Bdellovibrio bacteriovorus HD100, complete genome NC_005363 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 161611323 Common obgE GTPase ObgE Bd3847 249 COG0536 Obg, Predicted GTPase General function prediction only 42523493 Common - hypothetical protein Bd2018 62 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 42523386 Pathogen - hypothetical protein Bd1907 1 None None None 42524668 Pathogen - hypothetical protein Bd3296 1 None None None 42523416 Common sufS Cysteine desulphurase involved in Fe-S clsuter assembly Bd1938 239 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 42524464 Common cyaC probable adenylate cyclase Bd3072 72 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 42524023 Common - transcriptional regulator Crp/FNR family Bd2602 134 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42523019 Common pilS pilS sensor protein Bd1512 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42522606 Common pgk phosphoglycerate kinase Bd1050 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 42522696 Common katA hypothetical protein Bd1154 127 COG0753 KatE, Catalase Inorganic ion transport and metabolism 42522942 Common - putative hydrolase Bd1426 65 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 42524446 Pathogen - hypothetical protein Bd3054 1 COG5406 COG5406, Nucleosome binding factor SPN, SPT16 subunit Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics 42521989 Pathogen - hypothetical protein Bd0375 1 None None None 42522117 Common recA recombinase A Bd0512 229 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 42523604 Pathogen - hypothetical protein Bd2137 1 None None None 42524038 Common pcm L-isoaspartyl protein carboxyl methyltransferase Bd2618 151 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 42524125 Common ychF translation-associated GTPase Bd2707 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 42523012 Common atoC Acetoacetate metabolism regulatory protein atoC Bd1505 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42524780 Common yfhD putative periplasmic binding transport protein Bd3421 114 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 42522753 Common dppD ABC-type dipeptide transport system, ATPase component Bd1221 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 42523159 Common pstC Permease protein of phosphate ABC transporter Bd1659 231 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 42521859 Common - anthranilate synthase component II Bd0234 119 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 42524364 Common rplE 50S ribosomal protein L5 Bd2964 247 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 42522959 Pathogen - hypothetical protein Bd1443 1 None None None 42524824 Common cheW purine-binding chemotaxis protein CheW Bd3471 130 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 42522432 Common phnC ABC-type phosphonate transport protein, ATP-binding Bd0860 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42521732 Common - GTP cyclohydrolase I Bd0087 145 COG0780 COG0780, Enzyme related to GTP cyclohydrolase I General function prediction only 42525158 Common polC DNA polymerase III alpha subunit Bd3834 193 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 42522040 Pathogen - hypothetical protein Bd0427 1 None None None 42524213 Common - hypothetical protein Bd2803 3 None None None 42524415 Common motB flagellar motor protein MotB Bd3020 144 COG1360 MotB, Flagellar motor protein Cell motility and secretion 42521994 Common ompA outer membrane protein A Bd0380 112 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 42524920 Common btuB outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23 Bd3571 105 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 42524715 Common groES chaperonin Bd3349 210 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 42524609 Common folA hypothetical protein Bd3231 148 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 42525072 Pathogen - hypothetical protein Bd3742 1 None None None 42524710 Common hag flagellin Bd3342 119 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 42523411 Common - putative ATPase/GTPase Bd1933 11 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 42523152 Pathogen - hypothetical protein Bd1651 1 None None None 42522043 Common ybiF putative transmembrane protein Bd0433 93 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 42522896 Common - hypothetical protein Bd1377 2 None None None 42522237 Common - hypothetical protein Bd0648 30 COG3193 GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol General function prediction only 42523226 Common - Lycopene cyclase Bd1730 17 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 42525020 Common - hypothetical protein Bd3683 150 COG1733 COG1733, Predicted transcriptional regulators Transcription 42522063 Pathogen - hypothetical protein Bd0454 1 None None None 42523815 Common - hypothetical protein Bd2369 3 None None None 42523432 Common glnD protein-P-II uridylyltransferase Bd1955 122 COG2844 GlnD, UTP:GlnB (protein PII) uridylyltransferase Posttranslational modification, protein turnover, chaperones 42522800 Pathogen - Transglycosylase associated protein Bd1276 1 COG2261 COG2261, Predicted membrane protein Function unknown 42523471 Common - hypothetical protein Bd1995 4 None None None 42522444 Common - probable hydrolytic enzyme Bd0873 136 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42525088 Common gshA putative glutamate--cysteine ligase Bd3760 27 None None None 42523350 Common rfbA glucose-1-phosphate thymidylyltransferase Bd1870 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 42523205 Common - putative DNA-binding protein Bd1709 20 COG1661 COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif General function prediction only 42523065 Pathogen - hypothetical protein Bd1558 1 None None None 42522688 Common - hypothetical protein Bd1146 2 None None None 42522729 Common sufA Scaffold protein for iron-sulfur cluster assembly. Bd1193 164 COG0316 IscA, Uncharacterized conserved protein Function unknown 42522509 Pathogen - hypothetical protein Bd0942 1 None None None 42524007 Common - hypothetical protein Bd2585 16 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 42522562 Common acrD acriflavin resistance protein Bd1001 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 42524617 Pathogen - hypothetical protein Bd3240 1 None None None 42521952 Pathogen - hypothetical protein Bd0330 1 None None None 42522965 Common - putative Phenylacetic acid degradation protein PAAI Bd1452 68 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 42522594 Pathogen secG Preprotein translocase subunit SecG Bd1036 1 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 42524451 Common - putative outer membrane protein Bd3059 8 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 42523565 Common - probable acetyl-CoA acetyltransferase Bd2095 179 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 42522079 Common - putative secreted protein Bd0471 23 COG1430 COG1430, Uncharacterized conserved protein Function unknown 42522257 Pathogen - hypothetical protein Bd0670 1 None None None 42521699 Pathogen - hypothetical protein Bd0051 1 None None None 42522305 Common rfaE ADP-heptose synthase Bd0720 144 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 42524264 Common aspA aspartate ammonia-lyase Bd2857 229 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 42522215 Common aspC aspartate aminotransferase Bd0624 236 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 42525112 Common cdsA Phosphatidate cytidylyltransferase Bd3786 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 42522825 Common - hypothetical protein Bd1303 60 COG2391 COG2391, Predicted transporter component General function prediction only 42522926 Pathogen - hypothetical protein Bd1409 1 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 42523470 Pathogen - hypothetical protein Bd1994 1 None None None 42522547 Pathogen - hypothetical protein Bd0986 1 COG4575 ElaB, Uncharacterized conserved protein Function unknown 42522311 Common - cell wall surface anchor family protein Bd0726 60 None None None 42523314 Pathogen - hypothetical protein Bd1829 1 None None None 42521796 Common mrcA penicillin-binding protein 1A Bd0160 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 42522789 Pathogen - metallo proteinase related protein Bd1265 1 COG1913 COG1913, Predicted Zn-dependent proteases General function prediction only 42521803 Common nlpD peptidase, M23/M37 family Bd0168 183 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 42522844 Common - Pseudouridine synthase Rlu family protein Bd1323 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 42522281 Common - hypothetical protein Bd0695 2 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 42523326 Common - hypothetical protein Bd1841 19 None None None 42523860 Common - Zinc carboxypeptidase-related protein Bd2418 16 None None None 42523719 Pathogen - hypothetical protein Bd2262 1 None None None 42524787 Common - Two-component sensor histidine kinase Bd3428 147 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 42523246 Common - putative multidrug efflux transporter Bd1753 140 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 42524239 Common cheR chemotaxis protein methyltransferase Bd2830 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 42524357 Common secY preprotein translocase subunit SecY Bd2955 218 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 42523514 Common - ABC polar amino acid transport system Bd2041 11 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42522852 Common - putative ABC transporter ATP-binding protein Bd1332 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42523504 Pathogen - hypothetical protein Bd2030 1 None None None 42524000 Pathogen - hypothetical protein Bd2577 1 None None None 42524218 Pathogen - hypothetical protein Bd2808 1 None None None 42523149 Common - putative ferredoxin Bd1647 20 None None None 42522735 Common cinA nucleotide-utilizing enzyme Bd1200 39 COG1058 CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA General function prediction only 42524640 Common - cell wall surface anchor family protein Bd3266 41 None None None 42522031 Common - hypothetical protein Bd0417 2 None None None 42522784 Pathogen - hypothetical protein Bd1259 1 None None None 42523962 Pathogen - hypothetical protein Bd2537 1 None None None 42521900 Pathogen - hypothetical protein Bd0277 1 None None None 42521836 Pathogen - hypothetical protein Bd0206 1 None None None 42524568 Common - putative methyltransferase Bd3186 52 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 42521739 Pathogen - hypothetical protein Bd0094 1 None None None 42523327 Pathogen - hypothetical protein Bd1842 1 None None None 42521746 Common cheY chemotaxis response regulator Bd0102 221 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 42523835 Common - cardiolipin synthetase Bd2389 146 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 42523754 Common spoIID stage II sporulation protein D Bd2303 46 COG2385 SpoIID, Sporulation protein and related proteins Cell division and chromosome partitioning 42524398 Common purH IMP cyclohydrolase Bd3002 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 42524142 Pathogen - hypothetical protein Bd2725 1 None None None 42521914 Common maiA maleylacetoacetate isomerase / glutathione S-transferase Bd0291 107 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 42522517 Common - UDP glucosamine N-acyltransferase Bd0950 165 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 42523838 Pathogen - Cell morphology protein Bd2392 2 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 42525167 Common - hypothetical protein Bd3844 4 None None None 42521881 Common - hypothetical protein Bd0256 2 None None None 42524482 Common - hypothetical protein Bd3093 25 None None None 42523772 Common - hypothetical protein Bd2323 41 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 42524149 Common - cell wall surface anchor family protein Bd2734 14 None None None 42523116 Common - putative molybdopterin oxidoreductase Bd1612 23 None None None 42525079 Common - hypothetical protein Bd3751 162 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42523671 Pathogen - hypothetical protein Bd2210 1 None None None 42522328 Pathogen - hypothetical protein Bd0745 1 None None None 42522556 Common - ABC transporter ATP-binding protein Bd0995 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42524620 Common - membrane-bound lytic murein transglycosylase, putative Bd3243 89 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 42522980 Common - 30S ribosomal protein S20 Bd1467 142 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 42524559 Pathogen - hypothetical protein Bd3176 1 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 42522070 Pathogen - hypothetical protein Bd0462 1 None None None 42522173 Common cheA histidine kinase Bd0578 149 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 42523301 Pathogen - hypothetical protein Bd1815 1 None None None 42523910 Pathogen - hypothetical protein Bd2477 1 None None None 42523216 Common - putative permease Bd1720 15 None None None 42522991 Common - TolR-like protein, putative Bd1480 7 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 42522199 Common hag flagellin Bd0606 118 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 42523020 Common pilR regulator protein pilR Bd1513 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42525135 Common sucD succinyl-CoA synthetase alpha chain Bd3811 208 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 42523938 Common cit methylcitrate synthase Bd2511 194 COG0372 GltA, Citrate synthase Energy production and conversion 42522104 Pathogen - hypothetical protein Bd0498 1 None None None 42523690 Common recJ single-strand DNA-specific exonuclease Bd2232 192 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 42524593 Common - cell division protein Bd3213 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 42523467 Common - putative auxin-regulated protein Bd1990 11 None None None 42522811 Common clpA ATP-dependent Clp protease subunit Bd1288 241 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 42521713 Pathogen - hypothetical protein Bd0067 1 None None None 42524092 Common - hypothetical protein Bd2674 12 COG1585 COG1585, Membrane protein implicated in regulation of membrane protease activity Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 42522895 Common - putative ribose ABC transporter Bd1376 56 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 42523994 Common selD selenide, water dikinase Bd2571 130 COG0709 SelD, Selenophosphate synthase Amino acid transport and metabolism 42524891 Common - probable phosphodiesterase/ alkaline phosphatase D Bd3539 9 COG3540 PhoD, Phosphodiesterase/alkaline phosphatase D Inorganic ion transport and metabolism 42522816 Pathogen - hypothetical protein Bd1293 1 None None None 42523991 Common pdxH pyridoxamine 5'-phosphate oxidase Bd2568 132 COG0259 PdxH, Pyridoxamine-phosphate oxidase Coenzyme metabolism 42522342 Common tonB tonB protein Bd0759 3 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42524885 Common - serine esterase Bd3533 75 COG0400 COG0400, Predicted esterase General function prediction only 42523370 Pathogen - hypothetical protein Bd1890 1 None None None 42521773 Common - transcription regulator homolog yacF Bd0136 210 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 42522910 Common - TonB-dependent siderophore receptor, putative Bd1392 90 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 42523701 Pathogen - hypothetical protein Bd2243 1 None None None 42522677 Pathogen - hypothetical protein Bd1129 1 None None None 42524929 Common - hypothetical protein Bd3581 2 None None None 42521864 Common rpsU 30S ribosomal protein S21 Bd0239 89 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 42524543 Common - hypothetical protein Bd3159 19 None None None 42524014 Common - pyruvate formate-lyase activating enzyme Bd2592 12 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 42524734 Common - ABC-type metal ion transport system, periplasmic component. Bd3371 123 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 42523238 Common cysM cysteine synthase A Bd1744 229 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 42521899 Pathogen - hypothetical protein Bd0276 1 None None None 42522935 Common - Spermidine/putrescine transport ATP-binding protein potA Bd1419 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 42523529 Common ygcA hypothetical RNA methyltransferase Bd2056 184 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 42523981 Common - ribosomal-protein-alanine acetyltransferase Bd2558 122 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 42524418 Pathogen - hypothetical protein Bd3023 1 None None None 42521756 Pathogen - hypothetical protein Bd0117 1 None None None 42521974 Common - putative arginase (Fragment) Bd0356 138 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 42523550 Common dnaE hypothetical protein Bd2078 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 42525205 Common - hypothetical protein Bd3884 45 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 42522773 Common - hypothetical protein Bd1244 40 COG2356 EndA, Endonuclease I DNA replication, recombination, and repair 42524031 Common fixN cytochrome c oxidase, cbb3-type, subunit I Bd2611 148 COG3278 CcoN, Cbb3-type cytochrome oxidase, subunit 1 Posttranslational modification, protein turnover, chaperones 42522214 Common ppaT hypothetical protein Bd0623 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 42521828 Common xseB exodeoxyribonuclease VII, small subunit Bd0198 134 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 42524496 Common - putative methyltransferase Bd3107 209 COG0313 COG0313, Predicted methyltransferases General function prediction only 42525199 Pathogen - hypothetical protein Bd3878 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 42522382 Common - GTP-binding protein Bd0806 195 COG0218 COG0218, Predicted GTPase General function prediction only 42522116 Common che CinA-like protein Bd0510 190 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 42525065 Common nadA quinolinate synthetase Bd3735 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 42522624 Common hit hit family hydrolase Bd1069 125 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 42525100 Pathogen - hypothetical protein Bd3772 1 None None None 42522083 Pathogen - hypothetical protein Bd0475 1 None None None 42522267 Pathogen - hypothetical protein Bd0680 1 None None None 42523541 Pathogen - hypothetical protein Bd2069 1 None None None 42522759 Common amyX pullulanase Bd1228 123 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 42523195 Common capM capsular polysaccharide synthesis enzyme Cap8M Bd1698 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 42522363 Common - putative tonB dependent receptor domain protein Bd0784 2 None None None 42523268 Common guaB Inosine-5-monophosphate dehydrogenase Bd1779 233 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 42521963 Common - ABC-type transport system, permease component. Bd0342 91 COG3127 COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Secondary metabolites biosynthesis, transport, and catabolism 42523295 Common - hypothetical protein Bd1809 10 None None None 42523786 Common fba fructose-bisphosphate aldolase Bd2339 72 COG1830 FbaB, DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes Carbohydrate transport and metabolism 42524983 Pathogen - hypothetical protein Bd3641 1 None None None 42522411 Common tolR tolR protein Bd0837 9 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 42524902 Common - hypothetical protein Bd3551 7 COG1579 COG1579, Zn-ribbon protein, possibly nucleic acid-binding General function prediction only 42524121 Common - putative GTPase Bd2703 163 COG1162 COG1162, Predicted GTPases General function prediction only 42522662 Pathogen - hypothetical protein Bd1114 1 None None None 42524934 Pathogen - hypothetical protein Bd3588 1 None None None 42524292 Common - hypothetical protein Bd2886 35 COG5007 COG5007, Predicted transcriptional regulator, BolA superfamily Transcription 42523989 Pathogen - hypothetical protein Bd2566 1 None None None 42524629 Common motB chemotaxis MotB protein Bd3253 57 COG1360 MotB, Flagellar motor protein Cell motility and secretion 42524937 Common - hypothetical protein Bd3592 29 COG3694 COG3694, ABC-type uncharacterized transport system, permease component General function prediction only 42524345 Common - hypothetical protein Bd2942 9 COG0392 COG0392, Predicted integral membrane protein Function unknown 42524539 Pathogen - hypothetical protein Bd3154 1 None None None 42524798 Common - hypothetical protein Bd3441 19 None None None 42521742 Common groES chaperonin groES Bd0097 216 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 42522577 Common phoB DNA-binding response regulator PhoB Bd1017 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42522533 Pathogen - hypothetical protein Bd0969 1 None None None 42521923 Common - Sensory transduction histidine kinase Bd0300 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42522747 Pathogen - hypothetical protein Bd1213 1 None None None 42523564 Common - hypothetical protein Bd2093 11 None None None 42523524 Pathogen - hypothetical protein Bd2051 1 None None None 42522985 Common - hypothetical protein Bd1474 4 None None None 42521926 Common rnk regulator of nucleoside diphosphate kinase Bd0303 95 COG0782 GreA, Transcription elongation factor Transcription 42525109 Common pyrH hypothetical protein Bd3783 232 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 42522878 Common - hypothetical protein Bd1359 5 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42523040 Common - hypothetical protein Bd1533 89 COG0807 RibA, GTP cyclohydrolase II Coenzyme metabolism 42524247 Common - two-component hybrid sensor and regulator Bd2838 214 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42522568 Pathogen - hypothetical protein Bd1007 1 None None None 42523869 Common - serin protease Bd2428 124 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42523045 Pathogen - hypothetical protein Bd1538 1 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 42521712 Common rho transcription termination factor Rho Bd0065 210 COG1158 Rho, Transcription termination factor Transcription 42523707 Pathogen - hypothetical protein Bd2249 1 None None None 42525173 Pathogen - hypothetical protein Bd3850 1 None None None 42524066 Common choD putative cholesterol oxidase Bd2646 56 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 42524612 Common cpt carboxypeptidase T precursor Bd3234 26 COG2866 COG2866, Predicted carboxypeptidase Amino acid transport and metabolism 42521658 Pathogen - hypothetical protein Bd0008 1 None None None 42523272 Common - hypothetical protein Bd1784 5 COG3832 COG3832, Uncharacterized conserved protein Function unknown 42524476 Common nuoB NADH dehydrogenase I chain B Bd3086 192 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 42523422 Common - sodium-dependent serine transporter Bd1945 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 42522764 Pathogen - hypothetical protein Bd1234 1 None None None 42522774 Common - hypothetical protein Bd1247 33 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 42521810 Common ppiA peptidyl-prolyl cis-trans isomerase Bd0177 197 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 42522864 Pathogen - hypothetical protein Bd1344 1 None None None 42525049 Common - hypothetical protein Bd3716 24 COG4270 COG4270, Predicted membrane protein Function unknown 42524511 Common - sensor histidine kinase Bd3125 148 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 42523536 Common - hypothetical protein Bd2063 181 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 42524684 Common rp32 RNA polymerase sigma-32 factor Bd3314 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 42522059 Pathogen - hypothetical protein Bd0450 1 None None None 42523821 Common aglS Adventurous gliding motility protein S Bd2375 4 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 42524243 Common sfcA NAD-dependent malic enzyme Bd2834 179 COG0281 SfcA, Malic enzyme Energy production and conversion 42523877 Common - phenol 2-monooxygenase Bd2437 159 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 42524177 Common - hypothetical protein Bd2765 6 COG3449 COG3449, DNA gyrase inhibitor DNA replication, recombination, and repair 42522103 Pathogen - hypothetical protein Bd0496 1 None None None 42522395 Common - Fusaric acid resistance protein Bd0819 6 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 42524438 Common - capsule biosynthesis protein capA Bd3045 71 COG2843 PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) Cell envelope biogenesis, outer membrane 42523874 Pathogen - hypothetical protein Bd2433 1 None None None 42523444 Common rsuA2 pseudouridylate synthase Bd1967 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 42523075 Common - GTP pyrophosphokinase Bd1570 207 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 42523231 Common ilvE branched-chain amino acid aminotransferase Bd1736 180 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 42523704 Common - oxidoreductase Bd2246 116 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 42522146 Common menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase Bd0546 114 COG1575 MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase Coenzyme metabolism 42525031 Common hsdS type I restriction-modification system, S subunit Bd3695 76 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 42521996 Pathogen - hypothetical protein Bd0382 1 None None None 42523033 Common - hypothetical protein Bd1526 19 None None None 42523959 Pathogen - hypothetical protein Bd2533 1 None None None 42522133 Common flgE Flagellar biosynthesisprotein Bd0530 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 42524074 Common aad hypothetical protein Bd2654 44 COG2173 DdpX, D-alanyl-D-alanine dipeptidase Cell envelope biogenesis, outer membrane 42523260 Common - ABC-type multidrug transport system substrate-binding protein Bd1770 20 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 42524156 Pathogen - hypothetical protein Bd2741 1 None None None 42524957 Pathogen - hypothetical protein Bd3614 2 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 42523056 Common truB tRNA pseudouridine synthase B Bd1549 242 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 42521922 Common - two-component response regulator Bd0299 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42524087 Common - hypothetical protein Bd2669 87 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42524638 Common - putative pseudouridylate synthase Bd3264 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 42523232 Common mreB rod shape-determining protein Bd1737 229 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 42524748 Common livF branched-chain amino acid transport system ATP-binding protein Bd3389 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 42523843 Pathogen - hypothetical protein Bd2399 1 None None None 42524898 Common - RRM3/PIF1 helicase homolog Bd3546 70 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 42522654 Common lgt prolipoprotein diacylglyceryl transferase Bd1105 189 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 42524808 Common hemN coproporphyrinogen III oxidase Bd3454 204 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 42523304 Pathogen - hypothetical protein Bd1818 1 None None None 42524666 Common cbaB oxidase-related protein Bd3294 87 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 42522270 Common - glycine cleavage system protein H homologue Bd0683 188 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 42524538 Common ppsA phosphoenolpyruvate synthase Bd3153 149 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 42522168 Common - hypothetical protein Bd0572 32 COG4728 COG4728, Uncharacterized protein conserved in bacteria Function unknown 42523166 Common - putative helicase/SNF2 family domain protein Bd1666 149 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 42523374 Pathogen - hypothetical protein Bd1895 1 None None None 42522169 Common - 2-nitropropane dioxygenase Bd0573 144 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 42522427 Common pyrB aspartate carbamoyltransferase Bd0855 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 42524590 Common - putative phosphatase protein Bd3209 29 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 42524816 Common - putative hydrolase Bd3462 181 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42521786 Pathogen - hypothetical protein Bd0149 1 None None None 42524507 Common - ABC-type organic solvent transporter, solute-binding periplasmic protein. Bd3120 66 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 42522740 Common - methyltransferase Bd1206 209 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 42524571 Common ftsZ cell division protein FtsZ Bd3189 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 42522229 Pathogen - hypothetical protein Bd0639 1 None None None 42522162 Pathogen - hypothetical protein Bd0565 1 None None None 42523400 Pathogen - hypothetical protein Bd1922 1 None None None 42524237 Common cheW2 hypothetical protein Bd2828 118 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 42524905 Pathogen - hypothetical protein Bd3554 1 None None None 42524108 Pathogen - hypothetical protein Bd2690 2 None None None 42522296 Pathogen - hypothetical protein Bd0710 1 None None None 42524658 Common hsp molecular chaperone, Hsp70 family Bd3286 229 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 42525008 Common exoA exodeoxyribonuclease Bd3670 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 42522525 Common pmbA putative inactivated Zn-dependent peptidase, PMBA ortholog Bd0959 159 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 42524498 Pathogen - hypothetical protein Bd3109 1 None None None 42522029 Pathogen - hypothetical protein Bd0415 1 None None None 42522383 Common cks 3-deoxy-manno-octulosonate cytidylyltransferase Bd0807 144 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 42524284 Common - putative ABC-type amino acid transport periplasmic protein Bd2877 8 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42524402 Common purD phosphoribosylamine--glycine ligase Bd3006 231 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 42522091 Common pssA hypothetical protein Bd0483 148 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 42522860 Common - putative methyl accepting chemotaxis protein Bd1340 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42521783 Common bglX2 hypothetical protein Bd0146 180 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 42522453 Pathogen - hypothetical protein Bd0882 1 None None None 42521895 Common secA preprotein translocase subunit SecA Bd0272 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 42523613 Pathogen - hypothetical protein Bd2147 1 None None None 42524518 Pathogen - hypothetical protein Bd3132 1 None None None 42522349 Common leuS leucyl-rRNA synthetase Bd0767 5 None None None 42522908 Common prnA tryptophan halogenase Bd1390 16 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 42524454 Pathogen - hypothetical protein Bd3062 1 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 42524308 Pathogen - hypothetical protein Bd2903 1 None None None 42523202 Common - transcriptional regulator Bd1706 13 None None None 42522186 Common - hypothetical Membrane Spanning Protein Bd0592 3 None None None 42523021 Common bfr bacterioferritin Bd1514 45 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 42523952 Pathogen - hypothetical protein Bd2526 1 None None None 42524250 Common - hypothetical protein Bd2842 4 None None None 42525228 Common gidB glucose inhibited division protein B Bd3908 171 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 42523279 Pathogen - hypothetical protein Bd1791 1 None None None 42524375 Common rplC 50S ribosomal protein L3 Bd2976 222 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 42524975 Common - hypothetical protein Bd3632 43 COG3607 COG3607, Predicted lactoylglutathione lyase General function prediction only 42522274 Common - putative hemagglutinin/hemolysin-related protein Bd0688 30 None None None 42523450 Common - butyryl-CoA dehydrogenase Bd1973 163 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 42524675 Pathogen - hypothetical protein Bd3304 1 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42524890 Common - RNA methyltransferase, TrmH family, group 1 Bd3538 101 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 42523939 Pathogen - hypothetical protein Bd2512 1 None None None 42524321 Common pobR putative transcriptional regulator Bd2916 83 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 42524372 Common rplB 50S ribosomal protein L2 Bd2973 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 42524098 Pathogen - hypothetical protein Bd2680 2 None None None 42525160 Common nadE NH(3)-dependent NAD(+) synthetase Bd3836 212 COG0171 NadE, NAD synthase Coenzyme metabolism 42521983 Common - Cation efflux system protein Bd0368 204 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 42524967 Common - hypothetical protein Bd3624 7 None None None 42522331 Pathogen - hypothetical protein Bd0748 1 None None None 42523002 Common ompH hypothetical protein Bd1494 31 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 42524588 Common - hypothetical protein Bd3207 5 None None None 42524082 Common - FMN oxidoreductase Bd2664 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 42524520 Pathogen - hypothetical protein Bd3134 1 None None None 42524417 Pathogen - hypothetical protein Bd3022 1 None None None 42524874 Common pbpB penicillin-binding protein transpeptidase domain Bd3522 88 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 42521673 Common sdhA succinate dehydrogenase flavoprotein subunit Bd0025 225 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 42522502 Common endA putative secreted nuclease Bd0934 40 COG2356 EndA, Endonuclease I DNA replication, recombination, and repair 42524332 Pathogen - hypothetical protein Bd2927 1 None None None 42525083 Common pepA aminopeptidase A/I Bd3755 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 42522638 Pathogen - hypothetical protein Bd1085 1 None None None 42523746 Pathogen - hypothetical protein Bd2295 1 None None None 42524835 Common - Phosphotrypsin Bd3482 23 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42524695 Pathogen fliO polar flagellar assembly protein FliO Bd3326 2 COG3190 FliO, Flagellar biogenesis protein Cell motility and secretion 42522628 Common futA putative iron ABC transporter Bd1074 120 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 42522618 Common - hypothetical protein Bd1063 5 None None None 42524855 Common - potassium voltage-gated channel, shaker-related subfamily, beta member Bd3502 198 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 42522549 Common recQ ATP-dependent DNA helicase RecQ Bd0988 224 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 42523634 Pathogen - hypothetical protein Bd2171 1 None None None 42524152 Pathogen - hypothetical protein Bd2737 1 None None None 42522635 Common mcp methyl-accepting chemotaxis protein Bd1081 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42524365 Common rplN 50S ribosomal protein L14 Bd2965 247 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 42523697 Pathogen - hypothetical protein Bd2239 1 None None None 42524187 Common - predicted hydrolase of HD superfamily Bd2777 33 COG1896 COG1896, Predicted hydrolases of HD superfamily General function prediction only 42522248 Pathogen - hypothetical protein Bd0661 1 None None None 42521898 Pathogen - putative lipoprotein Bd0275 1 COG2913 SmpA, Small protein A (tmRNA-binding) Translation, ribosomal structure and biogenesis 42522433 Common pilI pilus biogenesis protein and ABC-type transporter Bd0861 16 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 42521848 Pathogen - hypothetical protein Bd0222 1 None None None 42523087 Common ssb single-strand binding protein Bd1582 214 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 42523131 Pathogen - hypothetical protein Bd1628 2 COG3890 ERG8, Phosphomevalonate kinase Lipid metabolism 42522412 Common aglS Adventurous gliding motility protein S Bd0838 8 None None None 42522707 Common - microtubule binding protein Bd1167 83 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42524399 Common purQ phosphoribosylformylglycinamidine synthase I Bd3003 232 COG0047 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain Nucleotide transport and metabolism 42522838 Common - oxidoreductase Bd1317 237 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 42525040 Common - predicted kinase Bd3705 52 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 42522122 Common cdh CDP-diacylglycerol pyrophosphatase Bd0518 18 COG2134 Cdh, CDP-diacylglycerol pyrophosphatase Lipid metabolism 42524721 Common - heme biosynthesis Bd3357 108 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 42523921 Common efp translation elongation factor EF-P Bd2491 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 42524381 Common rpoB DNA-directed RNA polymerase beta chain Bd2984 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 42524528 Pathogen - hypothetical protein Bd3143 1 None None None 42524131 Common - hyperpolarization-activated, cyclic nucleotide-gated K+ Bd2713 95 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42522467 Common - transcriptional regulator, LysR family Bd0897 183 COG0583 LysR, Transcriptional regulator Transcription 42524681 Pathogen - hypothetical protein Bd3310 1 None None None 42522974 Common serA phosphoglycerate dehydrogenase Bd1461 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 42521884 Common nhaC hypothetical protein Bd0259 69 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 42521943 Common infA translation initiation factor IF-1 Bd0321 209 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 42523767 Common cysS hypothetical protein Bd2317 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42524914 Common panD aspartate alpha-decarboxylase Bd3565 130 COG0853 PanD, Aspartate 1-decarboxylase Coenzyme metabolism 42523404 Common gabD succinate-semialdehyde dehydrogenase (NADP+) Bd1926 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 42523449 Common oppA ABC-type dipeptide/oligopeptide/nickel transport systems Bd1972 149 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 42523340 Common - Uncharacterized FAD-dependent dehydrogenase Bd1860 81 COG2509 COG2509, Uncharacterized FAD-dependent dehydrogenases General function prediction only 42522316 Common - hypothetical protein Bd0731 4 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42522047 Common - hypothetical protein Bd0437 10 None None None 42524774 Common - putative serine protease Bd3415 7 None None None 42524823 Pathogen - hypothetical protein Bd3470 1 None None None 42523592 Pathogen - hypothetical protein Bd2124 1 None None None 42524917 Pathogen - hypothetical protein Bd3568 1 None None None 42522158 Pathogen - hypothetical protein Bd0560 1 COG1283 NptA, Na+/phosphate symporter Inorganic ion transport and metabolism 42522360 Common sfsA sugar fermentation stimulation protein Bd0781 108 COG1489 SfsA, DNA-binding protein, stimulates sugar fermentation General function prediction only 42522478 Common - DNA-binding protein Bd0908 14 COG1510 COG1510, Predicted transcriptional regulators Transcription 42522600 Common - Trypsin Bd1043 8 COG3591 COG3591, V8-like Glu-specific endopeptidase Amino acid transport and metabolism 42522002 Common - hypothetical protein Bd0388 3 None None None 42522580 Pathogen - putative DNA-dependent DNA polymerase Bd1020 1 None None None 42524756 Common flgD basal-body rod modification protein flgD Bd3397 115 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 42522717 Common - hypothetical protein Bd1177 5 None None None 42523367 Common - 2-oxoglutarate/malate translocator Bd1887 90 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 42522369 Pathogen - hypothetical protein Bd0792 1 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 42525200 Pathogen - hypothetical protein Bd3879 1 None None None 42523331 Pathogen - hypothetical protein Bd1847 1 None None None 42524194 Common leuC aconitate hydratase Bd2784 223 COG1048 AcnA, Aconitase A Energy production and conversion 42524996 Common - hypothetical protein Bd3655 50 COG3832 COG3832, Uncharacterized conserved protein Function unknown 42524971 Common - hypothetical protein Bd3628 24 COG2314 XynA, Predicted membrane protein Function unknown 42521765 Common argD Acetylornithine/succinyldiaminopimelate aminotransferase Bd0127 232 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 42522118 Pathogen - hypothetical protein Bd0514 1 None None None 42522949 Pathogen - hypothetical protein Bd1433 1 None None None 42521665 Common pdxA pyridoxal phosphate biosynthetic protein Bd0015 159 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 42522408 Common aglT adventurous gliding motility protein T Bd0833 77 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 42522601 Pathogen - hypothetical protein Bd1044 1 None None None 42523578 Pathogen - hypothetical protein Bd2109 1 None None None 42525138 Common linC 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase Bd3814 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 42525181 Common pccB propionyl-CoA carboxylase beta chain Bd3858 216 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 42523689 Common exsB succinoglycan biosynthesis regulator Bd2231 147 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 42523932 Common MCP MCP chemotaxis protein Bd2504 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42521850 Pathogen - hypothetical protein Bd0224 1 None None None 42523496 Common nrtB ABC-type nitrate transporter, permease protein Bd2021 171 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 42522135 Common flgA flagellar protein FlgA Bd0532 14 COG1261 FlgA, Flagellar basal body P-ring biosynthesis protein Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 42523390 Common potE amino acid transporter Bd1912 147 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42524500 Common - 30S ribosomal protein S4 Bd3112 224 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 42522326 Common - GGDEF domain protein Bd0742 184 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 42523258 Common - ABC transporter permease protein Bd1768 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 42525059 Pathogen - hypothetical protein Bd3728 1 None None None 42523284 Pathogen - hypothetical protein Bd1796 1 None None None 42524171 Common def polypeptide deformylase Bd2759 214 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 42525050 Common - putative TetR-family transcriptional regulator Bd3718 89 COG1309 AcrR, Transcriptional regulator Transcription 42523969 Common mgtE Mg2+ transporter MgtE Bd2544 176 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 42523882 Common uvrA excinuclease ABC subunit A Bd2442 243 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 42522098 Common truA pseudouridylate synthase I Bd0491 232 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 42525003 Pathogen - hypothetical protein Bd3664 1 None None None 42524277 Pathogen - hypothetical protein Bd2870 1 None None None 42522958 Pathogen - hypothetical protein Bd1442 1 None None None 42524583 Common mraY phospho-N-acetylmuramoyl-pentapeptide- transferase Bd3201 217 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 42522224 Pathogen - hypothetical protein Bd0634 1 None None None 42522196 Pathogen - hypothetical protein Bd0603 1 None None None 42523680 Common - hypothetical protein Bd2222 53 COG3169 COG3169, Uncharacterized protein conserved in bacteria Function unknown 42524255 Common mtgA monofunctional biosynthetic peptidoglycan transglycosylase Bd2847 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 42523250 Common kdpD two-component sensor KdpD Bd1758 223 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 42523586 Common - hypothetical protein Bd2118 20 COG4752 COG4752, Uncharacterized protein conserved in bacteria Function unknown 42521680 Common rpsF 30S ribosomal protein S6 Bd0032 166 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 42524064 Common - hypothetical protein Bd2644 25 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 42522056 Common - putative dimethyladenosine transferase Bd0447 7 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 42524578 Common murC UDP-N-acetylmuramate--alanine ligase Bd3196 207 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 42523903 Pathogen - protein containing CheY-like receiver Bd2469 1 None None None 42524046 Common - hypothetical protein Bd2626 3 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 42523487 Common fabG 3-oxoacyl-(Acyl-carrier-protein) reductase Bd2012 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 42524581 Pathogen - hypothetical protein Bd3199 1 None None None 42522376 Pathogen - hypothetical protein Bd0800 1 None None None 42523897 Common - soluble lytic murein transglycosylase Bd2462 154 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 42522304 Common - hypothetical protein Bd0719 2 COG3145 AlkB, Alkylated DNA repair protein DNA replication, recombination, and repair 42522716 Pathogen - hypothetical protein Bd1176 1 None None None 42524008 Pathogen - hypothetical protein Bd2586 1 None None None 42522853 Common - hypothetical protein Bd1333 3 COG3174 COG3174, Predicted membrane protein Function unknown 42523555 Common - alpha-beta hydrolase superfamily protein Bd2083 72 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 42523533 Pathogen - hypothetical protein Bd2060 1 None None None 42522526 Common lea desiccation-related protein Bd0961 7 COG5608 COG5608, Conserved secreted protein Function unknown 42522964 Common - transcriptional regulator, MarR family Bd1451 48 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 42522152 Common - hypothetical protein Bd0553 66 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 42525197 Common lon ATP-dependent protease La Bd3876 228 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 42524040 Common dps putative DNA protection during starvation or oxydative stress transcription regulator protein Bd2620 120 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 42523850 Common cheA chemotaxis histidine kinase Bd2406 149 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 42522990 Common aglS Adventurous gliding motility protein S Bd1479 9 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 42523857 Pathogen - hypothetical protein Bd2414 1 None None None 42524982 Common - hypothetical protein Bd3639 15 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 42525028 Common - hypothetical protein Bd3691 19 COG4925 COG4925, Uncharacterized conserved protein Function unknown 42523204 Common - hypothetical protein Bd1708 3 COG5304 COG5304, Uncharacterized protein conserved in bacteria Function unknown 42524791 Pathogen - hypothetical protein Bd3433 1 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42522833 Pathogen - hypothetical protein Bd1312 1 None None None 42524324 Common manA mannose-6-phosphate isomerase Bd2919 28 COG2942 COG2942, N-acyl-D-glucosamine 2-epimerase Carbohydrate transport and metabolism 42525122 Common - cystathionine beta-synthase Bd3796 220 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 42524231 Common - predicted membrane protein Bd2821 14 None None None 42524110 Common - protease Bd2692 138 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42524350 Common resA thiol:disulfide interchange protein tlpA Bd2948 144 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 42523629 Common yhfA hypothetical protein Bd2165 86 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 42522057 Common - putative phospholipase D Bd0448 136 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 42523247 Common - putative oxidoreductase Bd1754 117 COG0431 COG0431, Predicted flavoprotein General function prediction only 42524429 Common ntrX nitrogen assimilation regulatory protein NtrX Bd3035 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42523561 Common - amino acid ABC transporter, periplasmic amino acid-binding Bd2089 17 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42524067 Common tyrdc Decarboxylase, putative Bd2647 105 COG0076 GadB, Glutamate decarboxylase and related PLP-dependent proteins Amino acid transport and metabolism 42522258 Pathogen - hypothetical protein Bd0671 1 None None None 42524653 Common - putative polysaccharide deacetylase Bd3281 84 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 42523328 Common - hypothetical protein Bd1843 4 None None None 42521867 Common rpoD RNA polymerase sigma factor RpoD Bd0242 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 42523313 Common - Sensory transduction histidine kinase Bd1828 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42521747 Pathogen - hypothetical protein Bd0103 1 None None None 42524346 Common hisB histidinol phosphatase Bd2943 122 COG0241 HisB, Histidinol phosphatase and related phosphatases Amino acid transport and metabolism 42522424 Common lepB hypothetical protein Bd0852 207 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 42522140 Common - hypothetical protein Bd0538 2 None None None 42522783 Common - hypothetical protein Bd1258 133 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42524093 Common - putative membrane protein with protease subunit Bd2675 218 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 42524631 Common dsbD thiol:disulfide interchange protein Bd3255 162 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 42524641 Common - putative cell wall surface anchor family protein Bd3267 105 COG3853 TelA, Uncharacterized protein involved in tellurite resistance Inorganic ion transport and metabolism 42522282 Pathogen - hypothetical protein Bd0696 1 None None None 42523094 Common - putative general secretion pathway protein I Bd1589 2 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 42523795 Common dys hypothetical protein Bd2349 51 COG1899 DYS1, Deoxyhypusine synthase Posttranslational modification, protein turnover, chaperones 42522999 Common lolC Lipoprotein releasing system transmembrane protein Bd1490 215 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 42521651 Common dnaA chromosomal replication initiator protein dnaA Bd0001 214 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 42521718 Pathogen - hypothetical protein Bd0072 1 COG3591 COG3591, V8-like Glu-specific endopeptidase Amino acid transport and metabolism 42522885 Pathogen - hypothetical protein Bd1366 1 None None None 42522238 Common map methionine aminopeptidase Bd0649 249 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 42524580 Common ftsW cell division protein FtsW Bd3198 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 42524463 Common phcB Regulatory protein Bd3071 15 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 42525155 Common - hypothetical protein Bd3831 35 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 42522261 Pathogen - hypothetical protein Bd0674 1 None None None 42524921 Pathogen - hypothetical protein Bd3572 1 None None None 42522870 Pathogen - hypothetical protein Bd1351 1 None None None 42524406 Pathogen - hypothetical protein Bd3010 1 None None None 42522981 Common mviN putative virulence factor Bd1468 182 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 42523415 Pathogen - hypothetical protein Bd1937 1 COG3147 DedD, Uncharacterized protein conserved in bacteria Function unknown 42522039 Pathogen - hypothetical protein Bd0426 1 None None None 42524696 Common fliN flagellar motor switch protein FliN Bd3327 124 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 42522445 Pathogen - hypothetical protein Bd0874 1 None None None 42523488 Common fabD malonyl CoA-acyl carrier protein transacylase Bd2013 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 42523380 Pathogen - hypothetical protein Bd1901 1 None None None 42523721 Pathogen - hypothetical protein Bd2264 1 None None None 42523967 Common - ABC-type transporter with fused ATP-binding and permease domain Bd2542 247 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42524358 Common rplO 50S ribosomal protein L15 Bd2956 215 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 42524050 Common - trypsin Bd2630 34 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42523267 Common murI hypothetical protein Bd1778 190 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 42524846 Common aroC chorismate synthase Bd3493 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 42522041 Pathogen - hypothetical protein Bd0428 1 None None None 42523681 Pathogen - hypothetical protein Bd2223 1 None None None 42521825 Common - hypothetical protein Bd0193 4 None None None 42523739 Common - Multisubunit Na+/H+ antiporter Bd2285 58 COG1006 MnhC, Multisubunit Na+/H+ antiporter, MnhC subunit Inorganic ion transport and metabolism 42524124 Common pth peptidyl-tRNA hydrolase Bd2706 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 42523339 Common - hypothetical protein Bd1859 2 None None None 42522754 Common glk glucokinase Bd1223 100 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 42523387 Pathogen - hypothetical protein Bd1908 1 None None None 42522362 Pathogen - hypothetical protein Bd0783 1 None None None 42524968 Common ubiG 3-demethylubiquinone-9 3-methyltransferase Bd3625 222 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 42523011 Common rfaF ADP-heptose:LPS heptosyltransferase II Bd1504 104 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 42523866 Pathogen - hypothetical protein Bd2425 1 None None None 42524716 Common mrcB penicillin-binding protein 1B Bd3351 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 42521995 Common - O-methyltransferase Bd0381 93 COG4122 COG4122, Predicted O-methyltransferase General function prediction only 42522129 Pathogen - hypothetical protein Bd0526 1 None None None 42523074 Common rnpO putative DNA-directed RNA polymerase, omega subunit Bd1569 113 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 42522676 Pathogen - hypothetical protein Bd1128 1 None None None 42522370 Common cpaF cpaF protein Bd0793 161 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 42523816 Common - hypothetical protein Bd2370 2 None None None 42524551 Pathogen - hypothetical protein Bd3168 1 None None None 42523169 Common - hypothetical protein Bd1669 21 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 42523170 Common - phosphoglycerol transferase Bd1670 44 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 42523663 Common - putative NAD(P)H-nitrite reductase Bd2202 4 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 42521733 Pathogen - hypothetical protein Bd0088 1 None None None 42522157 Common - hypothetical protein Bd0559 50 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 42524204 Common batA hypothetical protein Bd2794 78 COG1240 ChlD, Mg-chelatase subunit ChlD Coenzyme metabolism 42522943 Common - putative cysteine protease Bd1427 13 COG4870 COG4870, Cysteine protease Posttranslational modification, protein turnover, chaperones 42524825 Pathogen - hypothetical protein Bd3472 1 None None None 42522485 Common mkl putative ribonucleotide transport atp-binding protein. Bd0915 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 42523503 Common - leucine dehydrogenase Bd2028 171 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 42524246 Common narL two-component response regulator homolog Bd2837 179 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 42522381 Common - nitrogen assimilation regulatory protein Bd0805 173 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42525063 Common recR DNA repair and genetic recombination protein Bd3733 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 42521863 Pathogen - hypothetical protein Bd0238 1 None None None 42525187 Pathogen tatB putative sec-independent protein translocase protein Bd3866 1 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 42521975 Common dppA ABC-type Dipeptide transport protein, periplasmic Bd0357 208 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 42522209 Common - putative lipopolysaccharide biosynthesis protein Bd0618 64 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 42521997 Common - hypothetical protein Bd0383 6 None None None 42522145 Common - DNA recombination protein rmuC Bd0545 124 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 42522590 Common - putative Phospholipase/Carboxylesterase Bd1031 81 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 42523566 Common - 3-oxoacid CoA-transferase subunit A Bd2096 94 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 42522595 Pathogen - hypothetical protein Bd1037 1 None None None 42522663 Pathogen - hypothetical protein Bd1115 1 None None None 42524935 Common drrA ABC-type daunorubicin resistance ATP-binding protein Bd3590 249 COG4586 COG4586, ABC-type uncharacterized transport system, ATPase component General function prediction only 42521938 Common rhlE ATP-dependent RNA helicase Bd0316 236 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 42522062 Pathogen - hypothetical protein Bd0453 1 None None None 42523294 Common thrS hypothetical protein Bd1807 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42522725 Common - putative HD superfamily hydrolase Bd1188 78 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 42525030 Common hsdR type I restriction-modification system restriction subunit Bd3694 137 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 42522900 Common - two-component hybrid sensor and regulator Bd1381 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42523651 Common appD putative oligopeptide transport system ATP-binding protein Bd2189 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 42524028 Common - major anaerobically induced transmembrane protein Bd2608 106 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 42524032 Pathogen - hypothetical protein Bd2612 1 COG4736 CcoQ, Cbb3-type cytochrome oxidase, subunit 3 Posttranslational modification, protein turnover, chaperones 42524013 Common - transcription regulator containing cAMP-binding domain Bd2591 165 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42525066 Pathogen - hypothetical protein Bd3736 1 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 42522927 Common - putative Ni,Fe-hydrogenase I cytochrome b subunit Bd1410 5 COG1969 HyaC, Ni,Fe-hydrogenase I cytochrome b subunit Energy production and conversion 42524047 Common - periplasmic protease Bd2627 7 COG3591 COG3591, V8-like Glu-specific endopeptidase Amino acid transport and metabolism 42524664 Common - hypothetical protein Bd3292 100 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 42523320 Common - acetyl-CoA acyltransferase Bd1835 181 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 42523373 Pathogen - hypothetical protein Bd1894 1 None None None 42522028 Common - hypothetical protein Bd0414 2 None None None 42522084 Common - hypothetical protein Bd0476 4 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 42523682 Common copA copper-transporting ATPase copA Bd2224 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 42523196 Common - putative acetyltransferase Bd1699 48 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 42523513 Common - hydrolase, haloacid dehalogenase-like family Bd2040 66 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 42522461 Common - hypothetical protein Bd0891 106 COG1801 COG1801, Uncharacterized conserved protein Function unknown 42523716 Common cah hypothetical protein Bd2259 147 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 42522454 Common - outer membrane protein Bd0883 32 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 42524291 Common - putative sulfatase Bd2884 64 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 42522268 Pathogen - hypothetical protein Bd0681 1 None None None 42522763 Common amn AMP nucleosidase Bd1233 84 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 42523527 Pathogen - hypothetical protein Bd2054 1 None None None 42521872 Common - hypothetical protein Bd0247 16 None None None 42522803 Pathogen - hypothetical protein Bd1279 1 None None None 42522936 Common potB spermidine/putrescine transport system permease protein Bd1420 166 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 42524072 Common phnA Alkylphosphonate utilization operon protein Bd2652 89 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 42525097 Pathogen - hypothetical protein Bd3769 1 None None None 42523637 Common fadE acyl-CoA dehydrogenase Bd2174 155 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 42522280 Pathogen - hypothetical protein Bd0694 1 None None None 42525206 Common moxR methanol dehydrogenase regulatory protein Bd3885 171 COG0714 COG0714, MoxR-like ATPases General function prediction only 42523542 Common - acetyl-CoA acetyltransferase Bd2070 176 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 42522658 Common - hypothetical protein Bd1110 6 None None None 42521896 Pathogen - hypothetical protein Bd0273 1 None None None 42522532 Pathogen - hypothetical protein Bd0968 1 None None None 42524542 Pathogen - hypothetical protein Bd3157 1 None None None 42521743 Common groEL 60 KDA chaperonin Bd0099 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 42523492 Common pcaD beta-ketoadipate enol-lactone hydrolase Bd2017 133 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42524120 Pathogen - hypothetical protein Bd2702 1 None None None 42522113 Common trpS tryptophanyl-tRNA synthetase II Bd0507 249 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42522748 Pathogen - hypothetical protein Bd1214 1 None None None 42523885 Common - hypothetical protein Bd2446 55 COG1469 COG1469, Uncharacterized conserved protein Function unknown 42524569 Pathogen - hypothetical protein Bd3187 1 None None None 42523829 Pathogen - hypothetical protein Bd2383 1 None None None 42523028 Common - intracellular protease/amidase, putative Bd1521 89 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 42525078 Common - serine/threonine kinase with two-component sensor domain Bd3750 222 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 42523644 Pathogen - hypothetical protein Bd2181 1 None None None 42524481 Common - methyl-accepting chemotaxis protein Bd3092 154 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42524762 Common fliG hypothetical protein Bd3403 125 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 42524181 Pathogen - hypothetical protein Bd2770 1 None None None 42521882 Common - hypothetical protein Bd0257 8 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42524217 Common - hypothetical protein Bd2807 135 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 42524493 Common phnC phosphonate ABC transporter ATP-binding protein Bd3104 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 42523474 Common kup KUP system, potassium uptake transmembrane protein Bd1998 88 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 42523184 Pathogen - hypothetical protein Bd1687 1 None None None 42522048 Common - hypothetical protein Bd0438 2 None None None 42524558 Common ptrB hypothetical protein Bd3175 101 COG1770 PtrB, Protease II Amino acid transport and metabolism 42522557 Common - hypothetical protein Bd0996 44 COG5361 COG5361, Uncharacterized conserved protein Function unknown 42523521 Common - hypothetical protein Bd2048 2 None None None 42521874 Pathogen - hypothetical protein Bd0249 1 None None None 42523753 Pathogen - hypothetical protein Bd2302 1 None None None 42521913 Common ctaB protoheme IX farnesyltransferase Bd0290 173 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 42522108 Common recX regulatory protein RecX Bd0502 11 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 42522174 Common cheW chemotaxis protein Bd0579 14 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 42524163 Common ssuC ABC transporter , permease component Bd2749 184 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 42524557 Common - putative nucleoside-diphosphate-sugar epimerase Bd3174 36 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42522071 Common - hypothetical protein Bd0463 83 COG1872 COG1872, Uncharacterized conserved protein Function unknown 42523055 Common - hypothetical protein Bd1548 158 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 42523992 Common fkpA peptidyl-prolyl cis-trans isomerase, FKBP-type Bd2569 144 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 42521662 Pathogen - hypothetical protein Bd0012 2 None None None 42523113 Common - Molybdopterin oxidoreductase Bd1609 39 COG5557 COG5557, Polysulphide reductase Energy production and conversion 42521766 Common dapE Succinyl-diaminopimelate desuccinylase Bd0129 116 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 42522858 Common map hypothetical protein Bd1338 246 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 42522894 Common - hypothetical protein Bd1375 7 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 42524143 Pathogen - hypothetical protein Bd2726 1 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42524212 Pathogen - hypothetical protein Bd2802 1 None None None 42523217 Common blc outer membrane lipoprotein Blc Bd1721 73 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 42524430 Common ntrY nitrogen regulation protein NtrY Bd3036 220 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 42521953 Common bcsA naringenin-chalcone synthase Bd0331 39 COG3424 BcsA, Predicted naringenin-chalcone synthase Secondary metabolites biosynthesis, transport, and catabolism 42523104 Pathogen - hypothetical protein Bd1599 1 None None None 42523698 Pathogen - hypothetical protein Bd2240 1 None None None 42523836 Common - hypothetical protein Bd2390 6 COG3911 COG3911, Predicted ATPase General function prediction only 42521981 Common - leucyl-rRNA synthetase Bd0365 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42524946 Common yusX hypothetical protein Bd3602 88 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 42523303 Common - hypothetical protein Bd1817 72 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 42524904 Pathogen - hypothetical protein Bd3553 1 None None None 42524041 Common gufA gufA protein Bd2621 95 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 42524899 Common - metallopeptidase Bd3547 63 COG3590 PepO, Predicted metalloendopeptidase Posttranslational modification, protein turnover, chaperones 42522167 Common - hypothetical protein Bd0571 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 42524763 Common fliF flagellar M-ring protein Bd3404 126 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 42523334 Common - hypothetical protein Bd1852 183 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 42521782 Common motB chemotaxis motB protein Bd0145 155 COG1360 MotB, Flagellar motor protein Cell motility and secretion 42521667 Common ppiC Parvulin-like peptidyl-prolyl isomerase Bd0018 134 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 42524591 Common recQ ATP-dependent DNA helicase RecQ Bd3210 242 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 42522544 Common - dienelactone hydrolase family protein Bd0982 111 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 42525182 Common - pyruvate carboxylase Bd3861 235 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 42524238 Common cheD chemotaxis protein Bd2829 44 COG1871 CheD, Chemotaxis protein; stimulates methylation of MCP proteins Cell motility and secretion / Signal transduction mechanisms 42525041 Pathogen - hypothetical protein Bd3706 1 None None None 42522273 Pathogen - hypothetical protein Bd0687 1 None None None 42522706 Pathogen - hypothetical protein Bd1166 1 None None None 42525009 Common - hypothetical protein Bd3671 46 COG3832 COG3832, Uncharacterized conserved protein Function unknown 42521689 Common ftsK cell division protein FtsK Bd0041 198 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 42522518 Pathogen - hypothetical protein Bd0952 1 COG5373 COG5373, Predicted membrane protein Function unknown 42524206 Common - hypothetical protein Bd2796 118 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 42524639 Common - probable transmembrane protein Bd3265 136 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 42522180 Common ddlA D-alanine-D-alanine ligase Bd0585 214 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 42522799 Pathogen - hypothetical protein Bd1275 1 None None None 42524109 Common - 3-hxdroxyacyl-CoA dehydrogenase Bd2691 182 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 42522090 Common - probable membrane protein Bd0482 14 COG0170 SEC59, Dolichol kinase Lipid metabolism 42522181 Common elb isoprenoid biosynthesis protein with amidotransferase-like domain Bd0586 47 COG3155 ElbB, Uncharacterized protein involved in an early stage of isoprenoid biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 42522466 Common - Orotate phosphoribosyltransferase Bd0896 15 None None None 42524663 Pathogen - hypothetical protein Bd3291 1 None None None 42524926 Common - pyruvate carboxylase Bd3578 232 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 42524974 Common - hypothetical protein Bd3631 14 None None None 42522720 Common ycbB putative periplasmic protein YcbB Bd1181 74 COG2989 COG2989, Uncharacterized protein conserved in bacteria Function unknown 42524443 Pathogen - hypothetical protein Bd3051 1 None None None 42522907 Common - hypothetical protein Bd1389 40 COG3148 COG3148, Uncharacterized conserved protein Function unknown 42523163 Common - hypothetical protein Bd1663 5 COG5298 COG5298, Uncharacterized protein conserved in bacteria Function unknown 42524657 Common - hypothetical protein Bd3285 2 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42522187 Common thiB thiamine ABC transporter Bd0593 62 COG4143 TbpA, ABC-type thiamine transport system, periplasmic component Coenzyme metabolism 42522348 Common lipB hypothetical protein Bd0766 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 42524683 Pathogen - hypothetical protein Bd3312 1 None None None 42524510 Common alr hypothetical protein Bd3124 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 42522861 Common - putative disulphide-isomerase Bd1341 10 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 42521977 Common dppC Dipeptide transport system permease protein Bd0360 220 COG4239 COG4239, ABC-type uncharacterized transport system, permease component General function prediction only 42524863 Common gspD general secretion pathway protein D Bd3510 46 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 42522865 Common - oligoribonuclease Bd1346 88 COG1949 Orn, Oligoribonuclease (3'->5' exoribonuclease) RNA processing and modification 42523140 Common pheT phenylalanyl-tRNA synthetase beta chain Bd1638 245 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 42522637 Common - putative metalloprotease Bd1084 16 COG3227 LasB, Zinc metalloprotease (elastase) Amino acid transport and metabolism 42523904 Common - predicted permease YjgP/YjgQ family Bd2471 127 COG0795 COG0795, Predicted permeases General function prediction only 42524630 Common motA flagellar motor protein MotA Bd3254 99 COG1291 MotA, Flagellar motor component Cell motility and secretion 42524452 Common - putative transcriptional regulator Bd3060 44 COG1309 AcrR, Transcriptional regulator Transcription 42522321 Common - putative esterase/lipase Bd0737 12 COG2267 PldB, Lysophospholipase Lipid metabolism 42522497 Pathogen - hypothetical protein Bd0929 1 None None None 42523612 Common sac1 Sulfur deprivation response regulator Bd2145 115 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 42522576 Common phoU phosphate transport system regulatory protein Bd1016 198 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 42523844 Common - putative cell surface protein Bd2400 14 COG3291 COG3291, FOG: PKD repeat General function prediction only 42525213 Common nuoA NADH dehydrogenase I chain A Bd3892 132 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 42523557 Pathogen - hypothetical protein Bd2085 1 None None None 42524374 Common rplD 50S ribosomal protein L4 Bd2975 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 42524035 Common - hypothetical protein Bd2615 45 COG2836 COG2836, Uncharacterized conserved protein Function unknown 42523229 Common metG methionyl-tRNA synthetase Bd1733 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42524790 Common hydG response regulator of hydrogenase 3 activity (sensor HydH) Bd3432 221 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42524803 Common hemC hydroxymethylbilane synthase Bd3447 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 42522627 Pathogen - hypothetical protein Bd1073 1 None None None 42523271 Pathogen - hypothetical protein Bd1783 1 None None None 42521980 Common speA arginine decarboxylase Bd0364 84 COG1166 SpeA, Arginine decarboxylase (spermidine biosynthesis) Amino acid transport and metabolism 42523414 Pathogen - hypothetical protein Bd1936 1 None None None 42522554 Common - putative secreted protein Bd0993 11 None None None 42524157 Pathogen - hypothetical protein Bd2742 1 None None None 42522984 Common - hypothetical protein Bd1473 5 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42524081 Pathogen - hypothetical protein Bd2663 1 None None None 42524854 Pathogen - hypothetical protein Bd3501 1 None None None 42523132 Common - Diphosphomevalonate decarboxylase Bd1629 22 COG3407 MVD1, Mevalonate pyrophosphate decarboxylase Lipid metabolism 42521815 Common aglX Adventurous gliding motility protein X Bd0182 134 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 42522134 Common flgG flagellar basal-body rod protein FlgG Bd0531 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 42523441 Common - hypothetical protein Bd1964 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 42524579 Common murG UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Bd3197 209 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 42522776 Pathogen - hypothetical protein Bd1249 1 None None None 42524331 Pathogen - hypothetical protein Bd2926 1 None None None 42521917 Common - Fumarylacetoacetate hydrolase family protein Bd0294 76 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 42522709 Common - large Ala/Glu-rich protein Bd1169 175 COG1716 COG1716, FOG: FHA domain Signal transduction mechanisms 42523233 Pathogen - hypothetical protein Bd1738 1 None None None 42523768 Common gltX glutamyl-tRNA synthetase Bd2319 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 42522015 Pathogen - hypothetical protein Bd0401 1 None None None 42524677 Common pilQ flp pilus assembly protein Bd3306 132 COG4964 CpaC, Flp pilus assembly protein, secretin CpaC Intracellular trafficking and secretion 42522623 Pathogen - hypothetical protein Bd1068 1 None None None 42525176 Pathogen - hypothetical protein Bd3853 1 None None None 42522201 Common ppc hypothetical protein Bd0608 116 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 42523088 Pathogen - hypothetical protein Bd1583 1 None None None 42521670 Common etfA Electron transfer flavoprotein alpha-subunit Bd0021 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 42525233 Common rnpA ribonuclease P protein component Bd3913 5 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 42523239 Common - transcriptional regulator, LysR family Bd1745 184 COG0583 LysR, Transcriptional regulator Transcription 42524222 Common - hypothetical protein Bd2812 14 COG4270 COG4270, Predicted membrane protein Function unknown 42524267 Common tonB siderophore-mediated iron transport protein Bd2860 31 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42523705 Pathogen - putaive periplasmic or secreted lipoprotein Bd2247 1 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 42522021 Common - putative hydrolase Bd0407 88 COG1078 COG1078, HD superfamily phosphohydrolases General function prediction only 42524449 Common - similar to transcriptional regulator (MarR family) Bd3057 62 COG1846 MarR, Transcriptional regulators Transcription 42523820 Pathogen - hypothetical protein Bd2374 1 None None None 42524176 Common - hypothetical protein Bd2764 66 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 42521772 Common - hypothetical protein Bd0135 96 COG0778 NfnB, Nitroreductase Energy production and conversion 42521847 Common - hypothetical protein Bd0221 22 COG3014 COG3014, Uncharacterized protein conserved in bacteria Function unknown 42524086 Common - probable cytochrome c Bd2668 14 None None None 42522571 Common sixA Phosphohistidine phosphatase Bd1011 59 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 42524604 Pathogen - hypothetical protein Bd3226 1 COG4982 COG4982, 3-oxoacyl- acyl-carrier protein 42524689 Common flhF flagellar biosynthesis protein Bd3320 200 COG1419 FlhF, Flagellar GTP-binding protein Cell motility and secretion 42522886 Common - hypothetical protein Bd1367 26 COG3832 COG3832, Uncharacterized conserved protein Function unknown 42524244 Pathogen - hypothetical protein Bd2835 1 None None None 42522732 Common nrdE ribonucleotide-diphosphate reductase alpha subunit Bd1196 219 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 42523999 Common - TWO-component sensor histidine kinase Bd2576 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42523479 Pathogen - hypothetical protein Bd2003 1 None None None 42523765 Common - hypothetical protein Bd2314 5 None None None 42523261 Common - putative amino acid transporter Bd1771 12 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42524021 Common norB nitric-oxide reductase subunit B Bd2599 91 COG3256 NorB, Nitric oxide reductase large subunit Inorganic ion transport and metabolism 42521965 Common napA Na/H antiporter Bd0345 98 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 42522602 Pathogen - hypothetical protein Bd1045 1 None None None 42524203 Common batB hypothetical protein Bd2793 68 COG1240 ChlD, Mg-chelatase subunit ChlD Coenzyme metabolism 42523198 Common - putative methyltransferase Bd1701 38 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 42522477 Common rsmC putative RNA methylase Bd0907 21 None None None 42523122 Common infC translation initiation factor IF-3 Bd1618 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 42522161 Common - serine protease trypsin family Bd0564 21 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42523403 Pathogen - hypothetical protein Bd1925 1 None None None 42524564 Pathogen - hypothetical protein Bd3181 1 None None None 42524407 Pathogen - hypothetical protein Bd3011 1 None None None 42524618 Common - hypothetical protein Bd3241 2 None None None 42522003 Common ogt 6-O-methylguanine-DNA methyltransferase Bd0389 158 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 42524755 Common - hypothetical protein Bd3396 16 None None None 42522368 Pathogen - Cytochrome P450-like protein Bd0791 1 None None None 42525225 Common parB chromosome partitioning protein Bd3905 186 COG1475 Spo0J, Predicted transcriptional regulators Transcription 42522394 Common - hypothetical protein Bd0818 18 COG1285 SapB, Uncharacterized membrane protein Function unknown 42525146 Common - hypothetical protein Bd3822 3 None None None 42523940 Common phoD putative phosphodiesterase/alkaline phosphatase D Bd2513 32 COG3540 PhoD, Phosphodiesterase/alkaline phosphatase D Inorganic ion transport and metabolism 42522407 Common agmU adventurous gliding motility protein U Bd0832 17 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 42525220 Common atpA F0F1 ATP synthase subunit alpha Bd3899 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 42523628 Common - hypothetical protein Bd2164 111 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 42522575 Pathogen - hypothetical protein Bd1015 1 None None None 42523577 Common dsbA Thiol:disulfide interchange protein dsbA precursor Bd2107 60 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 42524276 Common - putative serine/threonine protein kinase Bd2869 92 COG1520 COG1520, FOG: WD40-like repeat Function unknown 42524170 Common fmt hypothetical protein Bd2757 216 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 42525039 Common - putative zinc metallo protease Bd3704 155 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 42524947 Common - hypothetical protein Bd3603 4 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 42524970 Pathogen - hypothetical protein Bd3627 1 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 42525000 Common - hypothetical protein Bd3660 7 None None None 42524279 Common - hypothetical protein Bd2872 30 None None None 42522655 Pathogen - hypothetical protein Bd1106 1 None None None 42523309 Common cheX putative chemotaxis protein CheX Bd1823 21 COG1406 COG1406, Predicted inhibitor of MCP methylation, homolog of CheC Cell motility and secretion 42522136 Pathogen flgH flagellar L-ring protein Bd0534 1 COG2063 FlgH, Flagellar basal body L-ring protein Cell motility and secretion 42521833 Common - methyl-accepting chemotaxis protein Bd0203 85 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42522223 Common pal peptidoglycan-associated lipoprotein Bd0633 145 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 42523787 Common - nifU related protein Bd2341 110 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 42523251 Common kdpE two-component response regulator KdpE Bd1759 213 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42525016 Common - hypothetical protein Bd3679 76 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 42524532 Common coaE hypothetical protein Bd3147 209 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 42523259 Common - ABC transporter ATP-binding protein Bd1769 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42524731 Pathogen - hypothetical protein Bd3368 1 None None None 42524779 Common - Thymidine kinase Bd3420 75 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 42522231 Pathogen yugS Hemolysin Bd0642 1 COG5581 COG5581, Predicted glycosyltransferase Cell envelope biogenesis, outer membrane 42522195 Pathogen - hypothetical protein Bd0602 1 None None None 42524582 Common murD hypothetical protein Bd3200 211 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 42523807 Pathogen - hypothetical protein Bd2361 1 None None None 42523497 Common nrtC ABC-type nitrate transporter, ATP-binding protein Bd2022 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 42524676 Common asgA hypothetical protein Bd3305 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42521681 Common - hypothetical protein Bd0033 8 None None None 42524339 Common - hypothetical protein Bd2936 12 None None None 42522377 Pathogen - hypothetical protein Bd0801 1 COG2944 COG2944, Predicted transcriptional regulator Transcription 42522307 Common slyD FKBP-type peptidyl-prolyl cis-trans isomerase Bd0722 113 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 42523696 Common - permease of DMT superfamily Bd2238 32 None None None 42522766 Common - probable DNA-binding stress protein Bd1236 145 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 42522247 Common - hypothetical protein Bd0660 8 None None None 42524153 Pathogen - hypothetical protein Bd2738 1 None None None 42524073 Common pfs 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase Bd2653 77 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 42524186 Pathogen - hypothetical protein Bd2776 1 None None None 42524769 Common - hypothetical protein Bd3410 2 None None None 42522697 Common ankB ankyrin domain protein Bd1155 84 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 42524521 Common - hypothetical protein Bd3135 6 None None None 42523014 Common ribC riboflavin kinase / FAD synthase ribC Bd1507 211 COG0196 RibF, FAD synthase Coenzyme metabolism 42525130 Common - ABC-type organic solvent resistance transport system, permease protein Bd3804 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 42522503 Pathogen - hypothetical protein Bd0936 1 None None None 42522952 Common - osmotically inducible protein Bd1436 82 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 42523603 Common slyX SlyX protein homolog Bd2136 17 COG2900 SlyX, Uncharacterized protein conserved in bacteria Function unknown 42524366 Common rpsQ 30S ribosomal protein S17 Bd2967 235 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 42521942 Common rbp RNA-binding protein Bd0320 66 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 42522839 Common fumC fumarate hydratase Bd1318 234 COG0114 FumC, Fumarase Energy production and conversion 42523585 Common rplS 50S ribosomal protein L19 Bd2117 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 42523861 Common - hypothetical protein Bd2420 21 None None None 42524529 Pathogen - hypothetical protein Bd3144 1 None None None 42522795 Pathogen - putative periplasmic protease Bd1271 1 None None None 42524317 Common mutS MutS-like mismatch repair protein, ATPase Bd2912 194 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 42523421 Common engA probable GTP-binding protein Bd1944 230 COG1160 COG1160, Predicted GTPases General function prediction only 42523046 Pathogen - hypothetical protein Bd1539 1 None None None 42524722 Pathogen - hypothetical protein Bd3358 1 None None None 42521797 Common - hypothetical protein Bd0161 34 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42521727 Pathogen - hypothetical protein Bd0082 1 COG4907 COG4907, Predicted membrane protein Function unknown 42522612 Common - ABC transporter, periplasmic domain Bd1057 19 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42524706 Pathogen - hypothetical protein Bd3338 1 None None None 42523041 Common mmsA Methylmalonate-semialdehyde dehydrogenase Bd1534 219 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 42524737 Common - hypothetical protein Bd3374 24 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42523662 Common greA transcription elongation factor GreA Bd2201 202 COG0782 GreA, Transcription elongation factor Transcription 42523095 Common - hypothetical protein Bd1590 2 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 42524403 Common - phosphoribosylaminoimidazolesuccinocarboxamide synthase Bd3007 29 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 42525111 Common uppS undecaprenyl pyrophosphate synthetase Bd3785 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 42522917 Pathogen - hypothetical protein Bd1399 1 None None None 42523039 Common - hypothetical protein Bd1532 10 None None None 42524788 Common - sensory transduction histidine kinase Bd3430 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42521960 Common rbp RNA-binding protein Bd0339 66 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 42523029 Common - transcription regulator NtrC family Bd1522 169 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42524773 Pathogen - hypothetical protein Bd3414 1 None None None 42522297 Common - DNA-binding protein HU Bd0711 208 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 42522317 Common yloN hypothetical protein Bd0733 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 42524285 Common - hypothetical protein Bd2878 64 COG1403 McrA, Restriction endonuclease Defense mechanisms 42525082 Common clpP ATP-dependent Clp protease proteolytic subunit Bd3754 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 42523679 Common - Na/Pi-cotransporter family protein Bd2221 85 COG1283 NptA, Na+/phosphate symporter Inorganic ion transport and metabolism 42523744 Common - putative hemagglutinin/hemolysin-related protein Bd2292 43 None None None 42524916 Common - hypothetical protein Bd3567 5 None None None 42521755 Pathogen - hypothetical protein Bd0115 1 None None None 42521945 Common - putative secreted protein Bd0323 60 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 42525051 Pathogen - hypothetical protein Bd3719 1 None None None 42524875 Pathogen - hypothetical protein Bd3523 1 COG3030 FxsA, Protein affecting phage T7 exclusion by the F plasmid General function prediction only 42523979 Common - hypothetical protein Bd2555 3 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 42524836 Common - predicted hydrolase or acyltransferase Bd3483 43 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42523615 Common - nitroreductase family protein Bd2149 99 COG0778 NfnB, Nitroreductase Energy production and conversion 42524954 Pathogen - hypothetical protein Bd3610 2 None None None 42524886 Common - carboxyl-terminal protease Bd3534 181 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 42523752 Pathogen - hypothetical protein Bd2301 1 None None None 42522341 Common - hypothetical protein Bd0758 16 None None None 42523652 Common appF oligopeptide ABC transporter, ATP-binding protein Bd2190 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 42522630 Common fliL flagellar protein FliL Bd1076 9 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 42523747 Pathogen - hypothetical protein Bd2296 1 None None None 42523796 Common - Ubiquinone/menaquinone biosynthesis protein Bd2350 81 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 42523591 Common srp54 signal recognition particle protein Bd2123 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 42521911 Common ctaE cytochrome c oxidase subunit III Bd0288 159 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 42523971 Common - hypothetical protein Bd2546 33 COG2928 COG2928, Uncharacterized conserved protein Function unknown 42524845 Common menB naphthoate synthase Bd3492 175 COG0447 MenB, Dihydroxynaphthoic acid synthase Coenzyme metabolism 42522361 Common - hypothetical protein Bd0782 25 None None None 42524494 Common phnD Phosphonates-binding protein Bd3105 89 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 42521748 Pathogen - hit locus orf4 Bd0108 1 None None None 42523379 Pathogen - hypothetical protein Bd1900 1 None None None 42525137 Common - universal stress protein Bd3813 51 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 42524491 Common - hypothetical protein Bd3102 24 COG0824 FcbC, Predicted thioesterase General function prediction only 42524622 Common - hypothetical protein Bd3246 8 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 42525061 Common