Common rpsL 30S ribosomal protein S12 XOO3589 223 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 58582899 Pathogen - hypothetical protein XOO3276 1 None None None 122879221 Common tsr chemotaxis protein XOO2848 154 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 58582591 Pathogen - hypothetical protein XOO2968 1 None None None 58582304 Common - similar to interphotoreceptor retinoid-binding protein XOO2681 4 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 58580952 Common - hypothetical protein XOO1329 168 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 58579873 Common - OmpA-related protein XOO0250 24 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58584141 Common - hypothetical protein XOO4518 119 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 58579752 Common - putative ISXo8 transposase XOO0129 13 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 122879290 Common - putative ISXo8 transposase XOO3794 35 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 121632129 Pathogen - hypothetical protein XOO4903 1 None None None 58582879 Common - hypothetical protein XOO3256 29 COG3324 COG3324, Predicted enzyme related to lactoylglutathione lyase General function prediction only 58579854 Common - hypothetical protein XOO0231 17 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 122879154 Common - hypothetical protein XOO2040 134 COG1739 COG1739, Uncharacterized conserved protein Function unknown 58582452 Common - TonB-dependent siderophore receptor, putative XOO2829 3 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 58582559 Common - Isopentenyl transferase XOO2936 6 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 58580285 Common - metallopeptidase XOO0662 63 COG3590 PepO, Predicted metalloendopeptidase Posttranslational modification, protein turnover, chaperones 58583337 Common reut4275 Transposase and inactivated derivatives, IS30 family XOO3714 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 121632035 Pathogen - hypothetical protein XOO4724 3 COG3662 COG3662, Uncharacterized protein conserved in bacteria Function unknown 58581153 Common fhuA TonB-dependent receptor XOO1530 76 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58582920 Common mesJ cell cycle protein XOO3297 204 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 122879144 Common cfaA cyclopropane-fatty-acyl-phospholipid synthase XOO1914 124 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 58580978 Common iucA iron transporter XOO1355 43 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 58581311 Common - hypothetical protein XOO1688 17 COG1396 HipB, Predicted transcriptional regulators Transcription 58582181 Common mcp chemotaxis protein XOO2558 51 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 122878990 Common - IS1478 transposase XOO0187 30 None None None 121632120 Pathogen - hypothetical protein XOO4888 1 None None None 58582868 Common - hypothetical protein XOO3245 10 None None None 58580133 Common ampG signal transducer XOO0510 108 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 58581092 Common mcp chemotaxis protein XOO1469 137 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 58584121 Common cls cardiolipin synthase XOO4498 57 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 58582730 Common - hypothetical protein XOO3107 4 COG4095 COG4095, Uncharacterized conserved protein Function unknown 122878999 Common ilvA threonine dehydratase XOO0228 194 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 58581826 Pathogen - hypothetical protein XOO2203 1 None None None 161898973 Common - hypothetical protein XOO3221 173 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 58581902 Common - avirulence protein XOO2279 12 None None None 58583576 Common lipB lipoyltransferase XOO3953 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 58581350 Common fepA TonB-dependent receptor XOO1727 26 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58583021 Common cysJ NADPH-sulfite reductase flavoprotein subunit XOO3398 73 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 58581418 Common gcvH glycine cleavage system protein H XOO1795 185 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 122878988 Common gltB glutamate synthase subunit alpha XOO0177 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 58580409 Pathogen - IS1478 transposase XOO0786 1 None None None 58580688 Common - hypothetical protein XOO1065 192 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 58580351 Common atpF F0F1 ATP synthase subunit B XOO0728 136 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 58582005 Common - putative transposase XOO2382 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58581888 Common - pectate lyase L precursor XOO2265 7 None None None 58583973 Common - transcriptional regulator lysR family XOO4350 189 COG0583 LysR, Transcriptional regulator Transcription 58580390 Common bioD dithiobiotin synthetase XOO0767 66 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 58582441 Common - hypothetical protein XOO2818 47 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 58579772 Common - IS1479 transposase XOO0149 24 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58583197 Common rpsQ 30S ribosomal protein S17 XOO3574 235 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 58581662 Common draA ABC transporter ATP-binding protein XOO2039 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 161898964 Common lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase XOO3821 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 58582383 Common petC ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit XOO2760 71 COG2857 CYT1, Cytochrome c1 Energy production and conversion 58581488 Common - hypothetical protein XOO1865 27 COG3380 COG3380, Predicted NAD/FAD-dependent oxidoreductase General function prediction only 58582658 Common - serine/threonine kinase XOO3035 143 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 58582704 Common - hypothetical protein XOO3081 83 COG2081 COG2081, Predicted flavoproteins General function prediction only 58580580 Common - H+ translocating pyrophosphate synthase XOO0957 45 COG3808 OVP1, Inorganic pyrophosphatase Energy production and conversion 58583508 Common - hypothetical protein XOO3885 22 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 58583816 Common - transposase XOO4193 31 None None None 122879075 Common cirA TonB-dependent receptor XOO1180 30 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58581760 Common - enolase-phosphatase XOO2137 31 COG4229 COG4229, Predicted enolase-phosphatase Energy production and conversion 58583632 Common algZ two-component system sensor protein XOO4009 102 COG2972 COG2972, Predicted signal transduction protein with a C-terminal ATPase domain Signal transduction mechanisms 58583370 Common pdxA 4-hydroxythreonine-4-phosphate dehydrogenase XOO3747 159 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 58581792 Common - hypothetical protein XOO2169 22 COG5368 COG5368, Uncharacterized protein conserved in bacteria Function unknown 58581695 Common - hypothetical protein XOO2072 49 COG2942 COG2942, N-acyl-D-glucosamine 2-epimerase Carbohydrate transport and metabolism 58580378 Common copB copper resistance protein B precursor XOO0755 42 COG3667 PcoB, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 58579674 Pathogen - hypothetical protein XOO0051 1 None None None 121632127 Common - hypothetical protein YXOOp11 14 None None None 58582625 Pathogen - hypothetical protein XOO3002 2 None None None 58582121 Pathogen - hypothetical protein XOO2498 1 None None None 122879230 Common dapA dihydrodipicolinate synthase XOO2923 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 58583448 Common murC UDP-N-acetylmuramate--L-alanine ligase XOO3825 209 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 122879036 Common wrbA tryptophan repressor binding protein XOO0665 110 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 58580135 Common anmK anhydro-N-acetylmuramic acid kinase XOO0512 120 COG2377 COG2377, Predicted molecular chaperone distantly related to HSP70-fold metalloproteases Posttranslational modification, protein turnover, chaperones 58581804 Common ihfB integration host factor subunit beta XOO2181 203 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 58581928 Common lolC lipoprotein releasing system transmembrane protein XOO2305 203 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 58583486 Common yjjK putative ABC transporter ATP-binding protein XOO3863 247 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 58583385 Common colS two-component system sensor protein XOO3762 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58579972 Common - hypothetical protein XOO0349 37 COG3837 COG3837, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 121632075 Common - putative ISXo8 transposase XOO4769 12 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58581679 Common - Transposase and inactivated derivatives, IS30 family XOO2056 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 58582041 Common asnC asparaginyl-tRNA synthetase XOO2418 212 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 58583306 Common fecA TonB-dependent receptor XOO3683 52 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58581436 Pathogen - hypothetical protein XOO1813 1 None None None 121632057 Pathogen - hypothetical protein XOO4748 1 None None None 58580822 Common - putative ISXo8 transposase XOO1199 13 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58580340 Common ompW outer membrane protein XOO0717 63 COG3047 OmpW, Outer membrane protein W Cell envelope biogenesis, outer membrane 58583080 Common hsdM-1 type I restriction system adenine methylase XOO3457 160 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 58581186 Common acr acriflavin resistance protein XOO1563 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 58582611 Common - hypothetical protein XOO2988 46 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 58582874 Common trpA tryptophan synthase subunit alpha XOO3251 212 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 58580395 Common uptB maleylacetoacetate isomerase XOO0772 62 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 58581058 Common - hypothetical protein XOO1435 4 None None None 58583766 Common - possible transposase XOO4143 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583557 Common - histidine kinase-response regulator hybrid protein XOO3934 224 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 58583911 Common groEL chaperonin GroEL XOO4288 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 122879237 Common - serine protease XOO3004 126 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 58582209 Common - response regulator XOO2586 207 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 58579963 Common - hypothetical protein XOO0340 12 COG3254 COG3254, Uncharacterized conserved protein Function unknown 58581721 Common - putative transposase XOO2098 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583037 Common idgB indigoidine synthesis-like protein XOO3414 172 COG0546 Gph, Predicted phosphatases General function prediction only 58581404 Common nahA beta-hexosaminidase XOO1781 55 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 58583748 Common gcp O-sialoglycoprotein endopeptidase XOO4125 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 58581717 Common - putative ISXo8 transposase XOO2094 32 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58581321 Common - hypothetical protein XOO1698 21 COG4675 MdpB, Microcystin-dependent protein Function unknown 58581459 Pathogen - hypothetical protein XOO1836 1 None None None 58584085 Common - hypothetical protein XOO4462 6 None None None 58580258 Common ybdR Zn-dependent alcohol dehydrogenase XOO0635 166 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 161899009 Common rph ribonuclease PH XOO1143 185 COG0689 Rph, RNase PH Translation, ribosomal structure and biogenesis 58581175 Common - pseudouridylate synthase XOO1552 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 58580122 Common - hypothetical protein XOO0499 3 None None None 58581546 Common - hypothetical protein XOO1923 14 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 161898967 Common fusA elongation factor G XOO3588 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 122879112 Common - Transposase and inactivated derivatives XOO1566 57 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580250 Common - hypothetical protein XOO0627 9 None None None 122879124 Common - hypothetical protein XOO1658 18 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 58583752 Common - putative ISXo8 transposase XOO4129 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 122878977 Common yncD iron transporter XOO0017 114 COG4772 FecA, Outer membrane receptor for Fe3+-dicitrate Inorganic ion transport and metabolism 58582265 Common acrD transport protein XOO2642 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 58582356 Common amiC N-acetylmuramoyl-L-alanine amidase XOO2733 179 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 58583880 Common - IS1478 transposase XOO4257 28 None None None 58580711 Common - putative ISXo8 transposase XOO1088 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 122879248 Common trpB tryptophan synthase subunit beta XOO3252 226 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 58579666 Common - MutT-nudix family protein XOO0043 114 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 58582847 Common nuoL NADH dehydrogenase subunit L XOO3224 209 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 58583142 Common purT phosphoribosylglycinamide formyltransferase 2 XOO3519 194 COG0027 PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Nucleotide transport and metabolism 58580368 Common ybjY ABC transporter permease XOO0745 121 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 58579719 Common hpa2 Hpa2 XOO0096 32 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 122879208 Common tnpX1 IS1113 transposase XOO2747 87 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 58583086 Common hsdM-2 type I restriction-modification system, M subunit XOO3463 161 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 58580813 Common blaI transcriptional regulator blaI family XOO1190 39 COG3682 COG3682, Predicted transcriptional regulator Transcription 58582496 Common prfB peptide chain release factor 2 XOO2873 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 58582295 Common argB acetylglutamate kinase XOO2672 207 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 58580610 Common - IS1404 transposase XOO0987 67 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582569 Common hfq RNA-binding protein Hfq XOO2946 127 COG1923 Hfq, Uncharacterized host factor I protein General function prediction only 58582148 Common - putative transposase XOO2525 14 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580949 Common rimM 16S rRNA-processing protein XOO1326 165 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 58580747 Common rubA rubredoxin XOO1124 111 COG1773 COG1773, Rubredoxin Energy production and conversion 58579678 Pathogen - hypothetical protein XOO0055 1 None None None 58582042 Pathogen - hypothetical protein XOO2419 1 None None None 122879281 Common rnk regulator of nucleoside diphosphate kinase XOO3648 66 COG0782 GreA, Transcription elongation factor Transcription 58582793 Common gumK glucuronosyltransferase GumK XOO3170 4 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 58583090 Common - hypothetical protein XOO3467 7 None None None 58581576 Common - hypothetical protein XOO1953 5 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 58582771 Common - IS1478 transposase XOO3148 25 None None None 122879069 Common aspC aminotransferase AlaT XOO1094 238 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 58580508 Common - hypothetical protein XOO0885 185 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 58580196 Common sppA protease IV XOO0573 190 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 58583155 Common minE cell division topological specificity factor MinE XOO3532 76 COG0851 MinE, Septum formation topological specificity factor Cell division and chromosome partitioning 58579809 Common - putative ISXo8 transposase XOO0186 34 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583708 Pathogen - hypothetical protein XOO4085 1 None None None 58583728 Common - putative transposase XOO4105 31 COG3257 GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization General function prediction only 58581212 Common pilB pilus biogenesis protein XOO1589 215 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 58583830 Pathogen - hypothetical protein XOO4207 1 None None None 58583285 Common - putative transposase XOO3662 43 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580972 Common btuR cob(I)alamin adenolsyltransferase XOO1349 136 COG2109 BtuR, ATP:corrinoid adenosyltransferase Coenzyme metabolism 58580347 Common - hypothetical protein XOO0724 3 COG3047 OmpW, Outer membrane protein W Cell envelope biogenesis, outer membrane 58582284 Common cydB cytochrome D ubiquinol oxidase subunit II XOO2661 113 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 58582259 Common - putative transposase XOO2636 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58581304 Pathogen - hypothetical protein XOO1681 2 None None None 58583716 Pathogen - hypothetical protein XOO4093 1 None None None 122879273 Common rpsM 30S ribosomal protein S13 XOO3561 215 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 122879166 Common - oxidoreductase XOO2223 93 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 58583026 Common fecA TonB-dependent receptor XOO3403 93 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 58584077 Common - hypothetical protein XOO4454 6 None None None 58581688 Common fkpA FKBP-type peptidyl-prolyl cis-trans isomerase; rotamase XOO2065 135 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 121632137 Pathogen - hypothetical protein YXOOp16 1 None None None 161899013 Common acpP acyl carrier protein XOO0882 183 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 58580424 Common etf-QO flavoprotein-ubiquinone oxidoreductase XOO0801 110 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 58580444 Common pel pectate lyase XOO0821 17 COG3866 PelB, Pectate lyase Carbohydrate transport and metabolism 58580690 Common - histidine triad protein homolog (HIT-like protein) XOO1067 214 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 58581014 Common - hypothetical protein XOO1391 158 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 58584123 Common - hypothetical protein XOO4500 75 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 58581710 Common - transposase XOO2087 6 None None None 58583207 Common rplC 50S ribosomal protein L3 XOO3584 246 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 58582504 Common - hypothetical protein XOO2881 4 None None None 58580904 Common ptsK HPr kinase/phosphorylase XOO1281 73 COG1493 HprK, Serine kinase of the HPr protein, regulates carbohydrate metabolism Signal transduction mechanisms 58582508 Common rpfE regulatory protein XOO2885 34 COG4255 COG4255, Uncharacterized protein conserved in bacteria Function unknown 58582859 Common nuoA NADH dehydrogenase subunit A XOO3236 162 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 58583057 Common - hypothetical protein XOO3434 8 None None None 58583947 Common - AMP-ligase XOO4324 97 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 58581602 Common - hypothetical protein XOO1979 22 COG5430 COG5430, Uncharacterized secreted protein Function unknown 58583125 Common - hypothetical protein XOO3502 8 COG4253 COG4253, Uncharacterized protein conserved in bacteria Function unknown 58579695 Common - IS1479 transposase XOO0072 28 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58582177 Common clpS ATP-dependent Clp protease adaptor protein ClpS XOO2554 120 COG2127 COG2127, Uncharacterized conserved protein Function unknown 58582946 Common - hypothetical protein XOO3323 12 COG3211 PhoX, Predicted phosphatase General function prediction only 58582347 Common - hypothetical protein XOO2724 141 COG2081 COG2081, Predicted flavoproteins General function prediction only 121632144 Pathogen - hypothetical protein XOO4953 1 None None None 58581756 Common - hypothetical protein XOO2133 9 COG1409 Icc, Predicted phosphohydrolases General function prediction only 58583505 Common cycA cytochrome C4 XOO3882 58 COG2863 COG2863, Cytochrome c553 Energy production and conversion 58583885 Pathogen - hypothetical protein XOO4262 2 None None None 58580192 Pathogen - hypothetical protein XOO0569 2 None None None 58580884 Common - hypothetical protein XOO1261 15 None None None 58582643 Common - hypothetical protein XOO3020 9 None None None 58582202 Common flgK flagellar hook-associated protein FlgK XOO2579 118 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 58582992 Common - putative transposase XOO3369 24 None None None 58584017 Common - ATPase XOO4394 101 COG1485 COG1485, Predicted ATPase General function prediction only 58580212 Common - hypothetical protein XOO0589 14 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 122879366 Common fldA FldA XOO4563 55 COG2828 COG2828, Uncharacterized protein conserved in bacteria Function unknown 58581372 Common pilJ pilus biogenesis protein XOO1749 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 122879097 Common tnpX1 IS1113 transposase XOO1386 87 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 58582886 Common - hypothetical protein XOO3263 98 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 58582845 Common nuoN NADH dehydrogenase subunit N XOO3222 210 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 58580699 Common celS cellulase S XOO1076 6 None None None 58582918 Common gltT glutamate symport protein XOO3295 161 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 58579951 Pathogen aroD 3-dehydroquinate dehydratase XOO0328 1 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 58581878 Common hisG ATP phosphoribosyltransferase XOO2255 206 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 58580499 Common maf Maf-like protein XOO0876 182 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 58581469 Common mmsB 3-hydroxyisobutirate dehydrogenase XOO1846 163 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 121632082 Pathogen - hypothetical protein XOO4779 1 None None None 58580389 Common - hypothetical protein XOO0766 82 COG1956 COG1956, GAF domain-containing protein Signal transduction mechanisms 58583673 Common - lipid kinase XOO4050 86 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 58579712 Pathogen hrpB4 HrpB4 XOO0089 1 None None None 58582828 Common - hypothetical protein XOO3205 154 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 58581853 Common - phosphatidylglycerophosphatase B-related protein XOO2230 111 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 58582751 Common - hypothetical protein XOO3128 3 None None None 58582194 Common flgD flagellar basal body rod modification protein XOO2571 104 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 58579728 Pathogen - hypothetical protein XOO0105 1 None None None 58581270 Common - putative ISXo8 transposase XOO1647 14 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 58583456 Common mraW S-adenosyl-methyltransferase MraW XOO3833 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 58583432 Common - hypothetical protein XOO3809 5 None None None 161898987 Common lolA outer-membrane lipoprotein carrier protein XOO2544 82 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 58581508 Pathogen - hypothetical protein XOO1885 1 None None None 58581703 Common vacB RNase R XOO2080 198 COG0557 VacB, Exoribonuclease R Transcription 58581253 Common cyoB cytochrome O ubiquinol oxidase subunit I XOO1630 162 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 58581365 Common - hypothetical protein XOO1742 167 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 122879082 Common kpsF polysialic acid capsule expression protein XOO1289 184 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 58580322 Pathogen - hypothetical protein XOO0699 1 None None None 122879021 Common - hypothetical protein XOO0471 3 None None None 58581595 Common uppS undecaprenyl pyrophosphate synthetase XOO1972 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 58584090 Common vapI virulence associated protein XOO4467 85 COG3093 VapI, Plasmid maintenance system antidote protein General function prediction only 58582082 Common - possible transposase XOO2459 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580119 Common dfp bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase XOO0496 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 121632098 Pathogen - hypothetical protein XOO4801 1 None None None 58582168 Common - hypothetical protein XOO2545 26 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 58583235 Pathogen - hypothetical protein XOO3612 2 None None None 58581962 Common gpo glutathione peroxidase-like protein XOO2339 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 58579814 Common - xylosidase; arabinosidase XOO0191 5 None None None 122879252 Common - hypothetical protein XOO3339 7 COG2155 COG2155, Uncharacterized conserved protein Function unknown 58583979 Common - Predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily) XOO4356 25 None None None 58582213 Common vioA nucleotide sugar transaminase XOO2590 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 122879349 Common - probable TonB-dependent receptor XOO4396 113 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 58579802 Common - ISxac1 transposase XOO0179 13 None None None 122879090 Common - hypothetical protein XOO1357 32 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 122879268 Common - hypothetical protein XOO3520 35 COG4260 COG4260, Putative virion core protein (lumpy skin disease virus) Function unknown 58580915 Common - hypothetical protein XOO1292 10 None None None 58583918 Common - hypothetical protein XOO4295 115 COG2860 COG2860, Predicted membrane protein Function unknown 58581181 Common baeS two-component system sensor protein XOO1558 216 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 58583823 Common poxB pyruvate dehydrogenase XOO4200 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 58583217 Common rplA 50S ribosomal protein L1 XOO3594 243 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 58580382 Common prlC oligopeptidase A XOO0759 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 58583438 Pathogen - hypothetical protein XOO3815 1 None None None 58583562 Common gndA 6-phosphogluconate dehydrogenase-like protein XOO3939 183 COG1023 Gnd, Predicted 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 58582687 Common - putative transposase XOO3064 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 58580831 Common colR two-component system regulatory protein XOO1208 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 161898980 Common carB carbamoyl phosphate synthase large subunit XOO2887 237 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 58582525 Common - hypothetical protein XOO2902 61 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 58580759 Common - possible transposase XOO1136 65 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 58580564 Common leuA 2-isopropylmalate synthase XOO0941 211 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 58581232 Common - hypothetical protein XOO1609 22 None None None 58584155 Pathogen - hypothetical protein XOO4532 2 None None None 58584042 Common aguA alpha-glucuronidase XOO4419 15 COG3661 AguA, Alpha-glucuronidase Carbohydrate transport and metabolism 122879357 Common - microcystin dependent protein XOO4476 35 COG4675 MdpB, Microcystin-dependent protein Function unknown 58580761 Common - hypothetical protein XOO1138 5 None None None 58579636 Pathogen - hypothetical protein XOO0013 1 None None None 58583053 Common - IS1595 transposase XOO3430 5 None None None 58581772 Common dsbE C-type cytochrome biogenesis protein/thioredoxin XOO2149 129 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 58581669 Common - hypothetical protein XOO2046 54 COG2850 COG2850, Uncharacterized conserved protein Function unknown 58580608 Common - IS1478 transposase XOO0985 18 None None None 58581268 Common - IS1404 transposase XOO1645 62 None None None 58583214 Common rpoB DNA-directed RNA polymerase subunit beta XOO3591 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 58582102 Common - site-specific recombinase XOO2479 30 None None None 122879014 Common poxF phenol hydroxylase XOO0382 163 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 58581333 Common - phage-related terminase XOO1710 17 None None None 122879305 Pathogen - hypothetical protein XOO3965 2 None None None 58583839 Common cdh NAD(P)H steroid dehydrogenase XOO4216 211 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 121632118 Pathogen - hypothetical protein YXOOp04 1 None None None 58580026 Common - hypothetical protein XOO0403 17 None None None 58583957 Common - hypothetical protein XOO4334 24 None None None 58580043 Common - hypothetical protein XOO0420 4 None None None 58584034 Pathogen - hydrolase XOO4411 1 None None None 58580752 Common - hypothetical protein XOO1129 140 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 58580737 Common cit1 citrate carrier protein XOO1114 133 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 58582807 Common rplT 50S ribosomal protein L20 XOO3184 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 161898997 Common pyrH uridylate kinase XOO1974 243 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism