Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, complete sequence NC_005815 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 45478688 Pathogen - hypothetical protein YP_pMT104 5 None None None 45478666 Common - putative integrase YP_pMT081 65 COG0582 XerC, Integrase DNA replication, recombination, and repair 45478695 Pathogen - hypothetical protein YP_pMT111 1 None None None 45478643 Common repA putative replication protein A YP_pMT057 6 None None None 45478607 Pathogen - hypothetical protein YP_pMT019 2 None None None 45478626 Pathogen - hypothetical protein YP_pMT038 2 None None None 45478657 Common - hypothetical protein YP_pMT071 13 None None None 45478653 Pathogen - hypothetical protein YP_pMT067 2 None None None 45478632 Pathogen - hypothetical protein YP_pMT045 2 None None None 45478591 Common - phage lambda-related tail assembly protein G YP_pMT003 16 COG5525 COG5525, Bacteriophage tail assembly protein General function prediction only 45478702 Pathogen - hypothetical protein YP_pMT118 1 None None None 45478705 Pathogen - hypothetical protein YP_pMT121 3 None None None 45478676 Pathogen - hypothetical protein YP_pMT091 1 None None None 45478605 Pathogen - hypothetical protein YP_pMT017 2 None None None 45478613 Common - hypothetical protein YP_pMT025 17 COG1783 XtmB, Phage terminase large subunit General function prediction only 45478609 Common - hypothetical protein YP_pMT021 23 COG5492 COG5492, Bacterial surface proteins containing Ig-like domains Cell motility and secretion 45478646 Pathogen - hypothetical protein YP_pMT060 2 None None None 45478677 Pathogen - hypothetical protein YP_pMT092 2 None None None 45478668 Common caf1A putative F1 capsule anchoring protein YP_pMT083 36 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 45478659 Common - putative transposase YP_pMT074 82 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 45478604 Pathogen - hypothetical protein YP_pMT016 2 None None None 45478628 Pathogen - hypothetical protein YP_pMT041 1 None None None 45478593 Common - phage lambda-related protein YP_pMT005 17 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 45478682 Common - hypothetical protein YP_pMT098 4 COG5338 COG5338, Uncharacterized protein conserved in bacteria Function unknown 45478698 Common - hypothetical protein YP_pMT114 15 None None None 45478630 Common tnp putative transposase YP_pMT043 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 45478655 Pathogen - hypothetical protein YP_pMT069 2 None None None 45478670 Common caf1R putative F1 operon positive regulatory protein YP_pMT085 22 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 45478707 Common - probable transposase YP_pMT123 10 None None None 45478615 Pathogen - hypothetical protein YP_pMT027 2 None None None 45478679 Common - transposase/IS protein YP_pMT095 100 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 45478611 Pathogen - hypothetical protein YP_pMT023 6 None None None 45478622 Pathogen - hypothetical protein YP_pMT034 2 None None None 45478672 Pathogen - hypothetical protein YP_pMT087 2 None None None 45478648 Pathogen - hypothetical protein YP_pMT062 2 None None None 45478602 Pathogen - hypothetical protein YP_pMT014 2 None None None 45478662 Common - putative porphyrin biosynthetic protein YP_pMT077 47 COG4547 CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) Coenzyme metabolism 45478669 Common caf1M putative F1 chaperone protein YP_pMT084 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 45478656 Pathogen - hypothetical protein YP_pMT070 2 None None None 45478692 Pathogen - hypothetical protein YP_pMT108 1 None None None 45478650 Common - putative lipoprotein YP_pMT064 25 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 45478614 Pathogen - hypothetical protein YP_pMT026 2 None None None 45478618 Common - putative ABC transporter ATP-binding protein YP_pMT030 195 COG2401 COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain General function prediction only 45478598 Common - putative phage tail protein YP_pMT010 14 COG4672 gp18, Phage-related protein Function unknown 45478636 Pathogen - hypothetical protein YP_pMT049 2 None None None 45478629 Pathogen - ABC-type transport protein uup homolog YP_pMT042 2 None None None 45478624 Pathogen - putative transcriptional regulator YP_pMT036 2 None None None 45478639 Common - putative exonuclease subunit 1 YP_pMT052 4 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 45478684 Common - putative antirestriction protein YP_pMT100 16 COG4734 ArdA, Antirestriction protein General function prediction only 45478708 Common - hypothetical protein YP_pMT124 11 COG5464 COG5464, Uncharacterized conserved protein Function unknown 45478685 Pathogen - hypothetical protein YP_pMT101 1 None None None 45478664 Pathogen - hypothetical protein YP_pMT079 1 None None None 45478652 Common - putative recombinase YP_pMT066 221 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 45478680 Common - transposase YP_pMT096 82 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 45478700 Common - putative resolvase YP_pMT116 87 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 45478687 Pathogen - hypothetical protein YP_pMT103 5 None None None 45478625 Pathogen - hypothetical protein YP_pMT037 2 None None None 45478637 Common - putative exonuclease subunit 2 YP_pMT050 27 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 45478693 Common - putative DNA-binding protein YP_pMT109 6 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 45478634 Common - ribonucleotide-diphosphate reductase subunit alpha YP_pMT047 205 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 45478631 Pathogen - hypothetical protein YP_pMT044 2 None None None 45478673 Pathogen - hypothetical protein YP_pMT088 2 None None None 45478592 Pathogen - hypothetical protein YP_pMT004 1 None None None 45478697 Common parA putative partitioning protein A YP_pMT113 127 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 45478704 Common - hypothetical protein YP_pMT120 83 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 45478665 Common - hypothetical protein YP_pMT080 3 None None None 45478627 Pathogen - hypothetical protein YP_pMT040 2 None None None 45478608 Pathogen - hypothetical protein YP_pMT020 2 None None None 45478642 Pathogen - hypothetical protein YP_pMT055 1 None None None 45478610 Common - hypothetical protein YP_pMT022 8 None None None 45478658 Pathogen - hypothetical protein YP_pMT072 2 None None None 45478594 Pathogen - hypothetical protein YP_pMT006 3 None None None 45478681 Common - putative DNA-binding protein YP_pMT097 111 COG1475 Spo0J, Predicted transcriptional regulators Transcription 45478690 Pathogen - hypothetical protein YP_pMT106 1 None None None 45478706 Pathogen - hypothetical protein YP_pMT122 3 None None None 45478678 Pathogen - hypothetical protein YP_pMT093 1 None None None 45478599 Common - putative phage tail protein YP_pMT011 12 COG4718 COG4718, Phage-related protein Function unknown 45478654 Common - hypothetical protein YP_pMT068 191 COG0258 Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair 45478667 Pathogen caf1 F1 capsule antigen YP_pMT082 1 None None None 45478675 Common - putative DNA ligase YP_pMT090 5 COG1793 CDC9, ATP-dependent DNA ligase DNA replication, recombination, and repair 45478616 Common - hypothetical protein YP_pMT028 3 COG2401 COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain General function prediction only 45478699 Common - hypothetical protein YP_pMT115 9 None None None 45478644 Pathogen - hypothetical protein YP_pMT058 2 None None None 45478606 Pathogen - hypothetical protein YP_pMT018 2 None None None 45478696 Common parB putative partitioning protein B YP_pMT112 11 COG1475 Spo0J, Predicted transcriptional regulators Transcription 45478621 Common - hypothetical protein YP_pMT033 95 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 45478649 Common - hypothetical protein YP_pMT063 5 None None None 45478645 Pathogen - hypothetical protein YP_pMT059 2 None None None 45478620 Common - hypothetical protein YP_pMT032 112 COG1475 Spo0J, Predicted transcriptional regulators Transcription 45478596 Common - putative phage tail protein YP_pMT008 13 COG4723 COG4723, Phage-related protein, tail component Function unknown 45478617 Pathogen - hypothetical protein YP_pMT029 2 None None None 45478638 Pathogen - hypothetical protein YP_pMT051 2 None None None 45478701 Common - hypothetical protein YP_pMT117 37 COG5464 COG5464, Uncharacterized conserved protein Function unknown 45478590 Common - transposase/IS protein YP_pMT002 100 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 45478623 Common - putative lipoprotein YP_pMT035 6 None None None 45478660 Common - transposase/IS protein YP_pMT075 100 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 45478683 Pathogen - hypothetical protein YP_pMT099 1 None None None 45478595 Common - phage lambda-related host specificity protein J YP_pMT007 73 COG4733 COG4733, Phage-related protein, tail component Function unknown 45478671 Pathogen - putative C-type natriuretic protein YP_pMT086 2 None None None 45478661 Common - putative porphyrin biosynthetic protein YP_pMT076 54 COG0714 COG0714, MoxR-like ATPases General function prediction only 45478691 Pathogen - hypothetical protein YP_pMT107 1 None None None 45478619 Common - hypothetical protein YP_pMT031 42 COG1475 Spo0J, Predicted transcriptional regulators Transcription 45478647 Pathogen - hypothetical protein YP_pMT061 2 None None None 45478603 Common - hypothetical protein YP_pMT015 19 COG5492 COG5492, Bacterial surface proteins containing Ig-like domains Cell motility and secretion 45478710 Common - transposase YP_pMT126 88 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 45478686 Pathogen - hypothetical protein YP_pMT102 5 None None None 45478703 Pathogen ymt murine toxin YP_pMT119 3 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 45478651 Pathogen - hypothetical protein YP_pMT065 2 None None None 45478597 Common - putative phage tail protein YP_pMT009 13 COG1310 COG1310, Predicted metal-dependent protease of the PAD1/JAB1 superfamily General function prediction only 45478633 Common nrdB ribonucleotide-diphosphate reductase subunit beta YP_pMT046 152 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 45478694 Common - hypothetical protein YP_pMT110 5 None None None 45478709 Common - probable transposase YP_pMT125 89 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 45478612 Common - hypothetical protein YP_pMT024 5 None None None 45478674 Pathogen - hypothetical protein YP_pMT089 2 None None None 45478589 Common - putative transposase YP_pMT001 82 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 45478635 Pathogen - hypothetical protein YP_pMT048 2 None None None 45478689 Common - putative DNA methylase YP_pMT105 117 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 45478641 Common - putative periplasmic protein YP_pMT054 69 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 45478600 Common - hypothetical protein YP_pMT012 25 COG3941 COG3941, Mu-like prophage protein General function prediction only 45478601 Pathogen - hypothetical protein YP_pMT013 2 None None None 45478663 Pathogen - hypothetical protein YP_pMT078 2 None None None 45478640 Pathogen - hypothetical protein YP_pMT053 1 None None None