dnaX DNA polymerase III gamma and tau subunits Bd3731 249 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 42522608 Pathogen - putative phosphoenolpyruvate carboxylase Bd1052 1 None None None 42522802 Common - Carbon-nitrogen hydrolase: apolipoprotein N-acyltransferase Bd1278 160 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 42522072 Common - Cell division protein DivIVA homologue Bd0464 38 COG3599 DivIVA, Cell division initiation protein Cell division and chromosome partitioning 42522536 Common - 3-methyl-2-oxobutanoate dehydrogenase Bd0974 159 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 42522916 Common - putative transmembrane protein Bd1398 68 COG2340 COG2340, Uncharacterized protein with SCP/PR1 domains Function unknown 42522130 Pathogen - hypothetical protein Bd0527 1 None None None 42524705 Pathogen - hypothetical protein Bd3337 1 None None None 42521912 Common - hypothetical protein Bd0289 3 None None None 42523359 Common - ABC-type multidrug transporter permease protein Bd1879 197 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 42522882 Pathogen - hypothetical protein Bd1363 1 None None None 42523573 Common - hypothetical protein Bd2103 2 None None None 42523114 Common - hypothetical protein Bd1610 20 None None None 42523692 Common secD SecD, protein-export membrane protein Bd2234 210 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 42524396 Pathogen - hypothetical protein Bd3000 1 None None None 42523738 Common - NADH dehydrogenase Bd2284 210 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 42523502 Common argS hypothetical protein Bd2027 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42522749 Pathogen - hypothetical protein Bd1215 1 None None None 42521808 Common trx thioredoxin Bd0175 232 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 42522124 Pathogen - hypothetical protein Bd0520 1 None None None 42524806 Common - Conserved Two-component response regulator Bd3451 215 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42522847 Common parA chromosome partitioning protein parA Bd1326 217 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 42523111 Common - Cytochrome c3 Bd1607 26 COG3303 NrfA, Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit Inorganic ion transport and metabolism 42524700 Pathogen - hypothetical protein Bd3331 1 None None None 42522298 Common capM1 putative glycosyltransferase Bd0712 169 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 42522110 Common - acetyl-CoA synthetase Bd0504 216 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 42523218 Common - putative transcriptional regulator Bd1722 3 COG0583 LysR, Transcriptional regulator Transcription 42524553 Pathogen - hypothetical protein Bd3170 1 None None None 42522548 Common fusA-2 elongation factor G Bd0987 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 42522511 Pathogen - hypothetical protein Bd0944 1 None None None 42522641 Common - hypothetical protein Bd1089 2 None None None 42521972 Pathogen - hypothetical protein Bd0354 1 None None None 42522657 Common - hypothetical protein Bd1108 21 COG3495 COG3495, Uncharacterized protein conserved in bacteria Function unknown 42523103 Common gspC general secretion pathway protein C Bd1598 20 COG3031 PulC, Type II secretory pathway, component PulC Intracellular trafficking and secretion 42521709 Common - hypothetical protein Bd0062 86 COG1430 COG1430, Uncharacterized conserved protein Function unknown 42524431 Common ribH riboflavin synthase beta chain Bd3037 229 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 42522469 Common esd Esterase D Bd0899 91 COG0627 COG0627, Predicted esterase General function prediction only 42523833 Common - metallo-beta-lactamase superfamily protein Bd2387 30 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 42522715 Common - nucleoside-diphosphate-sugar epimerase Bd1175 54 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42522826 Common - hypothetical protein Bd1304 56 COG2391 COG2391, Predicted transporter component General function prediction only 42524717 Common - putative lipoprotein Bd3352 8 None None None 42522679 Common ilvE branched-chain amino acid aminotransferase Bd1131 207 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 42525184 Pathogen - hypothetical protein Bd3863 1 None None None 42524565 Common - cell wall surface anchor family protein Bd3182 18 None None None 42521897 Pathogen - hypothetical protein Bd0274 1 None None None 42522762 Common - putative pirin-related protein Bd1232 145 COG1741 COG1741, Pirin-related protein General function prediction only 42524480 Common - hypothetical protein Bd3091 37 None None None 42522565 Common ygiD hypothetical protein Bd1004 86 COG3384 COG3384, Uncharacterized conserved protein Function unknown 42524257 Common hik sensor histidine kinase/response regulator Bd2849 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42524661 Common - Serine esterase Bd3289 108 COG0400 COG0400, Predicted esterase General function prediction only 42521998 Common dnaE DNA polymerase III, alpha chain Bd0384 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 42524545 Common - putative dehydrogenase Bd3161 20 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42521754 Pathogen - hypothetical protein Bd0114 1 None None None 42522660 Common - ABC-type antimicrobial peptide transporter, permease component Bd1112 45 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 42523916 Common - putative UVB-resistance protein Bd2486 36 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 42523128 Common rplT 50S ribosomal protein L20 Bd1625 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 42523534 Common - hypothetical protein Bd2061 72 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 42523522 Common - hypothetical protein Bd2049 44 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 42522930 Common - hypothetical protein Bd1413 3 None None None 42525106 Common - hypothetical protein Bd3779 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42524290 Common - putative inosine-5'-monophosphate dehydrogenase protein Bd2883 155 COG0517 COG0517, FOG: CBS domain General function prediction only 42522834 Common - hypothetical protein Bd1313 6 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42523929 Common - 2-methylcitrate dehydratase Bd2500 72 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 42522175 Common cheB cheB, glutamate methylesterase Bd0580 189 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 42522054 Common rbsB ABC-type transport system substrate-binding protein Bd0445 106 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 42525074 Common yheU hypothetical protein Bd3744 23 COG3089 COG3089, Uncharacterized protein conserved in bacteria Function unknown 42525038 Common - hypothetical protein Bd3703 18 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 42522413 Common - hypothetical protein Bd0840 5 None None None 42521837 Common glpD hypothetical protein Bd0208 149 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 42521873 Common - hypothetical protein Bd0248 3 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 42523528 Pathogen - hypothetical protein Bd2055 1 None None None 42523922 Pathogen - hypothetical protein Bd2492 1 None None None 42524198 Pathogen - putative peptide methionine sulfoxide reductase Bd2788 1 None None None 42522589 Common corA magnesium and cobalt transport protein Bd1030 167 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 42524989 Common - two-component hybrid sensor and regulator Bd3648 222 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 42524997 Common ydeR MFS permease Bd3656 109 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42522901 Common - two-component hybrid sensor and regulator Bd1382 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42521871 Pathogen - hypothetical protein Bd0246 1 None None None 42522354 Pathogen - hypothetical protein Bd0774 1 None None None 42523157 Common - Sensory box histidine kinase Bd1657 214 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 42523293 Common htpG heat shock protein 90 Bd1806 149 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 42522890 Common glnS glutaminyl-tRNA synthetase Bd1371 248 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 42525107 Common rpsB 30S ribosomal protein S2 Bd3780 246 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 42522558 Pathogen - hypothetical protein Bd0997 1 None None None 42521869 Pathogen - hypothetical protein Bd0244 1 None None None 42525017 Pathogen - hypothetical protein Bd3680 1 None None None 42524343 Common - hypothetical protein Bd2940 25 None None None 42524654 Pathogen - hypothetical protein Bd3282 1 None None None 42522659 Common - ABC-type antimicrobial peptide transporter, ATPase component Bd1111 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 42521675 Pathogen - hypothetical protein Bd0027 1 None None None 42522535 Common - 3-methyl-2-oxobutanoate dehydrogenase Bd0972 155 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 42522687 Common acrD acriflavin resistance protein Bd1145 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 42523007 Common msbB lipid A biosynthesis lauroyl acyltransferase Bd1500 132 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 42523482 Common nlpD4 hypothetical protein Bd2006 195 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 42521775 Common nodI Nod factor export ATP-binding protein I Bd0138 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42524297 Common serA D-3-phosphoglycerate dehydrogenase Bd2892 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 42522937 Common potC spermidine/putrescine transport system permease protein Bd1421 142 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 42524502 Pathogen - hypothetical protein Bd3115 1 None None None 42524123 Common rplY 50S ribosomal protein L25 Bd2705 168 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 42524169 Common - probable ribulose-phosphate 3-epimerase Bd2756 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 42522698 Pathogen - hypothetical protein Bd1156 1 None None None 42521822 Common NifU putative nitrogen-fixing protein NifU Bd0190 54 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 42522259 Common - hypothetical protein Bd0672 7 None None None 42523413 Pathogen - hypothetical protein Bd1935 1 None None None 42523093 Common - putative general secretion pathway protein J precursor Bd1588 4 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 42523185 Common - putative polysaccharide biosynthesis protein CpsL Bd1688 71 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 42523147 Pathogen - hypothetical protein Bd1645 1 None None None 42524470 Pathogen - putative serine proteinase Bd3079 1 None None None 42525005 Common - hypothetical protein Bd3666 74 COG0640 ArsR, Predicted transcriptional regulators Transcription 42522769 Common ctpA carboxy-terminal processing protease Bd1239 149 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 42524338 Pathogen - hypothetical protein Bd2935 1 None None None 42523072 Common - hypothetical protein Bd1567 138 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 42525152 Common ygcA hypothetical RNA methyltransferase Bd3828 198 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 42522107 Common alaS hypothetical protein Bd0501 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42523418 Common - Fe-S oxidoreductase Bd1940 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 42523266 Common lysA hypothetical protein Bd1777 218 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 42521801 Common ftsE cell-division ATP-binding protein Bd0165 249 COG2884 FtsE, Predicted ATPase involved in cell division Cell division and chromosome partitioning 42523177 Common - putative aminotransferase Bd1679 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 42524227 Common ugpQ hypothetical protein Bd2817 108 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 42523106 Common - hypothetical protein Bd1601 5 None None None 42524603 Common - hypothetical protein Bd3224 30 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 42521932 Common - putative pirin-related protein Bd0309 148 COG1741 COG1741, Pirin-related protein General function prediction only 42522010 Common - putative periplasmic protein TonB Bd0396 3 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42522287 Pathogen - hypothetical protein Bd0701 1 None None None 42525190 Common - zinc protease Bd3869 202 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 42522119 Common - putative uroporphyrin-III C-methyltransferase Bd0515 77 COG3189 COG3189, Uncharacterized conserved protein Function unknown 42523207 Common - hypothetical protein Bd1711 31 COG3021 COG3021, Uncharacterized protein conserved in bacteria Function unknown 42524712 Pathogen - hypothetical protein Bd3345 1 None None None 42523851 Common sodB hypothetical protein Bd2407 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 42522505 Pathogen - hypothetical protein Bd0938 1 None None None 42522541 Common pyrE hypothetical protein Bd0979 200 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 42523720 Common - hypothetical protein Bd2263 68 COG2170 COG2170, Uncharacterized conserved protein Function unknown 42523480 Pathogen - hypothetical protein Bd2004 1 None None None 42524950 Common - hypothetical protein Bd3606 17 COG0729 COG0729, Outer membrane protein Cell envelope biogenesis, outer membrane 42522235 Common - transcriptional regulator, MarR family Bd0646 63 COG1846 MarR, Transcriptional regulators Transcription 42522020 Pathogen - hypothetical protein Bd0406 1 None None None 42522219 Common - Trypsin Bd0629 22 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42522194 Common - putative ribosephosphate isomerase Bd0601 21 None None None 42521992 Pathogen - hypothetical protein Bd0378 1 None None None 42523346 Common feoA putative ferrous iron transport protein A Bd1866 6 COG1918 FeoA, Fe2+ transport system protein A Inorganic ion transport and metabolism 42524192 Pathogen - hypothetical protein Bd2782 1 None None None 42524216 Pathogen - hypothetical protein Bd2806 1 None None None 42521734 Pathogen - hypothetical protein Bd0089 1 None None None 42522859 Common ahcY S-adenosyl-L-homocysteine hydrolase Bd1339 178 COG0499 SAM1, S-adenosylhomocysteine hydrolase Coenzyme metabolism 42524211 Common spoVG regulatory protein SpoVG Bd2801 24 COG2088 SpoVG, Uncharacterized protein, involved in the regulation of septum location Cell envelope biogenesis, outer membrane 42524466 Pathogen - hypothetical protein Bd3074 1 None None None 42524423 Common - hypothetical protein Bd3028 11 None None None 42525047 Pathogen - hypothetical protein Bd3714 1 None None None 42522154 Common - thioesterase Bd0556 20 COG0824 FcbC, Predicted thioesterase General function prediction only 42523667 Common phr deoxyribodipyrimidine photolyase-class I Bd2206 133 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 42525208 Common nuoM NADH dehydrogenase I chain M Bd3887 210 COG1008 NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) Energy production and conversion 42523224 Common yvfR ABC transporter, ATP-binding protein Bd1728 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42522944 Pathogen - hypothetical protein Bd1428 1 None None None 42521771 Common lysC aspartate kinase III Bd0134 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 42524252 Common - hypothetical protein Bd2844 117 COG2606 EbsC, Uncharacterized conserved protein Function unknown 42522318 Common pfkB Carbohydrate kinase, PfkB family Bd0734 18 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 42521954 Common ndh NADH dehydrogenase Bd0332 202 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 42525085 Pathogen - hypothetical protein Bd3757 1 None None None 42523054 Common infB translation initiation factor IF-2 Bd1547 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 42523779 Common parA Partition protein, ParA homolog Bd2331 228 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 42522239 Common - hypothetical protein Bd0651 221 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 42524460 Common - acyl-CoA desaturase Bd3068 66 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 42524959 Common - probable spermidine synthase Bd3616 120 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 42522998 Common prfB hypothetical protein Bd1489 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 42522487 Common hspC small heat shock protein Bd0917 155 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 42523624 Pathogen - hypothetical protein Bd2159 1 COG4272 COG4272, Predicted membrane protein Function unknown 42522303 Pathogen - hypothetical protein Bd0718 1 None None None 42523784 Common sseA thiosulfate sulfurtransferase Bd2337 36 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 42522032 Pathogen - hypothetical protein Bd0418 1 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 42523656 Common - hypothetical protein Bd2194 6 None None None 42525171 Common rpmA 50S ribosomal protein L27 Bd3848 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 42523222 Pathogen - hypothetical protein Bd1726 1 None None None 42523500 Common xer probable bacteriophage integrase or recombinase Bd2025 116 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 42523086 Pathogen - hypothetical protein Bd1581 1 None None None 42523372 Pathogen - hypothetical protein Bd1892 1 None None None 42523249 Common kdpA potassium-transporting ATPase, A subunit Bd1757 93 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 42523731 Pathogen - spb1 gene forserine protease (AJ428902) related protein Bd2274 1 None None None 42525159 Pathogen - hypothetical protein Bd3835 1 None None None 42522694 Common pqiB hypothetical protein Bd1152 56 COG3008 PqiB, Paraquat-inducible protein B General function prediction only 42522027 Common - hypothetical protein Bd0413 4 None None None 42522519 Common infA translation initiation factor IF-1 Bd0953 121 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 42523540 Common - hypothetical protein Bd2068 123 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 42522780 Common - heat-shock protein HSP33 homologue Bd1255 129 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 42522693 Pathogen - hypothetical protein Bd1151 1 None None None 42521697 Common talC putative translaldolase Bd0049 157 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 42522243 Common hly3 hemolysin III Bd0656 119 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 42525010 Common - hypothetical protein Bd3673 39 COG3607 COG3607, Predicted lactoylglutathione lyase General function prediction only 42522726 Common tyrS tyrosyl-tRNA synthetase Bd1189 239 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42522523 Pathogen - hypothetical protein Bd0957 1 None None None 42523509 Pathogen - hypothetical protein Bd2035 1 COG3236 COG3236, Uncharacterized protein conserved in bacteria Function unknown 42524271 Common top6A DNA topoisomerase VI subunit A Bd2864 34 COG1697 COG1697, DNA topoisomerase VI, subunit A DNA replication, recombination, and repair 42524377 Common fusA elongation factor EF-G Bd2979 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 42525026 Common - alpha/beta hydrolase superfamily protein Bd3689 70 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 42525198 Pathogen - hypothetical protein Bd3877 1 None None None 42522058 Common - putative protease Bd0449 2 None None None 42524001 Pathogen - putative transposase Bd2578 1 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 42524359 Common - hypothetical protein Bd2957 26 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 42522782 Common - hypothetical protein Bd1257 79 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 42523010 Common - putative heptosyltransferase Bd1503 16 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 42523164 Pathogen - hypothetical protein Bd1664 1 None None None 42523240 Common - putative erythromycin esterase Bd1746 31 COG2312 COG2312, Erythromycin esterase homolog General function prediction only 42523516 Pathogen - hypothetical protein Bd2043 1 None None None 42522963 Common - cell wall surface anchor family protein Bd1449 100 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 42522255 Common - hypothetical protein Bd0668 8 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42522737 Common spoU putative RNA methylase Bd1203 196 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 42523491 Common - hypothetical protein Bd2016 2 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 42524856 Common - phosphoesterase Bd3503 102 COG1408 COG1408, Predicted phosphohydrolases General function prediction only 42521845 Common radC putative DNA repair protein Bd0218 175 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 42522818 Pathogen - hypothetical protein Bd1295 1 COG3549 HigB, Plasmid maintenance system killer protein General function prediction only 42522727 Common - hypothetical protein Bd1190 13 COG3894 COG3894, Uncharacterized metal-binding protein General function prediction only 42524566 Common - hypothetical protein Bd3184 2 None None None 42521893 Common - hypothetical protein Bd0269 5 None None None 42522751 Pathogen - hypothetical protein Bd1219 1 None None None 42524969 Common - hypothetical protein Bd3626 2 None None None 42522498 Common pfpI ThiJ/PfpI family protein Bd0930 50 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 42521868 Pathogen - hypothetical protein Bd0243 1 None None None 42522669 Common - esterase/lipase/thioesterase family protein Bd1121 67 COG0429 COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 42521818 Common sufB cysteine desulfurase activator complex subunit SufB Bd0186 184 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 42523312 Common - Acyl-CoA thioester hydrolase Bd1827 137 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 42523804 Common - putative RNA pseudouridylate synthase Bd2358 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 42522262 Pathogen - hypothetical protein Bd0675 1 None None None 42522906 Pathogen - hypothetical protein Bd1387 1 None None None 42524637 Pathogen - hypothetical protein Bd3262 1 None None None 42521730 Common - cytidine/deoxycytidylate deaminase family protein Bd0085 217 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 42525124 Pathogen - hypothetical protein Bd3798 1 None None None 42523980 Common apaG ApaG Bd2556 89 COG2967 ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport Inorganic ion transport and metabolism 42524367 Common rpmC 50S ribosomal protein L29 Bd2968 34 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 42524404 Common purE phosphoribosylaminoimidazole carboxylase catalytic subunit Bd3008 222 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 42523770 Common - Subtilisin-like serine protease Bd2321 63 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42524251 Common - two-component hybrid sensor and regulator Bd2843 222 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 42523805 Pathogen - hypothetical protein Bd2359 1 None None None 42523090 Common pilM putative type 4 fimbrial biogenesis protein PilM Bd1585 19 COG4972 PilM, Tfp pilus assembly protein, ATPase PilM Cell motility and secretion / Intracellular trafficking and secretion 42523289 Common - putative high potential iron-sulfur protein (HiPIP) Bd1802 5 None None None 42525116 Common - hypothetical protein Bd3790 12 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 42522708 Common - hypothetical protein Bd1168 5 None None None 42523324 Common - hypothetical protein Bd1839 4 None None None 42522775 Pathogen - hypothetical protein Bd1248 1 None None None 42523793 Common - hypothetical protein Bd2347 53 COG3217 COG3217, Uncharacterized Fe-S protein General function prediction only 42523923 Common - hypothetical protein Bd2494 45 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 42525114 Common - glycoprotein endopeptidase Bd3788 185 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 42523141 Common himA integration host factor, alpha subunit Bd1639 205 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 42523085 Pathogen - hypothetical protein Bd1580 1 None None None 42522504 Pathogen - hypothetical protein Bd0937 1 None None None 42523748 Common - Heavy-metal transporting CPX-type ATPase Bd2297 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 42524477 Common - protease Bd3087 136 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42524526 Pathogen - hypothetical protein Bd3141 1 None None None 42521726 Common cyaB adenylate cyclase, putative Bd0081 4 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 42522004 Pathogen - hypothetical protein Bd0390 1 None None None 42522401 Common glnH Glutamine transport system substrate-binding protein Bd0825 174 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42524419 Common - putative secreted protein Bd3024 16 None None None 42524876 Common - Exodeoxyribonuclease III Bd3524 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 42524738 Common - putative prolipoprotein diacylglycerol transferase Bd3375 136 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 42525096 Common - hypothetical protein Bd3768 17 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42522314 Common - putative RNA-binding protein Bd0729 6 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 42524919 Common tonB TonB-like protein Bd3570 14 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42525145 Common - hypothetical protein Bd3821 17 None None None 42523241 Pathogen - hypothetical protein Bd1747 1 None None None 42524613 Pathogen - hypothetical protein Bd3236 1 None None None 42524766 Common flgB flagellar basal-body rod protein FlgB Bd3407 95 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 42524266 Common - hypothetical protein Bd2859 47 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 42523862 Common - putative integral membrane protein containing HD domain Bd2421 122 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 42524330 Pathogen - hypothetical protein Bd2925 1 None None None 42524857 Pathogen - hypothetical protein Bd3504 1 None None None 42522941 Common - transcriptional regulator Bd1425 46 COG1846 MarR, Transcriptional regulators Transcription 42524619 Common - transcriptional regulator Bd3242 68 COG1309 AcrR, Transcriptional regulator Transcription 42522752 Common - hypothetical protein Bd1220 2 None None None 42525165 Common lolA outer membrane lipoprotein carrier protein Bd3842 4 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 42524383 Pathogen - hypothetical protein Bd2986 1 None None None 42522279 Common - Major facilitator family transporter Bd0693 187 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42522973 Common purA adenylosuccinate synthetase Bd1460 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 42523658 Pathogen tatE twin-argine protein translocase component Bd2196 1 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 42522212 Common - putative response regulator Bd0621 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42524397 Common purM phosphoribosylaminoimidazole synthetase Bd3001 232 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 42521941 Common - hypothetical protein Bd0319 2 None None None 42523588 Common rimM putative 16S rRNA processing protein Bd2120 76 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 42523673 Pathogen - hypothetical protein Bd2212 1 None None None 42523741 Common - hypothetical protein Bd2288 13 None None None 42523515 Pathogen - hypothetical protein Bd2042 1 None None None 42524567 Common hmgA homogentisate 1,2-dioxygenase Bd3185 49 COG3508 HmgA, Homogentisate 1,2-dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 42523785 Common lysS lysyl-tRNA synthetase Bd2338 249 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 42521721 Common - hypothetical protein Bd0075 121 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 42522841 Common - hypothetical protein Bd1320 8 None None None 42523978 Common pepA cytosol aminopeptidase Bd2554 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 42524114 Pathogen - hypothetical protein Bd2696 1 None None None 42522414 Common nrtD ABC-type nitrate transporter, ATPase component Bd0842 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 42521846 Common - putative lipoprotein Bd0220 27 COG3417 FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) General function prediction only 42522435 Common pilM fimbrial assembly membrane protein Bd0863 93 COG4972 PilM, Tfp pilus assembly protein, ATPase PilM Cell motility and secretion / Intracellular trafficking and secretion 42524207 Common - putative Mg chelatase Bd2797 179 COG0714 COG0714, MoxR-like ATPases General function prediction only 42524699 Common - hypothetical protein Bd3330 53 COG3237 COG3237, Uncharacterized protein conserved in bacteria Function unknown 42522701 Pathogen - hypothetical protein Bd1160 1 COG4102 COG4102, Uncharacterized protein conserved in bacteria Function unknown 42523576 Common - hypothetical protein Bd2106 13 COG3016 PhuW, Uncharacterized iron-regulated protein Function unknown 42525057 Pathogen - hypothetical protein Bd3726 1 None None None 42522470 Common adhA NADP-dependent alcohol dehydrogenase Bd0900 203 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 42524998 Common - hypothetical protein Bd3657 33 COG3809 COG3809, Uncharacterized protein conserved in bacteria Function unknown 42522406 Common - hypothetical protein Bd0831 4 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 42522582 Common gldA ATP-binding protein of ABC transporter Bd1023 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42522476 Common - hypothetical protein Bd0906 28 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 42523282 Common - hypothetical protein Bd1794 24 None None None 42523256 Common tdcF putative translation initiation inhibitor Bd1766 185 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 42523494 Common slc39 solute carrier family 39 (iron-regulated transporter) Bd2019 4 COG2270 COG2270, Permeases of the major facilitator superfamily General function prediction only 42521966 Pathogen - hypothetical protein Bd0346 1 COG5077 COG5077, Ubiquitin carboxyl-terminal hydrolase Posttranslational modification, protein turnover, chaperones 42521852 Pathogen - hypothetical protein Bd0226 1 None None None 42524154 Pathogen - hypothetical protein Bd2739 1 None None None 42525046 Common - putative LysR-family transcriptional regulator Bd3712 165 COG0583 LysR, Transcriptional regulator Transcription 42522475 Common ABC1 putative ABC transporter Bd0905 164 COG0661 AarF, Predicted unusual protein kinase General function prediction only 42524945 Pathogen - hypothetical protein Bd3601 1 None None None 42522374 Common catA hypothetical protein Bd0798 126 COG0753 KatE, Catalase Inorganic ion transport and metabolism 42521694 Common dapA dihydrodipicolinate synthase Bd0046 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 42522405 Common - hypothetical protein Bd0829 3 None None None 42524776 Pathogen - hypothetical protein Bd3417 1 None None None 42521901 Pathogen - hypothetical protein Bd0278 1 None None None 42523319 Common - NADP-dependent malate dehydrogenase Bd1834 183 COG0281 SfcA, Malic enzyme Energy production and conversion 42524732 Pathogen - hypothetical protein Bd3369 1 None None None 42524012 Common - transcriptional regulatory protein Bd2590 165 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42522793 Pathogen - hypothetical protein Bd1269 1 None None None 42523627 Common - sugar transport protein Bd2163 178 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42524750 Pathogen - hypothetical protein Bd3391 1 None None None 42524278 Pathogen - hypothetical protein Bd2871 1 None None None 42524927 Common - enoyl-CoA hydratase/isomerase family protein Bd3579 175 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 42524298 Common dctD transcriptional regulator Bd2893 171 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42524911 Common panC pantothenate synthetase Bd3561 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 42522356 Common - ABC-transporter, periplasmic domain Bd0777 12 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42522222 Common - hypothetical protein Bd0632 13 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 42522288 Common - lysyl-tRNA synthetase Bd0702 228 COG2269 COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 42523402 Common - hypothetical protein Bd1924 3 None None None 42523366 Pathogen - hypothetical protein Bd1886 1 None None None 42523306 Common - poly A polymerase Bd1820 214 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 42524693 Common fliQ flagellar biosynthetic protein FliQ Bd3324 128 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 42523687 Pathogen - hypothetical protein Bd2229 1 None None None 42522320 Common choA putative cholesterol oxidase Bd0736 67 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 42521668 Common ppiD hypothetical protein Bd0019 152 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 42524533 Common pkn hypothetical protein Bd3148 149 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 42524118 Common rph ribonuclease PH Bd2700 180 COG0689 Rph, RNase PH Translation, ribosomal structure and biogenesis 42521812 Common aglW Adventurous gliding motility protein W Bd0179 153 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 42524441 Pathogen - hypothetical protein Bd3049 1 None None None 42521955 Common - ampG protein Bd0333 108 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 42523645 Pathogen - hypothetical protein Bd2183 1 None None None 42524380 Common rpoC DNA-directed RNA polymerase, beta' subunit Bd2983 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 42523691 Common secF protein-export membrane protein SecF Bd2233 213 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 42524576 Pathogen - hypothetical protein Bd3194 1 None None None 42523399 Common - hypothetical protein Bd1921 30 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 42522068 Pathogen - hypothetical protein Bd0460 1 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 42524892 Pathogen - hypothetical protein Bd3540 1 None None None 42523949 Common folE GTP cyclohydrolase I Bd2522 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 42523459 Pathogen - hypothetical protein Bd1982 1 None None None 42523464 Common - amino acid ABC transporter, periplasmic Bd1987 10 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42524158 Common - hypothetical protein Bd2743 2 None None None 42524623 Pathogen - hypothetical protein Bd3247 1 None None None 42523458 Pathogen - hypothetical protein Bd1981 1 None None None 42523546 Common yvbT lkanal monooxygenase homolog yvbT Bd2074 112 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 42522085 Common tolQ tolQ protein Bd0477 150 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 42523442 Common - hypothetical protein Bd1965 48 COG2833 COG2833, Uncharacterized protein conserved in bacteria Function unknown 42524166 Common hutH hypothetical protein Bd2753 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 42524054 Common xdhB xanthine dehydrogenase, C-terminal subunit Bd2634 109 COG4631 XdhB, Xanthine dehydrogenase, molybdopterin-binding subunit B Nucleotide transport and metabolism 42523828 Pathogen - hypothetical protein Bd2382 1 None None None 42523150 Common - putative permease Bd1648 82 COG0628 PerM, Predicted permease General function prediction only 42522579 Common - hypothetical protein Bd1019 207 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 42522862 Common - putative DNA alkylation repair enzyme Bd1342 35 COG4335 COG4335, DNA alkylation repair enzyme DNA replication, recombination, and repair 42524320 Pathogen - hypothetical protein Bd2915 1 None None None 42523750 Common comM competence protein ComM homolog Bd2299 187 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 42522176 Common - 2-hydroxymuconic semialdehyde dehydrogenase Bd0581 219 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 42522459 Common acrF acriflavin resistance protein Bd0888 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 42523234 Common - putative glycosyl transferase Bd1739 105 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42522953 Common - membrane protein Bd1437 119 COG2855 COG2855, Predicted membrane protein Function unknown 42523709 Common - DegT/DnrJ/EryC1/StrS family protein Bd2251 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 42521714 Common rpmE 50S ribosomal protein L31 Bd0068 160 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 42524513 Common nadB L-aspartate oxidase Bd3127 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 42524869 Common - hypothetical protein Bd3517 81 COG1956 COG1956, GAF domain-containing protein Signal transduction mechanisms 42522570 Common ppk polyphosphate kinase Bd1010 162 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 42523766 Pathogen - hypothetical protein Bd2315 1 None None None 42524688 Common fleN flagellar biosynthesis switch protein Bd3319 241 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 42523274 Common - hypothetical protein Bd1786 7 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42522397 Common - hypothetical protein Bd0821 12 COG5036 COG5036, SPX domain-containing protein involved in vacuolar polyphosphate accumulation Inorganic ion transport and metabolism 42766907 Common - ribosomal protein L36 Bd2953.1 137 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 42523465 Common - hypothetical protein Bd1988 7 None None None 42523964 Pathogen - hypothetical protein Bd2539 1 None None None 42524033 Common fixP cytochrome-c oxidase fixP chain Bd2613 70 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 42524509 Common - ABC-type organic solvent resistance transport system permease protein Bd3123 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 42522202 Pathogen - hypothetical protein Bd0609 1 None None None 42522242 Pathogen - hypothetical protein Bd0655 1 None None None 42522559 Pathogen - hypothetical protein Bd0998 1 None None None 42524801 Common hemB delta-aminolevulinic acid dehydratase Bd3444 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 42521676 Pathogen - hypothetical protein Bd0028 1 None None None 42524286 Common - putative regulatory protein Bd2879 6 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42522017 Pathogen - hypothetical protein Bd0403 1 None None None 42523872 Common - hypothetical protein Bd2431 13 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 42522340 Common - methionine sulfoxide reductase B Bd0757 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 42524024 Pathogen - hypothetical protein Bd2604 1 None None None 42524235 Common - hypothetical protein Bd2826 15 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 42524973 Common hspA low molecular weight heat shock protein Bd3630 153 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 42522093 Common - hypothetical protein Bd0485 8 None None None 42524489 Pathogen - hypothetical protein Bd3100 1 None None None 42521749 Common - similar to cell wall-associated protein precursor wapA Bd0109 17 None None None 42522920 Common - hypothetical protein Bd1402 25 None None None 42524161 Pathogen - hypothetical protein Bd2747 1 None None None 42524059 Common - hypothetical protein Bd2639 2 None None None 42524179 Common - outer membrane protein Bd2767 80 COG2968 COG2968, Uncharacterized conserved protein Function unknown 42521706 Common gatA glutamyl-tRNA(Gln) amidotransferase, A subunit Bd0059 221 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 42523725 Pathogen - spb1 gene forserine protease (AJ428902) related protein Bd2268 1 None None None 42523954 Pathogen - hypothetical protein Bd2528 1 None None None 42523437 Common - hypothetical protein Bd1960 3 None None None 42525091 Common - putative arsenical pump-driving ATPase Bd3763 16 COG0003 ArsA, Predicted ATPase involved in chromosome partitioning Cell division and chromosome partitioning 42524202 Common - hypothetical protein Bd2792 5 None None None 42522182 Pathogen - hypothetical protein Bd0588 1 None None None 42521762 Common - putative TPR domain protein Bd0123 78 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 42524746 Common - branched-chain amino acid ABC transporter, permease protein Bd3387 160 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 42522189 Common thiQ ABC-type thiamine transport protein, ATP-binding Bd0595 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 42522385 Common kpsF polysialic acid capsule expression protein Bd0809 160 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 42524907 Common atsC short chain dehydrogenase Bd3556 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 42525216 Common - Beta-hexosamidase A precursor Bd3895 180 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 42522741 Common lemA probable lipoprotein Bd1207 130 COG1704 LemA, Uncharacterized conserved protein Function unknown 42522875 Common - hypothetical protein Bd1356 62 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 42522151 Pathogen - hypothetical protein Bd0552 1 None None None 42522188 Common thiP thiamine transport system permease protein ThiP Bd0594 85 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 42524400 Common purL phosphoribosylformylglycinamidine synthase II Bd3004 233 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 42523665 Common gloB hydroxyacylglutathione hydrolase GloB Bd2204 197 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 42523941 Common - hypothetical protein Bd2514 31 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 42523611 Common lon ATP-dependent protease LA Bd2144 212 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 42523067 Common - putative glycosyl transferase Bd1561 172 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42521920 Common pbpC bifunctional penicillin-binding protein Bd0297 200 COG4953 PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC Cell envelope biogenesis, outer membrane 42524106 Common pyrC dihydroorotase Bd2688 209 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 42524478 Common - hypothetical protein Bd3088 119 COG2353 COG2353, Uncharacterized conserved protein Function unknown 42524327 Pathogen - hypothetical protein Bd2922 1 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 42524094 Common - hypothetical protein Bd2676 14 None None None 42522813 Common pilA fimbrial protein pilA Bd1290 80 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 42522425 Common lepB hypothetical protein Bd0853 209 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 42524678 Common cpaF Flp pilus assembly protein, ATPase Bd3307 224 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 42524105 Pathogen - hypothetical protein Bd2687 1 None None None 42522678 Common yapH putative YapH protein Bd1130 65 None None None 42525232 Common yidC 60 KD inner-membrane protein Bd3912 212 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 42522197 Common hag flagellin Bd0604 115 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 42522821 Common dnaK Chaperone protein dnaK Bd1298 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 42524749 Common - hypothetical protein Bd3390 34 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 42524147 Common lpdA dihydrolipoamide dehydrogenase Bd2731 242 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 42524444 Common flgL flagellin Bd3052 121 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 42522164 Pathogen - hypothetical protein Bd0567 1 None None None 42524096 Common - hypothetical protein Bd2678 16 COG0582 XerC, Integrase DNA replication, recombination, and repair 42524673 Pathogen - hypothetical protein Bd3302 1 None None None 42524457 Common - hypothetical protein Bd3065 13 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 42521789 Common - mannose-1-phosphate guanyltransferase Bd0153 136 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 42522572 Pathogen - hypothetical protein Bd1012 1 None None None 42523841 Pathogen - hypothetical protein Bd2396 1 None None None 42521924 Common - hypothetical protein Bd0301 11 COG2198 ArcB, FOG: HPt domain Signal transduction mechanisms 42523004 Common - oxidoreductase family protein Bd1496 129 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 42524636 Pathogen - hypothetical protein Bd3261 1 None None None 42525202 Pathogen - hypothetical protein Bd3881 1 None None None 42523409 Common glmM phosphoglucosamine mutase Bd1931 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 42524306 Common - hypothetical protein Bd2901 2 None None None 42522272 Common - putative SAM-dependent methyltransferase Bd0685 6 COG2384 COG2384, Predicted SAM-dependent methyltransferase General function prediction only 42525140 Common - ABC-type anti-microbial peptide transporter, ATP-binding protein Bd3816 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 42522656 Common hisS histidyl-tRNA synthetase Bd1107 248 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42524810 Common hemH Ferrochelatase Bd3456 156 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 