Yersinia pseudotuberculosis IP 32953 plasmid pYV, complete sequence NC_006153 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 51593849 Common - putative transposase remnant pYV0003 89 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 51593909 Common - type III secretion system ATPase pYV0067 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 51593919 Pathogen - hypothetical protein pYV0077 1 None None None 51593881 Common - putative transposase pYV0039 14 None None None 51593874 Pathogen - hypothetical protein pYV0030 1 None None None 51593931 Pathogen - yscM, lcrQ; putative type III secretion regulatory pYV0089 2 None None None 51593923 Pathogen - yscE; putative type III secretion protein pYV0081 1 None None None 51593937 Common - putative transposase pYV0095 127 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 51593861 Common - putative resolvase pYV0017 146 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 51593904 Pathogen - yscX; putative type III secretion protein pYV0062 5 None None None 51593868 Pathogen - sycE, yerA; putative yopE chaperone pYV0024 3 None None None 51593938 Pathogen - transposase, IS630 family pYV0096 6 None None None 51593894 Common - hypothetical protein pYV0052 2 None None None 51593924 Common - yscF; putative type III secretion protein pYV0082 6 None None None 51593912 Common - type III secretion system protein pYV0070 21 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 51593890 Pathogen - hypothetical protein pYV0048 1 None None None 51593859 Common - hypothetical protein pYV0013 34 COG5295 Hia, Autotransporter adhesin Intracellular trafficking and secretion / Extracellular structures 51593852 Pathogen - hypothetical protein pYV0006 1 None None None 51593863 Common - putative transposase pYV0019 130 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 51593876 Common - sopA; putative plasmid partitioning transcription repressor pYV0032 198 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 51593892 Pathogen - hypothetical protein pYV0050 1 None None None 51593910 Pathogen - yscO; putative type III secretion protein pYV0068 5 None None None 51593902 Common - lcrD, yscV; putative membrane-bound Yop protein pYV0060 127 COG4789 EscV, Type III secretory pathway, component EscV Intracellular trafficking and secretion 51593933 Common - putative transposase pYV0091 57 None None None 51593850 Pathogen - hypothetical protein pYV0004 2 None None None 51593905 Pathogen - sycN; putative type III secretion protein pYV0063 5 None None None 51593915 Common - yscT; putative type III secretion protein pYV0073 22 COG4791 EscT, Type III secretory pathway, component EscT Intracellular trafficking and secretion 51593865 Common - putative transposase pYV0021 89 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 51593885 Common - possible transposase remnant pYV0043 2 None None None 51593899 Pathogen - lcrV; putative V antigen, antihost protein/regulator pYV0057 5 None None None 51593889 Common - yopM; putative targeted effector protein pYV0047 44 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 51593857 Common - possible transposase remname pYV0011 21 None None None 51593935 Common - putative transposase pYV0093 36 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 51593871 Common - hypothetical protein pYV0027 22 COG3609 COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain Transcription 51593926 Pathogen - yscH, yopR, lcrP; putative type III secretion protein pYV0084 4 None None None 51593878 Common - putative transposase remnant pYV0034 24 None None None 51593900 Pathogen - lcrG; putative Yop regulator pYV0058 5 None None None 51593893 Common - hypothetical protein pYV0051 41 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 51593903 Pathogen - yscY; putative type III secretion protein pYV0061 5 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 51593860 Common - tnpA; putative transposase protein pYV0016 54 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 51593883 Common - yop targeted effector yopT pYV0041 6 None None None 51593887 Common - hypothetical protein pYV0045 2 None None None 51593855 Common - hyothetical protein pYV0009 65 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 51593920 Pathogen - hypothetical protein pYV0078 5 None None None 51593930 Common - type III secretion system protein pYV0088 46 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 51593941 Pathogen - hypothetical protein pYV0099 1 None None None 51593917 Pathogen - virG; putative Yop targeting lipoprotein pYV0075 4 None None None 51593847 Common - ypkA; putative targeted effector protein kinase pYV0001 5 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 51593873 Common - hypothetical protein pYV0029 5 None None None 51593897 Pathogen - yopB; putative Yop targeting protein pYV0055 5 COG5613 COG5613, Uncharacterized conserved protein Function unknown 51593913 Common - type III secretion system protein pYV0071 128 COG4790 EscR, Type III secretory pathway, component EscR Intracellular trafficking and secretion 51593940 Pathogen - yopP, yopJ; putative targeted effector protein pYV0098 7 None None None 51593891 Pathogen - hypothetical protein pYV0049 1 None None None 51593922 Common - yscD; putative type III secretion protein pYV0080 8 None None None 51593901 Pathogen - lcrR; hypothetical protein lcrR pYV0059 5 None None None 51593882 Pathogen - yop targeting protein yopK, yopQ pYV0040 1 None None None 51593848 Pathogen - hypothetical protein pYV0002 3 None None None 51593853 Pathogen - repB, repA2, copB; putative replication transcriptional regulator pYV0007 5 None None None 51593867 Common - possible transposase remnant pYV0023 98 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 51593895 Pathogen - hypothetical protein pYV0053 1 None None None 51593929 Pathogen - yscK; putative type III secretion protein pYV0087 5 None None None 51593875 Common - sopB; putative plasmid partitioning control protein pYV0031 20 COG1475 Spo0J, Predicted transcriptional regulators Transcription 51593879 Common - hypothetical protein pYV0035 115 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 51593907 Common - yopN, lcrE; putative membrane-bound Yop targeting protein pYV0065 7 None None None 51593932 Common - putative transposase pYV0090 54 None None None 51593939 Pathogen - hypothetical protein pYV0097 1 None None None 51593851 Common - repA, repA1; putative replication initiation protein pYV0005 8 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 51593869 Pathogen - putative outer membrane virulence protein pYV0025 3 None None None 51593925 Pathogen - yscG; putative type III secretion protein pYV0083 5 None None None 51593858 Pathogen - hypothetical protein pYV0012 1 None None None 51593880 Common - hypothetical protein pYV0036 31 None None None 51593862 Common - putative transposase pYV0018 64 None None None 51593934 Common - putative transposase pYV0092 35 None None None 51593916 Common - yscU; putative type III secretion protein pYV0074 129 COG4792 EscU, Type III secretory pathway, component EscU Intracellular trafficking and secretion 51593877 Pathogen - hypothetical protein pYV0033 1 None None None 51593898 Common - lcrH, sycD; low calcium response protein H pYV0056 19 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 51593914 Common - yscS; putative type III secretion protein pYV0072 39 COG4794 EscS, Type III secretory pathway, component EscS Intracellular trafficking and secretion 51593870 Common - hypothetical protein pYV0026 24 COG3668 ParE, Plasmid stabilization system protein General function prediction only 51593886 Pathogen - hypothetical protein pYV0044 1 None None None 51593864 Pathogen - sycH; putative yopH targeting protein pYV0020 2 None None None 51593908 Pathogen - hypothetical protein pYV0066 1 None None None 113911686 Pathogen - yscP; putative type III secretion protein pYV0069 4 None None None 51593856 Common - hypothetical protein pYV0010 15 None None None 51593936 Pathogen - yopH; putative protein-tyrosine phosphatase Yop effector pYV0094 4 COG5599 PTP2, Protein tyrosine phosphatase Signal transduction mechanisms 51593896 Pathogen - yopD; putative Yop negative regulation/targeting component pYV0054 5 None None None 51593928 Common - yscJ, ylpB; putative type III secretion lipoprotein pYV0086 42 COG4669 EscJ, Type III secretory pathway, lipoprotein EscJ Intracellular trafficking and secretion 51593927 Pathogen - yscI, lcrO; putative type III secretion protein pYV0085 5 None None None 51593872 Common - putative transposase remnant pYV0028 7 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 51593918 Common - lcrF, virF; putative thermoregulatory protein pYV0076 114 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 51593884 Pathogen - yopT chaperone pYV0042 3 None None None 51593854 Common - possible transposase remnant pYV0008 101 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 51593866 Common - putative transposase pYV0022 84 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 51593888 Common - putative transposase remnant pYV0046 54 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 51593921 Common - yscC; putative type III secretion protein pYV0079 139 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 51593906 Pathogen - tyeA; putative Yop secretion and targeting protein pYV0064 5 None None None