Borrelia garinii PBi chromosome linear, complete sequence NC_006156 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 51598515 Common - hypothetical protein BG0258 187 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 51598504 Common - hypothetical protein BG0246 3 COG1728 COG1728, Uncharacterized protein conserved in bacteria Function unknown 51598392 Common cmk cytidylate kinase BG0130 208 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 51598772 Common dnaK molecular chaperone DnaK BG0529 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 51598413 Common sodA superoxide dismutase BG0151 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 51598726 Common - hypothetical protein BG0483 80 COG1692 COG1692, Uncharacterized protein conserved in bacteria Function unknown 51598605 Common - fibronectin/fibrinogen-binding protein, putative BG0348 67 COG1293 COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP Transcription 51599083 Pathogen - lipoprotein, putative BG0857 1 None None None 51598733 Common rplD 50S ribosomal protein L4 BG0490 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 51598264 Pathogen - hypothetical protein BG0001 1 None None None 51598668 Common - hypothetical protein BG0414 3 COG0170 SEC59, Dolichol kinase Lipid metabolism 51598315 Pathogen secG preprotein translocase subunit SecG BG0053 1 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 51598643 Common rpsG 30S ribosomal protein S7 BG0387 217 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 51598719 Common ndk nucleoside-diphosphate kinase BG0476 229 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 51598720 Pathogen - hypothetical protein BG0477 1 None None None 51598296 Common smpB SsrA-binding protein BG0033 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 51598329 Common - hypothetical protein BG0067 72 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 51598449 Common rplT 50S ribosomal protein L20 BG0187 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 51598662 Pathogen - hypothetical protein BG0408 1 None None None 51598795 Common prs phosphoribosylpyrophosphate synthetase BG0554 242 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 51598488 Pathogen - hypothetical protein BG0230 1 None None None 51598685 Common - hypothetical protein BG0438 128 COG1739 COG1739, Uncharacterized conserved protein Function unknown 51598919 Pathogen - hypothetical protein BG0687 1 None None None 51598943 Common - mevalonate kinase, putative BG0711 10 COG1577 ERG12, Mevalonate kinase Lipid metabolism 51598467 Common - hypothetical protein BG0208 175 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 51598508 Common pepF oligoendopeptidase F BG0250 87 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 51598618 Common lgt prolipoprotein diacylglyceryl transferase BG0361 156 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 51598704 Pathogen - hypothetical protein BG0457 1 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 51598958 Common rnc ribonuclease III BG0727 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 51598276 Pathogen - hypothetical protein BG0013 1 None None None 51598598 Pathogen - hypothetical protein BG0341 2 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 51598531 Common flhA flagellar biosynthesis protein A BG0274 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 51598924 Common cheA-2 chemotaxis histidine kinase BG0692 150 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 51599009 Pathogen - lipoprotein, putative BG0781 1 None None None 51598883 Common fruA-2 PTS system, fructose-specific IIABC component BG0650 90 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 51598454 Common - hypothetical protein BG0192 236 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 51598376 Common rpsR 30S ribosomal protein S18 BG0114 215 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 51598842 Common pta phosphate acetyltransferase BG0602 162 COG0280 Pta, Phosphotransacetylase Energy production and conversion 51599060 Common - hypothetical protein BG0834 5 COG0795 COG0795, Predicted permeases General function prediction only 51598460 Pathogen - hypothetical protein BG0198 1 None None None 51598389 Pathogen - hypothetical protein BG0127 1 None None None 51598588 Common oppA-3 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein BG0331 207 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 51598832 Pathogen - hypothetical protein BG0592 2 None None None 51598743 Common rplN 50S ribosomal protein L14 BG0500 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 51599045 Common tmk thymidylate kinase BG0819 118 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 51598526 Pathogen - hypothetical protein BG0269 1 None None None 51598785 Common exoA exodeoxyribonuclease III BG0542 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 51598977 Common - hypothetical protein BG0747 78 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 51598479 Common pstB phosphate ABC transporter, ATP-binding protein BG0221 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 51598613 Common - transcription factor, putative BG0356 82 COG1329 COG1329, Transcriptional regulators, similar to M. xanthus CarD Transcription 51599030 Pathogen - hypothetical protein BG0803 1 COG2868 COG2868, Predicted ribosomal protein Translation, ribosomal structure and biogenesis 51598756 Common rpsK 30S ribosomal protein S11 BG0513 248 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 51598877 Pathogen - hypothetical protein BG0643 2 None None None 51598480 Common - gufA protein BG0222 92 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 51598420 Common alr alanine racemase BG0158 198 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 51598335 Common prfB peptide chain release factor 2 BG0073 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 51598289 Common folD methylenetetrahydrofolate dehydrogenase BG0026 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 51598358 Pathogen - hypothetical protein BG0096 1 None None None 51598584 Common - hypothetical protein BG0327 8 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 51598604 Pathogen - hypothetical protein BG0347 2 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 51598676 Common rrp-1 response regulatory protein BG0422 212 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 51598510 Common dedA dedA protein BG0252 17 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 51599040 Common ftsH cell division protein BG0814 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 51598405 Common - hypothetical protein BG0143 7 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 51598336 Pathogen - hypothetical protein BG0074 2 None None None 51598419 Pathogen - antigen S2-related protein BG0157 1 None None None 51598525 Pathogen - hypothetical protein BG0268 1 None None None 51598546 Pathogen flbB flagellar protein BG0289 2 COG3334 COG3334, Uncharacterized conserved protein Function unknown 51598302 Common - hypothetical protein BG0039 6 None None None 51598749 Common rplR 50S ribosomal protein L18 BG0506 213 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 51598561 Common ftsA cell division protein BG0304 178 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 51598908 Common secF preprotein translocase subunit SecF BG0676 202 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 51598964 Common rpoD RNA polymerase sigma factor RpoD BG0734 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 51598421 Common - hypothetical protein BG0159 4 None None None 51598653 Common rpmG 50S ribosomal protein L33 BG0398 138 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 51599021 Common rpoS RNA polymerase sigma factor BG0794 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 51598821 Common cheY-2 chemotaxis response regulator BG0580 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 51598841 Common pfs-2 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative BG0601 93 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 51599054 Common rbfA ribosome-binding factor A BG0828 122 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 51599000 Pathogen - hypothetical protein BG0772 1 None None None 51598910 Common dnaJ-2 heat shock protein BG0678 232 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 51599078 Common hrpA ATP-dependent helicase BG0852 163 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 51598599 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B BG0342 210 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 51598710 Common - lipopolysaccharide biosynthesis-related protein BG0463 123 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 51598716 Pathogen - lipoprotein, putative BG0471 1 None None None 51599094 Common arcA arginine deiminase BG0868 57 COG2235 ArcA, Arginine deiminase Amino acid transport and metabolism 51598766 Common - hypothetical protein BG0523 119 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 51598485 Pathogen - lipoprotein, putative BG0227 1 COG2859 COG2859, Uncharacterized protein conserved in bacteria Function unknown 51599071 Pathogen - hypothetical protein BG0845 1 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 51598642 Common bmpD basic membrane protein D BG0386 83 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 51598346 Pathogen - hypothetical protein BG0084 2 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 51598892 Pathogen - hypothetical protein BG0660 1 None None None 51598299 Common parE DNA topoisomerase IV subunit B BG0036 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 51598592 Common oppD oligopeptide ABC transporter, ATP-binding protein BG0335 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 51599028 Common apt adenine phosphoribosyltransferase BG0801 175 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 51598699 Common - nucleotide sugar epimerase BG0452 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 51598309 Common - hypothetical protein BG0046 7 None None None 51599013 Common rrp-2 response regulatory protein BG0786 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 51599088 Common uvrA excinuclease ABC, subunit A BG0862 241 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 51598828 Pathogen - hypothetical protein BG0588 1 None None None 51598865 Common lon-2 ATP-dependent protease LA BG0629 212 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 51598323 Common - hypothetical protein BG0061 27 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 51598997 Common oppC-2 oligopeptide ABC transporter, permease protein BG0769 132 COG4239 COG4239, ABC-type uncharacterized transport system, permease component General function prediction only 51598670 Common cheR-2 chemotaxis protein methyltransferase BG0416 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 51598869 Common - hypothetical protein BG0634 53 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 51598517 Common - cell division protein, putative BG0260 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 51598265 Common - beta-N-acetylhexosaminidase, putative BG0002 170 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 51598808 Common ptsH-2 phosphocarrier protein HPr BG0567 70 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 51598632 Common metK S-adenosylmethionine synthetase BG0375 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 51598435 Pathogen - hypothetical protein BG0173 1 None None None 51598803 Common lig DNA ligase BG0562 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 51598344 Common nifS nifS protein BG0082 239 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 51598619 Common - periplasmic protein BG0362 160 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 51598487 Common serS seryl-tRNA synthetase BG0229 243 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 51598439 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA BG0177 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 51598622 Common yscI putative aminopeptidase 1 BG0365 44 COG1362 LAP4, Aspartyl aminopeptidase Amino acid transport and metabolism 51598503 Common glpA glycerol-3-phosphate dehydrogenase, anaerobic BG0245 144 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 51598707 Common - hypothetical protein BG0460 4 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 51598911 Common - HemN-related protein BG0679 159 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 51598923 Pathogen flaA flagellar filament outer layer protein BG0691 2 None None None 51598412 Common nagB glucosamine-6-phosphate deaminase BG0150 78 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 51598876 Common mfd transcription-repair coupling factor BG0642 217 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 51598606 Common pyk pyruvate kinase BG0349 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 51599057 Common pnpA polynucleotide phosphorylase/polyadenylase BG0831 233 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 51599082 Common xylR-2 xylose operon regulatory protein BG0856 134 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 51598297 Pathogen - hypothetical protein BG0034 1 None None None 51598725 Common lspA signal peptidase II BG0482 155 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 51598864 Common clpX ATP-dependent protease ATP-binding subunit BG0628 243 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 51598316 Common - triosephosphate isomerase BG0054 217 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 51598393 Common - hypothetical protein BG0131 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 51598886 Common recD exodeoxyribonuclease V, alpha chain BG0654 131 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 51598663 Common manA mannose-6-phosphate isomerase BG0409 42 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 51598833 Common recG DNA recombinase BG0593 220 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 51598328 Common - peptidase, putative BG0066 197 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 51598742 Common rpsQ 30S ribosomal protein S17 BG0499 233 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 51598635 Common pkcI protein kinase C1 inhibitor BG0378 222 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 51599031 Common rpmA 50S ribosomal protein L27 BG0804 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 51598583 Common - hypothetical protein BG0326 7 None None None 51598288 Common - hypothetical protein BG0025 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 51599039 Common - hypothetical protein BG0813 171 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 51598556 Common hslV ATP-dependent protease peptidase subunit BG0299 150 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 51598507 Common - hypothetical protein BG0249 232 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 51598750 Common rpsE 30S ribosomal protein S5 BG0507 248 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 51598779 Common - pantothenate kinase BG0536 94 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 51598946 Common fus-2 elongation factor G BG0715 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 51598677 Common - sensory transduction histidine kinase/response regulator BG0423 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 51599052 Common nusA transcription elongation factor NusA BG0826 226 COG0195 NusA, Transcription elongation factor Transcription 51599008 Pathogen - hypothetical protein BG0780 1 None None None 51598590 Common oppC-1 oligopeptide ABC transporter, permease protein BG0333 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 51598669 Pathogen - hypothetical protein BG0415 1 None None None 51598757 Common rpoA DNA-directed RNA polymerase subunit alpha BG0514 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 51598516 Common rpsU 30S ribosomal protein S21 BG0259 68 None None None 51598473 Pathogen - hypothetical protein BG0214 1 None None None 51598453 Pathogen - lipoprotein, putative BG0191 1 None None None 51598955 Common kdtB lipopolysaccharide biosynthesis-related protein BG0724 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 51598961 Pathogen - hypothetical protein BG0730 1 None None None 51598882 Pathogen - hypothetical protein BG0649 1 None None None 51598283 Common pfpB diphosphate--fructose-6-phosphate 1-phosphotransferase BG0020 129 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 51598718 Common - hypothetical protein BG0475 33 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 51599072 Common miaA 2-methylthio-N6-isopentyladenosine tRNA modification enzyme BG0846 212 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 51598350 Common ldh L-lactate dehydrogenase BG0088 167 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 51598388 Pathogen - hypothetical protein BG0126 1 None None None 51599020 Common - hypothetical protein BG0793 54 COG2861 COG2861, Uncharacterized protein conserved in bacteria Function unknown 51598765 Common - hypothetical protein BG0522 40 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 51598362 Common - hypothetical protein BG0100 164 COG1162 COG1162, Predicted GTPases General function prediction only 51598978 Common ylxH-3 minD-related ATP-binding protein BG0748 182 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 51598422 Pathogen - hypothetical protein BG0160 1 None None None 51598345 Pathogen - hypothetical protein BG0083 1 None None None 51598840 Common metG methionyl-tRNA synthetase BG0600 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 51598900 Common ptsG PTS system, glucose-specific IIBC component BG0668 50 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 51598784 Common phnP phnP protein BG0541 95 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 51598889 Common - nicotinate phosphoribosyltransferase BG0657 110 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 51598418 Pathogen - antigen, S2, putative BG0156 1 None None None 51598741 Common rpmC 50S ribosomal protein L29 BG0498 28 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 51598734 Pathogen - hypothetical protein BG0491 1 None None None 51598572 Common cheW-1 purine-binding chemotaxis protein BG0315 128 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 51598545 Pathogen flbC flagellar protein BG0288 2 COG3144 FliK, Flagellar hook-length control protein Cell motility and secretion 51598404 Common mtrC membrane fusion protein BG0142 140 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 51598573 Common ftsJ cell division protein BG0316 138 COG0293 FtsJ, 23S rRNA methylase Translation, ribosomal structure and biogenesis 51598440 Common trmE tRNA modification GTPase TrmE BG0178 223 COG0486 ThdF, Predicted GTPase General function prediction only 51598587 Common oppA-2 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein BG0330 208 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 51598369 Common - hypothetical protein BG0107 13 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 51598678 Common - hydrolase BG0428 83 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 51598931 Common gph phosphoglycolate phosphatase BG0699 162 COG0546 Gph, Predicted phosphatases General function prediction only 51598868 Common rpsD 30S ribosomal protein S4 BG0632 234 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 51598809 Common ptsI phosphoenolpyruvate-protein phosphatase BG0568 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 51598562 Common divIB cell division protein BG0305 17 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 51598652 Pathogen secE preprotein translocase subunit SecE BG0396 1 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 51598820 Common - hypothetical protein BG0579 11 None None None 51598518 Common uppP undecaprenyl pyrophosphate phosphatase BG0261 188 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 51598999 Pathogen - hypothetical protein BG0771 1 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 51598434 Common - hypothetical protein BG0172 74 COG2304 COG2304, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 51598996 Common nth endonuclease III BG0768 239 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 51598853 Pathogen - hypothetical protein BG0613 2 None None None 51599079 Common topA DNA topoisomerase I BG0853 246 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 51598671 Pathogen - hypothetical protein BG0417 1 None None None 51598854 Common glyA serine hydroxymethyltransferase BG0614 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 51598481 Common alaS alanyl-tRNA synthetase BG0223 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 51599063 Pathogen - hypothetical protein BG0837 2 COG1413 COG1413, FOG: HEAT repeat Energy production and conversion 51599095 Common arcB ornithine carbamoyltransferase, catabolic BG0869 238 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 51598591 Pathogen - hypothetical protein BG0334 1 None None None 51598534 Common fliQ flagellar biosynthesis protein BG0277 129 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 51599014 Common - sensory transduction histidine kinase, putative BG0787 195 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 51598893 Common nhaC-2 Na+/H+ antiporter BG0661 75 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 51598984 Common pbp-3 penicillin-binding protein BG0754 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 51598748 Common rplF 50S ribosomal protein L6 BG0505 244 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 51598303 Common cheR-1 chemotaxis protein methyltransferase BG0040 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 51598664 Common fruA-1 PTS system, fructose-specific IIABC component BG0410 84 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 51598794 Pathogen - hypothetical protein BG0553 1 None None None 51599003 Common - membrane spanning protein, putative BG0775 39 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 51598623 Pathogen - hypothetical protein BG0366 2 COG1264 PtsG, Phosphotransferase system IIB components Carbohydrate transport and metabolism 51598279 Common glpE glpE protein BG0016 20 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 51599006 Common - hypothetical protein BG0778 16 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 51599047 Common - outer membrane protein BG0821 151 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 51598780 Common - aldose reductase, putative BG0537 195 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 51598501 Common glpF glycerol uptake facilitator BG0243 134 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 51599038 Common pth peptidyl-tRNA hydrolase BG0812 209 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 51598953 Common rplS 50S ribosomal protein L19 BG0722 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 51599059 Common - hypothetical protein BG0833 19 COG0795 COG0795, Predicted permeases General function prediction only 51598787 Common - zinc protease, putative BG0544 191 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 51598387 Pathogen - hypothetical protein BG0125 1 None None None 51598885 Pathogen - hypothetical protein BG0652 1 None None None 51598904 Common groEL chaperonin GroEL BG0672 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 51598974 Pathogen - hypothetical protein BG0744 1 None None None 51598922 Pathogen - hypothetical protein BG0690 1 None None None 51598975 Common - adenylyl cyclase, CyaB-type, putative BG0745 4 COG1437 CyaB, Adenylate cyclase, class 2 (thermophilic) Nucleotide transport and metabolism 51598708 Pathogen - hypothetical protein BG0461 1 None None None 51598443 Common flgL flagellar hook-associated protein FlgL BG0181 88 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 51599062 Common mviN virulence factor mviN protein BG0836 177 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 51598881 Common pepX putative aminopeptidase 2 BG0648 43 COG1362 LAP4, Aspartyl aminopeptidase Amino acid transport and metabolism 51598550 Common fliG flagellar motor switch protein G BG0293 125 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 51598634 Pathogen - hypothetical protein BG0377 1 None None None 51598689 Common gyrA DNA gyrase, subunit A BG0442 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 51598474 Pathogen - lipoprotein, putative BG0216 1 None None None 51598871 Common cdd cytidine deaminase BG0636 105 COG0295 Cdd, Cytidine deaminase Nucleotide transport and metabolism 51598722 Common - ABC transporter, ATP-binding protein BG0479 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 51598830 Common mcp-1 methyl-accepting chemotaxis protein BG0590 143 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 51598897 Common potA spermidine/putrescine ABC transporter, ATP-binding protein BG0665 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 51598482 Common fliG-1 flagellar motor switch protein BG0224 111 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 51598755 Common rpsM 30S ribosomal protein S13 BG0512 247 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 51598557 Pathogen - hypothetical protein BG0300 1 None None None 51598357 Common atpA V-type ATP synthase subunit A BG0095 247 COG1155 NtpA, Archaeal/vacuolar-type H+-ATPase subunit A Energy production and conversion 51598586 Common oppA-1 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein BG0329 204 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 51599056 Common rpsO 30S ribosomal protein S15 BG0830 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 51598647 Common rplL 50S ribosomal protein L7/L12 BG0391 214 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 51598683 Pathogen - hypothetical protein BG0436 1 None None None 51598275 Common truA tRNA pseudouridine synthase A BG0012 232 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 51598373 Pathogen - hypothetical protein BG0111 1 None None None 51598867 Pathogen - hypothetical protein BG0631 1 None None None 51598813 Pathogen - hypothetical protein BG0572 1 None None None 51598394 Pathogen - hypothetical protein BG0132 1 COG1354 COG1354, Uncharacterized conserved protein Function unknown 51598666 Common nucA endonuclease precursor BG0412 44 COG1864 NUC1, DNA/RNA endonuclease G, NUC1 Nucleotide transport and metabolism 51598475 Common efp translation elongation factor P BG0217 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 51598918 Common - hypothetical protein BG0686 75 COG1430 COG1430, Uncharacterized conserved protein Function unknown 51598645 Common rpoC DNA-directed RNA polymerase subunit beta' BG0389 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 51598438 Common gidB glucose inhibited division protein B BG0176 71 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 51598717 Common dnaX DNA polymerase III subunits gamma and tau BG0474 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 51598615 Common - hypothetical protein BG0358 122 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 51598282 Pathogen - hypothetical protein BG0019 1 None None None 51598849 Common mcp-2 methyl-accepting chemotaxis protein BG0609 154 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 51598455 Common - hypothetical protein BG0193 119 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 51598992 Common groES co-chaperonin GroES BG0762 215 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 51598744 Common rplX 50S ribosomal protein L24 BG0501 207 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 51598411 Common nagA N-acetylglucosamine-6-phosphate deacetylase BG0149 118 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 51598462 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase BG0200 211 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 51598442 Common flgK flagellar hook-associated protein FlgK BG0180 106 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 51598637 Common - hypothetical protein BG0380 14 COG1626 TreA, Neutral trehalase Carbohydrate transport and metabolism 51598363 Common murI glutamate racemase BG0101 185 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 51598499 Pathogen - hypothetical protein BG0241 1 None None None 51598797 Pathogen - hypothetical protein BG0556 4 COG3147 DedD, Uncharacterized protein conserved in bacteria Function unknown 51598675 Pathogen - hypothetical protein BG0421 2 None None None 51598798 Common coaE dephospho-CoA kinase BG0557 108 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 51598312 Common - hypothetical protein BG0050 12 COG1738 COG1738, Uncharacterized conserved protein Function unknown 51599018 Common pdxK pyridoxal kinase BG0791 13 COG2240 PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase Coenzyme metabolism 51598818 Common cheA-1 chemotaxis histidine kinase BG0577 148 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 51598533 Common fliR flagellar biosynthesis protein BG0276 9 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 51599011 Common - hypothetical protein BG0784 17 COG1694 MazG, Predicted pyrophosphatase General function prediction only 51598321 Common - hypothetical protein BG0059 193 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 51598304 Common phoU phosphate transport system regulatory protein BG0041 171 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 51598697 Common jag spoIIIJ-associtated protein BG0450 60 COG1847 Jag, Predicted RNA-binding protein General function prediction only 51598995 Pathogen - antigen, p83/100 BG0765 3 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 51598956 Pathogen rpmF 50S ribosomal protein L32 BG0725 2 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 51598603 Common - hypothetical protein BG0346 20 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 51598702 Common napA-1 Na+/H+ antiporter BG0455 194 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 51598937 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase BG0705 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 51598374 Common dnaB replicative DNA helicase BG0112 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 51598667 Pathogen - hypothetical protein BG0413 1 None None None 51598982 Common pgi glucose-6-phosphate isomerase BG0752 203 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 51598597 Common rplM 50S ribosomal protein L13 BG0340 220 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 51598848 Pathogen - hypothetical protein BG0608 1 None None None 51598917 Pathogen - hypothetical protein BG0685 1 None None None 51598626 Common tyrS tyrosyl-tRNA synthetase BG0369 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 51598409 Common flaB flagellin BG0147 108 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 51598906 Common - hypothetical protein BG0674 30 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 51598930 Pathogen - hypothetical protein BG0698 1 None None None 51598774 Common - NH(3)-dependent NAD+ synthetase BG0531 183 COG0171 NadE, NAD synthase Coenzyme metabolism 51598427 Common tpn50 outer membrane protein BG0165 66 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 51598935 Common mcp-4 methyl-accepting chemotaxis protein BG0703 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 51598624 Common gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase BG0367 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 51598334 Pathogen - hypothetical protein BG0072 1 None None None 51598417 Pathogen - hypothetical protein BG0155 1 None None None 51598407 Common proW glycine betaine, L-proline ABC transporter, permease protein BG0145 88 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 51598493 Common - hbbU protein BG0235 158 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 51598379 Common malX PTS system, maltose and glucose-specific IIABC component BG0117 49 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 51598574 Common ispB octaprenyl-diphosphate synthase BG0317 237 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 51598423 Pathogen - hypothetical protein BG0161 1 None None None 51598894 Common potD spermidine/putrescine ABC transporter, binding periplasmic protein BG0662 131 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 51599042 Pathogen tdk thymidine kinase BG0816 1 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 51598519 Common - hypothetical protein BG0262 171 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 51598512 Common - hypothetical protein BG0255 68 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 51598941 Common - mevalonate pyrophosphate decarboxylase BG0709 22 COG3407 MVD1, Mevalonate pyrophosphate decarboxylase Lipid metabolism 51598985 Pathogen - hypothetical protein BG0755 2 None None None 51599023 Common flgI flagellar basal body P-ring protein BG0796 62 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 51598852 Common cysS cysteinyl-tRNA synthetase BG0612 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 51598523 Common lepB-3 signal peptidase I BG0266 58 None None None 51598823 Common lgtD glycosyl transferase BG0583 161 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 51598529 Common ylxH-1 minD-related ATP-binding protein BG0272 161 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 51598575 Pathogen - hypothetical protein BG0318 1 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 51598560 Common ftsZ cell division protein FtsZ BG0303 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 51598589 Common oppB-1 oligopeptide ABC transporter, permease protein BG0332 218 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 51598665 Pathogen - hypothetical protein BG0411 1 None None None 51598441 Pathogen - flagellar protein, putative BG0179 1 None None None 51598831 Common dnaE DNA polymerase III subunit alpha BG0591 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 51598761 Common tlyA hemolysin BG0518 130 COG1189 COG1189, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 51598356 Common atpB V-type ATP synthase subunit B BG0094 247 COG1156 NtpB, Archaeal/vacuolar-type H+-ATPase subunit B Energy production and conversion 51598585 Pathogen - glycerol-3-phosphate O-acyltransferase, putative BG0328 2 None None None 51598294 Common lepB-2 signal peptidase I BG0031 135 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 51599058 Common - hypothetical protein BG0832 7 None None None 51598698 Pathogen - hypothetical protein BG0451 1 None None None 51598773 Common grpE grpE protein BG0530 235 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 51598277 Common priA primosomal protein N BG0014 205 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 51598612 Pathogen - hypothetical protein BG0355 1 None None None 51598976 Common ntpJ K+ transport protein BG0746 143 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 51598386 Common rpsB 30S ribosomal protein S2 BG0124 232 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 51598410 Common fliD flagellar hook-associated protein FliD BG0148 23 COG1345 FliD, Flagellar capping protein Cell motility and secretion 51599001 Pathogen - hypothetical protein BG0773 1 None None None 51598884 Common fruK 1-phosphofructokinase BG0651 104 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 51599044 Pathogen - hypothetical protein BG0818 3 None None None 51598786 Pathogen - hypothetical protein BG0543 1 None None None 51598596 Common rpsI 30S ribosomal protein S9 BG0339 249 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 51598364 Common asnC asparaginyl-tRNA synthetase BG0102 226 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 51598489 Common - hypothetical protein BG0231 51 COG1026 COG1026, Predicted Zn-dependent peptidases, insulinase-like General function prediction only 51598728 Common - hypothetical protein BG0485 179 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 51598636 Common mgtE Mg2+ transport protein BG0379 170 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 51598342 Pathogen - hypothetical protein BG0080 1 None None None 51598796 Common xylB xylulokinase BG0555 41 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 51598468 Common gtaB UTP--glucose-1-phosphate uridylyltransferase BG0209 229 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 161898745 Common rbgA ribosomal biogenesis GTPase BG0666 106 COG1161 COG1161, Predicted GTPases General function prediction only 51598727 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase BG0484 215 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 51598659 Common proS prolyl-tRNA synthetase BG0405 103 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 51598274 Common - hypothetical protein BG0011 10 COG1655 COG1655, Uncharacterized protein conserved in bacteria Function unknown 51598684 Common - hypothetical protein BG0437 3 None None None 51598395 Common recA recombinase A BG0133 241 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 51598732 Common rplC 50S ribosomal protein L3 BG0489 241 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 51598314 Common ung uracil-DNA glycosylase BG0052 129 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 51598437 Common - MoxR-related protein BG0175 179 COG0714 COG0714, MoxR-like ATPases General function prediction only 51598838 Common murD UDP-N-acetylmuramoylalanine--D-glutamate ligase BG0598 199 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 51598646 Common rpoB DNA-directed RNA polymerase subunit beta BG0390 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 51598866 Pathogen - hypothetical protein BG0630 1 None None None 51598491 Common rho transcription termination factor Rho BG0233 205 COG1158 Rho, Transcription termination factor Transcription 51598461 Common ddlA D-alanine--D-alanine ligase BG0199 222 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 51598644 Common rpsL 30S ribosomal protein S12 BG0388 246 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 51598476 Common pstS phosphate ABC transporter, periplasmic phosphate-binding protein BG0218 103 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 51598721 Pathogen - hypothetical protein BG0478 3 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 51598807 Pathogen - hypothetical protein BG0566 2 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 51599019 Common gcp O-sialoglycoprotein endopeptidase BG0792 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 51598625 Common clpA ATP-dependent Clp protease, subunit A BG0368 221 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 51598377 Common ssb single-stranded DNA-binding protein BG0115 186 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 51598333 Common - hypothetical protein BG0071 6 COG4656 RnfC, Predicted NADH:ubiquinone oxidoreductase, subunit RnfC Energy production and conversion 51598938 Common - 3-hydroxy-3-methylglutaryl-CoA synthase BG0706 28 COG3425 PksG, 3-hydroxy-3-methylglutaryl CoA synthase Lipid metabolism 51598994 Common - hypothetical protein BG0764 2 COG1520 COG1520, FOG: WD40-like repeat Function unknown 51598711 Common - hypothetical protein BG0464 7 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 51599010 Common - hypothetical protein BG0783 10 COG2035 COG2035, Predicted membrane protein Function unknown 51598627 Common glyS glycyl-tRNA synthetase BG0370 88 COG0423 GRS1, Glycyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 51598268 Common trsA tryptophanyl-tRNA synthetase BG0005 246 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 51598705 Common ntrA RNA polymerase sigma-54 factor BG0458 144 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 51598819 Common cheB-2 protein-glutamate methylesterase BG0578 150 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 51599036 Common - regulatory protein SpoVG BG0809 24 COG2088 SpoVG, Uncharacterized protein, involved in the regulation of septum location Cell envelope biogenesis, outer membrane 51599070 Common - cytidylate kinase BG0844 35 COG1102 Cmk, Cytidylate kinase Nucleotide transport and metabolism 51598767 Common pheS phenylalanyl-tRNA synthetase subunit alpha BG0524 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 51599012 Common - hypothetical protein BG0785 191 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 51598851 Common murB UDP-N-acetylmuramate dehydrogenase BG0611 166 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 51598313 Common spoU spoU protein BG0051 148 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 51599029 Common rplU 50S ribosomal protein L21 BG0802 117 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 51598305 Pathogen - hypothetical protein BG0042 2 None None None 51598322 Common trxA thioredoxin BG0060 232 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 51599043 Pathogen - hypothetical protein BG0817 1 None None None 51598963 Common dnaG DNA primase BG0733 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 51598658 Common - glutamate transporter, putative BG0404 2 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 51598880 Pathogen - hypothetical protein BG0647 1 None None None 51598966 Common - hypothetical protein BG0736 5 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 51598983 Common - hypothetical protein BG0753 17 COG1475 Spo0J, Predicted transcriptional regulators Transcription 51598524 Common dnaK-1 heat shock protein 70 BG0267 234 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 51598822 Common pyrH uridylate kinase BG0582 45 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 51598285 Common ruvB Holliday junction DNA helicase B BG0022 216 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 51598887 Common recB exodeoxyribonuclease V, beta chain BG0655 132 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 51598332 Pathogen - hypothetical protein BG0070 1 COG3356 COG3356, Predicted membrane protein Function unknown 51599022 Common - hypothetical protein BG0795 19 COG3951 COG3951, Rod binding protein Cell envelope biogenesis, outer membrane / Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 51598944 Common - hypothetical protein BG0713 4 COG2340 COG2340, Uncharacterized protein with SCP/PR1 domains Function unknown 51598577 Common - hypothetical protein BG0320 6 COG4603 COG4603, ABC-type uncharacterized transport system, permease component General function prediction only 51598406 Common proX glycine betaine, L-proline ABC transporter, binding protein BG0144 64 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 51598436 Common - hypothetical protein BG0174 89 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 51598521 Common - hypothetical protein BG0264 31 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 51598559 Common - hypothetical protein BG0302 4 None None None 51598895 Common potC spermidine/putrescine ABC transporter, permease protein BG0663 158 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 51598343 Pathogen - hypothetical protein BG0081 1 None None None 51598424 Common - Na+/Ca+ exchange protein, putative BG0162 43 COG0530 ECM27, Ca2+/Na+ antiporter Inorganic ion transport and metabolism 51598408 Common proV glycine betaine, L-proline ABC transporter, ATP-binding protein BG0146 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 51598760 Common - hypothetical protein BG0517 81 COG1692 COG1692, Uncharacterized protein conserved in bacteria Function unknown 51598494 Common rpsT 30S ribosomal protein S20 BG0236 143 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 51598936 Common mcp-5 methyl-accepting chemotaxis protein BG0704 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 51598416 Pathogen - hypothetical protein BG0154 1 None None None 51598540 Common motB flagellar motor protein MotB BG0283 105 COG1360 MotB, Flagellar motor protein Cell motility and secretion 51598428 Pathogen - hypothetical protein BG0166 1 None None None 51599085 Common clpC ATP-dependent Clp protease, subunit C BG0859 216 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 51598979 Common pfk diphosphate--fructose-6-phosphate 1-phosphotransferase BG0749 145 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 51598365 Pathogen - hypothetical protein BG0103 1 None None None 51598542 Common flbD flagellar protein BG0285 5 COG1582 FlgEa, Uncharacterized protein, possibly involved in motility Cell motility and secretion 51598914 Common lysK lysyl-tRNA synthetase BG0682 77 COG1384 LysS, Lysyl-tRNA synthetase (class I) Translation, ribosomal structure and biogenesis 51598415 Pathogen - lipoprotein, putative BG0153 2 None None None 51598425 Common - hypothetical protein BG0163 18 COG1306 COG1306, Uncharacterized conserved protein Function unknown 51598384 Common frr ribosome releasing factor BG0122 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 51598916 Pathogen - hypothetical protein BG0684 2 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 51598527 Common - hypothetical protein BG0270 37 COG1315 COG1315, Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain DNA replication, recombination, and repair 51598492 Common - hypothetical protein BG0234 27 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 51599069 Common - hypothetical protein BG0843 137 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 51598730 Common tuf elongation factor Tu BG0487 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 51598933 Common rbsC-1 ribose/galactose ABC transporter, permease protein BG0701 108 COG4603 COG4603, ABC-type uncharacterized transport system, permease component General function prediction only 51598429 Common - dnaK suppressor, putative BG0167 54 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 51598811 Common htpG heat shock protein 90 BG0570 149 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 51598600 Common gatA Glu-tRNA(Gln) amidotransferase, subunit A BG0343 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 51598920 Pathogen - hypothetical protein BG0688 2 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 51599025 Common flgG flagellar basal body rod protein FlgG BG0798 125 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 51598929 Pathogen - hypothetical protein BG0697 1 None None None 51598746 Common rpsN 30S ribosomal protein S14 BG0503 196 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 51598576 Common - hypothetical protein BG0319 4 COG1079 COG1079, Uncharacterized ABC-type transport system, permease component General function prediction only 51598401 Common - long-chain-fatty-acid CoA ligase BG0139 210 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 51598565 Common murF UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase BG0308 211 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 51598839 Common femA femA protein BG0599 22 COG2348 COG2348, Uncharacterized protein involved in methicillin resistance Defense mechanisms 51598891 Common nhaC-1 Na+/H+ antiporter BG0659 62 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 51598536 Pathogen fliZ flagellar biosynthesis protein BG0279 1 None None None 51598284 Common - S-adenosylmethionine: tRNA ribosyltransferase-isomerase BG0021 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 51598341 Common - hypothetical protein BG0079 3 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 51598951 Common - hypothetical protein BG0720 26 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 51598381 Common - zinc protease, putative BG0119 178 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 51598825 Pathogen - hypothetical protein BG0585 2 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 51598621 Pathogen - lipoprotein LA7 BG0364 1 None None None 51598578 Common mglA-1 methylgalactoside ABC transporter, ATP-binding protein BG0321 241 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 51598673 Common traB pheromone shutdown protein BG0419 38 COG1916 COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) Function unknown 51598968 Common mreC rod shape-determining protein BG0738 124 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 51598701 Common aspS aspartyl-tRNA synthetase BG0454 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 51598295 Common - hypothetical protein BG0032 10 COG1262 COG1262, Uncharacterized conserved protein Function unknown 51598306 Pathogen - hypothetical protein BG0043 1 None None None 51598816 Common cheW-2 purine-binding chemotaxis protein BG0575 126 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 51598690 Common gyrB DNA gyrase, subunit B BG0443 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 51599016 Pathogen - colicin V production protein, putative BG0789 1 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 51598850 Common mcp-3 methyl-accepting chemotaxis protein BG0610 74 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 51598651 Common nusG transcription antitermination factor BG0395 215 COG0250 NusG, Transcription antiterminator Transcription 51598859 Common - hypothetical protein BG0619 79 COG1871 CheD, Chemotaxis protein; stimulates methylation of MCP proteins Cell motility and secretion / Signal transduction mechanisms 51598980 Common nox coenzyme A disulfide reductase BG0750 242 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 51598899 Common - N-acetylmannosamine-6-phosphate 2-epimerase BG0667 43 COG3010 NanE, Putative N-acetylmannosamine-6-phosphate epimerase Carbohydrate transport and metabolism 51598553 Common flgC flagellar basal body rod protein FlgC BG0296 126 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 51598628 Common gltX glutamyl-tRNA synthetase BG0371 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 51598805 Pathogen - hypothetical protein BG0564 1 None None None 51598319 Common - hypothetical protein BG0057 43 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 51599051 Common - hypothetical protein BG0825 12 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 51598595 Common eno enolase BG0338 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 51598538 Common fliM flagellar motor switch protein FliM BG0281 107 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 51598947 Common xylR-1 xylose operon regulatory protein BG0716 86 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 51598269 Common - hypothetical protein BG0006 119 COG0628 PerM, Predicted permease General function prediction only 51598776 Pathogen - inositol monophosphatase BG0533 1 None None None 51598940 Common mvaA 3-hydroxy-3-methylglutaryl-CoA reductase BG0708 44 COG1257 HMG1, Hydroxymethylglutaryl-CoA reductase Lipid metabolism 51598993 Common - ABC transporter, ATP-binding protein BG0763 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 51598614 Pathogen - hypothetical protein BG0357 1 None None None 51598649 Common rplA 50S ribosomal protein L1 BG0393 247 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 51598431 Pathogen - hypothetical protein BG0169 2 None None None 51598800 Pathogen - hypothetical protein BG0559 1 None None None 51598477 Common pstC phosphate ABC transporter, permease protein BG0219 228 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 51598680 Pathogen - hypothetical protein BG0431 1 None None None 51598371 Common - basic membrane protein BG0109 110 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 51598470 Common - hypothetical protein BG0211 9 None None None 51598601 Pathogen gatC aspartyl/glutamyl-tRNA amidotransferase subunit C BG0344 1 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 51598445 Common csrA carbon storage regulator BG0183 66 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 51598791 Common fus-1 elongation factor G BG0550 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 51598272 Common - hypothetical protein BG0009 5 None None None 51599065 Common panF sodium/panthothenate symporter BG0839 90 COG4145 PanF, Na+/panthothenate symporter Coenzyme metabolism 51598902 Common fur ferric uptake regulation protein BG0670 20 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 51598397 Pathogen - hypothetical protein BG0135 3 None None None 51598581 Pathogen - hypothetical protein BG0324 2 COG1652 XkdP, Uncharacterized protein containing LysM domain Function unknown 51598847 Common argS arginyl-tRNA synthetase BG0607 242 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 51599048 Pathogen - hypothetical protein BG0822 1 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 51598497 Common - hypothetical protein BG0239 18 COG3391 COG3391, Uncharacterized conserved protein Function unknown 51598568 Pathogen - hypothetical protein BG0311 1 None None None 51598548 Common fliI flagellum-specific ATP synthase BG0291 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 51598464 Common hflK Lambda CII stability-governing protein BG0203 163 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 51598399 Common hisS histidyl-tRNA synthetase BG0137 249 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 51598928 Pathogen - hypothetical protein BG0696 1 None None None 51598552 Pathogen fliE flagellar hook-basal body protein FliE BG0295 3 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 51599037 Common ctc 50S ribosomal protein L25/general stress protein Ctc BG0811 170 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 51598535 Common fliP flagellar biosynthesis protein FliP BG0278 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 51599092 Pathogen - hypothetical protein BG0866 2 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 51598781 Common - hypothetical protein BG0538 22 None None None 51598611 Common - hypothetical protein BG0354 3 None None None 51598754 Common rpmJ 50S ribosomal protein L36 BG0511 129 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 51599005 Common - ribonuclease Z BG0777 97 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 51598310 Pathogen - hypothetical protein BG0048 1 None None None 51598355 Common atpD V-type ATP synthase subunit D BG0093 16 COG1394 NtpD, Archaeal/vacuolar-type H+-ATPase subunit D Energy production and conversion 51598687 Common - hypothetical protein BG0440 2 None None None 51598954 Pathogen - hypothetical protein BG0723 2 None None None 51598789 Common - hypothetical protein BG0548 41 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 51598349 Common - hypothetical protein BG0087 95 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 51598385 Common tsf elongation factor Ts BG0123 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 51598331 Common - hypothetical protein BG0069 25 COG1963 COG1963, Uncharacterized protein conserved in bacteria Function unknown 51598458 Common spoT guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase BG0196 205 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 51598723 Common - hypothetical protein BG0480 76 COG1496 COG1496, Uncharacterized conserved protein Function unknown 51598973 Common - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase BG0743 85 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 51598870 Pathogen - hypothetical protein BG0635 1 None None None 51598921 Common - hypothetical protein BG0689 164 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 51598400 Common pbp-1 penicillin-binding protein BG0138 206 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 51598522 Common - hypothetical protein BG0265 191 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 51598745 Common rplE 50S ribosomal protein L5 BG0502 248 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 51598444 Common - flagellar assembly protein FliW BG0182 28 COG1699 COG1699, Uncharacterized protein conserved in bacteria Function unknown 51598579 Common tpn38b exported protein BG0322 18 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 51598988 Common - histidine phosphokinase/phophatase, putative BG0758 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 51598836 Pathogen - hypothetical protein BG0596 1 None None None 51599035 Common - hypothetical protein BG0808 86 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 51598330 Common - aminopeptidase II BG0068 55 COG2309 AmpS, Leucyl aminopeptidase (aminopeptidase T) Amino acid transport and metabolism 51598430 Common infA translation initiation factor IF-1 BG0168 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 51598456 Common prfA peptide chain release factor 1 BG0194 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 51598502 Common glpK glycerol kinase BG0244 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 51598768 Common pheT phenylalanyl-tRNA synthetase subunit beta BG0525 136 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 51598896 Common potB spermidine/putrescine ABC transporter, permease protein BG0664 197 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 51598339 Pathogen - hypothetical protein BG0077 2 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 51598965 Common - hypothetical protein BG0735 25 COG1579 COG1579, Zn-ribbon protein, possibly nucleic acid-binding General function prediction only 51598569 Pathogen - hypothetical protein BG0312 1 COG5014 COG5014, Predicted Fe-S oxidoreductase General function prediction only 51598674 Common adk adenylate kinase BG0420 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 51598691 Common dnaA chromosomal replication initiator protein BG0444 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 51598537 Common fliN flagellar motor switch protein BG0280 124 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 51598541 Common motA flagellar motor rotation protein A BG0284 103 COG1291 MotA, Flagellar motor component Cell motility and secretion 51599084 Common ileS isoleucyl-tRNA synthetase BG0858 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 51599077 Pathogen - hypothetical protein BG0851 1 None None None 51598528 Pathogen - hypothetical protein BG0271 1 None None None 51598414 Common secA preprotein translocase subunit SecA BG0152 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 51598629 Pathogen - hypothetical protein BG0372 1 None None None 51598372 Common fadA acetyl-CoA C-acetyltransferase BG0110 177 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 51598657 Common - hypothetical protein BG0403 7 None None None 51598903 Common - serine/threonine kinase, putative BG0671 5 None None None 51598738 Common rplV 50S ribosomal protein L22 BG0495 187 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 51598566 Pathogen - hypothetical protein BG0309 1 None None None 51598426 Common malQ 4-alpha-glucanotransferase BG0164 64 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 51598934 Common rbsC-2 ribose/galactose ABC transporter, permease protein BG0702 129 COG1079 COG1079, Uncharacterized ABC-type transport system, permease component General function prediction only 51599024 Pathogen - hypothetical protein BG0797 1 None None None 51598981 Common gltP glutamate transporter BG0751 137 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 51598498 Common lnt apolipoprotein N-acyltransferase BG0240 146 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 51598806 Pathogen - hypothetical protein BG0565 1 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 51598558 Common - smg protein BG0301 210 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 51599007 Common clpP ATP-dependent Clp protease proteolytic subunit BG0779 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 51598817 Pathogen - hypothetical protein BG0576 1 None None None 51598307 Common - P115 protein BG0044 182 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 51599067 Common - hypothetical protein BG0841 11 None None None 51598530 Common flhF flagellar biosynthesis regulator FlhF BG0273 235 COG1419 FlhF, Flagellar GTP-binding protein Cell motility and secretion 51598824 Common - ABC transporter, ATP-binding protein BG0584 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 51598700 Common fba fructose-bisphosphate aldolase BG0453 116 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 51598709 Common - hypothetical protein BG0462 225 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 51598320 Common tlyC hemolysin BG0058 219 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 51598858 Common dacA serine-type D-Ala-D-Ala carboxypeptidase BG0618 153 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 51598857 Common lctP L-lactate permease BG0617 105 COG1620 LldP, L-lactate permease Energy production and conversion 51598695 Common rnpA ribonuclease P protein component BG0448 5 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 51599017 Common murG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase BG0790 168 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 51598650 Common rplK 50S ribosomal protein L11 BG0394 249 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 51598861 Common pepD aminoacyl-histidine dipeptidase BG0621 66 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 51598469 Pathogen - hypothetical protein BG0210 1 None None None 51598547 Pathogen flbA flagellar protein BG0290 1 None None None 51598714 Common - hypothetical protein BG0467 5 None None None 51598942 Common - phosphomevalonate kinase, putative BG0710 5 COG3890 ERG8, Phosphomevalonate kinase Lipid metabolism 51598790 Common - hypothetical protein BG0549 140 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 51598463 Common - hemolysin, putative BG0202 221 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 51598292 Pathogen - hypothetical protein BG0029 1 COG1671 COG1671, Uncharacterized protein conserved in bacteria Function unknown 51598511 Common leuS leucyl-tRNA synthetase BG0254 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 51598580 Pathogen - hypothetical protein BG0323 1 None None None 51598478 Common pstA phosphate ABC transporter, permease protein BG0220 227 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 51598551 Common fliF flagellar MS-ring protein BG0294 117 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 51598949 Common rpsP 30S ribosomal protein S16 BG0718 213 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 51598762 Pathogen - hypothetical protein BG0519 2 COG5401 COG5401, Spore germination protein General function prediction only 51598340 Common - ABC transporter, ATP-binding protein BG0078 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 51598799 Common polA DNA polymerase I BG0558 217 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 51598860 Common rep rep helicase, single-stranded DNA-dependent ATPase BG0620 231 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 51598450 Common rpmI 50S ribosomal protein L35 BG0188 5 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 51598484 Pathogen - hypothetical protein BG0226 1 COG2859 COG2859, Uncharacterized protein conserved in bacteria Function unknown 51598927 Common cheY-3 chemotaxis response regulator BG0695 217 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 51598287 Common - hypothetical protein BG0024 62 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 51598729 Pathogen - lipoprotein, putative BG0486 1 None None None 51598812 Common gnd 6-phosphogluconate dehydrogenase BG0571 183 COG0362 Gnd, 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 51598602 Common uvrD DNA helicase BG0345 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 51598681 Common - hypothetical protein BG0434 4 COG3613 COG3613, Nucleoside 2-deoxyribosyltransferase Nucleotide transport and metabolism 51598682 Common - hypothetical protein BG0435 207 COG0313 COG0313, Predicted methyltransferases General function prediction only 51598905 Pathogen - hypothetical protein BG0673 2 None None None 51598354 Common - V-type ATP synthase subunit I BG0092 32 COG1269 NtpI, Archaeal/vacuolar-type H+-ATPase subunit I Energy production and conversion 51598375 Common rplI 50S ribosomal protein L9 BG0113 215 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 51598688 Common spo0J stage 0 sporulation protein J BG0441 182 COG1475 Spo0J, Predicted transcriptional regulators Transcription 51598639 Common bmpA-1 basic membrane protein A BG0382 92 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 51598788 Common - hypothetical protein BG0547 10 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 51599064 Common dfp pantothenate metabolism flavoprotein BG0838 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 51598775 Pathogen - hypothetical protein BG0532 1 None None None 51598873 Common - beta-glucosidase, putative BG0638 171 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 51598353 Pathogen - V-type ATP synthase subunit K BG0091 2 None None None 51598457 Common - HemK family methylase, putative BG0195 213 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 51598630 Common - hypothetical protein BG0373 67 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 51598266 Pathogen - hypothetical protein BG0003 2 COG4284 COG4284, UDP-glucose pyrophosphorylase Carbohydrate transport and metabolism 51598648 Common rplJ 50S ribosomal protein L10 BG0392 203 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 51599093 Pathogen - lipoprotein, putative BG0867 1 None None None 51599076 Pathogen - hypothetical protein BG0850 1 None None None 51599049 Common mutS DNA mismatch repair protein BG0823 199 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 51599046 Common - hypothetical protein BG0820 6 None None None 51598594 Pathogen - P26 BG0337 3 None None None 51598846 Common - long-chain-fatty-acid CoA ligase BG0606 216 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 51598696 Common - putative inner membrane protein translocase component YidC BG0449 214 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 51599068 Common murC UDP-N-acetylmuramate--L-alanine ligase BG0842 207 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 51598837 Common - hypothetical protein BG0597 19 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 51598311 Common - hypothetical protein BG0049 38 COG1738 COG1738, Uncharacterized conserved protein Function unknown 51598703 Pathogen ptsH-1 phosphocarrier protein HPr BG0456 1 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 51598769 Common trxB thioredoxin reductase BG0526 249 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 51598641 Common bmpC basic membrane protein C BG0385 81 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 51598739 Common rpsC 30S ribosomal protein S3 BG0496 248 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 51599034 Pathogen - hypothetical protein BG0807 3 COG1316 LytR, Transcriptional regulator Transcription 51599004 Common - ABC transporter, ATP-binding protein BG0776 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 51598317 Common pgk phosphoglycerate kinase BG0055 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 51598324 Common - hypothetical protein BG0062 32 COG2815 COG2815, Uncharacterized protein conserved in bacteria Function unknown 51598366 Common - hypothetical protein BG0104 17 COG2236 COG2236, Predicted phosphoribosyltransferases General function prediction only 51598692 Common dnaN DNA polymerase III, subunit beta BG0445 199 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 51598378 Pathogen rpsF 30S ribosomal protein S6 BG0116 4 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 51598278 Common udk uridine kinase BG0015 80 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 51598655 Pathogen - lipoprotein, putative BG0401 2 None None None 51598301 Pathogen - hypothetical protein BG0038 1 None None None 51598631 Common pfs-1 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative BG0374 90 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 51599074 Pathogen - hypothetical protein BG0848 1 None None None 51598856 Pathogen - membrane-associated protein p66 BG0616 1 None None None 51598986 Common - hypothetical protein BG0756 239 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 51598593 Common oppF oligopeptide ABC transporter, ATP-binding protein BG0336 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 51598909 Pathogen - hypothetical protein BG0677 3 None None None 51598814 Pathogen - hypothetical protein BG0573 1 None None None 51598555 Common hslU ATP-dependent protease ATP-binding subunit BG0298 210 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 51598308 Common rnhB ribonuclease H BG0045 202 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 51598758 Common rplQ 50S ribosomal protein L17 BG0515 215 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 51598778 Pathogen - hypothetical protein BG0535 1 None None None 51598998 Common oppB-2 oligopeptide ABC transporter, permease protein BG0770 196 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 51598291 Pathogen - lipoprotein, putative BG0028 1 None None None 51598520 Pathogen - hypothetical protein BG0263 1 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 51598656 Common - hypothetical protein BG0402 5 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 51598735 Common rplW 50S ribosomal protein L23 BG0492 184 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 51598962 Common - hypothetical protein BG0732 185 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 51598490 Common rpmE2 50S ribosomal protein L31 type B BG0232 153 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 51598570 Pathogen - hypothetical protein BG0313 3 None None None 51598544 Common flgD flagellar basal body rod modification protein BG0287 95 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 51599090 Pathogen - hypothetical protein BG0864 1 None None None 51598971 Common mreB-2 rod shape-determining protein BG0741 205 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 51598403 Common acrB acriflavine resistance protein BG0141 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 51598660 Pathogen - hypothetical protein BG0406 2 COG5497 COG5497, Predicted secreted protein Function unknown 51598969 Common - hypothetical protein BG0739 5 None None None 51598945 Common napA-2 neutrophil activating protein BG0714 92 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 51598563 Common ftsW cell division protein BG0306 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 51598338 Common - hypothetical protein BG0076 4 None None None 51598827 Pathogen - hypothetical protein BG0587 1 None None None 51598706 Common - chromate transport protein, putative BG0459 4 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 51598348 Common - hypothetical protein BG0086 187 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 51599027 Common - hypothetical protein BG0800 15 COG4731 COG4731, Uncharacterized protein conserved in bacteria Function unknown 51599087 Common uvrB excinuclease ABC subunit B BG0861 231 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 51598989 Common valS valyl-tRNA synthetase BG0759 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 51599041 Pathogen - hypothetical protein BG0815 1 None None None 51598926 Common cheX chemotaxis operon protein BG0694 20 COG1406 COG1406, Predicted inhibitor of MCP methylation, homolog of CheC Cell motility and secretion 51598948 Common ffh signal recognition particle protein BG0717 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 51598452 Pathogen - hypothetical protein BG0190 1 None None None 51598286 Common ruvA Holliday junction DNA helicase BG0023 169 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 51598383 Common - undecaprenyl diphosphate synthase BG0121 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 51598564 Common mraY phospho-N-acetylmuramoyl-pentapeptide- transferase BG0307 220 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 51599002 Common - hypothetical protein BG0774 14 COG3225 GldG, ABC-type uncharacterized transport system involved in gliding motility, auxiliary component Cell motility and secretion 51598359 Pathogen - V-type ATP synthase subunit E BG0097 3 COG1390 NtpE, Archaeal/vacuolar-type H+-ATPase subunit E Energy production and conversion 51598327 Pathogen - hypothetical protein BG0065 1 None None None 51599073 Pathogen - hypothetical protein BG0847 1 None None None 51598640 Common bmpA-2 basic membrane protein A BG0384 101 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 51598554 Common flgB flagellar basal body rod protein FlgB BG0297 64 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 51599026 Common flhO flagellar hook-basal body complex protein BG0799 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 51598783 Pathogen - hypothetical protein BG0540 1 None None None 51599086 Common cpsG phosphomannomutase BG0860 195 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 51598679 Common mag 3-methyladenine DNA glycosylase BG0429 82 COG2094 Mpg, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 51598764 Pathogen - hypothetical protein BG0521 2 COG3480 SdrC, Predicted secreted protein containing a PDZ domain Signal transduction mechanisms 51598267 Common femD phosphoglucomutase BG0004 35 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 51598777 Pathogen - hypothetical protein BG0534 1 None None None 51598834 Common - carboxypeptidase, putative BG0594 38 COG1876 VanY, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 51598939 Common - isopentenyl pyrophosphate isomerase BG0707 91 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 51598713 Common uvrC excinuclease ABC, subunit C BG0466 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 51598483 Common pgl 6-phosphogluconolactonase BG0225 35 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 51599053 Common infB translation initiation factor IF-2 BG0827 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 51598826 Common pyrG CTP synthetase BG0586 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 51598752 Common rplO 50S ribosomal protein L15 BG0509 216 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 51598771 Common dnaJ-1 heat shock protein BG0528 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 51598360 Pathogen - hypothetical protein BG0098 1 None None None 51599081 Common sbcC exonuclease SbcC BG0855 124 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 51598638 Common bmpB-1 basic membrane protein B BG0381 90 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 51598751 Pathogen rpmD ribosomal protein L30 BG0508 1 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 51598293 Pathogen lepB-1 signal peptidase I BG0030 1 None None None 51598513 Common lon-1 ATP-dependent protease LA BG0256 206 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 51598863 Common clpP-1 ATP-dependent Clp protease proteolytic component BG0627 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 51598875 Common ackA acetate kinase BG0641 162 COG0282 ackA, Acetate kinase Energy production and conversion 51598352 Pathogen - hypothetical protein BG0090 1 None None None 51598970 Common pbp-2 penicillin-binding protein BG0740 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 51599032 Common obgE GTPase ObgE BG0805 249 COG0536 Obg, Predicted GTPase General function prediction only 51598879 Common - small primase-like protein BG0646 21 COG1658 COG1658, Small primase-like proteins (Toprim domain) DNA replication, recombination, and repair 51598872 Common - hypothetical protein BG0637 86 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 51598448 Pathogen - hypothetical protein BG0186 2 None None None 51598712 Pathogen - hypothetical protein BG0465 1 None None None 51598390 Pathogen - hypothetical protein BG0128 1 None None None 51598616 Common ctp carboxyl-terminal protease BG0359 185 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 51598793 Common - hypothetical protein BG0552 7 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 51598991 Common - hypothetical protein BG0761 82 COG4121 COG4121, Uncharacterized conserved protein Function unknown 51598802 Common cheY-1 chemotaxis response regulator BG0561 212 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 51598495 Pathogen - hypothetical protein BG0237 1 None None None 51598763 Common engA GTP-binding protein EngA BG0520 228 COG1160 COG1160, Predicted GTPases General function prediction only 51598506 Common - hypothetical protein BG0248 188 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 51598607 Pathogen - hypothetical protein BG0350 1 None None None 51598724 Common - hypothetical protein BG0481 126 COG0327 COG0327, Uncharacterized conserved protein Function unknown 51598845 Common - hypothetical protein BG0605 2 None None None 51598471 Common lmp1 surface-located membrane protein 1 BG0212 124 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 51598290 Pathogen - hypothetical protein BG0027 2 None None None 51598815 Pathogen - hypothetical protein BG0574 1 None None None 51598367 Common htrA periplasmic serine protease DO BG0105 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 51598466 Common - hypothetical protein BG0207 10 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 51598959 Common papS polynucleotide adenylyltransferase BG0728 214 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 51598459 Pathogen - hypothetical protein BG0197 1 None None None 51598740 Common rplP 50S ribosomal protein L16 BG0497 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 51598736 Common rplB 50S ribosomal protein L2 BG0493 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 51598271 Common - hypothetical protein BG0008 67 COG1624 COG1624, Uncharacterized conserved protein Function unknown 161898744 Common secD preprotein translocase subunit SecD BG0675 217 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 51598433 Common - hypothetical protein BG0171 21 None None None 51598888 Common recC exodeoxyribonuclease V, gamma chain BG0656 30 COG1330 RecC, Exonuclease V gamma subunit DNA replication, recombination, and repair 51598912 Common rpi ribose 5-phosphate isomerase BG0680 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 51598633 Common - S-ribosylhomocysteinase BG0376 55 COG1854 LuxS, LuxS protein involved in autoinducer AI2 synthesis Signal transduction mechanisms 51598300 Common plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase BG0037 143 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 51599015 Common - hypothetical protein BG0788 82 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 51598890 Common zwf glucose-6-phosphate 1-dehydrogenase BG0658 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 51598987 Common rlpA rare lipoprotein A BG0757 136 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 51599050 Common - competence protein F, putative BG0824 17 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 51598804 Common - hypothetical protein BG0563 44 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 51598957 Common - acyl carrier protein BG0726 189 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 51598539 Pathogen fliL flagellar basal body-associated protein FliL BG0282 3 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 51598693 Pathogen - hypothetical protein BG0446 1 None None None 51598380 Common yplQ hemolysin III BG0118 117 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 51598318 Common gap glyceraldehyde 3-phosphate dehydrogenase BG0056 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 51598281 Common - hypothetical protein BG0018 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 51599061 Common tgt tRNA-guanine transglycosylase BG0835 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 51598325 Common fmt methionyl-tRNA formyltransferase BG0063 222 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 51598810 Common crr glucose-specific PTS system component BG0569 60 COG2190 NagE, Phosphotransferase system IIA components Carbohydrate transport and metabolism 51598855 Common - DnaJ domain containing protein BG0615 126 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 51598844 Pathogen - competence locus E, putative BG0604 2 None None None 51598654 Pathogen - hypothetical protein BG0400 2 None None None 51598972 Common thrZ threonyl-tRNA synthetase BG0742 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 51598960 Pathogen - hypothetical protein BG0729 1 None None None 51598901 Common - hydrolase, alpha/beta fold family BG0669 22 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 51599075 Common - hypothetical protein BG0849 18 COG4632 EpsL, Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase Carbohydrate transport and metabolism 51598582 Pathogen - hypothetical protein BG0325 1 None None None 51599033 Common - hypothetical protein BG0806 169 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 51598932 Common mglA-2 ribose/galactose ABC transporter, ATP-binding protein BG0700 249 COG3845 COG3845, ABC-type uncharacterized transport systems, ATPase components General function prediction only 51598500 Common dck deoxyguanosine/deoxyadenosine kinase(I) subunit 2 BG0242 40 COG1428 COG1428, Deoxynucleoside kinases Nucleotide transport and metabolism 51598967 Common mreB-1 rod shape-determining protein BG0737 236 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 51598952 Common trmD tRNA (guanine-N(1)-)-methyltransferase BG0721 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 51598337 Common ftsY signal recognition particle-docking protein FtsY BG0075 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 51598347 Pathogen - hypothetical protein BG0085 1 None None None 51599055 Common truB tRNA pseudouridine 55 synthase BG0829 243 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 51598432 Common - hypothetical protein BG0170 23 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 51598715 Common - hypothetical protein BG0468 11 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 51598925 Common cheW-3 purine-binding chemotaxis protein BG0693 128 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 51598543 Common flgE flagellar hook protein FlgE BG0286 126 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 51598913 Common gpmA phosphoglycerate mutase BG0681 164 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 51598609 Pathogen - hypothetical protein BG0352 2 None None None 51598571 Common - hypothetical protein BG0314 237 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 51598370 Common nusB transcription antitermination protein NusB BG0108 157 COG0781 NusB, Transcription termination factor Transcription 51598402 Pathogen - hypothetical protein BG0140 1 None None None 51598915 Common era GTP-binding protein Era BG0683 215 COG1159 Era, GTPase General function prediction only 51598843 Common ksgA dimethyladenosine transferase BG0603 247 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 51598950 Common - hypothetical protein BG0719 28 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 51599089 Common - hypothetical protein BG0863 5 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 51598661 Pathogen - hypothetical protein BG0407 1 None None None 51599066 Common - hypothetical protein BG0840 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 51598835 Common - MATE efflux family protein BG0595 120 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 51598447 Common - hypothetical protein BG0185 166 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 51598874 Common thiJ 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein BG0640 121 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 51598686 Common - chromosome segregation protein, putative BG0439 204 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 51598737 Common rpsS 30S ribosomal protein S19 BG0494 246 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 51598514 Common recJ single-stranded-DNA-specific exonuclease BG0257 196 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 51598694 Common rpmH 50S ribosomal protein L34 BG0447 189 None None None 51598829 Pathogen - hypothetical protein BG0589 1 None None None 51598496 Common - translation-associated GTPase BG0238 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 51598361 Common - recombination and DNA strand exchange inhibitor protein BG0099 201 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 51598878 Common - N-acetylmuramoyl-L-alanine amidase, putative BG0644 83 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 51598351 Common lepA GTP-binding protein LepA BG0089 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 51598532 Common flhB flagellar biosynthesis protein FlhB BG0275 130 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 51598617 Common ylxH-2 minD-related ATP-binding protein BG0360 207 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 51598298 Common parC DNA topoisomerase IV subunit A BG0035 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 51598509 Common - phosphatidyltransferase BG0251 45 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 51599091 Pathogen - hypothetical protein BG0865 1 None None None 51598451 Common infC translation initiation factor IF-3 BG0189 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 51598990 Pathogen - hypothetical protein BG0760 1 None None None 51598782 Common - hypothetical protein BG0539 10 None None None 51598273 Common - holo-acyl-carrier protein synthase, putative BG0010 49 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 51598610 Pathogen - hypothetical protein BG0353 3 None None None 51598326 Common def polypeptide deformylase BG0064 215 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 51598792 Pathogen - hypothetical protein BG0551 1 None None None 51599080 Common sbcD exonuclease SbcD BG0854 94 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 51598368 Common map methionine aminopeptidase BG0106 249 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 51598747 Common rpsH 30S ribosomal protein S8 BG0504 233 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 51598549 Common fliH flagellar assembly protein H BG0292 57 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 51598731 Common rpsJ 30S ribosomal protein S10 BG0488 239 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 51598567 Common - hypothetical protein BG0310 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 51598446 Common - hypothetical protein BG0184 51 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 51598770 Common yacO rRNA methylase BG0527 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 51598396 Common greA transcript cleavage factor/unknown domain fusion protein BG0134 202 COG1747 COG1747, Uncharacterized N-terminal domain of the transcription elongation factor GreA Function unknown 51598672 Common cheB-1 protein-glutamate methylesterase BG0418 150 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 51598280 Common - hypothetical protein BG0017 47 COG1284 COG1284, Uncharacterized conserved protein Function unknown 51598382 Common - phosphatidate cytidylyltransferase BG0120 215 COG4589 COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase General function prediction only 51598270 Common - hypothetical protein BG0007 12 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 51598465 Common hflC Lambda CII stability-governing protein BG0204 120 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 51598398 Common - hypothetical protein BG0136 3 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 51598472 Common mutL DNA mismatch repair protein BG0213 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 51598759 Common - hypothetical protein BG0516 79 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 51598391 Common rpsA 30S ribosomal protein S1 BG0129 212 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 51598801 Common flaJ flagellar protein BG0560 34 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 51598862 Common tig trigger factor BG0626 209 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 51598486 Common - tRNA-dihydrouridine synthase A BG0228 198 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 51598608 Common rpmB 50S ribosomal protein L28 BG0351 93 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 51598753 Common secY preprotein translocase subunit SecY BG0510 229 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 51598505 Common - hypothetical protein BG0247 61 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 51598620 Common mgsA methylglyoxal synthase BG0363 88 COG1803 MgsA, Methylglyoxal synthase Carbohydrate transport and metabolism