42524862 Pathogen - hypothetical protein Bd3509 1 None None None 42525183 Common - putative methylmalonyl-CoA decarboxylase, gamma-subunit Bd3862 150 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 42521827 Common xseA exodeoxyribonuclease VII, large subunit Bd0197 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 42524662 Common ydzA hypothetical protein Bd3290 23 None None None 42521664 Common pmm hypothetical protein Bd0014 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 42522564 Pathogen - hypothetical protein Bd1003 2 None None None 42521774 Common typA GTP-binding elongation factor:elongation factor Tu domain Bd0137 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 42524562 Common nudF ADP-ribose pyrophosphatase Bd3179 162 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 42522534 Pathogen - putative secreted esterase Bd0970 1 None None None 42524168 Common - putative ATP/GTP-binding protein Bd2755 49 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 42524544 Common - putative dehydrogenase Bd3160 29 COG5322 COG5322, Predicted dehydrogenase General function prediction only 42521999 Common - hypothetical protein Bd0385 10 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 42524029 Common - cation transport ATPase, E1-E2 family Bd2609 230 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 42524256 Common gloA lactoylglutathione lyase Bd2848 119 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 42523982 Pathogen - hypothetical protein Bd2559 1 None None None 42523678 Common mutT Nudix (MutT) family hydrolase/pyrophosphatase Bd2220 172 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 42522921 Common - putative glyoxalase Bd1403 34 COG3324 COG3324, Predicted enzyme related to lactoylglutathione lyase General function prediction only 42523657 Pathogen - hypothetical protein Bd2195 1 None None None 42521659 Common atpB ATP synthase F0, A subunit Bd0009 189 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 42522115 Common pgpA phosphatidylglycerophosphatase A Bd0509 105 COG1267 PgpA, Phosphatidylglycerophosphatase A and related proteins Lipid metabolism 42523688 Common - hypothetical protein Bd2230 16 COG2029 COG2029, Uncharacterized conserved protein Function unknown 42523993 Common ybbB tRNA 2-selenouridine synthase Bd2570 65 COG2603 COG2603, Predicted ATPase General function prediction only 42524122 Common prs ribose-phosphate pyrophosphokinase Bd2704 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 42522026 Common - hypothetical protein Bd0412 2 None None None 42522588 Common - methyltransferase Bd1029 124 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 42524718 Common - Metallo-beta-lactamase superfamily protein Bd3353 38 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 42523332 Pathogen - hypothetical protein Bd1848 1 None None None 42523120 Pathogen - hypothetical protein Bd1616 1 None None None 42522127 Pathogen - hypothetical protein Bd0523 1 None None None 42524009 Pathogen - hypothetical protein Bd2587 1 None None None 42523127 Pathogen - 50S ribosomal protein L35 Bd1624 1 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 42524148 Pathogen - hypothetical protein Bd2733 1 None None None 42522929 Common deaD ATP-dependent RNA helicase Bd1412 238 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 42525018 Common yejH putative ATP-dependent helicase Bd3681 158 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 42521795 Common uvrA excinuclease ABC subunit A Bd0159 245 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 42521964 Common - putative translation factor related to Sua5 Bd0344 237 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 42523961 Common - putative serine protease Bd2535 21 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42521838 Common - putative hemagglutinin/hemolysin-related protein Bd0209 46 None None None 42522086 Common tolR TonB system transport protein ExbD2 Bd0478 35 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 42523520 Pathogen - hypothetical protein Bd2047 1 None None None 42525073 Common - hypothetical protein Bd3743 6 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42523751 Common xerD integrase/recombinase XerD Bd2300 220 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 42524887 Pathogen - hypothetical protein Bd3535 1 None None None 42525002 Common - predicted phosphohydrolase Bd3662 9 COG1409 Icc, Predicted phosphohydrolases General function prediction only 42524988 Common - predicted membrane protein Bd3647 11 COG5164 SPT5, Transcription elongation factor Transcription 42524241 Common - hypothetical protein Bd2832 17 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42522593 Common - putative lipoprotein LipL45 Bd1035 3 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42522686 Common ybaN hypothetical protein Bd1144 61 COG2832 COG2832, Uncharacterized protein conserved in bacteria Function unknown 42523539 Common - glutathione S-transferase family protein Bd2066 102 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 42522778 Common - hypothetical protein Bd1253 177 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 42522827 Common - putative permease Bd1305 18 COG0730 COG0730, Predicted permeases General function prediction only 42522278 Common - glycine dehydrogenase Bd0692 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 42524936 Common drrB ABC-type transport system, permease component Bd3591 32 COG4587 COG4587, ABC-type uncharacterized transport system, permease component General function prediction only 42522668 Common - hypothetical protein Bd1120 12 None None None 42522761 Pathogen - hypothetical protein Bd1231 1 None None None 42523898 Pathogen - hypothetical protein Bd2463 1 None None None 42521910 Common ctaD cytochrome c oxidase subunit I Bd0287 169 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 42523718 Pathogen - hypothetical protein Bd2261 1 None None None 42524834 Common - Secreted trypsin-like serine protease Bd3481 23 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42524019 Common norD norD protein Bd2597 44 COG4548 NorD, Nitric oxide reductase activation protein Inorganic ion transport and metabolism 42523548 Common - hypothetical protein Bd2076 5 None None None 42522877 Common - putative peptidoglycan-binding protein Bd1358 74 COG2989 COG2989, Uncharacterized protein conserved in bacteria Function unknown 42521887 Pathogen - hypothetical protein Bd0263 1 None None None 42524534 Common - long-chain fatty-acid-CoA ligase Bd3149 215 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 42521894 Common cspR rRNA methyltransferase Bd0271 156 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 42523158 Common pstS Periplasmic phosphate-binding protein of ABC transporter Bd1658 146 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 42523771 Pathogen - hypothetical protein Bd2322 1 None None None 42525148 Pathogen - hypothetical protein Bd3824 1 None None None 42523378 Common - Sensory transduction histidine kinase Bd1899 222 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 42523834 Pathogen - hypothetical protein Bd2388 1 None None None 42524868 Common yfeR transcriptional regulator, LysR family Bd3516 177 COG0583 LysR, Transcriptional regulator Transcription 42522121 Common - hypothetical protein Bd0517 6 None None None 42524931 Common - hypothetical protein Bd3584 35 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 42522938 Common - MDR-type permease Bd1422 78 COG2270 COG2270, Permeases of the major facilitator superfamily General function prediction only 42523817 Pathogen - hypothetical protein Bd2371 1 None None None 42522640 Pathogen - hypothetical protein Bd1087 1 None None None 42523670 Common frpC hemolysin-type calcium binding protein / bacteriocin Bd2209 27 None None None 42522200 Common - hypothetical protein Bd0607 15 None None None 42522109 Common - predicted phosphohydrolase Bd0503 109 COG1408 COG1408, Predicted phosphohydrolases General function prediction only 42524708 Pathogen - hypothetical protein Bd3340 1 None None None 42524221 Pathogen - hypothetical protein Bd2811 1 COG2267 PldB, Lysophospholipase Lipid metabolism 42524184 Pathogen - hypothetical protein Bd2774 1 None None None 42524382 Pathogen - hypothetical protein Bd2985 1 None None None 42522060 Common - hypothetical protein Bd0451 98 COG1720 COG1720, Uncharacterized conserved protein Function unknown 42524901 Common - rhodanese-related sulfurtransferase Bd3549 156 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 42522931 Common - ABC transporter, ATP-binding protein Bd1414 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42523568 Common - hypothetical protein Bd2098 77 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42522073 Common proC hypothetical protein Bd0465 210 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 42525060 Pathogen - hypothetical protein Bd3730 1 None None None 42523219 Common - putative octaprenyl-diphosphate synthase Bd1723 137 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 42522987 Common - hypothetical protein Bd1476 4 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42524319 Common glpT glycerol-3-phosphate transporter Bd2914 45 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 42524951 Common - hypothetical protein Bd3607 18 None None None 42525058 Common blc outer membrane lipoprotein Blc Bd3727 72 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 42522810 Common htpX heat shock protein HtpX Bd1287 191 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 42523472 Pathogen - hypothetical protein Bd1996 1 None None None 42524492 Common phnE ABC-type phosphonates transport system permease protein Bd3103 100 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 42523468 Pathogen - hypothetical protein Bd1991 1 None None None 42522092 Common asd aspartate-semialdehyde dehydrogenase Bd0484 235 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 42522846 Pathogen - hypothetical protein Bd1325 1 None None None 42523700 Pathogen - hypothetical protein Bd2242 1 None None None 42524552 Pathogen - hypothetical protein Bd3169 1 None None None 42522299 Pathogen - hypothetical protein Bd0713 1 None None None 42521809 Pathogen - hypothetical protein Bd0176 1 None None None 42522605 Common gapdh glyceraldehyde-3-phosphate dehydrogenase Bd1049 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 42524130 Common radA DNA repair protein RadA Bd2712 216 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 42521708 Common - hypothetical protein Bd0061 178 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 42523371 Common - NtrC family transcriptional regulator Bd1891 173 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 42524621 Common dacB D-Ala-D-Ala carboxypeptidase 3 (S13) family Bd3244 108 COG2027 DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) Cell envelope biogenesis, outer membrane 42524401 Common purN phosphoribosylglycinamide formyltransferase Bd3005 220 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 42524432 Common ribA GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase Bd3038 232 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 42523066 Pathogen - hypothetical protein Bd1559 1 None None None 42524468 Common ygjT putative transport protein Bd3076 101 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 42524775 Pathogen - hypothetical protein Bd3416 1 None None None 42522302 Common - glutamate dehydrogenase Bd0717 180 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 42522649 Pathogen - hypothetical protein Bd1100 1 None None None 42523161 Common pstB phosphate transport system ATP-binding protein Bd1661 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 42522856 Pathogen - hypothetical protein Bd1336 1 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 42524793 Common speB agmatinase Bd3436 140 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 42525011 Common - hypothetical protein Bd3674 20 None None None 42521889 Pathogen - hypothetical protein Bd0265 3 None None None 42521851 Common - hypothetical protein Bd0225 161 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 42523424 Common bsaA hypothetical protein Bd1947 116 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 42523501 Pathogen - hypothetical protein Bd2026 1 None None None 42523606 Common - two-component response regulator Bd2139 179 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 42523730 Pathogen - spb1 gene forserine protease (AJ428902) related protein Bd2273 1 None None None 42521698 Pathogen - hypothetical protein Bd0050 1 None None None 42522256 Pathogen - hypothetical protein Bd0669 1 None None None 42523605 Common rnhA hypothetical protein Bd2138 170 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 42522486 Common pacL Cation transporting ATPase Bd0916 232 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42522824 Common - putative molybdopterin biosynthesis protein Bd1302 67 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 42524352 Common rpoA DNA-directed RNA polymerase subunit alpha Bd2950 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 42525027 Common yicM putative transport protein Bd3690 120 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42525123 Pathogen - hypothetical protein Bd3797 1 None None None 42525108 Common tsf elongation factor Ts Bd3782 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 42522422 Common metK S-adenosylmethionine synthetase Bd0850 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 42521731 Common - hypothetical protein Bd0086 2 None None None 42524269 Pathogen - hypothetical protein Bd2862 1 None None None 42522979 Pathogen - hypothetical protein Bd1466 1 None None None 42522639 Common - hypothetical protein Bd1086 2 None None None 42522819 Common dnaJ DnaJ protein Bd1296 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 42524651 Common - putative polysaccharide deacetylase Bd3279 95 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 42522033 Common - putative Adventurous gliding motility protein V Bd0419 10 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 42523859 Common - hydrolase, alpha/beta fold family Bd2417 14 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42522962 Common - hypothetical protein Bd1448 6 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 42524376 Common rpsJ 30S ribosomal protein S10 Bd2978 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 42521925 Common phnD Phosphonates-binding protein Bd0302 91 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 42522695 Common pqiA paraquat-inducible protein A Bd1153 54 COG2995 PqiA, Uncharacterized paraquat-inducible protein A Function unknown 42524002 Common - hypothetical protein Bd2579 2 None None None 42523508 Common - isopenicillin N epimerase Bd2034 124 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 42522781 Pathogen - hypothetical protein Bd1256 1 None None None 42521729 Common - hypothetical protein Bd0084 2 None None None 42521835 Common - putative haloacid dehalogenase-like hydrolase Bd0205 9 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 42522897 Pathogen - hypothetical protein Bd1378 1 None None None 42523105 Pathogen - hypothetical protein Bd1600 1 None None None 42523180 Common neuB putative N-acetylneuraminic acid synthetase Bd1683 78 COG2089 SpsE, Sialic acid synthase Cell envelope biogenesis, outer membrane 42524337 Pathogen - hypothetical protein Bd2932 1 COG3889 COG3889, Predicted solute binding protein General function prediction only 42524844 Common - hypothetical protein Bd3491 4 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42523385 Pathogen - hypothetical protein Bd1906 1 None None None 42523733 Common - putative nucleic acid binding protein, containing KH domain Bd2276 15 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 42524248 Pathogen - hypothetical protein Bd2839 1 None None None 42525157 Common fdx hypothetical protein Bd3833 63 COG0633 Fdx, Ferredoxin Energy production and conversion 42524471 Common nuoI NADH dehydrogenase I chain I Bd3080 184 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 42524322 Pathogen - hypothetical protein Bd2917 1 None None None 42523417 Common trmU tRNA-methyltransferase Bd1939 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 42524424 Pathogen - hypothetical protein Bd3029 1 None None None 42522319 Pathogen - hypothetical protein Bd0735 1 None None None 42523915 Common - hypothetical protein Bd2485 46 COG4448 AnsA, L-asparaginase II Amino acid transport and metabolism 42523763 Common uvrB excinuclease ABC subunit B Bd2312 232 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 42525150 Pathogen - hypothetical protein Bd3826 1 None None None 42521802 Common ftsX hypothetical protein Bd0166 94 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 42522891 Common pepP aminopeptidase P Bd1372 218 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 42523092 Common - general secretory pathway protein K Bd1587 7 COG3156 PulK, Type II secretory pathway, component PulK Intracellular trafficking and secretion 42522055 Common - transcriptional regulatory protein Bd0446 131 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42522835 Common - Dihydrouridine synthase family protein Bd1314 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 42523559 Pathogen - hypothetical protein Bd2087 1 COG5406 COG5406, Nucleosome binding factor SPN, SPT16 subunit Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics 42522992 Common aglR Adventurous gliding motility protein R Bd1481 32 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 42523325 Common - putative permease Bd1840 85 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 42523590 Common rpsP 30S ribosomal protein S16 Bd2122 203 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 42522452 Common rpoE RNA polymerase sigma-E factor Bd0881 170 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 42523206 Common - hypothetical protein Bd1710 219 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 42521735 Pathogen - hypothetical protein Bd0090 1 None None None 42521933 Common - hypothetical protein Bd0310 10 None None None 42521666 Common surA survival protein SurA precursor Bd0017 159 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 42524011 Pathogen - hypothetical protein Bd2589 1 None None None 42524228 Pathogen - hypothetical protein Bd2818 1 None None None 42524781 Common - hypothetical protein Bd3422 2 None None None 42522159 Common rsbU sigmaB regulation protein RsbU Bd0561 17 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 42522213 Common - hypothetical protein Bd0622 213 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 42524960 Common sodB hypothetical protein Bd3617 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 42523292 Common bcp bacterioferritin comigratory protein Bd1805 206 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 42522447 Pathogen fliG hypothetical protein Bd0876 1 None None None 42522699 Common smc chromosome segregation SMC protein Bd1158 212 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42522883 Common ydeA sugar efflux transporter Bd1364 201 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42523178 Common neuC putative UDP-N-acetylglucosamine-2-epimerase NeuC Bd1680 107 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 42523345 Pathogen - hypothetical protein Bd1865 1 None None None 42523364 Common - hypothetical protein Bd1884 64 COG3865 COG3865, Uncharacterized protein conserved in bacteria Function unknown 42521986 Common - hypothetical protein Bd0372 56 COG3894 COG3894, Uncharacterized metal-binding protein General function prediction only 42521993 Common pgp phosphoglycolate phosphatase Bd0379 170 COG0546 Gph, Predicted phosphatases General function prediction only 42522490 Common - hypothetical protein Bd0921 74 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 42522945 Common - putative amino acid ABC transporter Bd1429 38 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42523852 Common - putative DNA-binding protein Bd2408 100 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 42525174 Common cafA ribonuclease G Bd3851 187 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 42525210 Common nuoK NADH-ubiquinone oxidoreductase chain 4L (chain K) Bd3889 159 COG0713 NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) Energy production and conversion 42524826 Common - hypothetical protein Bd3473 2 COG3042 Hlx, Putative hemolysin General function prediction only 42521770 Pathogen - hypothetical protein Bd0133 1 None None None 42524465 Pathogen - hypothetical protein Bd3073 1 None None None 42523172 Common - putative cyclic beta-1,2-glucan modification protein Bd1673 23 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 42522236 Pathogen - hypothetical protein Bd0647 1 None None None 42522510 Common - putative amidohydrolase Bd0943 197 COG0388 COG0388, Predicted amidohydrolase General function prediction only 42523076 Common - putative sensor protein fixL Bd1571 202 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 42522153 Common - hypothetical protein Bd0554 22 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 42524956 Common - Sensory transduction histidine kinase Bd3613 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42522714 Pathogen - hypothetical protein Bd1174 1 None None None 42523429 Common mpl hypothetical protein Bd1952 211 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 42523194 Common - UDP-N-acetyl-D-quinovosamine 4-epimerase Bd1697 140 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42523575 Pathogen - hypothetical protein Bd2105 1 None None None 42524045 Pathogen - hypothetical protein Bd2625 1 None None None 42522375 Common ankB ankyrin domain protein Bd0799 89 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 42521764 Common - TPR-domain containing protein Bd0126 4 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 42524442 Pathogen - hypothetical protein Bd3050 1 None None None 42522993 Pathogen - hypothetical protein Bd1482 1 None None None 42522474 Common ccpA hypothetical protein Bd0904 91 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 42523849 Common - hypothetical protein Bd2405 9 None None None 42523589 Common - hypothetical protein Bd2121 37 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 42524809 Common hemG hypothetical protein Bd3455 41 COG1232 HemY, Protoporphyrinogen oxidase Coenzyme metabolism 42525227 Pathogen - hypothetical protein Bd3907 1 None None None 42523942 Common - SEC-independent protein translocase protein TATC Bd2515 46 COG2346 COG2346, Truncated hemoglobins General function prediction only 42524797 Pathogen - hypothetical protein Bd3440 1 None None None 42521820 Common sufD Transport protein involved in the [Fe-S] cluster assembly. Bd0188 165 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 42523401 Common - putative polyketide cyclase Bd1923 8 COG2867 COG2867, Oligoketide cyclase/lipid transport protein Lipid metabolism 42521967 Common - hypothetical protein Bd0347 65 COG3176 COG3176, Putative hemolysin General function prediction only 42524999 Common - hypothetical protein Bd3659 118 COG1832 COG1832, Predicted CoA-binding protein General function prediction only 42523933 Common sugE molecular chaperone sugE Bd2506 105 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 42521830 Common - hemolysin Bd0200 131 COG1189 COG1189, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 42521902 Common - long-chain fatty-acid-CoA ligase Bd0279 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 42524155 Common - hypothetical protein Bd2740 9 None None None 42525189 Pathogen - hypothetical protein Bd3868 1 None None None 42523495 Common nrtA ABC-type transporter nitrate-binding protein Bd2020 84 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 42524877 Common - hypothetical protein Bd3525 230 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 42523570 Common - hypthetical protein Bd2100 102 None None None 42524682 Common aspS hypothetical protein Bd3311 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42522357 Common pdhD dihydrolipoamide dehydrogenase, E3 subunit Bd0778 246 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 42522221 Pathogen - hypothetical protein Bd0631 1 None None None 42523699 Common glt glutamate synthase Bd2241 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 42525099 Common - Membrane protein related to metalloendopeptidase Bd3771 188 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 42523883 Pathogen - hypothetical protein Bd2443 1 COG1842 PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription Transcription / Signal transduction mechanisms 42522099 Common rplM 50S ribosomal protein L13 Bd0492 216 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 42524270 Pathogen - hypothetical protein Bd2863 1 None None None 42522334 Pathogen - putative protease Bd0751 1 None None None 42521962 Common - ABC-type transporter, ATP-binding protein Bd0341 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 42524063 Pathogen - hypothetical protein Bd2643 1 None None None 42523626 Pathogen - hypothetical protein Bd2162 1 None None None 42524694 Common fliP flagellar biosynthesis protein FliP Bd3325 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 42523905 Common smf putative DNA processing protein (Smf family) Bd2472 209 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 42521715 Common prfA peptide chain release factor RF-1 Bd0069 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 42523563 Pathogen - hypothetical protein Bd2092 1 COG5373 COG5373, Predicted membrane protein Function unknown 42524185 Pathogen - hypothetical protein Bd2775 1 None None None 42524458 Pathogen - hypothetical protein Bd3066 1 None None None 42523108 Common - putative formiminoglutamase Bd1603 53 COG3741 HutG, N-formylglutamate amidohydrolase Amino acid transport and metabolism 42523365 Pathogen - hypothetical protein Bd1885 1 None None None 42524910 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase Bd3560 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 42525168 Common - hypothetical protein Bd3845 163 COG1576 COG1576, Uncharacterized conserved protein Function unknown 42524119 Common - putative HAM1 protein Bd2701 235 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 42524570 Common lpxH UDP-2,3-diacylglucosamine hydrolase Bd3188 99 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 42524727 Pathogen - hypothetical protein Bd3364 1 None None None 42525064 Common MglA hypothetical protein Bd3734 18 COG2229 COG2229, Predicted GTPase General function prediction only 42524329 Common - probable acyl-CoA dehydrogenase Bd2924 149 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 42524201 Common batD hypothetical protein Bd2791 13 None None None 42522794 Pathogen - hypothetical protein Bd1270 1 None None None 42524305 Common pepT peptidase T Bd2900 61 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 42525231 Common jag highly similar to B. subtilis Jag protein Bd3911 35 COG1847 Jag, Predicted RNA-binding protein General function prediction only 42524501 Pathogen - hypothetical protein Bd3114 1 None None None 42523635 Pathogen - putative Na+/H+ exchange protein Bd2172 3 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 42523749 Pathogen - hypothetical protein Bd2298 1 None None None 42524918 Common - ABC-type transporter, ATPase component Bd3569 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42523257 Common - hypothetical protein Bd1767 25 COG1434 COG1434, Uncharacterized conserved protein Function unknown 42522069 Common tetA multidrug resistance protein Bd0461 194 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42524527 Pathogen - hypothetical protein Bd3142 1 None None None 42523650 Common sohB predicted inner membrane peptidase Bd2188 180 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 42521720 Pathogen - hypothetical protein Bd0074 1 None None None 42522840 Pathogen - hypothetical protein Bd1319 1 None None None 42522315 Pathogen - hypothetical protein Bd0730 1 None None None 42524764 Common fliE hypothetical protein Bd3405 90 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 42522632 Common - peptidase, M16 family Bd1078 175 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 42524577 Common - Hxdroxypyruvate reductase Bd3195 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 42524745 Common - branched-chain amino acid ABC transporter, permease protein Bd3386 159 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 42523806 Common - hypothetical protein Bd2360 20 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 42523863 Pathogen - hypothetical protein Bd2422 1 None None None 42524512 Common - sensor histidine kinase Bd3126 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42522954 Pathogen - hypothetical protein Bd1438 1 None None None 42523890 Pathogen - hypothetical protein Bd2454 1 None None None 42523758 Pathogen - hypothetical protein Bd2307 1 None None None 42522446 Common - hypothetical protein Bd0875 2 None None None 42523587 Common trmD tRNA methyltransferase Bd2119 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 42523142 Common - transcriptional regulator Bd1640 90 COG0789 SoxR, Predicted transcriptional regulators Transcription 42524268 Common - putative O-methyltransferase Bd2861 5 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 42522404 Pathogen - hypothetical protein Bd0828 1 None None None 42524071 Common - ABC amino acid transporter, periplasmic protein Bd2651 23 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42524405 Common purF amidophosphoribosyltransferase Bd3009 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 42524129 Common - soluble lytic murein transglycosylase Bd2711 161 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 42524479 Common - hypothetical protein Bd3090 62 COG3220 COG3220, Uncharacterized protein conserved in bacteria Function unknown 42524614 Common gst glutathione S-transferase family protein Bd3237 83 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 42522193 Pathogen - hypothetical protein Bd0600 1 None None None 42524353 Common rpsD 30S ribosomal protein S4 Bd2951 222 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 42525115 Common - putative ATP-binding protein Bd3789 172 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 42766906 Common rpmG 50S ribosomal protein L33 Bd2410.1 58 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 42525132 Common - ABC-type organic solvent resistance transport system ATP-binding protein Bd3806 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 42524888 Common rfaD ADP-L-glycero-D-mannoheptose-6-epimerase Bd3536 210 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42522241 Common - MutT/nudix family protein Bd0654 97 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 42523666 Common sulA cell division inhibitor SULA Bd2205 129 COG1090 COG1090, Predicted nucleoside-diphosphate sugar epimerase General function prediction only 42524115 Pathogen - hypothetical protein Bd2697 3 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42523664 Common - putative nitrite reductase Bd2203 6 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 42524437 Pathogen - hypothetical protein Bd3044 1 None None None 42521940 Common - hypothetical protein Bd0318 2 None None None 42522972 Common - hypothetical protein Bd1459 11 None None None 42521876 Pathogen - hypothetical protein Bd0251 1 None None None 42521695 Common dapB hypothetical protein Bd0047 213 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 42523423 Pathogen - hypothetical protein Bd1946 1 None None None 42522434 Common pilD leader peptidase (prepilin peptidase) Bd0862 143 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 42524368 Common rplP 50S ribosomal protein L16 Bd2969 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 42521753 Common CpaB putative flp pilus assembly protein CpaB Bd0113 45 COG3745 CpaB, Flp pilus assembly protein CpaB Intracellular trafficking and secretion 42523027 Common - hypothetical protein Bd1520 2 COG2761 FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 42525222 Common atpF ATP synthase B chain Bd3902 28 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 42523044 Pathogen - hypothetical protein Bd1537 1 None None None 42523977 Pathogen - hypothetical protein Bd2553 1 None None None 42522915 Common rbpA putative RNA-binding protein Bd1397 66 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 42524519 Common - hypothetical protein Bd3133 3 None None None 42522220 Common - putative transporter Bd0630 65 COG2928 COG2928, Uncharacterized conserved protein Function unknown 42522046 Common - putative penicillin-binding protein Bd0436 61 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 42524450 Common nolG efflux transporter Bd3058 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 42521921 Common - putative stress-induced protein OsmC Bd0298 15 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 42522285 Common - predicted Zn-dependent protease Bd0699 49 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 42524870 Pathogen - hypothetical protein Bd3518 1 None None None 42525113 Common - hypothetical zinc metalloprotease Bd3787 215 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 42524979 Common yvqG hypothetical protein Bd3636 3 None None None 42524765 Common flgC flagellar basal-body rod protein Bd3406 125 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 42522271 Common - aminomethyltransferase Bd0684 179 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 42522230 Pathogen - hypothetical protein Bd0641 3 COG2348 COG2348, Uncharacterized protein involved in methicillin resistance Defense mechanisms 42522183 Common - putative acetyltransferase Bd0589 3 COG4552 Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases General function prediction only 42522061 Common - oxidoreductase Bd0452 55 COG3491 PcbC, Isopenicillin N synthase and related dioxygenases General function prediction only 42523227 Common - hypothetical protein Bd1731 95 COG1720 COG1720, Uncharacterized conserved protein Function unknown 42524389 Pathogen - preprotein translocase SecE subunit Bd2993 1 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 42525139 Common - hypothetical protein Bd3815 74 COG1926 COG1926, Predicted phosphoribosyltransferases General function prediction only 42522384 Common pyrG CTP synthetase Bd0808 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 42524606 Pathogen - hypothetical protein Bd3228 1 None None None 42525215 Pathogen - hypothetical protein Bd3894 1 None None None 42521787 Pathogen - hypothetical protein Bd0150 1 None None None 42522581 Common - putative fibronectin/fibrinogen-binding protein Bd1021 21 COG1293 COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP Transcription 42522546 Pathogen - hypothetical protein Bd0984 1 None None None 42522884 Common - methionine sulfoxide reductase B Bd1365 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 42523880 Pathogen - hypothetical protein Bd2440 1 None None None 42525090 Common - Adventurous gliding motility protein R Bd3762 97 COG0003 ArsA, Predicted ATPase involved in chromosome partitioning Cell division and chromosome partitioning 42522163 Common - putative periplamic protein Bd0566 74 COG2989 COG2989, Uncharacterized protein conserved in bacteria Function unknown 42522876 Pathogen - hypothetical protein Bd1357 1 None None None 42524107 Common - putative intracellular septation protein Bd2689 9 COG2917 COG2917, Intracellular septation protein A Cell division and chromosome partitioning 42523283 Pathogen - hypothetical protein Bd1795 1 None None None 42523724 Common kef putative potassium/proton antiporter Bd2267 208 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 42524195 Common cobB NAD-dependent deacetylase Bd2785 152 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 42523610 Common - two-component response regulator Bd2143 189 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42522508 Common rplX 50S ribosomal protein L24 Bd0941 41 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 42524944 Pathogen - hypothetical protein Bd3600 1 None None None 42524229 Pathogen - hypothetical protein Bd2819 1 None None None 42524924 Common mvaB hydroxymethylglutaryl-CoA lyase Bd3576 142 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 42525195 Common - hypothetical protein Bd3874 23 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 42524208 Common htpx protease heat shock protein Bd2798 161 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 42523186 Pathogen - hypothetical protein Bd1689 1 None None None 42522742 Common - hypothetical membrane spanning protein Bd1208 86 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 42522940 Common rluA putative pseudouridine synthase Bd1424 208 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 42524065 Common udk uridine kinase Bd2645 96 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 42521788 Common - hypothetical protein Bd0152 51 COG3876 COG3876, Uncharacterized protein conserved in bacteria Function unknown 42522491 Common htrA periplasmic serine protease Bd0922 221 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 42524861 Common ycjI putative carboxypeptidase Bd3508 18 COG3608 COG3608, Predicted deacylase General function prediction only 42521763 Common comL Competence protein ComL Bd0125 125 COG4105 ComL, DNA uptake lipoprotein General function prediction only 42523005 Common lpxB lipid A disaccharide synthase Bd1498 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 42523438 Common sufE Regulator of cysteine desulfurase activity Bd1961 104 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 42523842 Pathogen - hypothetical protein Bd2398 1 None None None 42522198 Common - putative transposase Bd0605 33 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 42523362 Pathogen - hypothetical protein Bd1882 1 None None None 42522849 Common bolA BolA-like protein Bd1328 92 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 42523794 Common - hypothetical protein Bd2348 8 None None None 42524906 Pathogen - hypothetical protein Bd3555 1 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42522400 Common glnP polar amino acid transport system permease protein Bd0824 171 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 42524079 Common hik probable sensor/response regulator hybrid Bd2661 222 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 42525037 Pathogen - hypothetical protein Bd3702 1 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42521669 Common - putative lipoprotein Bd0020 42 COG2121 COG2121, Uncharacterized protein conserved in bacteria Function unknown 42522863 Common - hypothetical protein Bd1343 15 None None None 42522734 Pathogen - hypothetical protein Bd1199 1 None None None 42523547 Common rbsB D-ribose periplasmic binding protein Bd2075 71 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 42524813 Common - D-alanyl-D-alanine carboxypeptidase Bd3459 13 COG2027 DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) Cell envelope biogenesis, outer membrane 42522016 Pathogen - hypothetical protein Bd0402 1 None None None 42524083 Common - putative cytoplasmic protein Bd2665 61 COG3214 COG3214, Uncharacterized protein conserved in bacteria Function unknown 42524037 Pathogen - transcription regulator Bd2617 1 None None None 42524159 Common - hypothetical protein Bd2744 3 None None None 42523868 Pathogen - hypothetical protein Bd2427 1 None None None 42524687 Common fliA RNA polymerase sigma factor for flagellar operon Bd3318 216 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 42523642 Common - putative Rhs family protein Bd2179 3 None None None 42524410 Common fliG hypothetical protein Bd3014 41 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 42524792 Pathogen - hypothetical protein Bd3435 1 None None None 42522524 Common tldD putative Zn-dependent protease Bd0958 167 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 42524088 Common - hypothetical protein Bd2670 7 None None None 42523706 Pathogen - hypothetical protein Bd2248 1 None None None 42524818 Common - putative transcriptional regulator Bd3465 89 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42522263 Pathogen - tolA protein Bd0676 1 None None None 42523827 Pathogen - hypothetical protein Bd2381 1 None None None 42524097 Pathogen - hypothetical protein Bd2679 1 None None None 42522005 Pathogen - hypothetical protein Bd0391 1 None None None 42523723 Common aldH aldehyde dehydrogenase Bd2266 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 42525048 Common - hypothetical protein Bd3715 72 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 42524236 Pathogen - hypothetical protein Bd2827 1 None None None 42521840 Common mreB rod shape-determining protein mreB Bd0211 200 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 42523525 Pathogen - hypothetical protein Bd2052 1 None None None 42521672 Common sdhC putative cytochrome B subunit Bd0024 31 None None None 42522832 Common - methyltransferase-related protein Bd1311 19 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 42524800 Pathogen - hypothetical protein Bd3443 1 None None None 42524893 Pathogen - hypothetical protein Bd3541 1 None None None 42522578 Common phoR Phosphate regulon sensor protein phoR Bd1018 222 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 42522347 Common doxD DoxD-like family protein Bd0765 5 COG2259 COG2259, Predicted membrane protein Function unknown 42524611 Common murB UDP-N-acetylpyruvoylglucosamine reductase Bd3233 200 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 42524547 Pathogen - hypothetical protein Bd3164 1 None None None 42522468 Common adhC alcohol dehydrogenase / formaldehyde dehydrogenase Bd0898 200 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 42523951 Pathogen - hypothetical protein Bd2525 1 None None None 42524160 Pathogen - hypothetical protein Bd2746 1 None None None 42522396 Pathogen - hypothetical protein Bd0820 2 None None None 42524178 Pathogen - hypothetical protein Bd2766 1 None None None 42524242 Common hik sensor histidine kinase Bd2833 213 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42523826 Pathogen - hypothetical protein Bd2380 1 None None None 42522619 Pathogen osc hypothetical protein Bd1064 1 None None None 42522415 Common rpoN RNA polymerase sigma-54 factor Bd0843 145 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 42522661 Common frpA Iron-regulated protein frpA Bd1113 7 None None None 42523235 Pathogen - hypothetical protein Bd1740 1 None None None 42523034 Common - hypothetical protein Bd1527 24 COG5622 COG5622, Protein required for attachment to host cells Cell motility and secretion 42522629 Common - Uncharacterized conserved Bd1075 33 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 42524034 Common - iron-sulfur cluster-binding protein Bd2614 100 COG0348 NapH, Polyferredoxin Energy production and conversion 42523447 Pathogen - hypothetical protein Bd1970 1 None None None 42523924 Common - bacterial surface antigen Bd2495 161 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 42524962 Common - hypothetical protein Bd3619 2 COG0431 COG0431, Predicted flavoprotein General function prediction only 42524287 Pathogen - hypothetical protein Bd2880 1 None None None 42524987 Common mtrF efflux pump component MtrF Bd3646 41 COG2978 AbgT, Putative p-aminobenzoyl-glutamate transporter Coenzyme metabolism 42523130 Common - hypothetical protein Bd1627 38 COG1257 HMG1, Hydroxymethylglutaryl-CoA reductase Lipid metabolism 42523273 Pathogen - hypothetical protein Bd1785 1 None None None 42522471 Common - Zn-dependent hydrolase Bd0901 112 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 42524972 Common - hypothetical protein Bd3629 118 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42522928 Pathogen - hypothetical protein Bd1411 1 None None None 42523582 Pathogen - hypothetical protein Bd2114 1 None None None 42523875 Common - hypothetical protein Bd2434 4 None None None 42523659 Common - alkane 1-monooxygenase Bd2197 26 COG3239 DesA, Fatty acid desaturase Lipid metabolism 42524508 Common - ABC-type organic solvent transport system ATP-binding protein Bd3121 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 42522391 Pathogen - hypothetical protein Bd0815 1 None None None 42523798 Pathogen - hypothetical protein Bd2352 1 None None None 42523430 Common - hypothetical protein Bd1953 35 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 42521956 Pathogen - hypothetical protein Bd0334 2 COG1816 Add, Adenosine deaminase Nucleotide transport and metabolism 42523264 Common dapD 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase Bd1775 137 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 42521987 Common trxB hypothetical protein Bd0373 249 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 42524183 Pathogen - hypothetical protein Bd2773 1 None None None 42522868 Common - putative amino acid ABC transporter Bd1349 23 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42522019 Common fabG 3-ketoacyl-acyl carrier protein reductase Bd0405 151 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 42524535 Common - hypothetical protein Bd3150 74 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 42522744 Common - hypothetical protein Bd1210 8 None None None 42522650 Common sun putative sun protein Bd1101 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 42522978 Pathogen - hypothetical protein Bd1465 1 None None None 42523462 Common - putative Fe-S oxidoreductase Bd1985 80 COG1242 COG1242, Predicted Fe-S oxidoreductase General function prediction only 42524078 Pathogen - hypothetical protein Bd2659 1 None None None 42523660 Common - hypothetical protein Bd2198 140 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 42524858 Pathogen - hypothetical protein Bd3505 1 None None None 42524941 Pathogen - hypothetical protein Bd3597 1 None None None 42524600 Pathogen - hypothetical protein Bd3221 1 None None None 42523276 Pathogen - hypothetical protein Bd1788 1 None None None 42523878 Common - transmembrane protein Bd2438 63 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 42523079 Common iucC putative siderophore biosynthesis protein IucC Bd1574 49 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 42524039 Common oxyR transcriptional regulator, LysR family Bd2619 191 COG0583 LysR, Transcriptional regulator Transcription 42525093 Pathogen - hypothetical protein Bd3765 1 None None None 42521824 Pathogen - hypothetical protein Bd0192 1 None None None 42523643 Pathogen - hypothetical protein Bd2180 1 None None None 42524922 Common - polar amino acid transport system substrate-binding protein Bd3573 9 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42523722 Common - glutamine amidotransferase Bd2265 78 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 42524304 Common hemG protoporphyrinogen oxidase Bd2899 35 COG4635 HemG, Flavodoxin Energy production and conversion / Coenzyme metabolism 42524770 Common - ABC transporter, permease protein Bd3411 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 42523953 Common - hypothetical protein Bd2527 2 COG2353 COG2353, Uncharacterized conserved protein Function unknown 42523338 Pathogen - hypothetical protein Bd1858 1 None None None 42521814 Common aglV Adventurous gliding motility protein V Bd0181 139 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 42525117 Common rluD Pseudouridylate synthase Bd3791 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 42522724 Common - hypothetical protein Bd1186 17 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 42524685 Pathogen - hypothetical protein Bd3315 1 None None None 42523669 Common resA cytochrome c biogenesis (thioredoxin) related protein Bd2208 151 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 42524409 Common - putative sigma factor regulation protein Bd3013 109 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 42524943 Common - hypothetical protein Bd3599 6 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 42524116 Pathogen - hypothetical protein Bd2698 1 None None None 42524472 Common nuoG NADH dehydrogenase I chain G Bd3081 182 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 42522456 Common - hypothetical protein Bd0885 10 None None None 42524057 Common phaz PHB depolymerase Bd2637 13 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 42522573 Pathogen - hypothetical protein Bd1013 1 None None None 42524309 Pathogen - hypothetical protein Bd2904 1 None None None 42524288 Common - hypothetical protein Bd2881 5 None None None 42524671 Pathogen - hypothetical protein Bd3299 1 None None None 42523052 Common - hypothetical protein Bd1545 150 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 42524805 Common - signal-transducing histidine kinase Bd3450 6 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42521907 Common - hypothetical protein Bd0284 29 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 42521918 Common sodC hypothetical protein Bd0295 86 COG2032 SodC, Cu/Zn superoxide dismutase Inorganic ion transport and metabolism 42522399 Common glnQ similar to amino acid ABC transporter, ATP-binding protein Bd0823 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 42523360 Pathogen - hypothetical protein Bd1880 1 None None None 42523181 Common - hexapeptide transferase family protein Bd1684 231 COG1043 LpxA, Acyl- acyl carrier protein 42525224 Common - hypothetical protein Bd3904 43 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 42522961 Pathogen - hypothetical protein Bd1447 1 None None None 42523213 Common - hypothetical protein Bd1717 11 COG2119 COG2119, Predicted membrane protein Function unknown 42524674 Common - predicted metal-dependent hydrolase Bd3303 87 COG1574 COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 42525045 Pathogen - hypothetical protein Bd3711 1 None None None 42522192 Common - hypothetical protein Bd0599 2 COG2821 MltA, Membrane-bound lytic murein transglycosylase Cell envelope biogenesis, outer membrane 42524827 Common - hypothetical protein Bd3474 2 None None None 42524894 Common ribD diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase Bd3542 227 COG1985 RibD, Pyrimidine reductase, riboflavin biosynthesis Coenzyme metabolism 42521978 Pathogen - hypothetical protein Bd0361 1 None None None 42524744 Common - branched-chain amino acid ABC transporter, amino acid-binding protein Bd3385 157 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 42522423 Common lepA GTP-binding protein LepA Bd0851 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 42522228 Common smpB SsrA-binding protein Bd0638 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 42525196 Common dksA hypothetical protein Bd3875 107 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 42523162 Pathogen - hypothetical protein Bd1662 1 None None None 42524794 Common mutY A/G-specific adenine glycosylase Bd3437 203 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 42524326 Common - putative glutamine amidotransferase Bd2921 135 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 42522879 Common - putative membrane associated lipoprotein Bd1360 16 None None None 42524782 Pathogen - hypothetical protein Bd3423 1 None None None 42523220 Common - Phytoene dehydrogenase Bd1724 110 COG1233 COG1233, Phytoene dehydrogenase and related proteins Secondary metabolites biosynthesis, transport, and catabolism 42523457 Common resA cytochrome c biogenesis (thioredoxin) Bd1980 82 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 42523781 Pathogen - hypothetical protein Bd2333 1 None None None 42522770 Pathogen - hypothetical protein Bd1240 1 None None None 42522463 Common - hypothetical protein Bd0893 3 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 42523454 Common - hypothetical protein Bd1977 147 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 42523856 Pathogen - hypothetical protein Bd2412 1 None None None 42524909 Pathogen - hypothetical protein Bd3558 1 None None None 42523960 Pathogen - hypothetical protein Bd2534 1 None None None 42524132 Common - ABC-type transporter, periplasmic component. Bd2714 16 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 42522184 Common fer putative ferredoxin Bd0590 12 COG1141 Fer, Ferredoxin Energy production and conversion 42524634 Pathogen - hypothetical protein Bd3259 1 None None None 42522493 Common - hypothetical protein Bd0925 7 COG1605 PheA, Chorismate mutase Amino acid transport and metabolism 42524234 Common nrfA nitrite reductase periplasmic cytochrome c552 Bd2825 40 COG3303 NrfA, Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit Inorganic ion transport and metabolism 42525218 Common atpB F0F1 ATP synthase subunit beta Bd3897 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 42524585 Common murF UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase Bd3204 209 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 42522095 Pathogen - hypothetical protein Bd0487 1 None None None 42524860 Common - putative secreted nuclease Bd3507 37 COG2356 EndA, Endonuclease I DNA replication, recombination, and repair 42522080 Common - hypothetical protein Bd0472 26 COG1716 COG1716, FOG: FHA domain Signal transduction mechanisms 42525164 Common - hypothetical protein Bd3841 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 42522007 Pathogen - hypothetical protein Bd0393 1 None None None 42521948 Common btuE putative vitamin B12 transport protein Bd0326 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 42525142 Common - hypothetical protein Bd3818 39 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 42521678 Common pcbD hydrolase, alpha/beta fold family Bd0030 139 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42523654 Common appB dipeptide transport system permease protein DppB Bd2192 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 42522837 Common - hypothetical protein Bd1316 87 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 42524061 Pathogen - putative serine/threonine protein phosphatase Bd2641 1 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 42524777 Common - hypothetical protein Bd3418 6 COG5512 COG5512, Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives General function prediction only 42521947 Common - probable arsenate reductase Bd0325 96 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 42522205 Pathogen - hypothetical protein Bd0613 1 None None None 42522291 Common - cell wall surface anchor family protein Bd0705 30 COG5301 COG5301, Phage-related tail fibre protein General function prediction only 42524881 Common - hypothetical protein Bd3529 11 COG3554 COG3554, Uncharacterized protein conserved in bacteria Function unknown 42522141 Common flgK FlgK, flagellar hook-associated protein Bd0540 124 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 42522165 Common - two-component response regulator Bd0569 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42524300 Common - acyltransferase family protein Bd2895 102 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 42524254 Pathogen - hypothetical protein Bd2846 1 None None None 42525035 Pathogen - hypothetical protein Bd3700 1 None None None 42523298 Common hutG formimidoylglutamase Bd1812 125 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 42522482 Pathogen - hypothetical protein Bd0912 1 None None None 42524455 Common nifA Transcriptional regulator Bd3063 174 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42525193 Common dnaJ DnaJ protein Bd3872 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 42523572 Common - hypothetical protein Bd2102 30 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 42524103 Pathogen - hypothetical protein Bd2685 1 None None None 42521776 Common nodJ ABC transporter, permease protein Bd0139 166 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 42522373 Common tcmJ Polyketide synthase curC Bd0797 19 COG3837 COG3837, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 42523727 Common - dolichyl-phosphate beta-glucosyltransferase Bd2270 211 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42524867 Common yhhW hypothetical protein Bd3515 148 COG1741 COG1741, Pirin-related protein General function prediction only 42523761 Common mviN virulence factor MviN homolog Bd2310 189 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 42523084 Pathogen - hypothetical protein Bd1579 1 None None None 42524515 Common - hypothetical protein Bd3129 2 None None None 42524964 Common - transcriptional regulator, LysR family Bd3621 170 COG0583 LysR, Transcriptional regulator Transcription 42522387 Common araC transcriptional regulator, AraC family Bd0811 25 COG3708 COG3708, Uncharacterized protein conserved in bacteria Function unknown 42523082 Common - multidrug resistance protein Bd1577 14 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 42524100 Pathogen - hypothetical protein Bd2682 1 None None None 42521780 Common - predicted phosphatase Bd0143 39 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 42524789 Common cheY chemotaxis protein Bd3431 205 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 42522437 Pathogen pilO hypothetical protein Bd0865 1 COG3167 PilO, Tfp pilus assembly protein PilO Cell motility and secretion / Intracellular trafficking and secretion 42523254 Common - hypothetical protein Bd1763 46 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 42524136 Common - hypothetical protein Bd2719 74 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 42522631 Common - Protease Bd1077 194 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 42524913 Common yacB pantothenate kinase Bd3564 131 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 42523408 Common - hypothetical protein Bd1930 3 None None None 42522971 Pathogen - hypothetical protein Bd1458 1 None None None 42524760 Common fliI flagellum-specific ATP synthase Bd3401 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 42521844 Pathogen - hypothetical protein Bd0217 1 None None None 42524354 Common rpsK 30S ribosomal protein S11 Bd2952 247 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 42523287 Common - hypothetical protein Bd1799 110 COG0397 COG0397, Uncharacterized conserved protein Function unknown 42522403 Common - hypothetical protein Bd0827 108 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 42523009 Common - putative cAMP-dependent protein kinase Bd1502 6 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42525230 Common trmE tRNA modification GTPase TrmE Bd3910 229 COG0486 ThdF, Predicted GTPase General function prediction only 42522700 Pathogen - hypothetical protein Bd1159 1 None None None 42524758 Common - hypothetical protein Bd3399 22 COG3334 COG3334, Uncharacterized conserved protein Function unknown 42523925 Pathogen - hypothetical protein Bd2496 1 None None None 42522309 Pathogen - hypothetical protein Bd0724 1 None None None 42524961 Pathogen - hypothetical protein Bd3618 1 None None None 42523622 Common - 2-nitropropane dioxygenase Bd2156 120 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 42522323 Common - hypothetical protein Bd0739 10 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42523791 Common - hypothetical protein Bd2345 165 COG0661 AarF, Predicted unusual protein kinase General function prediction only 42523616 Common - hypothetical protein Bd2150 112 COG0628 PerM, Predicted permease General function prediction only 42524112 Common bacA bacitracin resistance protein Bd2694 200 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 42524725 Common mxcB iron utilization protein Bd3361 62 COG2375 ViuB, Siderophore-interacting protein Inorganic ion transport and metabolism 42522791 Common - hypothetical protein Bd1267 9 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 42523703 Common rbn RNase BN Bd2245 68 COG1295 Rbn, Predicted membrane protein Function unknown 42523363 Pathogen - hypothetical protein Bd1883 1 None None None 42523143 Common - hypothetical protein Bd1641 53 None None None 42524335 Pathogen - hypothetical protein Bd2930 1 None None None 42522379 Pathogen - hypothetical protein Bd0803 1 None None None 42524707 Common pcrA ATP-dependent DNA helicase Bd3339 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 42524447 Common - hypothetical protein Bd3055 24 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 42522355 Pathogen dnl1 hypothetical protein Bd0776 1 None None None 42524871 Common dksA dnaK deletion suppressor protein Bd3519 91 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 42524698 Common fliL flagellar protein FliL Bd3329 41 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 42523483 Common glyA serine hydroxymethyltransferase Bd2007 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 42522986 Pathogen - hypothetical protein Bd1475 1 None None None 42525229 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Bd3909 193 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 42523619 Common - putative universal stress protein Bd2153 31 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 42521888 Common - hypothetical protein Bd0264 79 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 42524616 Pathogen - hypothetical protein Bd3239 1 None None None 42521854 Common prkA serine protein kinase Bd0228 71 COG2766 PrkA, Putative Ser protein kinase Signal transduction mechanisms 42524563 Pathogen - hypothetical protein Bd3180 1 None None None 42524128 Common oppB oligopeptide ABC transporter, permease protein Bd2710 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 42523428 Common - D-alanyl-D-alanine carboxypeptidease, putative Bd1951 65 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 42521723 Common serS seryl-tRNA synthetase Bd0077 243 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 42522889 Common - RNA helicase Bd1370 233 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 42523135 Common - 23S rRNA methyltransferase Bd1632 141 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 42523871 Pathogen - hypothetical protein Bd2430 1 None None None 42523305 Common yjeS iron-sulfur cluster-binding protein Bd1819 135 COG1600 COG1600, Uncharacterized Fe-S protein Energy production and conversion 42524191 Pathogen - hypothetical protein Bd2781 1 None None None 42521903 Common fabH 3-oxoacyl-(acyl-carrier-protein) synthase III Bd0280 203 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 42521811 Common glnE glutamate-ammonia-ligase adenylyltransferase Bd0178 119 COG1391 GlnE, Glutamine synthetase adenylyltransferase Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms 42522066 Common valS hypothetical protein Bd0458 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42523685 Pathogen - hypothetical protein Bd2227 1 None None None 42523743 Common - putative SAM-dependent methyltransferase Bd2290 6 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 42524992 Common - hypothetical protein Bd3651 5 None None None 42522473 Common lysR transcriptional regulator, LysR family Bd0903 59 COG0583 LysR, Transcriptional regulator Transcription 42523865 Pathogen - hypothetical protein Bd2424 1 None None None 42523945 Common ahpF alkyl hydroperoxide reductase, subunit F Bd2518 248 COG3634 AhpF, Alkyl hydroperoxide reductase, large subunit Posttranslational modification, protein turnover, chaperones 42524978 Common - hypothetical protein Bd3635 3 None None None 42525186 Common tatC sec-independent protein translocase protein Bd3865 205 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 42524070 Common - hypothetical protein Bd2650 9 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 42524273 Common - putative fibronectin type III domain protein Bd2866 61 COG5301 COG5301, Phage-related tail fibre protein General function prediction only 42523049 Pathogen - hypothetical protein Bd1542 1 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 42524574 Common mcp chemotaxis protein Bd3192 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42523317 Common chrA chromate transport protein Bd1832 116 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 42523840 Common rimL ribosomal-protein-serine acetyltransferase Bd2395 32 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 42524504 Common - HD-hydrolase domain containing protein Bd3117 47 COG3481 COG3481, Predicted HD-superfamily hydrolase General function prediction only 42523171 Common - putative N-acetylglucosaminyltransferase Bd1672 4 None None None 42521684 Pathogen - hypothetical protein Bd0036 1 None None None 42524487 Common - ABC-type multidrug transporter, ATPase and permease protein Bd3098 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42521761 Common hprT hypothetical protein Bd0122 154 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 42522739 Pathogen - hypothetical protein Bd1205 1 None None None 42523398 Common - hypothetical protein Bd1920 10 None None None 42524598 Common hpt hypoxanthine-guanine phosphoribosyltransferase homologue Bd3219 149 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 42524767 Common flbD Transcriptional regulatory protein flbD Bd3408 163 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42521968 Common - Acyltransferase Bd0348 129 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 42522416 Common - ABC-type transporter, periplasmic domain Bd0844 49 None None None 44896511 Common - hypothetical protein Bd1752.1 6 None None None 42522634 Common lysR transcriptional regulator (LysR family) Bd1080 133 COG0583 LysR, Transcriptional regulator Transcription 42524851 Common - hypothetical protein Bd3498 4 None None None 42521693 Common dapF hypothetical protein Bd0045 202 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 42523490 Common rpl32 50S ribosomal protein L32 Bd2015 61 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 42523818 Common - hypothetical abductin-like protein Bd2372 4 None None None 42523596 Common yadG putative ATP-binding component of a transport system Bd2129 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42525019 Common yxbC hypothetical protein Bd3682 11 COG2850 COG2850, Uncharacterized conserved protein Function unknown 42522604 Common - hypothetical protein Bd1047 15 COG3134 COG3134, Predicted outer membrane lipoprotein Function unknown 42524900 Pathogen - hypothetical protein Bd3548 1 COG1262 COG1262, Uncharacterized conserved protein Function unknown 42524175 Common birA biotin--synthetase Bd2763 98 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 42522787 Common - hypothetical protein Bd1262 44 COG1478 COG1478, Uncharacterized conserved protein Function unknown 42522585 Common - hypothetical protein Bd1026 3 None None None 42523099 Pathogen - hypothetical protein Bd1594 1 None None None 42522905 Common - Cys/Met metabolism lyase (PLP-dependent) Bd1386 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 42524196 Pathogen - hypothetical protein Bd2786 1 COG2944 COG2944, Predicted transcriptional regulator Transcription 42521751 Common TadA Flp pilus assembly protein TadA Bd0111 177 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 42523026 Common - Pseudouridine synthase Rlu family protein Bd1519 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 42523988 Common - phage related tail fibre protein Bd2565 63 COG5301 COG5301, Phage-related tail fibre protein General function prediction only 42521728 Pathogen - hypothetical protein Bd0083 1 COG3042 Hlx, Putative hemolysin General function prediction only 42522132 Common mltD Murein transglycosylase D Bd0529 113 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 42524261 Common - putative cytoplasmic protein Bd2854 121 COG1690 RtcB, Uncharacterized conserved protein Function unknown 42523394 Pathogen - hypothetical protein Bd1916 1 None None None 42522352 Common - hypothetical protein Bd0772 9 COG3204 COG3204, Uncharacterized protein conserved in bacteria Function unknown 42522665 Pathogen - hypothetical protein Bd1117 1 None None None 42524652 Common - hypothetical protein Bd3280 2 None None None 42523674 Common - cation-efflux system membrane protein Bd2215 211 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 42524691 Common flhB flagella-associated protein Bd3322 130 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 42522815 Common - hypothetical protein Bd1292 62 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 42523510 Common - predicted exonuclease of the beta-lactamase family Bd2036 127 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 42523361 Pathogen - hypothetical protein Bd1881 1 None None None 42523383 Pathogen - hypothetical protein Bd1904 1 None None None 42524164 Common ssuA putative solute-binding periplasmic protein of ABC transport Bd2750 9 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 42524625 Common hflX GTPase Bd3249 212 COG2262 HflX, GTPases General function prediction only 42522520 Common - hypothetical protein Bd0954 169 COG2183 Tex, Transcriptional accessory protein Transcription 42522218 Pathogen - hypothetical protein Bd0628 1 None None None 42522692 Common ppdK pyruvate phosphate dikinase Bd1150 233 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 42522922 Pathogen - hypothetical protein Bd1404 1 None None None 42522512 Common etf-QO electron transfer flavoprotein-ubiquinone oxidoreductase Bd0945 115 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 42521704 Common lig DNA ligase Bd0057 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 42522530 Common - hypothetical protein Bd0965 2 None None None 42522738 Common - Protein-tyrosine phosphatase 2 Bd1204 7 COG2453 CDC14, Predicted protein-tyrosine phosphatase Signal transduction mechanisms 42522480 Common catD putative hydrolase Bd0910 118 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42523344 Common - 6-pyruvoyl-tetrahydropterin synthase, putative Bd1864 14 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 42523732 Pathogen - spb1 gene forserine protease (AJ428902) related protein Bd2275 1 None None None 42523119 Pathogen - hypothetical protein Bd1615 1 None None None 42522499 Common merR transcriptional regulator, MerR family Bd0931 45 COG5012 COG5012, Predicted cobalamin binding protein General function prediction only 42523248 Common kdpA potassium-transporting ATPase, A subunit Bd1755 93 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 42522788 Common leuB 3-isopropylmalate dehydrogenase Bd1264 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 42524425 Common - hypothetical protein Bd3030 3 None None None 42524645 Common - hypothetical protein Bd3271 184 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 42521875 Pathogen - hypothetical protein Bd0250 1 None None None 42522805 Pathogen - hypothetical protein Bd1281 1 None None None 42522269 Pathogen - putative yir2 protein Bd0682 1 None None None 42524986 Common ybaZ putative methylated-DNA methyltransferase Bd3645 68 COG3695 COG3695, Predicted methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 42522144 Common - hypothetical protein Bd0544 3 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42523764 Common - Penicillin G acylase precursor Bd2313 75 COG2366 COG2366, Protein related to penicillin acylase General function prediction only 42524757 Common - probable flagellar hook-length control protein Bd3398 4 COG3144 FliK, Flagellar hook-length control protein Cell motility and secretion 42523078 Common - L-lysine 6-monooxygenase Bd1573 52 COG3486 IucD, Lysine/ornithine N-monooxygenase Secondary metabolites biosynthesis, transport, and catabolism 42522955 Pathogen - hypothetical protein Bd1439 1 None None None 42524541 Common - putative transferase Bd3156 9 COG5379 BtaA, S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase Lipid metabolism 42522857 Common - hypothetical protein Bd1337 16 COG5531 COG5531, SWIB-domain-containing proteins implicated in chromatin remodeling Chromatin structure and dynamics 42523551 Pathogen - hypothetical protein Bd2079 1 None None None 42523554 Common - bacterial transferase family protein Bd2082 209 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 42524783 Common glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing) Bd3424 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 42524225 Common - hypothetical protein Bd2815 44 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 42523174 Common - putative phosphoglycerol transferase Bd1676 32 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 42523478 Common yneE hypothetical transmembrane ptotein yneE Bd2002 56 COG3781 COG3781, Predicted membrane protein Function unknown 42521799 Common ydiY hypothetical protein Bd0163 22 COG3137 COG3137, Putative salt-induced outer membrane protein Cell envelope biogenesis, outer membrane 42521806 Pathogen - hypothetical protein Bd0172 1 None None None 42524018 Common - MCP, methyl-accepting chemotaxis protein Bd2596 139 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42525024 Common - hypothetical protein Bd3687 49 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 42523777 Common - protease Bd2328 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 42523155 Common - probable transmembrane protein Bd1654 19 None None None 42522420 Common PSrp-1 Ribosome-associated protein Y Bd0848 16 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 42523819 Pathogen - hypothetical protein Bd2373 1 None None None 42522337 Pathogen - putative protease Bd0754 1 None None None 42523070 Common mutL DNA mismatch repair protein MutL Bd1564 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 42524838 Common menF menaquinone-specific isochorismate synthase Bd3485 177 COG1169 MenF, Isochorismate synthase Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism 42524605 Common - putative Pirin-related protein Bd3227 146 COG1741 COG1741, Pirin-related protein General function prediction only 42522450 Common pcp pyrrolidone-carboxylate peptidase Bd0879 57 COG2039 Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) Posttranslational modification, protein turnover, chaperones 42522731 Pathogen - hypothetical protein Bd1195 1 None None None 42523581 Common ostA organic solvent tolerance protein Bd2113 122 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 42524411 Pathogen - hypothetical protein Bd3016 1 None None None 42524820 Common cheB protein-glutamate methylesterase Bd3467 197 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 42522995 Common - Tetrapyrrole methylase family protein/MazG family protein Bd1485 156 COG3956 COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain General function prediction only 42524145 Common kgd alpha-ketoglutarate decarboxylase Bd2728 147 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 42525023 Common - hypothetical protein Bd3686 59 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 42524963 Common - hypothetical protein Bd3620 14 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 42524467 Common lysR transcriptional regulator, LysR family Bd3075 182 COG0583 LysR, Transcriptional regulator Transcription 42522880 Pathogen - hypothetical protein Bd1361 1 None None None 42523069 Pathogen - hypothetical protein Bd1563 1 None None None 42523943 Common oxyR Redox-sensitive transcriptional activator Bd2516 191 COG0583 LysR, Transcriptional regulator Transcription 42522253 Common - hypothetical protein Bd0666 21 COG0824 FcbC, Predicted thioesterase General function prediction only 42522206 Common - putative O-linked GlcNAc transferase Bd0614 113 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 42523187 Common wbpG LPS biosynthesis protein WbpG Bd1690 25 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 42524200 Pathogen - hypothetical protein Bd2790 1 None None None 42524210 Common algY serine protease MucD precursor Bd2800 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 42525036 Pathogen - hypothetical protein Bd3701 1 None None None 42524560 Common mcp putative methyl-accepting chemotaxis protein Bd3177 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42521686 Common dnaB hypothetical protein Bd0038 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 42521959 Common - nucleotide-binding protein Bd0338 107 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 42525006 Common - hypothetical protein Bd3667 55 COG3832 COG3832, Uncharacterized conserved protein Function unknown 42523853 Common cheY chemotaxis resonse regulator CheY Bd2409 220 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 42524215 Pathogen - hypothetical protein Bd2805 1 None None None 42521831 Common - alpha-beta hydrolase superfamily protein Bd0201 67 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 42522873 Pathogen - hypothetical protein Bd1354 1 None None None 42523310 Common cheY chemotaxis protein CheY Bd1825 222 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42522301 Common pyrD dihydroorotate dehydrogenase 2 Bd0715 202 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 42522177 Pathogen - hypothetical protein Bd0582 1 None None None 42524336 Pathogen - hypothetical protein Bd2931 1 None None None 42522234 Pathogen - hypothetical protein Bd0645 1 None None None 42525151 Common ndk hypothetical protein Bd3827 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 42523311 Common - putative transcriptional regulator, LuxR family Bd1826 147 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 42521990 Common - putative extracellular serine protease Bd0376 60 COG4935 COG4935, Regulatory P domain of the subtilisin-like proprotein convertases and other proteases Posttranslational modification, protein turnover, chaperones 42522149 Pathogen - hypothetical protein Bd0550 1 None None None 42524448 Common - cyclic AMP receptor protein,catabolite gene activator Bd3056 92 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42522489 Pathogen - hypothetical protein Bd0920 1 None None None 42522969 Common - hypothetical protein Bd1456 104 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 42523192 Common capG capsular polysaccharide synthesis enzyme Cap5G Bd1695 156 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 42522828 Common acs acetyl coenzyme A synthetase Bd1306 212 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 42524135 Common glpK hypothetical protein Bd2718 178 COG0554 GlpK, Glycerol kinase Energy production and conversion 42525084 Pathogen - hypothetical protein Bd3756 1 None None None 42524004 Common - cell wall surface anchor family protein Bd2582 25 None None None 42523407 Common - hypothetical protein Bd1929 67 COG1624 COG1624, Uncharacterized conserved protein Function unknown 42521696 Pathogen - hypothetical protein Bd0048 1 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 42524555 Common ppnK probable inorganic polyphosphate/ATP-NAD kinase Bd3172 239 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 42523608 Common - two-component hybrid sensor and regulator Bd2141 79 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 42522034 Common aglR putative adventurous gliding motility protein R Bd0420 70 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 42524843 Common - Two-component system response regulator Bd3490 67 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42523801 Common - Hydrolase, TatD family Bd2355 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 42524812 Common - hypothetical protein Bd3458 59 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 42525126 Pathogen - hypothetical protein Bd3800 1 None None None 42523507 Pathogen - hypothetical protein Bd2033 1 COG3177 COG3177, Uncharacterized conserved protein Function unknown 42523870 Pathogen - hypothetical protein Bd2429 1 None None None 42522542 Common cutA divalent cation tolerance protein Bd0980 113 COG1324 CutA, Uncharacterized protein involved in tolerance to divalent cations Inorganic ion transport and metabolism 42524282 Common - putative hemagglutinin/hemolysin-related protein Bd2875 48 None None None 42523243 Pathogen - hypothetical protein Bd1750 1 None None None 42523914 Common lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase Bd2484 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 42522207 Pathogen - hypothetical protein Bd0615 1 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 42523995 Pathogen tatA twin-arginine-dependent translocase protein Bd2572 1 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 42525131 Common - ABC-type organic solvent resistance transporter, permease protein. Bd3805 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 42522643 Pathogen - hypothetical protein Bd1091 1 None None None 42522848 Pathogen - hypothetical protein Bd1327 1 None None None 42523060 Common dut deoxyuridine 5'-triphosphate nucleotidohydrolase Bd1553 179 COG0756 Dut, dUTPase Nucleotide transport and metabolism 42522100 Common rpsI 30S ribosomal subunit protein S9 Bd0493 247 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 42523112 Common hmoA molybdopterin oxidoreductase, iron-sulfur binding subunit Bd1608 148 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 42522645 Pathogen - possible GTP cyclohydrolase II Bd1094 1 None None None 42523291 Pathogen - hypothetical protein Bd1804 1 None None None 42524546 Common - putative kinase Bd3162 30 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 42525163 Common - probable O-linked GlcNAc transferase Bd3840 41 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 42523526 Common - component of the Tol biopolymer transport system Bd2053 131 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 42524524 Common - probable exonuclease RexA Bd3139 227 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 42523015 Pathogen aroE hypothetical protein Bd1508 1 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 42522264 Common - protein with DnaJ domain Bd0677 173 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 42525098 Pathogen - hypothetical protein Bd3770 1 None None None 42523712 Common - 2-dehydro-3-deoxyphosphooctonate aldolase Bd2255 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 42525104 Common - hypothetical protein Bd3776 7 None None None 42522367 Pathogen - hypothetical protein Bd0790 1 None None None 42522025 Pathogen - hypothetical protein Bd0411 1 None None None 42521819 Common sufC Iron-regulated ABC transporter ATPase subunit SufC Bd0187 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 42524711 Common kamA lysine 2,3-aminomutase Bd3344 127 COG1509 KamA, Lysine 2,3-aminomutase Amino acid transport and metabolism 42524649 Pathogen - hypothetical protein Bd3276 1 None None None 42523757 Pathogen - hypothetical protein Bd2306 1 None None None 42524889 Common phhA phenylalanine 4-monooxygenase Bd3537 45 COG3186 COG3186, Phenylalanine-4-hydroxylase Amino acid transport and metabolism 42523212 Pathogen - hypothetical protein Bd1716 1 None None None 42522914 Pathogen - hypothetical protein Bd1396 1 None None None 42523453 Common - hypothetical protein Bd1976 146 COG1354 COG1354, Uncharacterized conserved protein Function unknown 42523934 Common lplA hypothetical protein Bd2507 65 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 42524344 Common manC putative mannose-6-phosphate isomerase Bd2941 166 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 42523357 Common - ABC transporter multidrug ATP-binding protein Bd1877 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42521934 Common benE benzoate membrane transport protein Bd0311 61 COG3135 BenE, Uncharacterized protein involved in benzoate metabolism Secondary metabolites biosynthesis, transport, and catabolism 42523299 Pathogen - hypothetical protein Bd1813 1 None None None 42524728 Common lspA hypothetical protein Bd3365 169 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 42525209 Common nuoL NADH dehydrogenase I chain L Bd3888 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 42523126 Common - putative RTX family exoprotein Bd1623 120 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 42523998 Common - putative 2-component transcriptional regulator Bd2575 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42525076 Pathogen - hypothetical protein Bd3748 1 None None None 42522750 Pathogen - hypothetical protein Bd1218 1 None None None 42523353 Common - putative methyl accepting chemotaxis protein Bd1873 72 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42524351 Common rplQ 50S ribosomal protein L17 Bd2949 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 42522932 Common - putative Lysophospholipase Bd1415 12 COG2267 PldB, Lysophospholipase Lipid metabolism 42524394 Pathogen - hypothetical protein Bd2998 1 None None None 42522757 Common malG ABC-type Maltose/ Maltodextrin permease Bd1226 191 COG3833 MalG, ABC-type maltose transport systems, permease component Carbohydrate transport and metabolism 42522074 Common - hypothetical protein Bd0466 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 42522567 Common lysR transcriptional regulator Bd1006 186 COG0583 LysR, Transcriptional regulator Transcription 42522286 Common - predicted Zn-dependent protease Bd0700 166 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 42521793 Common - putative mechano-sensitive ion channel Bd0157 157 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 42521653 Common - DNA repair and genetic recombination protein Bd0003 169 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 42524010 Common - putative secreted protein Bd2588 24 None None None 42522607 Common tpiA hypothetical protein Bd1051 215 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 42521860 Common rhlE ATP-dependent RNA helicase Bd0235 232 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 42523435 Pathogen - hypothetical protein Bd1958 1 None None None 42523832 Common - hypothetical protein Bd2386 6 None None None 42522723 Pathogen - hypothetical protein Bd1185 1 None None None 42523569 Common pykA hypothetical protein Bd2099 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 42522492 Common - putative collagenase Bd0923 140 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 42521752 Common PilQ putative pilus assembly transmembrane protein Bd0112 65 COG4964 CpaC, Flp pilus assembly protein, secretin CpaC Intracellular trafficking and secretion 42524948 Pathogen - hypothetical protein Bd3604 1 None None None 42523489 Common fabH 3-oxoacyl-(acyl-carrier-protein) synthase III Bd2014 224 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 42524462 Pathogen - hypothetical protein Bd3070 1 None None None 42522537 Common - hypothetical protein Bd0975 3 None None None 42524831 Common ggt hypothetical protein Bd3478 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 42522087 Common - hypothetical protein Bd0479 2 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 42522553 Common cwlJ probable cell wall hydrolase Bd0992 41 COG3773 SleB, Cell wall hydrolyses involved in spore germination Cell envelope biogenesis, outer membrane 42521969 Common dinP DNA polymerase IV Bd0349 182 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 42522666 Common - hypothetical protein Bd1118 4 None None None 42522685 Common - hypothetical protein Bd1141 3 None None None 42523985 Common - hypothetical protein Bd2562 22 COG5276 COG5276, Uncharacterized conserved protein Function unknown 42522277 Common - hypothetical protein Bd0691 57 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 42522598 Common holB DNA polymerase III delta' subunit Bd1041 232 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 42522807 Common - Serine protease/subtilase Bd1283 122 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42521777 Common - putative Purine nucleoside phosphorylase Bd0140 63 COG1683 COG1683, Uncharacterized conserved protein Function unknown 42522128 Pathogen - hypothetical protein Bd0524 1 None None None 42524925 Common - probable acyl-CoA carboxylase alpha chain protein Bd3577 13 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 42523896 Common rodA rod shape-determining protein Bd2461 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 42522939 Common ftsJ cell division protein FtsJ Bd1423 138 COG0293 FtsJ, 23S rRNA methylase Translation, ribosomal structure and biogenesis 42522989 Common agmU adventurous gliding motility protein U Bd1478 8 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 42525147 Common - hypothetical protein Bd3823 8 None None None 42521717 Common murA UDP-N-acetylglucosamine enolpyruvyl transferase Bd0071 210 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 42524209 Common - hypothetical protein Bd2799 13 None None None 42523839 Pathogen - hypothetical protein Bd2393 1 None None None 42523648 Pathogen - hypothetical protein Bd2186 1 None None None 42521703 Common - hypothetical protein Bd0056 8 None None None 42522777 Common putA 1-pyrroline-5 carboxylate dehydrogenase Bd1251 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 42523425 Pathogen - hypothetical protein Bd1948 1 None None None 42522671 Common - putative membrane-bound mannosyltransferase Bd1123 4 COG4745 COG4745, Predicted membrane-bound mannosyltransferase Posttranslational modification, protein turnover, chaperones 42523107 Common - Cobalamin adenosyltransferase Bd1602 130 COG2096 COG2096, Uncharacterized conserved protein Function unknown 42522614 Common hyuB N-methylhydantoinase B Bd1059 78 COG0146 HyuB, N-methylhydantoinase B/acetone carboxylase, alpha subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 42522137 Common flgI flagellar basal body P-ring protein Bd0535 105 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 42524052 Common - hypothetical protein Bd2632 55 COG2272 PnbA, Carboxylesterase type B Lipid metabolism 42523223 Common yvfS ABC transporter, permease protein, putative Bd1727 34 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 42523726 Common - serine protease, subtilase family Bd2269 134 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42766908 Common - ribosomal protein L34 Bd3913.1 194 COG0230 RpmH, Ribosomal protein L34 Translation, ribosomal structure and biogenesis 42524866 Pathogen - hypothetical protein Bd3513 1 None None None 42522006 Pathogen - hypothetical protein Bd0392 1 COG2242 CobL, Precorrin-6B methylase 2 Coenzyme metabolism 42524730 Common - Conserved sensor histidine kinase Bd3367 209 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 42523051 Common - putative peptide N-acetyltransferase Bd1544 98 COG0456 RimI, Acetyltransferases General function prediction only 42523448 Common - hypothetical protein Bd1971 169 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 42524220 Common yqaB putative phosphatase Bd2810 183 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 42525141 Common - ABC-type antimicrobial peptide transporter, permease protein. Bd3817 39 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 42524599 Pathogen - hypothetical protein Bd3220 1 None None None 42524325 Pathogen - hypothetical protein Bd2920 1 None None None 42525217 Common atpC ATP synthase epsilon subunit Bd3896 158 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 42522094 Pathogen - hypothetical protein Bd0486 1 None None None 42525172 Common rplU 50S ribosomal protein L21 Bd3849 197 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 42521702 Pathogen - hypothetical protein Bd0055 1 None None None 42521973 Common - putative arsenate reductase Bd0355 46 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 42524104 Pathogen - hypothetical protein Bd2686 1 COG1413 COG1413, FOG: HEAT repeat Energy production and conversion 42524420 Pathogen - hypothetical protein Bd3025 1 None None None 42524872 Pathogen - hypothetical protein Bd3520 1 None None None 42524819 Common - Prolyl oligopeptidase family protein Bd3466 117 COG1505 COG1505, Serine proteases of the peptidase family S9A Amino acid transport and metabolism 42522494 Common - putative methyltransferase Bd0926 137 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 42522462 Pathogen - hypothetical protein Bd0892 1 None None None 42524378 Common rpsG 30S ribosomal protein S7 Bd2980 240 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 42523068 Pathogen - hypothetical protein Bd1562 1 None None None 42524133 Pathogen - hypothetical protein Bd2715 1 None None None 42522820 Pathogen - hypothetical protein Bd1297 1 None None None 42524084 Pathogen - hypothetical protein Bd2666 1 None None None 42522353 Pathogen - hypothetical protein Bd0773 1 None None None 42523632 Pathogen - hypothetical protein Bd2168 1 None None None 42523466 Pathogen - hypothetical protein Bd1989 1 None None None 42524584 Common - hypothetical protein Bd3203 90 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 42525127 Pathogen - hypothetical protein Bd3801 1 None None None 42524199 Pathogen - hypothetical protein Bd2789 1 None None None 42522011 Common - protein phosphatase Bd0397 137 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 42522633 Pathogen - hypothetical protein Bd1079 1 None None None 42524720 Common - putative TolB protein Bd3356 4 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 42524456 Common xerD site-specific recombinase Bd3064 229 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 42524101 Pathogen - hypothetical protein Bd2683 1 None None None 42524434 Pathogen - hypothetical protein Bd3040 1 None None None 42522779 Pathogen - probable phosphoglycerate mutase Bd1254 2 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 42521817 Common - hypothetical protein Bd0184 91 COG1959 COG1959, Predicted transcriptional regulator Transcription 42521794 Common ygaD ABC transporter, nucleotide binding/ATPase protein Bd0158 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42523188 Common hisH imidazole glycerol phosphate synthase subunit HisH Bd1691 215 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 42522386 Common - hypothetical protein Bd0810 2 COG3350 COG3350, Uncharacterized conserved protein Function unknown 42522125 Common apr Serine protease Bd0521 59 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42523255 Pathogen - putative Organic solvent tolerance protein Bd1765 1 None None None 42522170 Common - hypothetical protein Bd0574 5 None None None 42524908 Pathogen - hypothetical protein Bd3557 1 None None None 42523148 Pathogen - hypothetical protein Bd1646 1 None None None 42522550 Common sndH L-sorbosone dehydrogenase Bd0989 81 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 42523006 Common lpxK tetraacyldisaccharide 4'-kinase Bd1499 130 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 42523071 Common miaA hypothetical protein Bd1565 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 42523427 Common mccF microcin C7 self-immunity protein Bd1950 76 COG1619 LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF Defense mechanisms 42522869 Common - hypothetical protein Bd1350 4 COG3703 ChaC, Uncharacterized protein involved in cation transport Inorganic ion transport and metabolism 42523025 Common - aminopeptidase Bd1518 72 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 42524672 Pathogen - hypothetical protein Bd3301 1 None None None 42523265 Common - putative carboxypeptidase Bd1776 26 COG3608 COG3608, Predicted deacylase General function prediction only 42524525 Common - putative exonuclease Bd3140 6 COG3857 AddB, ATP-dependent nuclease, subunit B DNA replication, recombination, and repair 42522018 Common atoB acetyl-CoA acetyltransferase Bd0404 177 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 42522899 Common - hypothetical protein Bd1380 20 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 42523913 Pathogen - hypothetical protein Bd2483 1 None None None 42521984 Common - hypothetical protein Bd0370 124 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 42524289 Pathogen - hypothetical protein Bd2882 1 None None None 42524833 Common pip proline iminopeptidase Bd3480 92 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42524608 Common thyA thymidylate synthase Bd3230 142 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 42523463 Common - hypothetical protein Bd1986 9 COG4121 COG4121, Uncharacterized conserved protein Function unknown 42522431 Common phoD Alkylphosphonate ABC tranporter Bd0859 96 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 42524062 Common - hypothetical protein Bd2642 29 COG4254 COG4254, Uncharacterized protein conserved in bacteria Function unknown 42523708 Common - hypothetical protein Bd2250 15 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 42522956 Common - hypothetical protein Bd1440 4 None None None 42524240 Common mcpA methyl-accepting chemotaxis protein Bd2831 163 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42524940 Common - hypothetical protein Bd3596 22 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 42523810 Pathogen - hypothetical protein Bd2364 1 None None None 42524089 Common cyaA10 putative adenylate cyclase Bd2671 16 COG3605 PtsP, Signal transduction protein containing GAF and PtsI domains Signal transduction mechanisms 42524303 Pathogen - hypothetical protein Bd2898 1 None None None 42523888 Common - ABC transporter, periplasmic amino acid-binding protein Bd2450 16 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42524230 Common rluA Pseudouridylate synthase, 23S RNA-specific Bd2820 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 42523825 Pathogen - hypothetical protein Bd2379 1 None None None 42524923 Common - putative soluble lytic murein transglycosylase Bd3575 175 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 42524624 Pathogen - hypothetical protein Bd3248 1 None None None 42524095 Pathogen - hypothetical protein Bd2677 1 None None None 42522346 Common - hypothetical protein Bd0763 42 None None None 42525212 Common nuoH NADH dehydrogenase I chain H Bd3891 185 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 42524412 Pathogen - hypothetical protein Bd3017 1 None None None 42522244 Common tetA tetracycline-efflux transporter Bd0657 204 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42524804 Common hemL glutamate-1-semialdehyde 2,1-aminomutase Bd3449 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 42523848 Common rsbU Sigma factor sigB regulation protein rsbU Bd2404 128 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 42524938 Common gst hypothetical protein Bd3594 109 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 42523337 Common - putative transglycosylase-associated protein Bd1857 67 COG2261 COG2261, Predicted membrane protein Function unknown 42524942 Common - hypothetical protein Bd3598 2 None None None 42522457 Pathogen - hypothetical protein Bd0886 1 None None None 42523349 Common rmlB dTDP-glucose 4,6-dehydratase Bd1869 232 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 42524815 Common rhlB ATP-dependent RNA helicase Bd3461 234 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 42522651 Pathogen - hypothetical protein Bd1102 1 None None None 42522378 Common polA DNA polymerase I Bd0802 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 42523136 Pathogen - hypothetical protein Bd1633 1 None None None 42522292 Common - Trypsin Bd0706 31 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42524499 Pathogen - hypothetical protein Bd3111 1 None None None 42523881 Common - hypothetical protein Bd2441 44 COG2899 COG2899, Uncharacterized protein conserved in bacteria Function unknown 42522325 Common pgi hypothetical protein Bd0741 210 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 42522000 Pathogen recA recA protein Bd0386 1 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 42521821 Common csdB hypothetical protein Bd0189 238 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 42522081 Common - hypothetical protein Bd0473 31 COG1716 COG1716, FOG: FHA domain Signal transduction mechanisms 42522210 Common - hypothetical protein Bd0619 2 None None None 42524958 Common - hypothetical protein Bd3615 130 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 42524680 Common - hypothetical protein Bd3309 6 None None None 42521908 Common - SCO1/SenC family protein Bd0285 18 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 42523225 Common - sterol desaturase family protein Bd1729 29 COG3000 ERG3, Sterol desaturase Lipid metabolism 42524342 Common - hypothetical protein Bd2939 4 None None None 42523584 Common rnhB ribonuclease HII (RNase HII) Bd2116 237 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 42521707 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B Bd0060 214 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 42523211 Common hppA membrane-bound proton-translocating pyrophosphatase Bd1715 98 COG3808 OVP1, Inorganic pyrophosphatase Energy production and conversion 42523053 Common nusA transcription elongation factor NusA Bd1546 218 COG0195 NusA, Transcription elongation factor Transcription 42525207 Common nuoN NADH dehydrogenase I chain N Bd3886 210 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 42524058 Common - putative globin Bd2638 68 COG2346 COG2346, Truncated hemoglobins General function prediction only 42524850 Common aroB 3-dehydroquinate synthetase Bd3497 194 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 42521946 Common rhlE putative ATP-dependent RNA helicase Bd0324 243 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 42524594 Pathogen - putative histidine kinase Bd3214 1 None None None 42521829 Common yqiD geranyltranstransferase Bd0199 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 42522472 Common lysR transcriptional regulator, LysR family Bd0902 139 COG0583 LysR, Transcriptional regulator Transcription 42524993 Common - hypothetical protein Bd3652 16 None None None 42522335 Pathogen - putative cation-transporting ATPase Bd0752 1 None None None 42524575 Common - universal stress protein Bd3193 7 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 42521904 Common fabG 3-oxoacyl-(acyl carrier protein) reductase Bd0281 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 42522390 Common - L-sorbosone dehydrogenase Bd0814 27 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 42522792 Common - hypothetical protein Bd1268 48 None None None 42521843 Common - two-component sensor histidine kinase Bd0216 221 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 42523035 Pathogen - hypothetical protein Bd1528 1 None None None 42523783 Common - hypothetical protein Bd2335 226 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42521685 Common - putative oxidoreductase Bd0037 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 42522772 Common - putative integral membrane protein Bd1243 75 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 42523318 Common mdh malate dehydrogenase Bd1833 216 COG0281 SfcA, Malic enzyme Energy production and conversion 42522336 Pathogen - hypothetical protein Bd0753 1 None None None 42524272 Common top6B DNA topoisomerase VI subunit B Bd2865 34 COG1389 COG1389, DNA topoisomerase VI, subunit B DNA replication, recombination, and repair 42525012 Common - transcriptional regulator Bd3675 63 COG1309 AcrR, Transcriptional regulator Transcription 42524275 Pathogen - hypothetical protein Bd2868 1 COG4652 COG4652, Uncharacterized protein conserved in bacteria Function unknown 42522211 Common - putative two-component sensor histidine kinase Bd0620 221 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 42523397 Common glpX fructose 1,6-bisphosphatase II Bd1919 112 COG1494 GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins Carbohydrate transport and metabolism 42522736 Common - isovaleryl-CoA dehydrogenase Bd1201 163 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 42523043 Pathogen - hypothetical protein Bd1536 1 None None None 42523595 Common yadH ABC transporter integral membrane protein Bd2128 134 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 42522067 Pathogen - hypothetical protein Bd0459 2 None None None 42522522 Pathogen - hypothetical protein Bd0956 1 None None None 42521674 Common sdhB succinate dehydrogenase/fumarate reductase iron-sulfur subunit Bd0026 59 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 42523987 Pathogen - hypothetical protein Bd2564 1 None None None 42521880 Common - similar to ATP dependent helicase Bd0255 109 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 42523803 Common dedA dedA protein Bd2357 18 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 42522946 Common - hypothetical protein Bd1430 12 None None None 42524799 Common - hypothetical protein Bd3442 3 None None None 42525179 Common pnp purine nucleoside phosphorylase Bd3856 141 COG0005 Pnp, Purine nucleoside phosphorylase Nucleotide transport and metabolism 42522312 Common - hypothetical protein Bd0727 46 None None None 42523393 Common - putative outer membrane secretion protein Bd1915 120 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 42524385 Common rplJ 50S ribosomal protein L10 Bd2989 201 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 42524174 Common nadC hypothetical protein Bd2762 204 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 42524880 Common - signal transduction histidine kinase Bd3528 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42523640 Pathogen - putative flagellar GTP binding protein Bd2177 1 None None None 42525221 Common atpD ATP synthase, delta (OSCP) subunit, ATP synthase, delta (OSCP) subunit Bd3900 142 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 42523946 Common - dipeptidyl anminopeptidase Bd2519 105 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 42522904 Common glpQ putative phosphodiesterase Bd1385 171 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 42524260 Common - hypothetical protein Bd2852 2 None None None 42523518 Common thrB homoserine kinase Bd2045 18 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 42524258 Common - putative secreted protein Bd2850 8 None None None 42522843 Common - putative sensory protein Bd1322 71 None None None 42523792 Common - hypothetical protein Bd2346 10 None None None 42525004 Common - hypothetical protein Bd3665 3 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 42525134 Common sucC succinyl-CoA synthetase beta chain Bd3810 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 42523288 Common - hypothetical protein Bd1800 6 None None None 42523756 Common nfeD membrane protein necessary for nodulation/competitiveness Bd2305 73 COG1030 NfeD, Membrane-bound serine protease (ClpP class) Posttranslational modification, protein turnover, chaperones 42523790 Common mtbA mtbA Bd2344 128 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42522703 Common - hypothetical protein Bd1162 90 COG0778 NfnB, Nitroreductase Energy production and conversion 42523762 Common uvrC excinuclease ABC subunit C Bd2311 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 42524912 Common dfp flavoprotein Bd3562 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 42524137 Pathogen - hypothetical protein Bd2720 1 None None None 42522531 Common prc tail-specific protease Bd0967 181 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 42524735 Common - ABC-type Manganese and zinc uptake system, ATPase component. Bd3372 229 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 42522682 Common - hypothetical protein Bd1137 32 COG5184 ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins Cell division and chromosome partitioning / Cytoskeleton 42524503 Common cysE hypothetical protein Bd3116 193 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 42524752 Common ragB RagB (Two-component sensor histidine kinase) Bd3393 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42524113 Common - hypothetical protein Bd2695 189 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 42523693 Common yajC preprotein translocase YajC subunit Bd2235 134 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 42523574 Common hua DNA-binding protein HU-alpha (HU-2) Bd2104 213 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 42522584 Common gldG ABC-type transport system involved in gliding motility Bd1025 25 COG3225 GldG, ABC-type uncharacterized transport system involved in gliding motility, auxiliary component Cell motility and secretion 42522540 Pathogen - putative hydrolase Bd0978 1 None None None 42525055 Pathogen - hypothetical protein Bd3724 1 None None None 42523484 Common rpiB ribose 5-phosphate isomerase B Bd2009 127 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 42523975 Pathogen - hypothetical protein Bd2551 1 None None None 42522322 Pathogen - hypothetical protein Bd0738 1 None None None 42522436 Common pilN fimbrial assembly membrane protein Bd0864 14 COG3166 PilN, Tfp pilus assembly protein PilN Cell motility and secretion / Intracellular trafficking and secretion 42524182 Common - hypothetical protein Bd2771 8 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 42524117 Common amiC hypothetical protein Bd2699 179 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 42524392 Common pyrF orotidine 5'-phosphate decarboxylase Bd2996 169 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 42524395 Pathogen - hypothetical protein Bd2999 1 COG2382 Fes, Enterochelin esterase and related enzymes Inorganic ion transport and metabolism 42522402 Pathogen - hypothetical protein Bd0826 1 None None None 42523618 Common glpT glycerol-3-phosphate transporter Bd2152 43 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 42522300 Common mutT probable pyrophosphohydrolase Bd0714 137 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 42521853 Pathogen - hypothetical protein Bd0227 1 None None None 42523906 Common - putative signal peptide protein containing LysM motif Bd2473 26 COG1652 XkdP, Uncharacterized protein containing LysM domain Function unknown 42523668 Common - ABC-type transporter Bd2207 156 COG0661 AarF, Predicted unusual protein kinase General function prediction only 42524536 Common - AMP-ligase Bd3151 217 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 42523030 Pathogen - hypothetical protein Bd1523 1 None None None 42523599 Pathogen - hypothetical protein Bd2132 1 None None None 42524977 Pathogen - hypothetical protein Bd3634 1 None None None 42523672 Pathogen - hypothetical protein Bd2211 1 None None None 42522960 Common - Serine protease, subtilase family Bd1444 52 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42523144 Pathogen - hypothetical protein Bd1642 1 None None None 42525025 Common - hypothetical protein Bd3688 143 COG0583 LysR, Transcriptional regulator Transcription 42522970 Pathogen - hypothetical protein Bd1457 3 None None None 42522713 Common ftsY signal recognition particle-docking protein FtsY Bd1173 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 42521722 Pathogen - hypothetical protein Bd0076 1 None None None 42524702 Common - hypothetical protein Bd3334 25 None None None 42523778 Pathogen - hypothetical protein Bd2329 1 None None None 42524313 Common ycbB putative amidase Bd2908 74 COG2989 COG2989, Uncharacterized protein conserved in bacteria Function unknown 42523091 Pathogen - hypothetical protein Bd1586 1 None None None 42524190 Common - hypothetical protein Bd2780 18 None None None 42523944 Common ahpC alkyl hydroperoxide reductase, C22 subunit Bd2517 225 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 42522191 Common - ABC-type transporter, periplasmic component Bd0597 11 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42523972 Common - hypothetical protein Bd2547 10 None None None 42524726 Pathogen - hypothetical protein Bd3363 1 None None None 42522276 Common - hypothetical protein Bd0690 8 COG5459 COG5459, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 42522123 Common mltA putative murein transglycosylase A Bd0519 2 COG2821 MltA, Membrane-bound lytic murein transglycosylase Cell envelope biogenesis, outer membrane 42523436 Common - hypothetical protein Bd1959 11 COG4850 COG4850, Uncharacterized conserved protein Function unknown 42524310 Common - transcriptional regulator, LysR family Bd2905 179 COG0583 LysR, Transcriptional regulator Transcription 42522758 Common malF maltose/maltodextrin transport permease homologue Bd1227 146 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 42524882 Pathogen - hypothetical protein Bd3530 1 None None None 42524549 Common lolC2 ABC-type lipoprotein transporter, permease protein. Bd3166 59 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 42525007 Common - hypothetical protein Bd3668 29 COG3102 COG3102, Uncharacterized protein conserved in bacteria Function unknown 42522874 Pathogen - hypothetical protein Bd1355 1 None None None 42522053 Common rbsA Sugar ABC transporter, ATP-binding protein Bd0444 249 COG3845 COG3845, ABC-type uncharacterized transport systems, ATPase components General function prediction only 42522543 Common corB Mg2+ and Co2+ transporter Bd0981 218 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 42522583 Common gldF ABC-type transport system permease protein Bd1024 38 COG1668 NatB, ABC-type Na+ efflux pump, permease component Energy production and conversion / Inorganic ion transport and metabolism 42522683 Common yhfA hypothetical protein Bd1139 71 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 42522994 Common - hypothetical protein Bd1483 4 None None None 42522881 Pathogen - hypothetical protein Bd1362 1 None None None 42525087 Pathogen - hypothetical protein Bd3759 1 None None None 42523625 Common - putative permease Bd2161 106 COG0730 COG0730, Predicted permeases General function prediction only 42524561 Common acnA aconitate hydratase Bd3178 223 COG1048 AcnA, Aconitase A Energy production and conversion 42522044 Pathogen - hypothetical protein Bd0434 1 None None None 42524461 Pathogen - hypothetical protein Bd3069 1 None None None 42522178 Pathogen - putative collagen-like surface protein Bd0583 1 None None None 42522102 Pathogen - hypothetical protein Bd0495 1 None None None 42524314 Pathogen - hypothetical protein Bd2909 1 None None None 42524328 Common - Serine protease Bd2923 22 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42522035 Common - hypothetical protein Bd0421 8 COG0583 LysR, Transcriptional regulator Transcription 42523802 Pathogen - hypothetical protein Bd2356 1 None None None 42522488 Common pspE phage shock protein Bd0919 68 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 42522428 Common carA carbamoyl phosphate synthase small subunit Bd0856 234 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 42523607 Common polC DNA polymerase III subunit epsilon Bd2140 83 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 42524849 Common - hypothetical protein Bd3496 84 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 42524635 Common - putative transmembrane protein Bd3260 35 None None None 42525201 Common - hypothetical protein Bd3880 3 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 42524842 Pathogen - hypothetical protein Bd3489 1 None None None 42523098 Pathogen - hypothetical protein Bd1593 1 None None None 42524795 Common - hypothetical protein Bd3438 3 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 42524299 Common - putative phosphatidate cytidiltransferase Bd2894 122 COG4589 COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase General function prediction only 42524361 Common rplR 50S ribosomal protein L18 Bd2960 215 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 42523481 Pathogen - hypothetical protein Bd2005 1 None None None 42522156 Common menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase Bd0558 18 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 42523545 Pathogen - hypothetical protein Bd2073 1 None None None 42524283 Pathogen - hypothetical protein Bd2876 1 None None None 42523854 Common - conserved hypothetical iron-regulated protein Bd2410 22 COG3016 PhuW, Uncharacterized iron-regulated protein Function unknown 42522712 Pathogen - hypothetical protein Bd1172 1 None None None 42522208 Common - putative lipopolysaccharide heptosyltransferase-I Bd0616 9 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 42523193 Common - putative glycosyltransferase Bd1696 96 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 42523912 Common - hypothetical protein Bd2480 5 None None None 42522923 Pathogen - hypothetical protein Bd1405 1 None None None 42525125 Pathogen - hypothetical protein Bd3799 1 None None None 42523100 Common - general secretion pathway protein F Bd1595 146 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 42524053 Common xdhA xanthine dehydrogenase Bd2633 122 COG4630 XdhA, Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A Nucleotide transport and metabolism 42522513 Common - putative N6-adenine-specific DNA methylase Bd0946 133 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 42523129 Common - isopentenyl pyrophosphate isomerase Bd1626 80 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 42525013 Common - hypothetical protein Bd3676 2 None None None 42522933 Pathogen - hypothetical protein Bd1416 1 None None None 42523182 Common - Mannose-1-phosphate guanyltransferase Bd1685 225 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 42521677 Common - subtilase Bd0029 137 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42521800 Common - hypothetical protein Bd0164 6 None None None 42524828 Common - hypothetical protein Bd3475 223 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 42524701 Pathogen - hypothetical protein Bd3333 1 None None None 42523675 Common ctaA cytochrome aa3 controlling protein CtaA Bd2217 36 COG1612 CtaA, Uncharacterized protein required for cytochrome oxidase assembly Posttranslational modification, protein turnover, chaperones 42524044 Pathogen - hypothetical protein Bd2624 1 None None None 42521858 Common - two-component response regulator Bd0233 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42522138 Common flgJ flagellar protein FlgJ Bd0536 12 COG3951 COG3951, Rod binding protein Cell envelope biogenesis, outer membrane / Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 42523077 Common - TonB-dependent receptor Bd1572 73 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 42523017 Common pilT pilT; twitching motility protein PilT Bd1510 23 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 42524249 Common - hypothetical protein Bd2841 55 COG2828 COG2828, Uncharacterized protein conserved in bacteria Function unknown 42523384 Pathogen - hypothetical protein Bd1905 1 None None None 42521807 Pathogen - hypothetical protein Bd0173 1 None None None 42522171 Common - Iron-regulated protein A precursor Bd0575 14 COG3487 IrpA, Uncharacterized iron-regulated protein Inorganic ion transport and metabolism 42523036 Common - ABC transporter ATP-binding protein Bd1529 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42523201 Common - putative 2-nitropropane dioxygenase Bd1705 28 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 42522521 Pathogen - hypothetical protein Bd0955 1 None None None 42523926 Common - hypothetical protein Bd2497 10 COG1396 HipB, Predicted transcriptional regulators Transcription 42524692 Common fliR flagellar biosynthetic protein FliR Bd3323 129 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 42523552 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein Bd2080 241 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 42524193 Common - putative amino acid ABC transporter binding protein Bd2783 6 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42524226 Common - putative efflux protein Bd2816 206 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 42523532 Pathogen - hypothetical protein Bd2059 1 None None None 42524839 Common aroAG 3-deoxy-7-phosphoheptulonate synthase Bd3486 167 COG2876 AroA, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 42522417 Common aprT adenine phosphoribosyltransferase Bd0845 166 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 42523343 Common ygcM 6-pyruvoyltetrahydropterin synthase Bd1863 109 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 42522254 Common - nucleoside-specific channel-forming protein tsx precursor Bd0667 18 COG3248 Tsx, Nucleoside-binding outer membrane protein Cell envelope biogenesis, outer membrane 42524426 Pathogen - hypothetical protein Bd3031 2 COG4733 COG4733, Phage-related protein, tail component Function unknown 42523477 Common - YCE I like family protein Bd2001 31 COG2353 COG2353, Uncharacterized conserved protein Function unknown 42521736 Common - hypothetical protein Bd0091 20 COG5591 COG5591, Uncharacterized conserved protein Function unknown 42523517 Common dacA hypothetical protein Bd2044 154 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 42523173 Common - putative O-antigen ligase WaaL Bd1674 11 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 42522458 Common tolC outer membrane export factor Bd0887 102 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 42522566 Common yceI hypothetical protein Bd1005 120 COG2353 COG2353, Uncharacterized conserved protein Function unknown 42522804 Pathogen - hypothetical protein Bd1280 1 None None None 42523649 Pathogen - hypothetical protein Bd2187 1 COG5178 PRP8, U5 snRNP spliceosome subunit RNA processing and modification 42523963 Pathogen - hypothetical protein Bd2538 1 None None None 42521935 Common gidB glucose inhibited division protein B Bd0312 61 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 42523323 Common - acetyltransferase Bd1838 5 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 42523145 Pathogen - hypothetical protein Bd1643 1 None None None 42522667 Common greB hypothetical protein Bd1119 197 COG0782 GreA, Transcription elongation factor Transcription 42522806 Pathogen - hypothetical protein Bd1282 1 None None None 42523740 Common - NADH dehydrogenase Bd2286 206 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 42525194 Common livJ Branched-chain amino acid transport system substrate-binding protein Bd3873 104 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 42524017 Pathogen - hypothetical protein Bd2595 1 None None None 42524930 Pathogen - hypothetical protein Bd3582 1 None None None 42522227 Common - dimethyladenosine transferase Bd0637 244 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 42524295 Common - oxidoreductase Bd2890 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 42524807 Common hemE uroporphyrinogen decarboxylase Bd3452 174 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 42522684 Pathogen - hypothetical protein Bd1140 1 None None None 42524540 Pathogen - hypothetical protein Bd3155 1 None None None 42523889 Pathogen - hypothetical protein Bd2451 1 COG5239 CCR4, mRNA deadenylase, exonuclease subunit and related nucleases RNA processing and modification 42524646 Pathogen - putative metalloendopeptidase Bd3273 1 None None None 42523895 Common - penicillin-binding protein Bd2460 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 42521958 Common slyD FKBP-type peptidyl-prolyl cis-trans isomerase Bd0336 126 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 42523160 Common pstA phosphate ABC transporter, permease protein Bd1660 222 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 42522088 Pathogen - hypothetical protein Bd0480 1 None None None 42523638 Pathogen - hypothetical protein Bd2175 1 None None None 42521832 Common pepP aminopeptidase P Bd0202 208 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 42523919 Common ruvC crossover junction endodeoxyribonuclease RuvC Bd2489 197 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 42524939 Pathogen - hypothetical protein Bd3595 1 None None None 42523377 Common - putative trypsin Bd1898 2 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42522790 Pathogen - hypothetical protein Bd1266 1 None None None 42523139 Common pheS phenylalanyl-tRNA synthetase, alpha subunit Bd1637 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 42524355 Common rpsM 30S ribosomal protein S13 Bd2953 247 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 42521892 Common glnB regulatory protein P-II for glutamine synthetase Bd0268 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 42522968 Common pvcB pyoverdine biosynthesis protein PvcB Bd1455 26 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 42522265 Pathogen - hypothetical protein Bd0678 1 None None None 42522599 Common tatD TatD related DNase Bd1042 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 42524811 Common - putative murein hydrolase Bd3457 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 42523275 Common - hypothetical protein Bd1787 12 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 42524832 Pathogen - hypothetical protein Bd3479 1 None None None 42524660 Common ygiD hypothetical protein Bd3288 86 COG3384 COG3384, Uncharacterized conserved protein Function unknown 42522898 Common - hypothetical protein Bd1379 5 None None None 42521862 Common - hypothetical protein Bd0237 119 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 42522613 Common msrA hypothetical protein Bd1058 204 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 42523567 Common - 3-oxoacid CoA-transferase subunit B Bd2097 91 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 42522398 Pathogen - hypothetical protein Bd0822 1 None None None 42522670 Common - hypothetical protein Bd1122 2 None None None 42524895 Common - 4-hydroxyphenylpyruvate dioxygenase Bd3543 77 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 42523735 Common malA alpha-D-1,4-glucosidase Bd2279 164 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 42523847 Common - hypothetical protein Bd2403 2 None None None 42524341 Pathogen - hypothetical protein Bd2938 1 None None None 42522551 Common aat leucyl/phenylalanyl-tRNA--protein transferase Bd0990 134 COG2360 Aat, Leu/Phe-tRNA-protein transferase Posttranslational modification, protein turnover, chaperones 42523300 Pathogen - hypothetical protein Bd1814 1 COG3219 COG3219, Uncharacterized protein conserved in bacteria Function unknown 42524146 Common sucB 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Bd2729 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 42522812 Common - hypothetical protein Bd1289 120 COG2127 COG2127, Uncharacterized conserved protein Function unknown 42523031 Pathogen - hypothetical protein Bd1524 1 COG4575 ElaB, Uncharacterized conserved protein Function unknown 42523506 Pathogen - hypothetical protein Bd2032 1 None None None 42522448 Pathogen - hypothetical protein Bd0877 1 None None None 42523686 Common has HAS ABC exporter outer membrane component Bd2228 37 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 42522620 Pathogen - hypothetical protein Bd1065 1 None None None 42524514 Common - hypothetical protein Bd3128 112 COG2267 PldB, Lysophospholipase Lipid metabolism 42523059 Common pepR probable zinc proteinase Bd1552 196 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 42521885 Common - hypothetical protein Bd0260 2 COG4313 COG4313, Protein involved in meta-pathway of phenol degradation Energy production and conversion 42523018 Common pilC pilC; bacterial type II secretion system protein Bd1511 143 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 42522829 Common - hypothetical protein Bd1307 7 None None None 42523633 Common hylB putative hemolysins Bd2170 214 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 42524485 Common fabD malonyl CoA-acyl carrier protein transacylase Bd3096 119 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 42523655 Common appC ABC transporter, membrane spanning protein Bd2193 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 42523290 Common fadD long-chain fatty-acid-CoA ligase Bd1803 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 42522036 Common aarF Gene product involved in ubiquinone production. Bd0422 185 COG0661 AarF, Predicted unusual protein kinase General function prediction only 42524127 Common oppC oligopeptide transport system permease protein Bd2709 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 42524439 Common mgsA methylglyoxal synthase Bd3047 88 COG1803 MgsA, Methylglyoxal synthase Carbohydrate transport and metabolism 42524743 Common - hypothetical protein Bd3384 159 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 42523935 Common - probable phosphoesterase Bd2508 9 COG1409 Icc, Predicted phosphohydrolases General function prediction only 42523782 Common - serin protease Bd2334 7 COG3591 COG3591, V8-like Glu-specific endopeptidase Amino acid transport and metabolism 42523125 Common - probable Enterochelin esterase Bd1622 24 COG2382 Fes, Enterochelin esterase and related enzymes Inorganic ion transport and metabolism 42524554 Common dcp peptidyl-dipeptidase Bd3171 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 42525105 Pathogen - hypothetical protein Bd3778 1 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 42522075 Pathogen - hypothetical protein Bd0467 1 None None None 42522366 Common - disulfide interchange protein Bd0789 93 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 42525075 Pathogen - hypothetical protein Bd3745 1 COG5373 COG5373, Predicted membrane protein Function unknown 42523358 Common - ABC-type multidrug transporter permease protein Bd1878 134 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 42523156 Common - Ferric uptake regulator-like protein Bd1656 180 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 42522024 Common hag flagellin Bd0410 122 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 42523831 Common fecB ABC-type Fe3+-siderophores transport systems Bd2385 42 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 42525166 Pathogen - hypothetical protein Bd3843 1 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 42523354 Pathogen - hypothetical protein Bd1874 1 None None None 42521878 Common - DNA methylation and regulatory protein Ada Bd0253 126 COG2169 Ada, Adenosine deaminase Nucleotide transport and metabolism 42522143 Common - putative transmembrane protein Bd0543 39 COG1699 COG1699, Uncharacterized protein conserved in bacteria Function unknown 42522854 Common - cell wall surface anchor family protein Bd1334 49 None None None 42522592 Common - hypothetical protein Bd1034 4 COG4850 COG4850, Uncharacterized conserved protein Function unknown 42523873 Common - hypothetical protein Bd2432 37 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 42524384 Common rplL 50S ribosomal protein L7/L12 Bd2987 214 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 42522642 Pathogen - hypothetical protein Bd1090 1 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 42524821 Common cheR chemotaxis protein methyltransferase Bd3468 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 42524379 Common rpsL 30S ribosomal protein S12 Bd2981 244 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 42522644 Common - hypothetical protein Bd1093 112 COG1806 COG1806, Uncharacterized protein conserved in bacteria Function unknown 42524167 Pathogen - hypothetical protein Bd2754 1 None None None 42523996 Pathogen - hypothetical protein Bd2573 1 None None None 42523713 Common - hypothetical protein Bd2256 93 COG1720 COG1720, Uncharacterized conserved protein Function unknown 42525056 Pathogen - hypothetical protein Bd3725 1 None None None 42521652 Common dnaN DNA polymerase III, beta subunit Bd0002 216 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 42524522 Common - hypothetical protein Bd3137 3 None None None 42523614 Pathogen - hypothetical protein Bd2148 1 None None None 42524138 Common hutI imidazolonepropionase Bd2721 136 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 42525169 Common - probable nicotinate-nucleotide adenylyltransferase Bd3846 212 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 42523900 Pathogen - hypothetical protein Bd2465 1 None None None 42524915 Common - ABC transporter, ATP-binding protein Bd3566 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42521719 Common - polysaccharide deacetylase-related protein Bd0073 12 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 42522702 Pathogen - hypothetical protein Bd1161 1 None None None 42523024 Pathogen - hypothetical protein Bd1517 1 None None None 42524853 Common - uracil-DNA glycosylase Bd3500 129 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 42523197 Common wbpM Nucleotide sugar epimerase/dehydratase Bd1700 165 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42523986 Pathogen - hypothetical protein Bd2563 1 COG4967 PilV, Tfp pilus assembly protein PilV Cell motility and secretion / Intracellular trafficking and secretion 42523717 Pathogen - hypothetical protein Bd2260 1 None None None 42523901 Pathogen - hypothetical protein Bd2467 1 None None None 42523473 Common - putative flavoprotein Bd1997 57 COG0431 COG0431, Predicted flavoprotein General function prediction only 42521768 Common astD succinylglutamic semialdehyde dehydrogenase Bd0131 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 42525081 Common clpX ATP-dependent protease ATP-binding subunit Bd3753 226 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 42521725 Common dedA DedA protein Bd0080 174 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 42524751 Common - hypothetical protein Bd3392 4 None None None 42523308 Common - hypothetical protein Bd1822 23 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 42522418 Common - putative MTA/SAH nucleosidase Bd0846 85 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 42523936 Pathogen - hypothetical protein Bd2509 1 None None None 42524440 Common clpB ATPase with chaperone activity, two ATP-binding domains Bd3048 219 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 42521856 Common - putative sporulation protein R Bd0231 71 COG2719 SpoVR, Uncharacterized conserved protein Function unknown 42522988 Pathogen - hypothetical protein Bd1477 1 None None None 42521682 Common rplI 50S ribosomal protein L9 Bd0034 214 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 42523285 Common - hypothetical protein Bd1797 3 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 42522500 Common mcp hypothetical protein Bd0932 146 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42523695 Common queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase Bd2237 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 42524473 Common nuoF NADH dehydrogenase I, F subunit Bd3083 168 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 42524723 Common - sensory transduction histidine kinase Bd3359 222 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 42523621 Common - putative transcriptional regulator Bd2155 58 COG1309 AcrR, Transcriptional regulator Transcription 42524189 Common - putative amine oxidase Bd2779 19 COG1232 HemY, Protoporphyrinogen oxidase Coenzyme metabolism 42524318 Common - hypothetical protein Bd2913 10 None None None 42521886 Common tsr chemotaxis protein Bd0262 152 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42522919 Common sodC superoxide dismutase Bd1401 87 COG2032 SodC, Cu/Zn superoxide dismutase Inorganic ion transport and metabolism 42522001 Pathogen - hypothetical protein Bd0387 1 None None None 42522705 Common - putative ribosomal protein N-acetyltransferase Bd1164 68 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 42523013 Common - Sensory transduction histidine kinase Bd1506 222 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 42524274 Common - hypothetical protein Bd2867 4 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 42524433 Common ribB riboflavin synthase subunit alpha Bd3039 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 42523419 Common rncS ribonuclease III Bd1941 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 42523426 Common purB hypothetical protein Bd1949 240 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 42522439 Common pilQ fimbrial assembly protein Bd0867 145 COG4796 HofQ, Type II secretory pathway, component HofQ Intracellular trafficking and secretion 42522977 Common - DNA polymerase III, delta subunit Bd1464 105 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 42525062 Common - hypothetical protein Bd3732 169 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 42522409 Common - hypothetical abductin-like protein Bd0834 7 COG3456 COG3456, Uncharacterized conserved protein, contains FHA domain Signal transduction mechanisms 42522246 Pathogen - hypothetical protein Bd0659 1 None None None 42523598 Common - hypothetical protein Bd2131 115 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 42523406 Common ftsH cell division protein Bd1928 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 42525042 Pathogen - hypothetical protein Bd3707 1 None None None 42522997 Common - metal-dependent hydrolase, putative Bd1487 207 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 42522479 Pathogen - putative redox protein Bd0909 2 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 42523927 Common - hypothetical protein Bd2498 23 COG3884 FatA, Acyl-ACP thioesterase Lipid metabolism 42521939 Common - hypothetical protein Bd0317 2 None None None 42524572 Common ftsA cell division protein FtsA Bd3190 178 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 42522616 Common hisC histidinol-phosphate aminotransferase Bd1061 237 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 42523137 Pathogen - putative response regulator Bd1634 1 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42522148 Common menE menE; O-succinylbenzoate-CoA ligase Bd0548 160 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 42523210 Common - putative RNA polymerase ECF-type sigma factor Bd1714 113 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 42522622 Common sppA signal peptide peptidase Bd1067 190 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 42525067 Pathogen - hypothetical protein Bd3737 1 None None None 42522771 Pathogen - hypothetical protein Bd1242 1 COG1714 COG1714, Predicted membrane protein/domain Function unknown 42522617 Common cmk hypothetical protein Bd1062 207 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 42523236 Pathogen - putative sulfurylase Bd1742 1 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 42524976 Common aspG asparaginase Bd3633 38 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 42523907 Common ybgF hypothetical protein Bd2474 24 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 42523556 Common - cation:proton antiporter Bd2084 202 COG4651 RosB, Kef-type K+ transport system, predicted NAD-binding component Inorganic ion transport and metabolism 42521826 Common - hypothetical protein Bd0194 9 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42524873 Common - transcriptional reguator, TetR family Bd3521 41 COG1309 AcrR, Transcriptional regulator Transcription 42525095 Pathogen - hypothetical protein Bd3767 1 None None None 42522332 Pathogen papC pilus assembly protein Bd0749 1 None None None 42523073 Common gmk hypothetical protein Bd1568 214 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 42524027 Common - hypothetical protein Bd2607 72 COG1262 COG1262, Uncharacterized conserved protein Function unknown 42523396 Common - putative esterase Bd1918 45 COG0824 FcbC, Predicted thioesterase General function prediction only 42523983 Pathogen - hypothetical protein Bd2560 1 None None None 42524311 Common ytfG putative oxidoreductase Bd2906 97 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42522797 Pathogen - hypothetical protein Bd1273 1 None None None 42523745 Pathogen - hypothetical protein Bd2293 1 None None None 42523420 Common era GTP-binding protein Era Bd1942 220 COG1159 Era, GTPase General function prediction only 42521842 Pathogen - hypothetical protein Bd0214 1 COG4982 COG4982, 3-oxoacyl- acyl-carrier protein 42524596 Pathogen - hypothetical protein Bd3217 1 None None None 42523167 Common algI alginate o-acetyltransferase AlgI Bd1667 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 42522681 Pathogen - hypothetical protein Bd1136 1 None None None 42522768 Common - hypothetical protein Bd1238 28 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 42522528 Common - putative hydrolase Bd0963 25 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42524537 Pathogen - putative manganese transport system permease protein Bd3152 2 None None None 42523445 Common Pts 6-pyruvoyltetrahydropterin synthase Bd1968 23 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 42522636 Pathogen - hypothetical protein Bd1082 1 None None None 42521690 Pathogen - hypothetical protein Bd0042 1 None None None 42524173 Common - putative phosphate regulon protein Bd2761 183 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 42523089 Pathogen - hypothetical protein Bd1584 1 None None None 42523042 Common - two-component hybrid sensor and regulator Bd1535 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42524754 Common flgE hypothetical protein Bd3395 126 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 42522587 Pathogen - hypothetical protein Bd1028 1 None None None 42524990 Common - response regulator Bd3649 219 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42524994 Common ybaA hypothetical protein Bd3653 38 COG5507 COG5507, Uncharacterized conserved protein Function unknown 42522126 Common bsaA hypothetical protein Bd0522 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 42522950 Common - GGDEF domain protein Bd1434 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 42523594 Common - hypothetical protein Bd2127 9 None None None 42523369 Pathogen - hypothetical protein Bd1889 1 None None None 42524263 Common - hypothetical protein Bd2856 26 COG1289 COG1289, Predicted membrane protein Function unknown 42521701 Common - hypothetical protein Bd0054 4 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 42523947 Pathogen - putative lactoylglutathione lyase Bd2520 1 None None None 42522460 Common pcd pterin-4-alpha-carbinolamine dehydratase Bd0889 104 COG2154 COG2154, Pterin-4a-carbinolamine dehydratase Coenzyme metabolism 42521905 Common - putative lysophospholipase Bd0282 24 COG2267 PldB, Lysophospholipase Lipid metabolism 42523498 Common - hypothetical protein Bd2023 15 None None None 42523252 Common - hypothetical protein Bd1761 2 None None None 42524772 Common - ABC transporter substrate binding protein Bd3413 11 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 42523315 Pathogen - hypothetical protein Bd1830 1 None None None 42524736 Pathogen - ABC-type zinc and manganese transporter, ATPase component Bd3373 1 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 42523562 Pathogen - hypothetical protein Bd2091 1 None None None 42523788 Common - mate efflux family protein Bd2342 176 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 42524952 Common - hypothetical protein Bd3608 40 COG5361 COG5361, Uncharacterized conserved protein Function unknown 42522903 Common - hypothetical protein Bd1384 52 COG4681 COG4681, Uncharacterized protein conserved in bacteria Function unknown 42522947 Common - putative nuclease Bd1431 23 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 42523392 Pathogen - hypothetical protein Bd1914 1 None None None 42524627 Common polC DNA polymerase III alpha subunit Bd3251 186 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 42521909 Common ctaC cytochrome c oxidase, subunit II Bd0286 162 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 42524180 Common yiaD putative outer membrane protein Bd2769 164 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 42522555 Common splA serine protease SplA Bd0994 8 COG3591 COG3591, V8-like Glu-specific endopeptidase Amino acid transport and metabolism 42523352 Common - methyl accepting chemotaxis protein Bd1872 143 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42523278 Pathogen - hypothetical protein Bd1790 1 None None None 42522569 Common thiL thiamine-monophosphate kinase Bd1008 196 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 42525149 Pathogen - hypothetical protein Bd3825 1 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42522324 Common - hypothetical protein Bd0740 6 None None None 42522866 Common - putative response regulatory protein Bd1347 192 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42521654 Common - DNA gyrase subunit B Bd0004 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 42524761 Common fliH flagellar assembly protein Bd3402 28 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 42523899 Common - hypothetical protein Bd2464 15 None None None 42524245 Common - hypothetical protein Bd2836 119 COG2353 COG2353, Uncharacterized conserved protein Function unknown 42523348 Common - putative glycosyltransferase Bd1868 175 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 42524020 Common norQ nitric oxide reductase NorQ protein Bd2598 81 COG0714 COG0714, MoxR-like ATPases General function prediction only 42524085 Common ftsH membrane bound zinc metallopeptidase Bd2667 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 42521930 Common strB streptomycin resistance protein Bd0307 29 COG3570 StrB, Streptomycin 6-kinase Defense mechanisms 42524453 Pathogen - hypothetical protein Bd3061 1 None None None 42522172 Common - thiol oxidoreductase Bd0577 50 COG3488 COG3488, Predicted thiol oxidoreductase Energy production and conversion 42524055 Common XdhC putative xanthine dehydrogenase accessory factor Bd2635 101 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 42521816 Pathogen - hypothetical protein Bd0183 1 None None None 42523876 Pathogen - hypothetical protein Bd2436 1 None None None 42522013 Pathogen - hypothetical protein Bd0399 1 None None None 42521656 Common - hypothetical protein Bd0006 3 None None None 42524659 Pathogen - hypothetical protein Bd3287 1 None None None 42523892 Common - hypothetical protein Bd2456 60 None None None 42523811 Pathogen - hypothetical protein Bd2365 1 None None None 42524506 Common - hypothetical protein Bd3119 8 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 42523209 Pathogen - hypothetical protein Bd1713 1 None None None 42525191 Common hemN oxygen-independent coproporphyrinogen III oxidase, putative Bd3870 213 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 42523824 Common eriC3 chloride channel protein Bd2378 132 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 42523262 Common - ABC transporter solute-binding protein-amino acid transport Bd1773 10 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42524556 Common recN DNA repair protein Bd3173 208 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 42524111 Pathogen - hypothetical protein Bd2693 1 None None None 42524602 Common - Sco1/SenC family protein Bd3223 94 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 42522065 Pathogen - hypothetical protein Bd0457 1 None None None 42522293 Common - FusA/NodT family protein Bd0707 136 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 42523641 Pathogen - hypothetical protein Bd2178 1 None None None 42521991 Pathogen - hypothetical protein Bd0377 1 None None None 42524099 Common - hypothetical protein Bd2681 4 None None None 42523676 Common lon ATP-dependent protease La domain protein Bd2218 28 COG2802 COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease General function prediction only 42523957 Pathogen - hypothetical protein Bd2531 1 None None None 42521916 Pathogen - hypothetical protein Bd0293 2 None None None 42524517 Common rnhA ribonuclease H Bd3131 176 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 42523336 Common kdpD sensor protein kdpD Bd1855 219 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 42522957 Pathogen - hypothetical protein Bd1441 1 None None None 42523003 Common lpxA UDP-N-acetylglucosamine acyltransferase Bd1495 143 COG1043 LpxA, Acyl- acyl carrier protein 42524550 Common lolD2 ABC transporter, ATP-binding protein Bd3167 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 42522371 Pathogen - hypothetical protein Bd0794 1 None None None 42521710 Pathogen - hypothetical protein Bd0063 1 COG5373 COG5373, Predicted membrane protein Function unknown 42521857 Common yciH putative translation initiation factor SUI1 Bd0232 56 COG0023 SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins Translation, ribosomal structure and biogenesis 42524829 Common add hypothetical protein Bd3476 112 COG1816 Add, Adenosine deaminase Nucleotide transport and metabolism 42522226 Common gcp O-sialoglycoprotein endopeptidase Bd0636 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 42524595 Common mraW S-adenosyl-methyltransferase Bd3215 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 42523434 Pathogen - hypothetical protein Bd1957 1 None None None 42521767 Common astA arginine N-succinyltransferase Bd0130 37 COG3138 AstA, Arginine/ornithine N-succinyltransferase beta subunit Amino acid transport and metabolism 42523183 Common neuA probable acylneuraminate cytidylyltransferase Bd1686 59 COG1083 NeuA, CMP-N-acetylneuraminic acid synthetase Cell envelope biogenesis, outer membrane 42522380 Pathogen fliL flagellar protein required for flagellar formation Bd0804 1 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 42524162 Common ssuB ABC transporter ATP-binding protein Bd2748 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 42524307 Common - hypothetical protein Bd2902 3 None None None 42522275 Common - hypothetical protein Bd0689 8 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42523439 Common - putative V8-like Glu-specific endopeptidase Bd1962 7 COG3591 COG3591, V8-like Glu-specific endopeptidase Amino acid transport and metabolism 42522077 Common maf maf protein Bd0469 197 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 42521663 Common - putative transcriptional regulator Bd0013 131 COG0789 SoxR, Predicted transcriptional regulators Transcription 42524016 Common - hypothetical protein Bd2594 3 COG3213 NnrS, Uncharacterized protein involved in response to NO Inorganic ion transport and metabolism 42522097 Pathogen - hypothetical protein Bd0490 1 None None None 42523830 Common - hypothetical protein Bd2384 11 COG3540 PhoD, Phosphodiesterase/alkaline phosphatase D Inorganic ion transport and metabolism 42523858 Pathogen - putative transposase Bd2415 1 None None None 42522924 Pathogen - hypothetical protein Bd1407 1 None None None 42523063 Common - hypothetical protein Bd1556 3 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 42522345 Common maoC maoC family protein Bd0762 80 COG2030 MaoC, Acyl dehydratase Lipid metabolism 42524388 Common nusG transcription antitermination protein Bd2992 215 COG0250 NusG, Transcription antiterminator Transcription 42524865 Pathogen - hypothetical protein Bd3512 1 None None None 42524742 Common - putative DNA-binding protein HU-beta Bd3382 201 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 42522596 Pathogen - hypothetical protein Bd1038 1 None None None 42521688 Common - radical activating enzyme Bd0040 177 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 42523038 Common upp hypothetical protein Bd1531 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 42523440 Pathogen - hypothetical protein Bd1963 1 None None None 42524796 Pathogen - hypothetical protein Bd3439 1 None None None 42522185 Common - Endo III-related endonuclease Bd0591 240 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 42525052 Pathogen - hypothetical protein Bd3720 1 None None None 42522421 Pathogen - hypothetical protein Bd0849 1 None None None 42524076 Common - hypothetical protein Bd2657 2 None None None 42522718 Pathogen - hypothetical protein Bd1179 1 None None None 42522851 Pathogen - hypothetical protein Bd1330 1 None None None 42523050 Pathogen - hypothetical protein Bd1543 1 None None None 42524421 Common - hypothetical protein Bd3026 7 None None None 42522652 Pathogen - hypothetical protein Bd1103 1 None None None 42522365 Pathogen - hypothetical protein Bd0786 1 None None None 42523950 Pathogen - hypothetical protein Bd2524 1 None None None 42524587 Common estA serine esterase, putative Bd3206 52 COG0400 COG0400, Predicted esterase General function prediction only 42525110 Common rrf hypothetical protein Bd3784 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 42524323 Pathogen - hypothetical protein Bd2918 1 None None None 42521976 Common - peptide ABC transporter, permease protein Bd0358 219 COG4174 COG4174, ABC-type uncharacterized transport system, permease component General function prediction only 42525033 Common - hypothetical protein Bd3697 22 None None None 42524134 Pathogen - hypothetical protein Bd2717 1 COG5581 COG5581, Predicted glycosyltransferase Cell envelope biogenesis, outer membrane 42523683 Common - hypothetical protein Bd2225 84 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 42525162 Pathogen - hypothetical protein Bd3839 1 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 42522009 Common tcaB drug resistance transporter, Bcr/CflA family Bd0395 220 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42523769 Common - putative CarD-like transcriptional regulator Bd2320 84 COG1329 COG1329, Transcriptional regulators, similar to M. xanthus CarD Transcription 42524150 Pathogen - hypothetical protein Bd2735 1 None None None 42524302 Common rbn ribonuclease BN Bd2897 70 COG1295 Rbn, Predicted membrane protein Function unknown 42523974 Pathogen - hypothetical protein Bd2550 1 None None None 42523968 Common - ABC-type multidrug transporter with fused ATPase and permease domains. Bd2543 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42521785 Pathogen - hypothetical protein Bd0148 1 None None None 42524370 Common rplV 50S ribosomal protein L22 Bd2971 229 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 42524896 Pathogen - hypothetical protein Bd3544 1 None None None 42522250 Common - chemotaxis protein Bd0663 143 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42522455 Common - cell wall surface anchor family protein Bd0884 25 None None None 42522561 Pathogen - hypothetical protein Bd1000 1 None None None 42525144 Common - hypothetical protein Bd3820 2 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 42524814 Common - hypothetical protein Bd3460 64 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 42524642 Pathogen - hypothetical protein Bd3268 1 None None None 42523200 Pathogen - hypothetical protein Bd1703 1 None None None 42523955 Pathogen - hypothetical protein Bd2529 1 None None None 42525121 Common metB cystathionine gamma-lyase Bd3795 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 42523845 Pathogen - hypothetical protein Bd2401 1 None None None 42522730 Common spl1 putative aminotransferase Bd1194 238 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 42523455 Pathogen - hypothetical protein Bd1978 1 None None None 42523887 Common cdd hypothetical protein Bd2449 113 COG0295 Cdd, Cytidine deaminase Nucleotide transport and metabolism 42524784 Common glmU UDP-N-acetylglucosamine pyrophosphorylase / diamine N-acetyltransferase Bd3425 234 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 42522430 Common carB carbamoyl-phosphate synthase Bd0858 232 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 42522842 Common pcrA ATP-dependent DNA helicase Bd1321 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 42524435 Pathogen - hypothetical protein Bd3041 1 None None None 42524747 Common livG branched-chain amino acid transport system Bd3388 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 42522871 Pathogen - hypothetical protein Bd1352 1 None None None 42522240 Pathogen - hypothetical protein Bd0652 1 None None None 42524048 Common - hypothetical protein Bd2628 28 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 42523729 Common - spb1 gene forserine protease (AJ428902) related protein Bd2272 12 None None None 42524632 Common mcp chemotaxis protein Bd3256 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42522484 Pathogen - putative DNA polymerase epsilon subunit Bd0914 1 None None None 42523469 Common - predicted exporter of the RND superfamily Bd1992 84 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 42524232 Pathogen - hypothetical protein Bd2822 1 None None None 42524484 Pathogen - hypothetical protein Bd3095 1 None None None 42522120 Pathogen - hypothetical protein Bd0516 1 None None None 42522647 Common nusB transcription termination factor nusB Bd1097 176 COG0781 NusB, Transcription termination factor Transcription 42523281 Common rluC ribosomal large subunit pseudouridine synthase C Bd1793 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 42523808 Common - hypothetical protein Bd2362 121 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 42523117 Pathogen - hypothetical protein Bd1613 1 None None None 42523734 Common - hypothetical protein Bd2277 28 COG3758 COG3758, Uncharacterized protein conserved in bacteria Function unknown 42523064 Common - putative outer membrane protein Bd1557 51 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 42525014 Common paiB transcriptional regulator protein Pai2 Bd3677 60 COG2808 PaiB, Transcriptional regulator Transcription 42523110 Common - probable cytochrome C-type biogenesis protein Bd1606 110 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 42522160 Common citZ hypothetical protein Bd0562 194 COG0372 GltA, Citrate synthase Energy production and conversion 42524347 Common - hypothetical protein Bd2944 5 None None None 42524340 Common - hypothetical protein Bd2937 14 None None None 42522934 Common potD hypothetical protein Bd1418 131 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 42523755 Common - band 7 protein Bd2304 208 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 42524369 Common rpsC 30S ribosomal protein S3 Bd2970 248 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 42523355 Common - putative protein secretion protein, HlyD family Bd1875 123 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 42524879 Common afsQ two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') Bd3527 223 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 42523214 Common exoD exopolysaccharide synthesis protein Bd1718 41 COG3932 COG3932, Uncharacterized ABC-type transport system, permease components General function prediction only 42523653 Common appA ABC transporter, substrate binding protein Bd2191 164 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 42523891 Pathogen - hypothetical protein Bd2455 1 None None None 42521798 Common mscL large-conductance mechanosensitive channel Bd0162 143 COG1970 MscL, Large-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 42522294 Common - probable macrolide-specific efflux protein Bd0708 129 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 42522745 Common ydeI hypothetical protein Bd1211 14 COG4430 COG4430, Uncharacterized protein conserved in bacteria Function unknown 42522313 Common - probable amino-acid ABC transporter binding protein Bd0728 13 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42522626 Pathogen - hypothetical protein Bd1072 1 None None None 42524740 Pathogen - putative protein with metalloproteinase domain Bd3378 1 None None None 42525071 Pathogen - hypothetical protein Bd3741 1 None None None 42522611 Common ilvA threonine ammonia-lyase Bd1056 231 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 42523684 Common - Cation efflux system protein, AcrB/AcrD/AcrF family protein Bd2226 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 42522111 Common - hypothetical protein Bd0505 16 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42524669 Pathogen - hypothetical protein Bd3297 1 COG3847 Flp, Flp pilus assembly protein, pilin Flp Intracellular trafficking and secretion 42521927 Pathogen - similar to cell wall-associated hydrolase Bd0304 1 None None None 42521928 Common qor quinone oxidoreductase Bd0305 188 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 42523451 Pathogen - hypothetical protein Bd1974 1 None None None 42523000 Common lolD ABC-type transport, ATP-binding protein Bd1491 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 42521671 Common etfB electron transfer flavoprotein beta-subunit Bd0022 153 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 42522664 Common cyaA Adenylate cyclase Bd1116 102 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 42525188 Common - hypothetical protein Bd3867 5 None None None 42523133 Common mvk hypothetical protein Bd1630 43 COG1577 ERG12, Mevalonate kinase Lipid metabolism 42522023 Pathogen - hypothetical protein Bd0409 1 None None None 42525101 Common galF UTP-glucose-1-phosphate uridylyltransferase Bd3773 231 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 42523537 Common - hypothetical protein Bd2064 156 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 42523812 Common - heptosyltransferase Bd2366 82 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 42522082 Common - hypothetical protein Bd0474 13 COG1716 COG1716, FOG: FHA domain Signal transduction mechanisms 42524080 Pathogen - hypothetical protein Bd2662 1 None None None 42522893 Pathogen - hypothetical protein Bd1374 1 None None None 42522591 Common mepA hypothetical protein Bd1032 40 COG3770 MepA, Murein endopeptidase Cell envelope biogenesis, outer membrane 42524005 Common - ABC-type multidrug transporter with fused ATPase and permease domains. Bd2583 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42524837 Common menD 2-oxoglutarate decarboxylase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Bd3484 83 COG1165 MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Coenzyme metabolism 42525133 Common - ABC transporter, ATP-binding protein Bd3807 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 42523523 Pathogen - hypothetical protein Bd2050 1 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42521655 Common gyrA DNA gyrase subunit A Bd0005 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 42522913 Common - nucleic acid binding protein Bd1395 44 COG2996 COG2996, Uncharacterized protein conserved in bacteria Function unknown 42522045 Pathogen - hypothetical protein Bd0435 1 None None None 42523297 Common lta low specificity L-threonine aldolase protein Bd1811 112 COG2008 GLY1, Threonine aldolase Amino acid transport and metabolism 42521779 Common dfrA dihydroflavonol-4-reductase Bd0142 223 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42523121 Common thrS hypothetical protein Bd1617 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42523714 Common ileS isoleucyl-tRNA synthetase Bd2257 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42522232 Common - methyltransferase Bd0643 47 COG2933 COG2933, Predicted SAM-dependent methyltransferase General function prediction only 42523230 Common - putative carbonic anhydrase Bd1735 88 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 42523433 Pathogen - hypothetical protein Bd1956 1 None None None 42521740 Pathogen - hypothetical protein Bd0095 1 None None None 42521660 Common atpE/H ATP synthase subunit C Bd0010 33 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 42522675 Common - LysR-family regulatory protein Bd1127 186 COG0583 LysR, Transcriptional regulator Transcription 42521961 Common - lipase/acylhydrolase domain protein Bd0340 111 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 42522721 Pathogen - hypothetical protein Bd1183 1 None None None 42523894 Pathogen - hypothetical protein Bd2459 1 None None None 42523321 Common - fatty oxidation complex, alpha subunit Bd1836 190 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 42524985 Pathogen - hypothetical protein Bd3643 1 COG3921 COG3921, Uncharacterized protein conserved in bacteria Function unknown 42524294 Common - hypothetical protein Bd2888 5 None None None 42522014 Pathogen - hypothetical protein Bd0400 1 None None None 42524883 Common - hypothetical protein Bd3531 2 COG0397 COG0397, Uncharacterized conserved protein Function unknown 42524026 Common - probable signale peptide Bd2606 52 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 42522155 Common ispB octaprenyl diphosphate synthase Bd0557 239 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 42523930 Common - 2-methylisocitratelyase 2 Bd2502 131 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 42522539 Pathogen - hypothetical protein Bd0977 1 COG4850 COG4850, Uncharacterized conserved protein Function unknown 42522106 Pathogen - hypothetical protein Bd0500 1 None None None 42524650 Common - hypothetical protein Bd3278 10 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 42521861 Common - Cytosine deaminase Bd0236 206 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 42523153 Common cti cis/trans isomerase Bd1652 15 None None None 42521750 Common TadB hypothetical protein Bd0110 84 COG4965 TadB, Flp pilus assembly protein TadB Intracellular trafficking and secretion 42522089 Pathogen - hypothetical protein Bd0481 1 None None None 42524140 Common - hypothetical protein Bd2723 11 None None None 42523884 Common fur ferric uptake regulation protein Bd2444 206 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 42524349 Common - hypothetical protein Bd2947 3 None None None 42523351 Common rffA TDP-4-oxo-6-deoxy-D-glucose transaminase Bd1871 200 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 42523646 Common - signal transduction sensor histidine kinase Bd2184 127 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42522076 Common - putative peptidoglycan GlcNAc deacetylase Bd0468 110 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 42525001 Pathogen - hypothetical protein Bd3661 1 None None None 42521790 Common - hypothetical protein Bd0154 87 COG3178 COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases General function prediction only 42525203 Common - hypothetical protein Bd3882 17 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 42522809 Common - soluble lytic murein transglycosylase Bd1285 158 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 42521759 Pathogen - hypothetical protein Bd0120 1 None None None 42523543 Common - transcriptional regulator, TetR family Bd2071 45 COG1309 AcrR, Transcriptional regulator Transcription 42524315 Pathogen - hypothetical protein Bd2910 1 None None None 42521970 Pathogen - hypothetical protein Bd0350 1 None None None 42521744 Pathogen - hypothetical protein Bd0100 1 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 42522049 Common - hypothetical protein Bd0440 15 None None None 42523228 Common trmH putative tRNA/rRNA methyltransferase Bd1732 166 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 42522796 Pathogen - hypothetical protein Bd1272 1 None None None 42523333 Common - 3-hydroxybutyryl-CoA dehydrogenase Bd1850 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 42523199 Common - putative glycerophosphoryl diester phosphodiesterase Bd1702 6 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 42522983 Common tsr methyl accepting chemotaxis protein Bd1470 144 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42523837 Pathogen - hypothetical protein Bd2391 1 None None None 42524036 Common ompA probable outer membrane protein Bd2616 159 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 42522114 Common rhbD siderophore biosynthesis protein Bd0508 45 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 42523485 Common fabF 3-oxoacyl-[acyl-carrier-protein] synthase II Bd2010 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 42522822 Common - hypothetical protein Bd1300 159 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42522673 Common mltD membrane-bound lytic murein transglycosylase D precursor Bd1125 147 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 42523558 Common - hypothetical protein Bd2086 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 42522050 Pathogen - hypothetical protein Bd0441 1 None None None 42522139 Common flgM FlgM, negative regulator of flagellin synthesis Bd0537 3 COG2747 FlgM, Negative regulator of flagellin synthesis (anti-sigma28 factor) Transcription / Cell motility and secretion / Intracellular trafficking and secretion 42521791 Pathogen - hypothetical protein Bd0155 1 None None None 42523062 Pathogen - hypothetical protein Bd1555 1 None None None 42522096 Common - putative transporter Bd0489 55 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42524647 Common rfaE ADP-heptose synthase Bd3274 154 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 42522306 Common dopA DOPA-dioxygenase-related protein Bd0721 17 COG3805 DodA, Aromatic ring-cleaving dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 42524932 Common - hypothetical protein Bd3585 21 COG0456 RimI, Acetyltransferases General function prediction only 42522442 Pathogen - hypothetical protein Bd0870 1 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 42522765 Pathogen - hypothetical protein Bd1235 1 None None None 42522733 Common rpsA 30S ribosomal protein S1 Bd1198 210 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 42524474 Common nuoE NADH dehydrogenase I chain E Bd3084 156 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 42524043 Common gltS sodium/glutamate symport carrier protein Bd2623 52 COG0786 GltS, Na+/glutamate symporter Amino acid transport and metabolism 42525156 Common - hypothetical protein Bd3832 4 None None None 42522830 Common nifR Nitrogen regulation protein nifR3 Bd1309 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 42524704 Common rlpA A rare lipoprotein A precursor Bd3336 10 COG3147 DedD, Uncharacterized protein conserved in bacteria Function unknown 42523631 Common pilL putative PilL protein Bd2167 22 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42521804 Common ctpA carboxyl-terminal protease Bd0169 187 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 42524655 Pathogen - hypothetical protein Bd3283 1 None None None 42524360 Common rpsE 30S ribosomal protein S5 Bd2958 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 161611326 Common mdh malate dehydrogenase Bd0928 166 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 42522358 Common pdhC pyruvate dehydrogenase E2 Bd0779 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 42522440 Pathogen - hypothetical protein Bd0868 1 None None None 42524841 Common htrA similar to heat-shock protein htrA serine protease Bd3488 213 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 42525120 Common - hemolysin III Bd3794 117 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 42523984 Pathogen - hypothetical protein Bd2561 1 None None None 42522216 Common - hypothetical protein Bd0625 3 None None None 42521985 Pathogen - hypothetical protein Bd0371 1 None None None 42523512 Pathogen - hypothetical protein Bd2039 1 None None None 42523047 Pathogen - hypothetical protein Bd1540 1 None None None 42522690 Pathogen - hypothetical protein Bd1148 1 None None None 42523505 Common - putative lipoprotein Bd2031 130 COG1520 COG1520, FOG: WD40-like repeat Function unknown 42523342 Pathogen - hypothetical protein Bd1862 1 None None None 42524068 Common fecA outer membrane iron(III) dicitrate receptor Bd2648 121 COG4772 FecA, Outer membrane receptor for Fe3+-dicitrate Inorganic ion transport and metabolism 42522483 Pathogen - hypothetical protein Bd0913 1 None None None 42524610 Pathogen - hypothetical protein Bd3232 1 None None None 42522142 Common flgL FgL, flagellar protein Bd0542 95 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 42523058 Common pnp polynucleotide phosphorylase/polyadenylase Bd1551 239 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 42523410 Common pdxJ pyridoxal phosphate biosynthetic protein PdxJ Bd1932 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 42523376 Pathogen - hypothetical protein Bd1897 1 None None None 42523381 Common - hypothetical protein Bd1902 87 COG2135 COG2135, Uncharacterized conserved protein Function unknown 42523813 Common kdtA hypothetical protein Bd2367 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 42522755 Common amy alpha-amylase Bd1224 38 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 42524427 Common - putative RNA-binding protein Bd3032 3 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 42524597 Common - hypothetical protein Bd3218 53 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 42523531 Pathogen - hypothetical protein Bd2058 1 None None None 42522887 Pathogen - hypothetical protein Bd1368 1 None None None 42521877 Common - hypothetical protein Bd0252 205 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 42523775 Pathogen - hypothetical protein Bd2326 1 None None None 42523867 Common - Rhomboid-like protein (RRP) Bd2426 26 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 42524955 Common - hypothetical protein Bd3611 8 None None None 42525175 Common pilT twitching motility protein Bd3852 223 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 42522855 Common - histidine kinase Bd1335 214 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42524022 Common norC nitric oxide reductase, cytochrome c-containing subunit Bd2601 39 COG2857 CYT1, Cytochrome c1 Energy production and conversion 42522514 Pathogen - putative branched-chain amino acid aminotransferase Bd0947 1 None None None 42523602 Common chaA probable Ca2+/H+ antiporter ChaA Bd2135 57 COG0387 ChaA, Ca2+/H+ antiporter Inorganic ion transport and metabolism 42522338 Common - putative aminopeptidase Bd0755 16 COG4324 COG4324, Predicted aminopeptidase General function prediction only 42523601 Pathogen - hypothetical protein Bd2134 1 None None None 42523583 Pathogen - hypothetical protein Bd2115 1 None None None 42525034 Pathogen - hypothetical protein Bd3699 1 None None None 42525119 Common - putative 3-methyladenine DNA glycosylase Bd3793 84 COG2094 Mpg, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 42523097 Pathogen - hypothetical protein Bd1592 1 None None None 42523773 Common recG ATP-dependent DNA helicase RecG Bd2324 238 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 42522902 Common - Pseudouridine synthase Rlu family protein Bd1383 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 42524771 Common - ABC-type organic solvent resistance transport system ATP-binding protein Bd3412 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 42524628 Common - hypothetical protein Bd3252 11 None None None 42522179 Common - two component sensor histidine kinase Bd0584 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42522545 Pathogen - hypothetical protein Bd0983 1 COG4371 COG4371, Predicted membrane protein Function unknown 42523737 Common - hypothetical protein Bd2283 43 COG1863 MnhE, Multisubunit Na+/H+ antiporter, MnhE subunit Inorganic ion transport and metabolism 42523549 Common - hypothetical protein Bd2077 2 None None None 42524548 Common - hypothetical protein Bd3165 31 None None None 42521950 Common rhs rhs family protein Bd0328 22 None None None 42525092 Common tig trigger factor Bd3764 215 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 42522030 Common - hypothetical abductin-like protein Bd0416 4 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42523080 Common iucB Aerobactin siderophore biosynthesis protein iucB Bd1575 43 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 42524713 Pathogen - hypothetical protein Bd3347 1 None None None 42523710 Common lig hypothetical protein Bd2252 113 COG3285 COG3285, Predicted eukaryotic-type DNA primase DNA replication, recombination, and repair 42522507 Pathogen - 30S ribosomal protein S18 Bd0940 1 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 42524280 Pathogen - hypothetical protein Bd2873 1 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 42524490 Common - putative transcriptional regulator Bd3101 21 COG1406 COG1406, Predicted inhibitor of MCP methylation, homolog of CheC Cell motility and secretion 42525086 Pathogen - hypothetical protein Bd3758 1 None None None 42522967 Common pvcA pyoverdine biosynthesis protein PvcA Bd1454 11 COG3207 DIT1, Pyoverdine/dityrosine biosynthesis protein Secondary metabolites biosynthesis, transport, and catabolism 42524356 Common adk adenylate kinase Bd2954 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 42525153 Common pilF hypothetical protein Bd3829 105 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 42522283 Pathogen - putative actin-binding protein Bd0697 1 None None None 42522527 Pathogen - hypothetical protein Bd0962 1 None None None 42523244 Common nolG NolG efflux transporter Bd1751 180 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 42521957 Common - Acetyltransferase Bd0335 18 COG2153 ElaA, Predicted acyltransferase General function prediction only 42523176 Common - probable UDP-glucose 4-epimerase Bd1678 235 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42521737 Common - putative cytochrome b Bd0092 45 COG3658 COG3658, Cytochrome b Energy production and conversion 42522817 Common - hypothetical protein Bd1294 2 COG3093 VapI, Plasmid maintenance system antidote protein General function prediction only 42522251 Common lipA similar to lipase LipA Bd0664 126 COG0657 Aes, Esterase/lipase Lipid metabolism 42524362 Common rplF 50S ribosomal protein L6 Bd2962 231 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 42525211 Common nuoJ NADH dehydrogenase I chain J Bd3890 159 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 42525226 Common parA Partition protein, ParA homolog Bd3906 230 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 42522786 Pathogen - hypothetical protein Bd1261 1 None None None 42524848 Common aroA EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase), EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Bd3495 227 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 42521870 Common atoE short-chain fatty acids transporter Bd0245 39 COG2031 AtoE, Short chain fatty acids transporter Lipid metabolism 42524373 Common - probable 50S ribosomal protein L23 Bd2974 187 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 42524785 Common ycjI putative carboxypeptidase Bd3426 32 COG2866 COG2866, Predicted carboxypeptidase Amino acid transport and metabolism 42523639 Common fpg hypothetical protein Bd2176 181 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 42522101 Pathogen - putative outer membrane protein Bd0494 2 None None None 42524965 Common - Aminopeptidase Bd3622 55 COG2234 Iap, Predicted aminopeptidases General function prediction only 42522711 Pathogen - hypothetical protein Bd1171 1 None None None 42524469 Common - putative 2'-5' RNA ligase Bd3078 101 COG1514 LigT, 2'-5' RNA ligase Translation, ribosomal structure and biogenesis 42523388 Pathogen - hypothetical protein Bd1909 1 COG3728 XtmA, Phage terminase, small subunit DNA replication, recombination, and repair 42522037 Common vacB ribonuclease R Bd0423 192 COG0557 VacB, Exoribonuclease R Transcription 42522266 Pathogen - hypothetical protein Bd0679 1 None None None 42521834 Pathogen - hypothetical protein Bd0204 1 None None None 42524126 Common - putative amidase Bd2708 220 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 42524334 Pathogen - hypothetical protein Bd2929 1 None None None 42523855 Common dcd deoxycytidine triphosphate deaminase Bd2411 75 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 42522333 Pathogen - hypothetical protein Bd0750 1 None None None 161611324 Common - hypothetical protein Bd1098 176 COG1327 COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Transcription 42521683 Common - Trypsin Bd0035 26 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42523911 Common alaDH hypothetical protein Bd2478 167 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 42524077 Pathogen - hypothetical protein Bd2658 1 None None None 42525021 Common - hypothetical protein Bd3684 107 COG1741 COG1741, Pirin-related protein General function prediction only 42522449 Pathogen - hypothetical protein Bd0878 1 None None None 42523316 Common hflX GTP-binding protein HflX Bd1831 226 COG2262 HflX, GTPases General function prediction only 42525185 Pathogen - hypothetical protein Bd3864 1 None None None 42522615 Common hyuA hydantoin utilization protein Bd1060 4 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 42523330 Pathogen - hypothetical protein Bd1846 1 None None None 42523190 Common capE capsular polysaccharide synthesis enzyme Cap8E Bd1693 196 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42524953 Common - putative aminopeptidase Bd3609 65 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42523928 Common - hypothetical protein Bd2499 16 None None None 42524390 Common tuf elongation factor Tu Bd2994 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 42525068 Pathogen - hypothetical protein Bd3738 1 None None None 42521757 Pathogen - hypothetical protein Bd0118 1 None None None 42523908 Common - putative competence protein Bd2475 6 COG0658 ComEC, Predicted membrane metal-binding protein General function prediction only 42525053 Pathogen - hypothetical protein Bd3721 1 None None None 42524573 Common ftsQ cell division protein Bd3191 5 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 42524778 Common gid tRNA (uracil-5-)-methyltransferase Gid Bd3419 129 COG1206 Gid, NAD(FAD)-utilizing enzyme possibly involved in translation Translation, ribosomal structure and biogenesis 42525032 Common hsdM type I restriction enzyme M protein Bd3696 160 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 42521760 Common - chemotaxis protein Bd0121 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42522225 Common - hypothetical protein Bd0635 37 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 42523973 Common - hypothetical protein Bd2548 60 None None None 42521949 Common - hypothetical protein Bd0327 162 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 42522680 Common mrp mrp protein Bd1134 229 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 42524486 Pathogen - hypothetical protein Bd3097 1 None None None 42523168 Pathogen - hypothetical protein Bd1668 1 None None None 42522798 Common - hypothetical protein Bd1274 9 None None None 42522078 Common tadC Flp pilus assembly protein TadC Bd0470 92 COG2064 TadC, Flp pilus assembly protein TadC Cell motility and secretion / Intracellular trafficking and secretion 42524995 Common - hypothetical protein Bd3654 41 COG3607 COG3607, Predicted lactoylglutathione lyase General function prediction only 42524980 Common - ABC transporter ATP-binding protein Bd3637 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42522586 Common lmbP galactokinase Bd1027 34 COG2605 COG2605, Predicted kinase related to galactokinase and mevalonate kinase General function prediction only 42524991 Common - two-component hybrid sensor and regulator Bd3650 223 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 42523694 Common tgt queuine tRNA-ribosyltransferase Bd2236 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 42524172 Common - hypothetical protein Bd2760 145 COG0795 COG0795, Predicted permeases General function prediction only 42524897 Pathogen - hypothetical protein Bd3545 1 None None None 42524301 Common - putative metal-dependent hydrolase Bd2896 86 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 42523948 Common pepN hypothetical protein Bd2521 160 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 42524505 Pathogen - hypothetical protein Bd3118 1 None None None 42522204 Common fliS flagellar protein FliS Bd0611 67 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 42525161 Common - hypothetical protein Bd3838 5 COG4911 COG4911, Uncharacterized conserved protein Function unknown 42523809 Pathogen - hypothetical protein Bd2363 1 None None None 42524262 Common - putative ABC amino acid transporter solute binding protein Bd2855 37 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42521936 Common - hypothetical protein Bd0314 7 None None None 42523456 Common - hypothetical protein Bd1979 13 None None None 42523476 Pathogen - hypothetical protein Bd2000 1 None None None 42522516 Pathogen - hypothetical protein Bd0949 1 None None None 42522760 Common lamB maltoporin precursor Bd1230 26 COG4580 LamB, Maltoporin (phage lambda and maltose receptor) Carbohydrate transport and metabolism 42523391 Pathogen - hypothetical protein Bd1913 1 None None None 42524223 Common adh putative alcohol dehydrogenase I Bd2813 213 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 42524753 Common ragA two component response regulator Bd3394 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42522948 Common - Serine protease, subtilase family Bd1432 126 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42523937 Common - transmembrane protein Bd2510 28 COG3759 COG3759, Predicted membrane protein Function unknown 42521841 Pathogen - hypothetical protein Bd0213 1 None None None 42522529 Common topA DNA topoisomerase I Bd0964 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 42521692 Pathogen - hypothetical protein Bd0044 1 None None None 42521906 Common - putative carboxylesterase Bd0283 94 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42522845 Pathogen - hypothetical protein Bd1324 1 None None None 42521691 Pathogen - hypothetical protein Bd0043 1 None None None 42524949 Common - hypothetical protein Bd3605 5 COG3863 COG3863, Uncharacterized distant relative of cell wall-associated hydrolases Function unknown 42524197 Pathogen - hypothetical protein Bd2787 1 None None None 42522867 Common - putative cation-transporting ATPase Bd1348 6 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 42523048 Common - putative protease Bd1541 20 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42521944 Common dadA D-amino acid dehydrogenase Bd0322 150 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 42525177 Common dra hypothetical protein Bd3854 138 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 42522410 Common aglR Adventurous gliding motility protein R Bd0836 143 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 42524049 Pathogen - hypothetical protein Bd2629 1 None None None 42522918 Pathogen - hypothetical protein Bd1400 1 None None None 42523579 Common - hypothetical protein Bd2110 111 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 42523760 Pathogen - hypothetical protein Bd2309 1 None None None 42523286 Common nolG NolG efflux transporter Bd1798 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 42522836 Common - hypothetical protein Bd1315 93 COG2947 COG2947, Uncharacterized conserved protein Function unknown 42522767 Common - probable amino-acid ABC transporter Bd1237 5 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42522951 Common - putative NAD(FAD)-dependent dehydrogenase Bd1435 224 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 42524296 Common - hypothetical protein Bd2891 29 COG4733 COG4733, Phage-related protein, tail component Function unknown 42522603 Pathogen - hypothetical protein Bd1046 1 None None None 42522743 Common - hypothetical protein Bd1209 43 COG3762 COG3762, Predicted membrane protein Function unknown 42522911 Pathogen - hypothetical protein Bd1393 1 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 42521724 Pathogen - hypothetical protein Bd0078 1 None None None 42524759 Common fliJ flagellar basal body formation protein fliJ Bd3400 4 COG2882 FliJ, Flagellar biosynthesis chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 42524056 Common yicP cryptic adenine deaminase Bd2636 69 COG1001 AdeC, Adenine deaminase Nucleotide transport and metabolism 42521879 Common uvrC excinuclease ABC subunit C Bd0254 221 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 42524051 Pathogen - hypothetical protein Bd2631 1 None None None 42522501 Pathogen - hypothetical protein Bd0933 1 None None None 42525080 Common - hypothetical protein Bd3752 4 None None None 42523617 Common fumB fumarate hydratase, class I Bd2151 147 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 42522392 Common - D-alanyl-D-alanine carboxypeptidase Bd0816 9 COG2027 DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) Cell envelope biogenesis, outer membrane 42522308 Pathogen - hypothetical protein Bd0723 1 None None None 42522310 Pathogen - hypothetical protein Bd0725 1 None None None 42522976 Common - hypothetical protein Bd1463 4 None None None 42523970 Common - subtilisin like serine protease Bd2545 134 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42524188 Pathogen - hypothetical protein Bd2778 1 None None None 42523307 Common - hypothetical protein Bd1821 2 COG1714 COG1714, Predicted membrane protein/domain Function unknown 42524139 Common - probable HspC2 heat shock protein Bd2722 172 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 42525094 Common - hypothetical protein Bd3766 189 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 42524445 Pathogen - hypothetical protein Bd3053 1 None None None 42524151 Pathogen - hypothetical protein Bd2736 1 None None None 42521891 Common glnA hypothetical protein Bd0267 230 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 42523620 Common - two-component response regulator homolog Bd2154 31 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 42523032 Common ppx hypothetical protein Bd1525 80 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 42523909 Common comA predicted hydrolase Bd2476 29 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 42524724 Common - probable transcriptional regulatory protein zraR Bd3360 204 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42524075 Common - hypothetical protein Bd2656 2 None None None 42525136 Pathogen - hypothetical protein Bd3812 1 None None None 42524393 Pathogen - hypothetical protein Bd2997 1 None None None 42524459 Pathogen - hypothetical protein Bd3067 1 None None None 42521855 Common yhbH hypothetical protein Bd0229 71 COG2718 COG2718, Uncharacterized conserved protein Function unknown 42523597 Common prfC hypothetical protein Bd2130 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 42523677 Common yuxK hypothetical protein Bd2219 31 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 42521951 Common - putative steroid delta-isomerase domain protein Bd0329 10 COG4538 COG4538, Uncharacterized conserved protein Function unknown 42524768 Common - hypothetical protein Bd3409 18 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 42523395 Common pgsA hypothetical protein Bd1917 205 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 42523102 Common gspD general secretion pathway protein D Bd1597 142 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 42525043 Pathogen - hypothetical protein Bd3708 1 None None None 42522245 Common - glutathione-regulated K+ efflux antiporter Bd0658 210 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 42524884 Common - hypothetical protein Bd3532 45 COG2703 COG2703, Hemerythrin Inorganic ion transport and metabolism 42522438 Common pilP fimbrial assembly protein Bd0866 7 COG3168 PilP, Tfp pilus assembly protein PilP Cell motility and secretion / Intracellular trafficking and secretion 42523037 Common udk uridine kinase Bd1530 94 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 42521979 Pathogen - hypothetical protein Bd0362 1 None None None 42524741 Pathogen - hypothetical protein Bd3380 1 None None None 42523270 Common - hypothetical protein Bd1782 68 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42524069 Common - hypothetical protein Bd2649 3 None None None 42522888 Pathogen - hypothetical protein Bd1369 1 None None None 42522719 Pathogen - hypothetical protein Bd1180 1 None None None 42524259 Common - putative secreted protein Bd2851 8 None None None 42524253 Common - putative capsule biosynthesis protein Bd2845 64 COG2843 PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) Cell envelope biogenesis, outer membrane 42523728 Common - hypothetical protein Bd2271 23 COG4389 COG4389, Site-specific recombinase DNA replication, recombination, and repair 42522495 Common - putative RNA methylase Bd0927 3 COG2850 COG2850, Uncharacterized conserved protein Function unknown 42523623 Common - hypothetical protein Bd2157 7 None None None 42524060 Common cyaK adenylate cyclase Bd2640 90 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 42523799 Pathogen - hypothetical protein Bd2353 1 None None None 42522150 Pathogen - hypothetical protein Bd0551 1 None None None 42523918 Common ruvA Holliday junction DNA helicase RuvA Bd2488 210 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 42523742 Common - putative haloacid dehalogenase-like hydrolase Bd2289 72 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 42522728 Common - putative hydrolase Bd1192 81 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42522689 Common glyS glycyl-tRNA synthetase Bd1147 86 COG0423 GRS1, Glycyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 42524586 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase Bd3205 212 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 42523864 Pathogen - hypothetical protein Bd2423 1 None None None 42523237 Pathogen - hypothetical protein Bd1743 1 COG3889 COG3889, Predicted solute binding protein General function prediction only 42524387 Common rplK 50S ribosomal protein L11 Bd2991 246 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 42524864 Common lexA transcriptional repressor of the SOS regulon Bd3511 171 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 42522429 Common - hypothetical protein Bd0857 3 None None None 42521784 Pathogen - hypothetical protein Bd0147 1 None None None 42522008 Common ace pyruvate dehydrogenase E1 component Bd0394 108 COG2609 AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component Energy production and conversion 42521781 Common motA chemotaxis motA protein Bd0144 101 COG1291 MotA, Flagellar motor component Cell motility and secretion 42525219 Common atpG ATP synthase gamma chain Bd3898 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 42523446 Common fabG oxidoreductase Bd1969 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 42524042 Common trg methyl-accepting chemotaxis protein Bd2622 119 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42524422 Common - hypothetical protein Bd3027 12 None None None 42524859 Pathogen - hypothetical protein Bd3506 1 None None None 42521700 Common murD hypothetical protein Bd0052 208 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 42524102 Pathogen - hypothetical protein Bd2684 1 None None None 42522574 Common ppx hypothetical protein Bd1014 183 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 42524643 Pathogen - hypothetical protein Bd3269 1 None None None 42523956 Common - hypothetical protein Bd2530 5 None None None 42521865 Common - hypothetical protein Bd0240 153 COG1610 COG1610, Uncharacterized conserved protein Function unknown 42522850 Pathogen - hypothetical protein Bd1329 1 None None None 42523958 Common - hypothetical protein Bd2532 5 None None None 42522872 Common - short chain dehydrogenase Bd1353 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 42523269 Pathogen - hypothetical protein Bd1781 1 None None None 42525214 Common - transcription-repair coupling factor Bd3893 221 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 42522464 Common - hypothetical protein Bd0894 12 COG0628 PerM, Predicted permease General function prediction only 42523886 Common - Maf-like protein Bd2448 181 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 42522351 Common - Tyrosine specific protein phosphatase Bd0771 50 COG2365 COG2365, Protein tyrosine/serine phosphatase Signal transduction mechanisms 42523846 Common - two-component response regulator Bd2402 104 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42523083 Common - membrane protein Bd1578 49 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 42523571 Pathogen - hypothetical protein Bd2101 1 None None None 42523920 Common - hypothetical protein Bd2490 12 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 42522344 Common phoH PhoH-like ATPase Bd0761 199 COG1875 COG1875, Predicted ATPase related to phosphate starvation-inducible protein PhoH Signal transduction mechanisms 42522131 Common lysC aspartate kinase Bd0528 234 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 42524523 Pathogen lolE ABC-type transporter involved in lipoprotein release Bd3138 1 None None None 42523081 Common iucA Aerobactin siderophore biosynthesis protein iucA Bd1576 48 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 42525143 Common - hypothetical protein Bd3819 9 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 42524966 Common - Mg-protoporphyrin IX monomethyl ester oxidative cyclase Bd3623 80 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 42524436 Pathogen - hypothetical protein Bd3043 1 None None None 42524205 Pathogen - hypothetical protein Bd2795 1 None None None 42522814 Common - hypothetical protein Bd1291 6 None None None 42523461 Common nrdA ribonucleoside-diphosphate reductase alpha chain Bd1984 222 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 42523499 Pathogen - hypothetical protein Bd2024 1 None None None 42523302 Common eriC chloride channel protein Bd1816 134 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 42522012 Common - cell wall-binding protein associated metalloendopeptidase Bd0398 194 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 42524601 Common - hypothetical protein Bd3222 74 COG2119 COG2119, Predicted membrane protein Function unknown 42523146 Pathogen - hypothetical protein Bd1644 1 None None None 42523277 Pathogen - hypothetical protein Bd1789 1 None None None 42525192 Common grpE GrpE protein Bd3871 232 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 42523661 Pathogen - hypothetical protein Bd2199 1 None None None 42523443 Common - hypothetical protein Bd1966 36 COG3528 COG3528, Uncharacterized protein conserved in bacteria Function unknown 42522290 Common - cell wall surface anchor family protein Bd0704 7 None None None 42522625 Common - integral membrane protein Bd1071 149 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 42524408 Common - hypothetical protein Bd3012 9 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 42522166 Common - HIT family hydrolase Bd0570 110 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 42523797 Pathogen - hypothetical protein Bd2351 1 None None None 42521657 Pathogen - hypothetical protein Bd0007 1 None None None 42523008 Common - hypothetical protein Bd1501 10 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 42523208 Common - cell wall surface anchor family protein Bd1712 79 COG1579 COG1579, Zn-ribbon protein, possibly nucleic acid-binding General function prediction only 42524516 Common - probable short-chain dehydrogenase Bd3130 236 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 42523347 Common feoB ferrous iron transport protein B Bd1867 153 COG0370 FeoB, Fe2+ transport system protein B Inorganic ion transport and metabolism 42523965 Common - amine oxidase, flavin-containing Bd2540 24 COG1231 COG1231, Monoamine oxidase Amino acid transport and metabolism 42524670 Pathogen - hypothetical protein Bd3298 1 None None None 42523702 Pathogen - hypothetical protein Bd2244 1 None None None 42524667 Common folD methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase Bd3295 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 42522621 Common rpsA 30S ribosomal protein S1 Bd1066 224 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 42523879 Common - cell wall surface anchor family protein Bd2439 26 None None None 42524697 Common fliM flagellar motor switch protein FliM Bd3328 109 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 42522329 Pathogen - hypothetical protein Bd0746 1 None None None 42521931 Common - hypothetical protein Bd0308 20 COG4312 COG4312, Uncharacterized protein conserved in bacteria Function unknown 42523263 Common - lipoprotein releasing system transmembrane protein Bd1774 147 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 42524928 Common mccB 3-methylcrotonoyl-CoA carboxylase beta subunit Bd3580 143 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 42524903 Pathogen - hypothetical protein Bd3552 1 None None None 42525129 Common - ABC-type organic solvent resistance transport system substrate-bindin protein Bd3803 18 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 42525180 Common - alkaline serine protease, subtilase family Bd3857 141 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42522419 Pathogen - TPR-domain containing protein Bd0847 1 None None None 42521711 Pathogen - hypothetical protein Bd0064 1 None None None 42521919 Common - putative lipoprotein Bd0296 76 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 42525223 Common atpF ATP synthase B chain Bd3903 74 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 42523123 Common - D-tyrosyl-tRNA deacylase Bd1619 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 42521813 Common - TonB-like protein Bd0180 4 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42522389 Pathogen - hypothetical protein Bd0813 1 None None None 42523823 Common aglR Adventurous gliding motility protein R Bd2377 140 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 42521769 Common - hypothetical protein Bd0132 185 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 42523335 Common - methylmalonyl-CoA mutase Bd1853 110 COG1884 Sbm, Methylmalonyl-CoA mutase, N-terminal domain/subunit Lipid metabolism 42523535 Pathogen - hypothetical protein Bd2062 1 None None None 42525044 Common - Dipeptidyl aminopeptidase/acylaminoacyl-peptidase Bd3709 3 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 42522560 Common tolC outer membrane efflux protein Bd0999 15 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 42522289 Pathogen - hypothetical protein Bd0703 1 None None None 42522147 Pathogen - hypothetical protein Bd0547 1 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 42524615 Common spb1 Serine protease precursor Bd3238 129 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 42523405 Common - putative cell cycle protein Bd1927 203 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 42523431 Common mutS DNA mismatch repair protein Bd1954 202 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 42524686 Pathogen - hypothetical protein Bd3316 1 None None None 42522451 Common - putative periplasmic protein cpxP Bd0880 8 COG3678 CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism 42524592 Common - putative beta-lactamase Bd3212 38 COG2602 COG2602, Beta-lactamase class D Defense mechanisms 42524030 Pathogen ccoS cytochrome oxidase maturation protein, cbb3-type Bd2610 1 COG3197 FixS, Uncharacterized protein, possibly involved in nitrogen fixation Inorganic ion transport and metabolism 42523151 Common pepC putative aminopeptidase C Bd1649 14 COG3579 PepC, Aminopeptidase C Amino acid transport and metabolism 42524414 Pathogen - hypothetical protein Bd3019 1 None None None 42525118 Common - hypothetical protein Bd3792 176 COG1496 COG1496, Uncharacterized conserved protein Function unknown 42523822 Common - hypothetical protein Bd2376 4 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 42523412 Common - putative endonuclease Bd1934 36 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 42524802 Common hemA hypothetical protein Bd3446 3 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 42522506 Pathogen - hypothetical protein Bd0939 1 None None None 42523134 Common - hypothetical protein Bd1631 29 COG4912 COG4912, Predicted DNA alkylation repair enzyme DNA replication, recombination, and repair 42523138 Common gidB Methyltransferase gidB Bd1636 163 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 42523460 Common nrdB ribonucleotide-diphosphate reductase small chain Bd1983 132 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 42524531 Pathogen - hypothetical protein Bd3146 1 None None None 42521988 Common - putative transcriptional regulator PhoB-like Bd0374 222 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42522052 Common rbsD ABC-type ribose transporter, permease protein Bd0443 140 COG4603 COG4603, ABC-type uncharacterized transport system, permease component General function prediction only 42524091 Pathogen - hypothetical protein Bd2673 2 COG4748 COG4748, Uncharacterized conserved protein Function unknown 42524709 Common - putative methyl-accepting chemotaxis protein Bd3341 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42524293 Common grlA hypothetical protein Bd2887 126 COG0278 COG0278, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 42522233 Pathogen - hypothetical protein Bd0644 1 None None None 42524488 Common - hypothetical protein Bd3099 3 None None None 42523636 Common eriC2 voltage-gated chloride channel family protein Bd2173 143 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 42523976 Pathogen - hypothetical protein Bd2552 1 None None None 42521792 Common nifA nitrogen fixation specific regulatory protein NifA Bd0156 173 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 42525077 Common lon ATP-dependent protease LA Bd3749 222 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 42524015 Common - anaerobic ribonucleoside triphosphate reductase Bd2593 67 COG1328 NrdD, Oxygen-sensitive ribonucleoside-triphosphate reductase Nucleotide transport and metabolism 42524714 Pathogen - hypothetical protein Bd3348 1 None None None 42523296 Common - tryptophan 2,3-dioxygenase Bd1810 42 COG3483 TDO2, Tryptophan 2,3-dioxygenase (vermilion) Amino acid transport and metabolism 42523109 Common - putative cytochrome c biogenesis protein Bd1604 12 None None None 42521883 Common prsA peptidyl-prolyl cis-trans isomerase C Bd0258 142 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 42524817 Common pcnB poly(A) polymerase Bd3464 214 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 42524648 Pathogen - hypothetical protein Bd3275 1 None None None 42522343 Pathogen - hypothetical protein Bd0760 1 None None None 42522672 Common mltE putative soluble lytic transglycosylase Bd1124 165 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 42522653 Pathogen - hypothetical protein Bd1104 1 None None None 42522105 Common torS Sensory transduction histidine kinase Bd0499 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42523789 Common - hypothetical protein Bd2343 6 None None None 42522441 Common - recombination factor protein RarA Bd0869 238 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 42523124 Common - acetyl-CoA hydrolase/transferase family protein Bd1620 96 COG0427 ACH1, Acetyl-CoA hydrolase Energy production and conversion 42523893 Common mreC rod shape-determining protein MreC Bd2457 154 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 42523931 Common mcp MCP methyl chemotaxis protein Bd2503 157 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42524679 Pathogen - hypothetical protein Bd3308 1 None None None 42522465 Common - hypothetical protein Bd0895 19 None None None 42522808 Pathogen - hypothetical protein Bd1284 1 None None None 42523322 Common ordL oxidoreductase Bd1837 124 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 42523647 Common - hypothetical protein Bd2185 11 None None None 42523368 Common - hypothetical protein Bd1888 9 None None None 42521778 Common - penicillin-binding protein Bd0141 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 42523780 Common - hypothetical protein Bd2332 25 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42521971 Pathogen - hypothetical protein Bd0351 1 None None None 42522674 Common mcp putative methyl-accepting chemotaxis protein Bd1126 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42522064 Common - putative lactoylglutathione lyase Bd0456 64 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 42522823 Common - metallo-beta-lactamase superfamily protein Bd1301 209 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 42524733 Common - hypothetical protein Bd3370 14 None None None 42521741 Pathogen - hypothetical protein Bd0096 1 None None None 42523544 Common - hypothetical protein Bd2072 3 None None None 42522388 Common pt phosphotyrosine protein phosphatase Bd0812 134 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 42524090 Pathogen - hypothetical protein Bd2672 1 None None None 42525204 Common - putative cysteine protease (Transglutaminase-like) Bd3883 86 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 42524933 Common - hypothetical protein Bd3586 32 COG3021 COG3021, Uncharacterized protein conserved in bacteria Function unknown 42524025 Common - hypothetical protein Bd2605 21 COG4309 COG4309, Uncharacterized conserved protein Function unknown 42524984 Pathogen - hypothetical protein Bd3642 1 None None None 42524371 Common rpsS 30S ribosomal protein S19 Bd2972 245 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 42521745 Pathogen - hypothetical protein Bd0101 1 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 42521661 Pathogen - hypothetical protein Bd0011 1 None None None 42522249 Pathogen - hypothetical protein Bd0662 1 None None None 42523630 Common ymdA hydrolase (HAD superfamily) Bd2166 76 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 42524144 Common gpmA phosphoglycerate mutase Bd2727 166 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 42524530 Pathogen - hypothetical protein Bd3145 1 None None None 42524719 Pathogen - hypothetical protein Bd3355 1 None None None 42525154 Common - hypothetical protein Bd3830 75 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 42521866 Common dnaG DNA primase Bd0241 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 42522350 Common - hypothetical protein Bd0768 2 None None None 42524483 Pathogen - hypothetical protein Bd3094 1 None None None 42525070 Pathogen - hypothetical protein Bd3740 1 None None None 42524739 Pathogen - hypothetical protein Bd3376 1 None None None 42522646 Pathogen - hypothetical protein Bd1096 1 None None None 42522691 Pathogen - hypothetical protein Bd1149 1 None None None 42522022 Common flaA flagellin Bd0408 120 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 42523917 Common ruvB Holliday junction DNA helicase B Bd2487 238 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 42523022 Pathogen - hypothetical protein Bd1515 1 None None None 42524348 Common - hypothetical protein Bd2946 10 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 42523538 Common - hypothetical protein Bd2065 27 COG4549 COG4549, Uncharacterized protein conserved in bacteria Function unknown 42522112 Common - putative short-chain dehydrogenase/reductase Bd0506 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 42523280 Common - hypothetical protein Bd1792 2 None None None 42524786 Common - predicted hydrolase of the HAD superfamily Bd3427 20 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 42524878 Common - hypothetical protein Bd3526 14 None None None 42522481 Common yeeZ putative enzyme of sugar metabolism Bd0911 44 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42523990 Common - pseudoazurin Bd2567 24 COG3794 PetE, Plastocyanin Energy production and conversion 42524165 Common hutU urocanate hydratase Bd2751 97 COG2987 HutU, Urocanate hydratase Amino acid transport and metabolism 42522892 Pathogen - hypothetical protein Bd1373 1 None None None 42524416 Common motA motility protein A Bd3021 102 COG1291 MotA, Flagellar motor component Cell motility and secretion 42523016 Common pilB type IV pilus biogenesis protein PilB Bd1509 209 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 42522609 Pathogen - hypothetical protein Bd1053 1 None None None 42522785 Pathogen - hypothetical protein Bd1260 1 None None None 42524386 Common rplA 50S ribosomal protein L1 Bd2990 238 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 42525103 Common priA similar to primosomal replication factor Y Bd3775 213 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 42523001 Common - hypothetical protein Bd1493 163 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 42523966 Common - SM-20-related protein Bd2541 30 COG3751 EGL-9, Predicted proline hydroxylase Posttranslational modification, protein turnover, chaperones 42522364 Pathogen - hypothetical protein Bd0785 1 None None None 42522966 Common oxyR transcriptional regulator, LysR family Bd1453 179 COG0583 LysR, Transcriptional regulator Transcription 42523057 Common rpsO 30S ribosomal protein S15 Bd1550 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 42525102 Pathogen - hypothetical protein Bd3774 1 None None None 42522563 Common soxR redox-sensing activator of soxS Bd1002 89 COG0789 SoxR, Predicted transcriptional regulators Transcription 42522912 Common dbpA ATP-dependent RNA helicase DbpA Bd1394 244 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 42521758 Pathogen - hypothetical protein Bd0119 1 None None None 42525054 Common icdA isocitrate dehydrogenase Bd3723 62 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 42524830 Common - hypothetical protein Bd3477 9 None None None 42523356 Common - ABC-type multidrug transport system, ATPase component Bd1876 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42523715 Pathogen - hypothetical protein Bd2258 1 None None None 42524391 Common - RNA methyltransferase, TrmH family, group Bd2995 212 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 42521929 Common - carboxypeptidase Bd0306 7 COG3608 COG3608, Predicted deacylase General function prediction only 42523375 Pathogen - hypothetical protein Bd1896 1 None None None 42522925 Common - outer membrane protein Bd1408 22 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 42523600 Common - hypothetical protein Bd2133 63 None None None 42521915 Common - hypothetical protein Bd0292 4 None None None 42523154 Common - phosphoglycerate mutase Bd1653 34 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 42522975 Common aspC Aspartate aminotransferase, putative Bd1462 155 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 42522295 Common macB Macrolide specific ABC-type transporter, ATP-binding protein Bd0709 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 42522597 Common tmk hypothetical protein Bd1040 224 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 42524644 Common - methylase for 50S ribosomal subunit protein L11 Bd3270 177 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 42522252 Common - choloylglycine hydrolase Bd0665 53 COG3049 COG3049, Penicillin V acylase and related amidases Cell envelope biogenesis, outer membrane 42522996 Common - Membrane protein containing HD superfamily hydrolase domain Bd1486 56 COG1480 COG1480, Predicted membrane-associated HD superfamily hydrolase General function prediction only 42524281 Pathogen - hypothetical protein Bd2874 1 None None None 42525089 Pathogen - hypothetical protein Bd3761 1 None None None 42522801 Common mutS DNA mismatch repair protein Bd1277 199 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 42523519 Pathogen - hypothetical protein Bd2046 2 None None None 42524006 Common - two-component hybrid histidine kinase Bd2584 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42524333 Pathogen - hypothetical protein Bd2928 1 None None None 42522722 Pathogen - hypothetical protein Bd1184 1 None None None 42525022 Common yhhW hypothetical protein Bd3685 42 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 42523221 Common pys phytoene synthase Bd1725 105 COG1562 ERG9, Phytoene/squalene synthetase Lipid metabolism 42522393 Pathogen - hypothetical protein Bd0817 1 None None None 42525015 Common ydeA hypothetical protein Bd3678 39 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 42521839 Pathogen - hypothetical protein Bd0210 1 None None None 42524497 Common hrpB helicase Bd3108 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 42524633 Common - hypothetical protein Bd3258 12 COG3248 Tsx, Nucleoside-binding outer membrane protein Cell envelope biogenesis, outer membrane 42522552 Pathogen - hypothetical protein Bd0991 1 None None None 42522704 Common - transcriptional regulator Bd1163 48 COG1959 COG1959, Predicted transcriptional regulator Transcription 42524363 Common rpsH 30S ribosomal protein S8 Bd2963 241 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 42524981 Common - hypothetical protein Bd3638 39 COG3148 COG3148, Uncharacterized conserved protein Function unknown 42523800 Common - THIF family protein Bd2354 216 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 42522426 Common lepB hypothetical protein Bd0854 208 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 42522190 Common - two component sensor histidine kinase Bd0596 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42522284 Common - hypothetical protein Bd0698 3 None None None 42522538 Common - putative helicase Bd0976 8 None None None 42524729 Common - Conserved two-component system, regulatory protein Bd3366 210 COG4567 COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Signal transduction mechanisms / Transcription 42524265 Common - hypothetical metallo hydrolase Bd2858 117 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 42524607 Common - transcriptional regulator, LysR family Bd3229 75 COG0583 LysR, Transcriptional regulator Transcription 42524589 Common - probable cyclic nucleotide binding protein Bd3208 101 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42524003 Common - hypothetical protein Bd2581 3 None None None 42523711 Common - hypothetical protein Bd2254 63 COG1273 COG1273, Uncharacterized conserved protein Function unknown 42523191 Common capF capsular polysaccharide synthesis enzyme Cap5F Bd1694 40 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42525128 Pathogen - hypothetical protein Bd3802 1 None None None 42523560 Common - hypothetical protein Bd2088 26 None None None 42523609 Common - two-component sensor histidine kinase Bd2142 186 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42523486 Common acp hypothetical protein Bd2011 211 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 42522327 Common rpoE RNA polymerase sigma-E factor Bd0743 174 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 42522746 Common - hypothetical protein Bd1212 97 COG1671 COG1671, Uncharacterized protein conserved in bacteria Function unknown 42522909 Common - putative trypsin Bd1391 25 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 42523902 Common trx thioredoxin Bd2468 234 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 42524233 Common nrfH cytochrome c-type protein Bd2824 49 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 42524312 Pathogen - hypothetical protein Bd2907 1 None None None 42521738 Common - hypothetical protein Bd0093 2 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 42522051 Common rbsC sugar ABC transporter, permease protein Bd0442 108 COG1079 COG1079, Uncharacterized ABC-type transport system, permease component General function prediction only 42523736 Pathogen - putative multisubunit Na+/H+ antiporter Bd2280 1 COG1320 MnhG, Multisubunit Na+/H+ antiporter, MnhG subunit Inorganic ion transport and metabolism 42523242 Common - hypothetical protein Bd1749 3 None None None 42523530 Pathogen - hypothetical protein Bd2057 1 None None None 42523165 Common rfbG CDP-D-glucose-4,6-dehydratase Bd1665 193 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42524214 Pathogen - hypothetical protein Bd2804 1 None None None 42522982 Common tsr methyl accepting chemotaxis protein Bd1469 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 42523245 Pathogen - hypothetical protein Bd1752 1 None None None 42521716 Common hemK HemK protein Bd0070 212 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 42524665 Common - hypothetical protein Bd3293 31 COG4222 COG4222, Uncharacterized protein conserved in bacteria Function unknown 42522038 Common - hypothetical protein Bd0425 2 None None None 42524847 Common aroK shikimate synthase Bd3494 34 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 42523253 Common - hypothetical protein Bd1762 13 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 42525069 Pathogen - hypothetical protein Bd3739 1 None None None 42523115 Common - hypothetical protein Bd1611 21 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 42522710 Pathogen - hypothetical protein Bd1170 1 None None None 42524219 Pathogen - putative signal peptide protein Bd2809 2 None None None 42523215 Common - hypothetical protein Bd1719 5 None None None 161611325 Common asnC asparaginyl-tRNA synthetase Bd1054 240 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 42523329 Common - putative lysophosphatidic acid acyltransferase Bd1844 175 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 42523814 Common - hypothetical protein Bd2368 5 None None None 42525178 Common pdp pyrimidine-nucleoside phosphorylase Bd3855 119 COG0213 DeoA, Thymidine phosphorylase Nucleotide transport and metabolism 42523101 Common - predicted ATPase involved in pili biogenesis, PilB homologs Bd1596 211 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 42524475 Common nuoD NADH dehydrogenase I,D subunit Bd3085 191 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 42524495 Common - hypothetical protein Bd3106 4 COG0546 Gph, Predicted phosphatases General function prediction only 42524656 Common - hypothetical protein Bd3284 23 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42525029 Pathogen - hypothetical protein Bd3693 1 None None None 42521890 Common gcvH glycine cleavage system protein H homologue Bd0266 179 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 42522330 Pathogen - hypothetical protein Bd0747 1 None None None 42524316 Common - hypothetical protein Bd2911 21 COG3247 HdeD, Uncharacterized conserved protein Function unknown 42523061 Pathogen - hypothetical protein Bd1554 1 None None None 42521982 Common pleD two component response regulator Bd0367 219 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 42523511 Pathogen - hypothetical protein Bd2038 1 None None None 42523341 Common psd Phosphatidylserine decarboxylase proenzyme Bd1861 96 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 42522203 Common fliD flagellar hook associated protein Bd0610 100 COG1345 FliD, Flagellar capping protein Cell motility and secretion 42523389 Pathogen - hypothetical protein Bd1910 1 None None None 42524703 Common suhB putative myo-inositol-1(or 4)-monophosphatase Bd3335 207 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 42521679 Common - hypothetical protein Bd0031 28 COG1716 COG1716, FOG: FHA domain Signal transduction mechanisms 42523203 Common fic cell filamentation protein Bd1707 22 COG2184 Fic, Protein involved in cell division Cell division and chromosome partitioning 42524141 Pathogen - hypothetical protein Bd2724 1 COG4970 FimT, Tfp pilus assembly protein FimT Cell motility and secretion / Intracellular trafficking and secretion 42524852 Pathogen - hypothetical protein Bd3499 1 None None None 42524840 Common ubiE ubiquinone/menaquinone biosynthesis methyltransferase Bd3487 209 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 42522359 Pathogen - hypothetical protein Bd0780 1 None None None 42521705 Common gatC glutamyl-tRNA(Gln) amidotransferase (subunit C) Bd0058 135 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 42523023 Common - Phospholipase D family protein Bd1516 137 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 42524413 Common - hypothetical protein Bd3018 3 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 42524690 Common flhA flagella-associated protein Bd3321 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 42523593 Pathogen - hypothetical protein Bd2126 1 None None None 42522831 Common grxC glutaredoxin Bd1310 111 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 42523118 Pathogen - hypothetical protein Bd1614 1 None None None 42522217 Pathogen - hypothetical protein Bd0627 1 None None None 42522443 Pathogen - hypothetical protein Bd0871 1 None None None 42521823 Pathogen - hypothetical protein Bd0191 1 None None None 42522756 Common malK ABC-type maltose transport, ATP binding protein. Bd1225 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 42521687 Common fis site-specific DNA inversion stimulation factor Bd0039 94 COG2901 Fis, Factor for inversion stimulation Fis, transcriptional activator Transcription / DNA replication, recombination, and repair 42523997 Common - phosphoglycerol transferase Bd2574 58 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 42523382 Common fkpA peptidyl-prolyl cis-trans isomerase, FKBP-type Bd1903 147 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 42523759 Common - MFS transporter Bd2308 120 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42524626 Common - hypothetical protein Bd3250 23 None None None 42523452 Common - putative Zn-dependent protease Bd1975 97 COG1994 SpoIVFB, Zn-dependent proteases General function prediction only 42522372 Common eno phosphopyruvate hydratase Bd0796 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 42523776 Pathogen - hypothetical protein Bd2327 1 None None None 42523475 Common - patatin family protein Bd1999 48 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 42522260 Common - hypothetical protein Bd0673 3 None None None 42523179 Common - putative formyltransferase Bd1681 195 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 42521849 Common - putative regulator for granula-associated protein Bd0223 66 COG5394 COG5394, Uncharacterized protein conserved in bacteria Function unknown 42524224 Pathogen - hypothetical protein Bd2814 1 None None None 42523189 Common hisF imidazole glycerol phosphate synthase subunit HisF Bd1692 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 42522339 Pathogen - hypothetical protein Bd0756 1 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 42523553 Common guaB similar to inosine-monophosphate dehydrogenase Bd2081 242 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 42524822 Common cheA chemotaxis protein Bd3469 148 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 42522042 Common - two component response regulator Bd0429 203 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42521937 Common tpx thiol peroxidase Bd0315 95 COG2077 Tpx, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 42523175 Pathogen - hypothetical protein Bd1677 1 COG1634 COG1634, Uncharacterized Rossmann fold enzyme General function prediction only 42524428 Common proS prolyl-tRNA synthetase Bd3033 215 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42523580 Pathogen - probable anti-sigma factor antagonist Bd2111 2 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 42522515 Pathogen - putative Polyketide synthase Bd0948 1 None None None 42523096 Common - General secretion pathway protein G precursor Bd1591 60 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 42521805 Pathogen - hypothetical protein Bd0170 1 None None None 42523774 Common - HD-GYP hydrolase domain containing protein Bd2325 118 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms