Lactobacillus johnsonii NCC 533, complete genome NC_005362 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 42519596 Common - ATP-dependent DNA helicase PcrA LJ1721 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 42519305 Common - Lj928 prophage protein LJ1433 4 None None None 42519080 Common - hypothetical protein LJ1154 68 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 42519185 Common - hypothetical protein LJ1260 128 COG1609 PurR, Transcriptional regulators Transcription 42519121 Common recU Holliday junction-specific endonuclease LJ1196 18 COG3331 PrfA, Penicillin-binding protein-related factor A, putative recombinase General function prediction only 42519634 Nonpathogen - hypothetical protein LJ1758 12 COG4295 COG4295, Uncharacterized protein conserved in bacteria Function unknown 42518916 Common - hypothetical protein LJ0990 92 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 42519236 Nonpathogen - hypothetical protein LJ1312 1 None None None 42518888 Common - rod shape-determining protein MreC LJ0963 124 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 42519573 Common - cation-transporting ATPase LJ1696 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 42519113 Common - formyltetrahydrofolate synthetase LJ1188 89 COG2759 MIS1, Formyltetrahydrofolate synthetase Nucleotide transport and metabolism 42518524 Common - hypothetical protein LJ0429 168 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 42518794 Common clpP ATP-dependent Clp protease proteolytic subunit LJ0869 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 42518219 Nonpathogen - hypothetical protein LJ0133 1 None None None 42518292 Common - veg protein LJ0206 19 COG4466 Veg, Uncharacterized protein conserved in bacteria Function unknown 42518169 Common - hypothetical protein LJ0083 26 COG1896 COG1896, Predicted hydrolases of HD superfamily General function prediction only 42519222 Common - hypothetical protein LJ1297 3 COG1396 HipB, Predicted transcriptional regulators Transcription 42518849 Common pgi glucose-6-phosphate isomerase LJ0924 181 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 42518517 Common - hypothetical protein LJ0422 217 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 42519719 Common - phosphoglycerate mutase LJ0606 142 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 42519899 Common - hypothetical protein LJ1851 125 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 42518308 Common - DNA-directed RNA polymerase subunit delta LJ0223 14 COG3343 RpoE, DNA-directed RNA polymerase, delta subunit Transcription 42519673 Common - hypothetical protein LJ0652 5 None None None 42518505 Common rplK 50S ribosomal protein L11 LJ0410 244 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 42518262 Common - aminopeptidase C LJ0176 17 COG3579 PepC, Aminopeptidase C Amino acid transport and metabolism 42518972 Common - hypothetical protein LJ1047 25 COG4928 COG4928, Predicted P-loop ATPase General function prediction only 42518194 Common - D-alanine-D-alanine ligase LJ0108 210 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 42518933 Common - hypothetical protein LJ1007 158 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 42518804 Common - hypothetical protein LJ0879 31 COG0456 RimI, Acetyltransferases General function prediction only 42519192 Common - transketolase LJ1267 228 COG3958 COG3958, Transketolase, C-terminal subunit Carbohydrate transport and metabolism 42519474 Common - peptide chain release factor 3 LJ1600 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 42518929 Common - hypothetical protein LJ1003 120 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 42519303 Nonpathogen - Lj928 prophage protein LJ1431 1 None None None 42519146 Common - hypothetical protein LJ1221 12 COG0645 COG0645, Predicted kinase General function prediction only 42519336 Nonpathogen - Lj928 prophage protein LJ1464 2 None None None 42519753 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, probable fructose specific LJ0572 145 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 42519003 Common - DNA polymerase III alpha subunit LJ1077 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 42518617 Common - hypothetical protein LJ0695 9 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 42518312 Common - xanthine phosphoribosyltransferase LJ0227 25 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 42519345 Common - amino acid transporter LJ1473 29 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42519091 Nonpathogen - hypothetical protein LJ1165 1 None None None 42519682 Common - hypothetical protein LJ0643 12 COG3201 PnuC, Nicotinamide mononucleotide transporter Coenzyme metabolism 42519388 Common - signal recognition particle protein LJ1516 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 42518672 Common - ABC transporter ATPase and permease components LJ0750 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42518724 Common - hypothetical protein LJ0799 87 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 42519874 Common - deoxyguanosine kinase LJ1825 40 COG1428 COG1428, Deoxynucleoside kinases Nucleotide transport and metabolism 42519376 Common - ABC transporter ATPase and permease components LJ1504 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42518811 Common - hypothetical protein LJ0886 142 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 42519616 Common - hypothetical protein LJ1741 66 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 42518319 Nonpathogen - hypothetical protein LJ0234 1 None None None 42518497 Nonpathogen - hypothetical protein LJ0404 3 None None None 42518397 Common - Lj965 prophage terminase small subunit LJ0307 3 COG3728 XtmA, Phage terminase, small subunit DNA replication, recombination, and repair 42518663 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, probable fructose specific LJ0741 40 COG3716 ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID Carbohydrate transport and metabolism 42518851 Nonpathogen - hypothetical protein LJ0926 1 None None None 42519838 Nonpathogen - hypothetical protein LJ1789 1 None None None 42518609 Common - fructose-bisphosphate aldolase LJ0687 178 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 42519883 Nonpathogen - hypothetical protein LJ1834 1 None None None 42519905 Common rnpA ribonuclease P LJ1857 53 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 42518943 Nonpathogen - hypothetical protein LJ1017 1 None None None 42519409 Common - hypothetical protein LJ1537 161 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 42519215 Nonpathogen - hypothetical protein LJ1290 4 None None None 42519606 Common - cation-transporting ATPase LJ1731 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42519762 Common - two-component system response regulator LJ0563 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42518134 Common - hypothetical protein LJ0048 5 None None None 42518825 Common - hypothetical protein LJ0900 129 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42519810 Common - phosphomethylpyrimidine kinase (HMP-phosphate kinase) LJ0515 218 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 42518227 Common - major facilitator superfamily permease LJ0141 88 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 42518373 Common - hypothetical protein LJ0286 211 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 42518858 Common - uracil phosphoribosyltransferase LJ0933 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 42519620 Common - surface protein, aggregation promoting factor LJ1745 6 None None None 42519453 Common - hypothetical protein LJ1579 35 COG2184 Fic, Protein involved in cell division Cell division and chromosome partitioning 42518297 Common - hypothetical protein LJ0211 170 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 42519244 Common glyQ glycyl-tRNA synthetase subunit alpha LJ1320 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 42518541 Nonpathogen - hypothetical protein LJ0446 1 None None None 42518253 Common - hypothetical protein LJ0167 4 COG2246 COG2246, Predicted membrane protein Function unknown 42518833 Nonpathogen - hypothetical protein LJ0908 1 None None None 42518250 Common - phosphoglyceromutase LJ0164 154 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 42518820 Common - hypothetical protein LJ0895 111 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42519510 Common - hypothetical protein LJ1634 200 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 42518272 Common - transposase LJ0186 40 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 42519167 Nonpathogen - hypothetical protein LJ1242 1 None None None 42519709 Common - hypothetical protein LJ0616 34 COG3973 COG3973, Superfamily I DNA and RNA helicases General function prediction only 42518989 Nonpathogen - hypothetical protein LJ1064 1 COG1429 CobN, Cobalamin biosynthesis protein CobN and related Mg-chelatases Coenzyme metabolism 42519049 Nonpathogen - hypothetical protein LJ1123 2 COG5015 COG5015, Uncharacterized conserved protein Function unknown 42518354 Common - hypothetical protein LJ0267 187 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42519517 Common rpmI 50S ribosomal protein L35 LJ1640b 131 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 42518593 Common - hypothetical protein LJ0497 11 COG4470 COG4470, Uncharacterized protein conserved in bacteria Function unknown 42519133 Common - isopentenyl pyrophosphate isomerase LJ1208 80 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 42518600 Common - major facilitator superfamily permease LJ0678 232 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42519524 Common - hypothetical protein LJ1647 15 COG3611 DnaB, Replication initiation/membrane attachment protein DNA replication, recombination, and repair 42519712 Common - cation-transporting ATPase LJ0613 232 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42518089 Common - DNA gyrase subunit B LJ0004 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 42519688 Common - hypothetical protein LJ0637 32 COG1737 RpiR, Transcriptional regulators Transcription 42519784 Common - ABC transporter ATPase component LJ0541 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 42519394 Common - oligopeptide ABC transporter solute-binding component LJ1522 156 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 42519777 Common - hypothetical protein LJ0548 99 COG0431 COG0431, Predicted flavoprotein General function prediction only 42518895 Common - phospho-N-acetylmuramoyl-pentapeptide-transferase LJ0970 209 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 42519770 Common - probable chromosome partitioning protein ParB LJ0555 186 COG1475 Spo0J, Predicted transcriptional regulators Transcription 42518698 Common - lactacin F ABC transporter permease component LJ0774 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 42518141 Common - hypothetical protein LJ0055 10 COG3212 COG3212, Predicted membrane protein Function unknown 42519179 Common - hypothetical protein LJ1254 176 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 42518502 Common rpmG 50S ribosomal protein L33 LJ0408b 41 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 42519797 Common - hypothetical protein LJ0528 97 COG1737 RpiR, Transcriptional regulators Transcription 42519052 Common - hypothetical protein LJ1126 2 None None None 42519059 Common - two-component system histidine kinase LJ1133 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42519708 Common - hypothetical protein LJ0617 6 COG4990 COG4990, Uncharacterized protein conserved in bacteria Function unknown 42518199 Common - hypothetical protein LJ0113 29 COG5438 COG5438, Predicted multitransmembrane protein Function unknown 42519721 Common - ABC transporter ATPase component LJ0604 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 42519487 Common - major facilitator superfamily permease LJ1613 27 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42519532 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, probable mannose specific LJ1655 32 COG3444 COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB Carbohydrate transport and metabolism 42519295 Common - Lj928 prophage protein LJ1425 8 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 42519629 Nonpathogen - hypothetical protein LJ1753 1 None None None 42518474 Common - phosphoglycerate mutase LJ0380 153 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 42519427 Common rpmA 50S ribosomal protein L27 LJ1555 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 42518779 Common - beta-galactosidase small subunit LJ0854 38 None None None 42518659 Common - alpha-xylosidase YicI LJ0737 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 42519365 Common - prolyl-tRNA synthetase LJ1493 235 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42518183 Common - hypothetical protein LJ0097 10 COG4814 COG4814, Uncharacterized protein with an alpha/beta hydrolase fold General function prediction only 42518786 Common - aldose 1-epimerase LJ0861 91 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 42518772 Common - peptide chain release factor 2 (RF-2) LJ0847 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 42518904 Common - hypothetical protein LJ0979 32 COG3599 DivIVA, Cell division initiation protein Cell division and chromosome partitioning 42518364 Common - transcription-repair coupling factor LJ0277 237 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 42518159 Common - ABC transporter ATPase component LJ0073 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 42519435 Common - hypothetical protein LJ1561 4 COG4720 COG4720, Predicted membrane protein Function unknown 42518186 Common - hypothetical protein LJ0100 167 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42519480 Common - hypothetical protein LJ1606 189 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 42518563 Common - Holliday junction DNA helicase RuvA LJ0467 210 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 42518103 Nonpathogen - hypothetical protein LJ0018 1 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 42518265 Nonpathogen - hypothetical protein LJ0179 1 None None None 42519535 Common - two-component system histidine kinase LJ1658 143 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 42519008 Common - integrase/recombinase XerD LJ1082 229 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 42519372 Common rpsB 30S ribosomal protein S2 LJ1500 248 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 42519040 Nonpathogen - hypothetical protein LJ1114 2 None None None 42518432 Common rplB 50S ribosomal protein L2 LJ0342 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 42519143 Common - hypothetical protein LJ1218 22 COG2820 Udp, Uridine phosphorylase Nucleotide transport and metabolism 42518587 Common - catabolite control protein A LJ0491 125 COG1609 PurR, Transcriptional regulators Transcription 42518231 Common - fructose-1-phosphate kinase LJ0145 121 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 42519026 Common - tRNA CCA-pyrophosphorylase LJ1100 214 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 42519825 Common - hypothetical protein LJ1776 9 COG4814 COG4814, Uncharacterized protein with an alpha/beta hydrolase fold General function prediction only 42519521 Common - hypothetical protein LJ1644 10 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 42519571 Nonpathogen - hypothetical protein LJ1694 5 None None None 42518459 Common - ABC transporter permease component LJ0365 54 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 42518387 Nonpathogen - Lj965 prophage protein LJ0297 1 None None None 42519298 Nonpathogen - Lj928 prophage protein LJ1426 1 None None None 42519030 Common - hypothetical protein LJ1104 181 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 42518704 Nonpathogen - hypothetical protein LJ0779 1 None None None 42519530 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, probable mannose specific LJ1653 40 COG3716 ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID Carbohydrate transport and metabolism 42518971 Common - hypothetical protein LJ1046 5 None None None 42519209 Common - hypothetical protein LJ1284 5 COG3247 HdeD, Uncharacterized conserved protein Function unknown 42518584 Common - hypothetical protein LJ0488 9 COG4768 COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain General function prediction only 42519566 Common - hypothetical protein LJ1689 56 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 42519545 Common - hypothetical protein LJ1668 12 COG4473 EcsB, Predicted ABC-type exoprotein transport system, permease component Intracellular trafficking and secretion 42518490 Common - deoxyuridine 5'-triphosphate nucleotidohydrolase LJ0397 122 COG0756 Dut, dUTPase Nucleotide transport and metabolism 42519322 Common - Lj928 prophage replication protein LJ1450 4 None None None 42518861 Common - ATP synthase B chain LJ0936 156 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 42519077 Nonpathogen - hypothetical protein LJ1151 1 None None None 42518685 Common - uridine kinase LJ0763 82 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 42519434 Common - 4-oxalocrotonate tautomerase LJ1560b 19 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 42519196 Common - hypothetical protein LJ1271 73 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 42518125 Common - hypothetical protein LJ0039 5 COG4814 COG4814, Uncharacterized protein with an alpha/beta hydrolase fold General function prediction only 42518638 Common - aminopeptidase C LJ0716 16 COG3579 PepC, Aminopeptidase C Amino acid transport and metabolism 42518451 Common - translation initiation factor IF-1 LJ0358 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 42518550 Common - redox-sensing transcriptional repressor Rex LJ0455 57 COG2344 COG2344, AT-rich DNA-binding protein General function prediction only 42518993 Common - alkaline phosphatase like protein LJ1068 130 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 42518846 Common - hypothetical protein LJ0921 36 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 42519821 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable mannose specific LJ0504 30 COG3715 ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Carbohydrate transport and metabolism 42518515 Nonpathogen - hypothetical protein LJ0420 1 None None None 42519071 Common - hypothetical protein LJ1145 72 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 42518333 Common - hypothetical protein LJ0247 10 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 42519446 Common - aminopeptidase C LJ1572 17 COG3579 PepC, Aminopeptidase C Amino acid transport and metabolism 42518539 Nonpathogen - hypothetical protein LJ0444 2 None None None 42519710 Common - hypothetical protein LJ0615 3 COG5549 COG5549, Predicted Zn-dependent protease Posttranslational modification, protein turnover, chaperones 42518695 Nonpathogen - hypothetical protein LJ0771 1 None None None 42519447 Common - hypothetical protein LJ1573 6 COG3576 COG3576, Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase General function prediction only 42519580 Common - hypothetical protein LJ1703 13 COG4720 COG4720, Predicted membrane protein Function unknown 42519598 Common - hypothetical protein LJ1723 11 COG4684 COG4684, Predicted membrane protein Function unknown 42519206 Common - dihydroorotate dehydrogenase LJ1281 237 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 42519550 Common prsA peptidylprolyl isomerase LJ1673 128 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 42519269 Common - hypothetical protein LJ1399 6 COG5617 COG5617, Predicted integral membrane protein Function unknown 42519283 Common - ABC transporter ATPase component LJ1413 248 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42518322 Common - hypothetical protein LJ0236 69 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 42519062 Common - hypothetical protein LJ1136 10 COG3595 COG3595, Uncharacterized conserved protein Function unknown 42519315 Common - Lj928 prophage protein LJ1443 3 None None None 42518414 Common - Lj965 prophage protein LJ0324 17 COG3883 COG3883, Uncharacterized protein conserved in bacteria Function unknown 42518131 Common - D-lactate dehydrogenase LJ0045 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 42518816 Common - ABC transporter solute-binding component, Spermidine/putrescine LJ0891 133 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 42518329 Common - hypothetical protein LJ0243 8 None None None 42518641 Common - aminopeptidase C LJ0719 16 COG3579 PepC, Aminopeptidase C Amino acid transport and metabolism 42518110 Common - hypothetical protein LJ0025 39 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 42518369 Common - cell division protein FtsH-like protein LJ0282 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 42518747 Common - hypothetical protein LJ0822 9 COG4116 COG4116, Uncharacterized protein conserved in bacteria Function unknown 42518217 Common - phosphate/phosphonate ABC transporter permease component LJ0131 85 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 42519818 Common - hypothetical protein LJ0507 131 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 42518962 Nonpathogen - hypothetical protein LJ1036 1 None None None 42518806 Nonpathogen - hypothetical protein LJ0881 1 COG4894 COG4894, Uncharacterized conserved protein Function unknown 42518795 Common - amino acid permease LJ0870 49 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42519001 Common rpmF 50S ribosomal protein L32 LJ1075b 9 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 42518648 Nonpathogen - hypothetical protein LJ0726 1 None None None 42518173 Common - ABC transporter permease component LJ0087 179 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 42518877 Common - septation ring formation regulator EzrA LJ0952 30 COG4477 EzrA, Negative regulator of septation ring formation Cell division and chromosome partitioning 42519842 Common - Na+/H+ antiporter LJ1793 211 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 42518914 Common - hypothetical protein LJ0988 13 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 42519347 Common - hypothetical protein LJ1475 196 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 42519175 Common - hypothetical protein LJ1250 216 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 42519809 Common - hypothetical protein LJ0516 49 COG2365 COG2365, Protein tyrosine/serine phosphatase Signal transduction mechanisms 42519384 Common rplS 50S ribosomal protein L19 LJ1512 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 42518652 Common - hypothetical protein LJ0730 40 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 42519611 Common - hypothetical protein LJ1736 222 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 42518763 Common - CDP-diacylglycerol--glycerol-3-phosphate3-phosphatidyltransferase LJ0838 207 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 42518488 Common - aminopeptidase C LJ0395 16 COG3579 PepC, Aminopeptidase C Amino acid transport and metabolism 42519249 Common - 30S ribosomal protein S21 LJ1324b 149 COG1610 COG1610, Uncharacterized conserved protein Function unknown 42518481 Common - hypothetical protein LJ0387 4 None None None 42519150 Common - hypothetical protein LJ1225 25 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 42518375 Common - Lj965 prophage integrase LJ0288 150 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 42519421 Common - exonuclease VII large subunit LJ1549 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 42519504 Common - putative acylphosphatase LJ1628 109 COG1254 AcyP, Acylphosphatases Energy production and conversion 42518147 Common - hypothetical protein LJ0061 32 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 42519123 Common - probable endonuclease III LJ1198 237 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 42518172 Common - ABC transporter ATPase component LJ0086 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 42519358 Common - ribosome-binding factor A LJ1486 156 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 42519649 Common - seryl-tRNA synthetase LJ0676 245 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 42519279 Nonpathogen - hypothetical protein LJ1409 2 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 42518382 Nonpathogen - Lj965 prophage cro-repressor LJ0294b 2 COG1476 COG1476, Predicted transcriptional regulators Transcription 42519254 Common - L-serine dehydratase, beta chain LJ1329 58 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 42519781 Common - 6-phospho-beta-glucosidase LJ0544 101 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 42519181 Common - hypothetical protein LJ1256 80 COG0778 NfnB, Nitroreductase Energy production and conversion 42518362 Common - transposase LJ0275 64 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 42518120 Common - hypothetical protein LJ0034b 8 None None None 42518978 Common - hypothetical protein LJ1053 3 None None None 42519642 Common - aldehyde-alcohol dehydrogenase LJ1766 207 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 42518150 Common - transposase LJ0064 40 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 42518425 Common rpsL 30S ribosomal protein S12 LJ0335 239 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 42518742 Common - phosphoenolpyruvate-protein phosphotransferase (enzyme I) LJ0817 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 42519666 Common - hypothetical protein LJ0659 94 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 42518341 Common - hypothetical protein LJ0254 5 None None None 42519338 Common - hypothetical protein LJ1466 192 COG0583 LysR, Transcriptional regulator Transcription 42519382 Common - hypothetical protein LJ1510 25 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 42519880 Common - hypothetical protein LJ1831 35 COG1476 COG1476, Predicted transcriptional regulators Transcription 42519876 Common - hypothetical protein LJ1827 134 COG2252 COG2252, Permeases General function prediction only 42519755 Common - hypothetical protein LJ0570 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 42519148 Nonpathogen - hypothetical protein LJ1223 1 None None None 42518660 Common - hypothetical protein LJ0738 39 COG1874 LacA, Beta-galactosidase Carbohydrate transport and metabolism 42518781 Common - lactose operon repressor LJ0856 118 COG1609 PurR, Transcriptional regulators Transcription 42518162 Common - heat shock protein HtpX LJ0076 191 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 42518196 Common - hypothetical protein LJ0110 148 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 42519506 Common - two-component system histidine kinase LJ1630 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42518314 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein LJ0229 239 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 42519005 Common - 6-phosphofructokinase LJ1079 160 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 42518788 Common - excinuclease ABC subunit B LJ0863 225 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 42518395 Common - Lj965 prophage protein LJ0305 22 COG4933 COG4933, Uncharacterized conserved protein Function unknown 42518260 Common - hypothetical protein LJ0174 18 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 42518206 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable mannose specific LJ0120 36 COG3715 ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Carbohydrate transport and metabolism 42518670 Common - hypothetical protein LJ0748 10 COG4814 COG4814, Uncharacterized protein with an alpha/beta hydrolase fold General function prediction only 42519836 Nonpathogen - hypothetical protein LJ1787 1 None None None 42518615 Common - transposase LJ0693 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 42518228 Common - tagatose 1,6-diphosphate aldolase LJ0142 26 COG3684 LacD, Tagatose-1,6-bisphosphate aldolase Carbohydrate transport and metabolism 42519083 Common - ABC transporter ATPase and permease components LJ1157 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42518918 Common - hypothetical protein LJ0992 10 COG5503 COG5503, Uncharacterized conserved small protein Function unknown 42519575 Common - hypothetical protein LJ1698 200 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 42519187 Common - hypothetical protein LJ1262 29 COG3711 BglG, Transcriptional antiterminator Transcription 42519403 Common - hypothetical protein LJ1531 50 COG1461 COG1461, Predicted kinase related to dihydroxyacetone kinase General function prediction only 42519498 Common - transcription elongation factor GreA LJ1622 204 COG0782 GreA, Transcription elongation factor Transcription 42519464 Nonpathogen - hypothetical protein LJ1590 1 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 42519340 Common - P-type proton motive membrane ATPase-like protein LJ1468 232 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42518299 Common - maltose phosphorylase LJ0213 50 COG1554 ATH1, Trehalose and maltose hydrolases (possible phosphorylases) Carbohydrate transport and metabolism 42518232 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, probable fructose specific LJ0146 137 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 42518818 Common - hypothetical protein LJ0893 25 COG4856 COG4856, Uncharacterized protein conserved in bacteria Function unknown 42519230 Common - hypothetical protein LJ1305 32 COG2384 COG2384, Predicted SAM-dependent methyltransferase General function prediction only 42519764 Common - ABC transporter ATPase and permease components LJ0561 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42518522 Common - thymidylate kinase LJ0427 231 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 42518294 Common - UDP-N-acetylglucosamine-1-phosphate uridyltransferase LJ0208 236 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 42519386 Common - 16S rRNA processing protein RimM LJ1514 174 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 42519369 Common - ribosome recycling factor LJ1497 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 42518529 Common - hypothetical protein LJ0434 192 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 42519675 Common - hypothetical protein LJ0650 8 COG4292 COG4292, Predicted membrane protein Function unknown 42519239 Nonpathogen - hypothetical protein LJ1315 1 None None None 42519717 Nonpathogen - hypothetical protein LJ0608 1 None None None 42518679 Nonpathogen - hypothetical protein LJ0757 1 None None None 42519519 Nonpathogen - hypothetical protein LJ1642 2 None None None 42519786 Common - hypothetical protein LJ0539 14 COG1309 AcrR, Transcriptional regulator Transcription 42518548 Common - hypothetical protein LJ0453 101 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 42518504 Common - transcription antitermination protein NusG LJ0409 215 COG0250 NusG, Transcription antiterminator Transcription 42519050 Common - acetolactate synthase LJ1124 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 42519747 Common - ABC transporter ATPase component LJ0578 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 42519131 Common - mevalonate pyrophosphate decarboxylase LJ1206 32 COG3407 MVD1, Mevalonate pyrophosphate decarboxylase Lipid metabolism 42518745 Common - hypothetical protein LJ0820 11 COG4469 CoiA, Competence protein General function prediction only 42518221 Common - asparagine synthase LJ0135 164 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 42519850 Nonpathogen - hypothetical protein LJ1801 1 COG3152 COG3152, Predicted membrane protein Function unknown 42519307 Nonpathogen - Lj928 prophage major head protein LJ1435 1 None None None 42518574 Common - hypothetical protein LJ0478 10 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 42519477 Nonpathogen - hypothetical protein LJ1603 1 None None None 42519885 Common - hypothetical protein LJ1836 15 COG4633 COG4633, Uncharacterized protein conserved in bacteria Function unknown 42518668 Common - hypothetical protein LJ0746 25 COG4690 PepD, Dipeptidase Amino acid transport and metabolism 42519644 Common - hypothetical protein LJ1768 53 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 42519727 Common - hypothetical protein LJ0598 6 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 42519489 Common - tRNA delta(2)-isopentenylpyrophosphate transferase LJ1615 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 42518483 Common - hypothetical protein LJ0389 68 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 42518143 Common - bile salt transporter LJ0057 19 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 42518271 Common - hypothetical protein LJ0185 83 COG2188 PhnF, Transcriptional regulators Transcription 42519293 Common - Lj928 prophage protein LJ1423 4 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 42519012 Common - ribosomal large subunit pseudouridine synthase B LJ1086 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 42519229 Common - hypothetical protein LJ1304 139 COG0327 COG0327, Uncharacterized conserved protein Function unknown 42518281 Common - hypothetical protein LJ0195 142 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 42519703 Common - transposase LJ0622 64 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 42518625 Common - hypothetical protein LJ0703 7 None None None 42519015 Common - cytidylate kinase LJ1089 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 42518095 Common - hypothetical protein LJ0010 75 COG3887 COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain Signal transduction mechanisms 42518721 Common - non-heme iron-containing ferritin LJ0796 114 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 42518466 Common - transposase LJ0372 64 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 42518899 Common - cell division protein FtsA LJ0974 182 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 42519073 Common - conjugated bile salt hydrolase LJ1147 49 COG3049 COG3049, Penicillin V acylase and related amidases Cell envelope biogenesis, outer membrane 42518984 Nonpathogen - hypothetical protein LJ1059 1 COG4372 COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain Function unknown 42518537 Common - adenylosuccinate synthetase LJ0442 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 42519604 Common - hypothetical protein LJ1729 3 None None None 42519857 Common - ABC transporter ATPase component LJ1808 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 42519608 Common nadE NAD synthetase LJ1733 106 COG0171 NadE, NAD synthase Coenzyme metabolism 42519212 Common - hypothetical protein LJ1287 106 COG0393 COG0393, Uncharacterized conserved protein Function unknown 42519093 Common - probable reductase LJ1167 178 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 42519903 Common trmE tRNA modification GTPase TrmE LJ1855 216 COG0486 ThdF, Predicted GTPase General function prediction only 42519198 Common - phosphoenolpyruvate carboxylase LJ1273 116 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 42519165 Common - DNA-damage-inducible protein J LJ1240 5 COG3077 RelB, DNA-damage-inducible protein J DNA replication, recombination, and repair 42519740 Common - ABC transporter ATPase component LJ0585 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42519220 Nonpathogen - hypothetical protein LJ1295 1 None None None 42518136 Common - hypothetical protein LJ0050 186 COG0583 LysR, Transcriptional regulator Transcription 42518352 Common - ABC transporter permease component LJ0265 54 COG4120 COG4120, ABC-type uncharacterized transport system, permease component General function prediction only 42518357 Common - probable RNA helicase LJ0270 242 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 42518886 Common - DNA repair protein RadC LJ0961 177 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 42518927 Common - hypothetical protein LJ1001 117 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 42518121 Common - hypothetical protein LJ0035 11 COG2261 COG2261, Predicted membrane protein Function unknown 42519656 Common - hypothetical protein LJ0669 5 COG0398 COG0398, Uncharacterized conserved protein Function unknown 42518822 Common - probable CrcB-like protein LJ0897 147 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 42518359 Common - alanine racemase LJ0272 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 42518301 Common - multiple sugar ABC transporter ATPase component LJ0215 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 42518607 Common - D-alanyl-D-alanine carboxypeptidase LJ0685 154 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 42518100 Nonpathogen - hypothetical protein LJ0015 2 None None None 42519863 Common - hypothetical protein LJ1814 42 COG1575 MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase Coenzyme metabolism 42518242 Common - hypothetical protein LJ0156 16 COG3757 Acm, Lyzozyme M1 (1,4-beta-N-acetylmuramidase) Cell envelope biogenesis, outer membrane 42519103 Common xerS site-specific tyrosine recombinase XerS LJ1177 208 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 42519612 Common - teichoic acid biosynthesis protein A LJ1737 97 COG1922 WecG, Teichoic acid biosynthesis proteins Cell envelope biogenesis, outer membrane 42518856 Common - hypothetical protein LJ0931 228 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 42518987 Nonpathogen - hypothetical protein LJ1062 1 None None None 42518827 Common - DNA/pantothenate metabolism flavoprotein LJ0902 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 42518835 Nonpathogen - hypothetical protein LJ0910 1 COG4940 ComGF, Competence protein ComGF Intracellular trafficking and secretion 42519028 Common - hypothetical protein LJ1102 50 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 42519512 Common - probable nicotinate-nucleotide adenylyltransferase LJ1636 187 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 42518716 Common - ABC transporter permease component LJ0791 224 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 42519400 Common - acyl carrier protein LJ1528 209 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 42519281 Common - hypothetical protein LJ1411 5 COG1396 HipB, Predicted transcriptional regulators Transcription 42518863 Common - F0F1 ATP synthase subunit alpha LJ0938 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 42519637 Common - hypothetical protein LJ1761 29 None None None 42519564 Common - hypothetical protein LJ1687 4 None None None 42519852 Nonpathogen - hypothetical protein LJ1803 1 None None None 42518492 Common gltX glutamyl-tRNA synthetase LJ0399 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 42519412 Common - methionyl-tRNA formyltransferase LJ1540 221 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 42518582 Common - hypothetical protein LJ0486 110 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 42519543 Nonpathogen - hypothetical protein LJ1666 1 None None None 42518377 Nonpathogen - Lj965 prophage protein LJ0290 1 None None None 42519859 Common - cytochrome d ubiquinol oxidase subunit I LJ1810 166 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 42519813 Common - hypothetical protein LJ0512 56 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 42518255 Nonpathogen - hypothetical protein LJ0169 1 None None None 42519277 Common - ABC transporter ATPase component LJ1407 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 42519399 Common - oligopeptide ABC transporter ATPase component LJ1527 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 42518581 Common - acetate kinase LJ0485 162 COG0282 ackA, Acetate kinase Energy production and conversion 42518283 Common - hypothetical protein LJ0197 39 COG2135 COG2135, Uncharacterized conserved protein Function unknown 42518476 Common - hypothetical protein LJ0382 117 None None None 42518441 Common rplE 50S ribosomal protein L5 LJ0350 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 42519475 Common - hypothetical protein LJ1601 217 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 42518995 Common uvrC excinuclease ABC subunit C LJ1070 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 42519658 Common - hypothetical protein LJ0667 98 COG2409 COG2409, Predicted drug exporters of the RND superfamily General function prediction only 42519430 Common - hypothetical protein LJ1557 46 COG1284 COG1284, Uncharacterized conserved protein Function unknown 42518331 Common - ABC transporter ATPase component LJ0245 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42519444 Common - hypothetical protein LJ1570 9 COG3764 SrtA, Sortase (surface protein transpeptidase) Cell envelope biogenesis, outer membrane 42519865 Common - hypothetical protein LJ1816 84 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 42518938 Common - GTPase EngB LJ1012 200 COG0218 COG0218, Predicted GTPase General function prediction only 42518189 Common - phosphoribosylpyrophosphate synthetase LJ0103 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 42518240 Common - hypothetical protein LJ0154 3 None None None 42518453 Common rpsM 30S ribosomal protein S13 LJ0359 247 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 42518448 Common rplO 50S ribosomal protein L15 LJ0355 216 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 42519492 Common - hypothetical protein LJ1617 8 COG4483 COG4483, Uncharacterized protein conserved in bacteria Function unknown 42518797 Common - glyceraldehyde 3-phosphate dehydrogenase LJ0872 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 42519078 Common - hypothetical protein LJ1152 5 COG1359 COG1359, Uncharacterized conserved protein Function unknown 42518288 Common - methionyl-tRNA synthetase LJ0202 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42518408 Nonpathogen - Lj965 prophage protein LJ0318 2 None None None 42519367 Common - phosphatidate cytidylyltransferase LJ1495 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 42518423 Common - DNA-directed RNA polymerase subunit beta' LJ0333 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 42518499 Common - 1-deoxy-D-xylulose-5-phosphate synthase LJ0406 209 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 42518595 Common - hypothetical protein LJ0499 8 COG4478 COG4478, Predicted membrane protein Function unknown 42518740 Common - ATP-dependent clp protease ATP-binding subunit clpE LJ0815 216 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 42519823 Common - amino acid transporter LJ1774 187 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42519418 Common - hemolysin-like protein LJ1546 131 COG1189 COG1189, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 42518101 Common - hypothetical protein LJ0016 131 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42518411 Nonpathogen - Lj965 prophage protein LJ0321 2 None None None 42519419 Common - geranyltranstransferase LJ1547 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 42518188 Nonpathogen - hypothetical protein LJ0102 1 None None None 42519288 Common - Lj928 prophage lysin LJ1418 16 COG3757 Acm, Lyzozyme M1 (1,4-beta-N-acetylmuramidase) Cell envelope biogenesis, outer membrane 42519251 Common - hypothetical protein LJ1326 112 COG1806 COG1806, Uncharacterized protein conserved in bacteria Function unknown 42518370 Common - hypothetical protein LJ0283 11 COG4485 COG4485, Predicted membrane protein Function unknown 42519499 Common - hypothetical protein LJ1623 186 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 42518439 Common rplN 50S ribosomal protein L14 LJ0348 247 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 42518569 Common - probable RNA helicase LJ0473 247 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 42519482 Common - hydroxymethylglutaryl-CoA reductase LJ1608 62 COG1257 HMG1, Hydroxymethylglutaryl-CoA reductase Lipid metabolism 42519246 Common era GTP-binding protein Era LJ1322 237 COG1159 Era, GTPase General function prediction only 42519651 Common - hypothetical protein LJ0674 25 COG0398 COG0398, Uncharacterized conserved protein Function unknown 42518902 Common - hypothetical protein LJ0977 55 None None None 42518702 Nonpathogen - hypothetical protein LJ0777 1 None None None 42518931 Common rpsT 30S ribosomal protein S20 LJ1005 57 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 42518774 Common - HPr kinase/phosphorylase LJ0849 77 COG1493 HprK, Serine kinase of the HPr protein, regulates carbohydrate metabolism Signal transduction mechanisms 42519661 Common - hypothetical protein LJ0664 59 COG2971 COG2971, Predicted N-acetylglucosamine kinase Carbohydrate transport and metabolism 42519152 Common - hypothetical protein LJ1227 43 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 42518140 Common - prolinase PepPN LJ0054 61 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42518897 Common murG N-acetylglucosaminyl transferase LJ0972 210 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 42518801 Common secG preprotein translocase subunit SecG LJ0876 7 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 42519553 Common - hypothetical protein LJ1676 91 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 42519351 Common dnaK molecular chaperone DnaK LJ1479 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 42518507 Common - ABC transporter permease component LJ0412 180 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 42519094 Common - galactoside O-acetyltransferase LJ1168 191 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 42518380 Nonpathogen - Lj965 prophage repressor LJ0293 2 COG2856 COG2856, Predicted Zn peptidase Amino acid transport and metabolism 42519783 Common - hypothetical protein LJ0542 29 COG3711 BglG, Transcriptional antiterminator Transcription 42519847 Common - pyrrolidone-carboxylate peptidase LJ1798 56 COG2039 Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) Posttranslational modification, protein turnover, chaperones 42519034 Common - DNA topoisomerase I LJ1108 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 42518955 Common - hypothetical protein LJ1029 150 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 42518734 Common - amino acid permease LJ0809 161 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 42518360 Common - hypothetical protein LJ0273 8 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 42519513 Common - hypothetical protein LJ1637 40 COG1161 COG1161, Predicted GTPases General function prediction only 42518693 Nonpathogen - bacteriocin lactacin F, subunit LafX precursor LJ0769b 1 None None None 42519200 Common - pyrimidine regulatory protein PyrR LJ1275 117 COG2065 PyrR, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase Nucleotide transport and metabolism 42518152 Common - two-component regulatory system histidine kinase LJ0066 222 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 42519183 Common - hypothetical protein LJ1258 9 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42518976 Common - dTDP-4-dehydrorhamnose 3,5-epimerase LJ1051 167 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 42519252 Common - hypothetical protein LJ1327 153 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 42519668 Common - hypothetical protein LJ0657 2 None None None 42519310 Common - Lj928 prophage protein LJ1438 9 None None None 42518753 Common - hypothetical protein LJ0828 54 COG2706 COG2706, 3-carboxymuconate cyclase Carbohydrate transport and metabolism 42518175 Common - hypothetical protein LJ0089 75 COG3189 COG3189, Uncharacterized conserved protein Function unknown 42518399 Common - Lj965 prophage portal protein LJ0309 10 None None None 42518968 Nonpathogen - hypothetical protein LJ1042 1 None None None 42518642 Common - hypothetical protein LJ0720 133 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42519738 Common - hypothetical protein LJ0587 28 COG3610 COG3610, Uncharacterized conserved protein Function unknown 42519119 Common - hypothetical protein LJ1194 11 COG3599 DivIVA, Cell division initiation protein Cell division and chromosome partitioning 42519317 Nonpathogen - Lj928 prophage protein LJ1445 1 None None None 42519694 Common - S-ribosylhomocysteinase LJ0631 55 COG1854 LuxS, LuxS protein involved in autoinducer AI2 synthesis Signal transduction mechanisms 42518513 Nonpathogen - hypothetical protein LJ0418 1 None None None 42518416 Nonpathogen - Lj965 prophage protein LJ0326 1 None None None 42519043 Common - hypothetical protein LJ1117 114 COG2855 COG2855, Predicted membrane protein Function unknown 42518112 Common - hypothetical protein LJ0027 3 COG1396 HipB, Predicted transcriptional regulators Transcription 42518367 Common - hypothetical protein LJ0280 9 COG1098 VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) Translation, ribosomal structure and biogenesis 42519270 Common - hypothetical protein LJ1400 232 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42519342 Common - dihydrofolate reductase LJ1470 145 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 42519807 Common - sucrose-6-phosphate hydrolase LJ0518 52 COG1621 SacC, Beta-fructosidases (levanase/invertase) Carbohydrate transport and metabolism 42519437 Nonpathogen - hypothetical protein LJ1563 1 None None None 42519064 Common - ABC transporter ATPase component LJ1138 246 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 42519791 Nonpathogen - hypothetical protein LJ0534 1 None None None 42519032 Common - ribonuclease HII LJ1106 239 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 42519349 Common - GTP-binding protein LepA LJ1477 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 42519324 Nonpathogen - Lj928 prophage protein LJ1452 1 None None None 42519902 Common - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA LJ1854 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 42518875 Common - hypothetical protein LJ0950 6 COG5506 COG5506, Uncharacterized conserved protein Function unknown 42518650 Common - ABC transporter ATPase component LJ0728 249 COG4619 COG4619, ABC-type uncharacterized transport system, ATPase component General function prediction only 42518840 Common - hypothetical protein LJ0915 228 COG1168 MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Amino acid transport and metabolism 42519159 Common - hypothetical protein LJ1234 3 COG1694 MazG, Predicted pyrophosphatase General function prediction only 42518127 Common - hypothetical protein LJ0041 36 COG0628 PerM, Predicted permease General function prediction only 42519840 Common - hypothetical protein LJ1791 10 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 42519266 Common - probable methyltransferase LJ1396 195 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 42518222 Common - hypothetical protein LJ0136 20 COG3919 COG3919, Predicted ATP-grasp enzyme General function prediction only 42519888 Common - hypothetical protein LJ1839 22 None None None 42518676 Common - glutamine ABC transporter solute-binding component LJ0754 178 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42518836 Common - hypothetical protein LJ0911 27 COG0827 COG0827, Adenine-specific DNA methylase DNA replication, recombination, and repair 42518145 Nonpathogen - hypothetical protein LJ0059 1 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 42519692 Common - hypothetical protein LJ0633 156 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 42518828 Common - hypothetical protein LJ0903 6 COG5652 COG5652, Predicted integral membrane protein Function unknown 42519792 Nonpathogen - hypothetical protein LJ0533 1 None None None 42518751 Common - hypothetical protein LJ0826 25 COG4716 COG4716, Myosin-crossreactive antigen Function unknown 42518633 Common - hypothetical protein LJ0711 4 None None None 42518203 Common - putative tagatose-6-phosphate ketose/aldose isomerase LJ0117 26 COG2222 AgaS, Predicted phosphosugar isomerases Cell envelope biogenesis, outer membrane 42519776 Common - hypothetical protein LJ0549 101 COG0431 COG0431, Predicted flavoprotein General function prediction only 42519789 Common - hypothetical protein LJ0536 92 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42518872 Common - hypothetical protein LJ0947 131 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 42518106 Common - hypothetical protein LJ0021 166 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 42518544 Common - two-component system response regulator LJ0449 49 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 42518355 Common rpmE2 50S ribosomal protein L31 type B LJ0268 163 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 42519624 Common - hypothetical protein LJ1748 14 None None None 42519240 Nonpathogen - hypothetical protein LJ1316 1 None None None 42519720 Common - hypothetical protein LJ0605 17 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 42519878 Common - hypothetical protein LJ1829 135 COG2252 COG2252, Permeases General function prediction only 42518605 Nonpathogen - hypothetical protein LJ0683 1 None None None 42519354 Common - hypothetical protein LJ1482 21 COG4832 COG4832, Uncharacterized conserved protein Function unknown 42519516 Common rplT 50S ribosomal protein L20 LJ1640 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 42519044 Common - hypothetical protein LJ1118 97 COG0583 LysR, Transcriptional regulator Transcription 42519118 Common - hypothetical protein LJ1193 132 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 42519010 Common - hypothetical protein LJ1084 153 COG1354 COG1354, Uncharacterized conserved protein Function unknown 42519686 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, probable glucose specific LJ0639 60 COG2190 NagE, Phosphotransferase system IIA components Carbohydrate transport and metabolism 42518883 Common valS valyl-tRNA synthetase LJ0958 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42519866 Common - hypothetical protein LJ1817 144 COG1737 RpiR, Transcriptional regulators Transcription 42519137 Common - hypothetical protein LJ1212 20 COG2746 COG2746, Aminoglycoside N3'-acetyltransferase Defense mechanisms 42519398 Common - oligopeptide ABC transporter ATPase component LJ1526 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 42519702 Common - hypothetical protein LJ0623 28 COG3711 BglG, Transcriptional antiterminator Transcription 42519527 Common - formamidopyrimidine-DNA glycosylase LJ1650 183 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 42519716 Common - exodeoxyribonuclease A LJ0609 195 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 42519276 Common - ABC transporter permease component LJ1406 100 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 42519479 Common recX recombination regulator RecX LJ1605 49 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 42518468 Common - hypothetical protein LJ0374 68 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 42518623 Common - major facilitator superfamily permease LJ0701 179 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42518303 Common - multiple sugar ABC transporter permease component LJ0217 129 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 42518461 Common rplM 50S ribosomal protein L13 LJ0367 216 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 42519856 Common - hypothetical protein LJ1807 31 COG1434 COG1434, Uncharacterized conserved protein Function unknown 42519602 Common - hypothetical protein LJ1727 63 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 42519743 Common - hypothetical protein LJ0582 62 COG1316 LytR, Transcriptional regulator Transcription 42519055 Common - hypothetical protein LJ1129 10 COG3548 COG3548, Predicted integral membrane protein Function unknown 42518287 Common - hypothetical protein LJ0201 161 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42519132 Common - mevalonate kinase LJ1207 24 COG1577 ERG12, Mevalonate kinase Lipid metabolism 42519085 Nonpathogen - hypothetical protein LJ1159 2 None None None 42518980 Common - hypothetical protein LJ1055 61 COG3593 COG3593, Predicted ATP-dependent endonuclease of the OLD family DNA replication, recombination, and repair 42519233 Common - ABC transporter ATPase component LJ1309 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 42518567 Common - DNA polymerase IV LJ0471 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 42518368 Common - hypothetical protein LJ0281 203 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 42519069 Common - hypothetical protein LJ1143 145 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 42519699 Common - oligopeptide ABC transporter ABC transporter solute-binding component LJ0626 148 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 42519341 Common - major facilitator superfamily permease LJ1469 39 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 42518214 Common - hypothetical protein LJ0128 92 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 42519019 Common - hypothetical protein LJ1093 56 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 42519189 Common - hypothetical protein LJ1264 14 COG2407 FucI, L-fucose isomerase and related proteins Carbohydrate transport and metabolism 42519577 Common - ABC transporter ATPase component LJ1700 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42519592 Common - glutamyl-tRNA(Gln) amidotransferase subunit A LJ1717 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 42518204 Common - hypothetical protein LJ0118 118 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 42519125 Common asnC asparaginyl-tRNA synthetase LJ1200 249 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 42518211 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, probable galactitol/fructose specific LJ0125 17 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 42518890 Nonpathogen - hypothetical protein LJ0965 1 None None None 42518310 Common - UDP-N-acetylglucosamine 1-carboxyvinyltransferase LJ0225 209 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 42519060 Common - hypothetical protein LJ1134 10 COG3212 COG3212, Predicted membrane protein Function unknown 42518244 Common - hypothetical protein LJ0158 89 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 42519681 Common - hypothetical protein LJ0644 4 None None None 42519500 Common - phenylalanyl-tRNA synthetase beta chain LJ1624 238 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 42519318 Nonpathogen - Lj928 prophage protein LJ1446 1 None None None 42519677 Common - hypothetical protein LJ0648 11 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 42518091 Common rpsF 30S ribosomal protein S6 LJ0006 172 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 42519493 Common - hypothetical protein LJ1618 115 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 42519299 Nonpathogen - Lj928 prophage minor tail protein LJ1427 1 None None None 42519162 Nonpathogen - hypothetical protein LJ1237 1 None None None 42518809 Common eutD phosphotransacetylase LJ0884 166 COG0280 Pta, Phosphotransacetylase Energy production and conversion 42518293 Common - purine operon repressor LJ0207 134 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 42518629 Common - hypothetical protein LJ0707 140 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42518530 Common - hypothetical protein LJ0435 191 COG0456 RimI, Acetyltransferases General function prediction only 42519587 Common - hypothetical protein LJ1710 2 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 42519111 Common - ribosomal large subunit pseudouridine synthase D LJ1186 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 42518694 Nonpathogen - lactacin F immunity protein LJ0770 1 None None None 42518393 Nonpathogen - Lj965 prophage protein LJ0303 1 None None None 42518831 Common - hypothetical protein LJ0906 15 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 42518613 Common - hypothetical protein LJ0691 52 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 42518165 Common - hypothetical protein LJ0079 3 None None None 42518994 Common - hypothetical protein LJ1069 73 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 42518924 Common - hypothetical protein LJ0998 213 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 42518493 Common - cysteinyl-tRNA synthetase LJ0400 242 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42519095 Common - hypothetical protein LJ1169 169 COG0344 COG0344, Predicted membrane protein Function unknown 42519379 Common - hypothetical protein LJ1507 15 COG4224 COG4224, Uncharacterized protein conserved in bacteria Function unknown 42519896 Nonpathogen - hypothetical protein LJ1847 2 None None None 42518190 Common - amino acid permease LJ0104 125 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 42519086 Common - recombination factor protein RarA LJ1160 248 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 42519582 Common - ABC transporter permease component LJ1705 50 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 42518800 Common - enolase LJ0875 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 42519882 Nonpathogen - hypothetical protein LJ1833 1 None None None 42518546 Common - hypothetical protein LJ0451 6 None None None 42518743 Common - hypothetical protein LJ0818 54 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 42519309 Common - Lj928 prophage protein LJ1437 6 None None None 42519871 Common - hypothetical protein LJ1822 206 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 42518087 Common - hypothetical protein LJ0002b 16 COG2501 COG2501, Uncharacterized conserved protein Function unknown 42518430 Common rplD 50S ribosomal protein L4 LJ0340 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 42518317 Common - arsenate reductase LJ0232 146 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 42518855 Common prfA peptide chain release factor 1 LJ0930 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 42519458 Common - aminopeptidase N LJ1584 164 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 42518521 Nonpathogen - hypothetical protein LJ0426 1 None None None 42518644 Common - major facilitator superfamily permease LJ0722 178 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42518177 Common - methylated DNA-protein cysteine methyltransferase DNA binding domain LJ0091 123 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 42519180 Common - hypothetical protein LJ1255 14 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 42518349 Common - sucrose phosphorylase LJ0262 98 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 42518406 Nonpathogen - Lj965 prophage protein LJ0316 2 None None None 42519732 Nonpathogen - hypothetical protein LJ0593 1 None None None 42519177 Common - hypothetical protein LJ1252 21 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 42518114 Common - hypothetical protein LJ0029 163 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 42518167 Common - hypothetical protein LJ0081 160 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42518959 Common - hypothetical protein LJ1033 6 None None None 42519735 Nonpathogen - hypothetical protein LJ0590 3 None None None 42518843 Common - two-component system response regulator LJ0918 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42518560 Common - ABC transporter ATPase and permease components LJ0464 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42518953 Common - hypothetical protein LJ1027 200 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 42518921 Common - GTP-binding protein typA/bipA-like protein LJ0995 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 42519067 Common - NifU-like protein LJ1141 144 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 42518085 Common - chromosomal replication initiator protein DnaA LJ0001 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 42518985 Common - hypothetical protein LJ1060 42 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 42519802 Common - hypothetical protein LJ0523 133 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42518926 Common - hypothetical protein LJ1000 63 COG3480 SdrC, Predicted secreted protein containing a PDZ domain Signal transduction mechanisms 42518418 Nonpathogen - Lj965 prophage holin LJ0328 1 None None None 42519892 Common - ornithine decarboxylase LJ1843 82 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 42519426 Common - Xaa-Pro aminopeptidase LJ1554 247 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 42518790 Common - hypothetical protein LJ0865 4 COG3247 HdeD, Uncharacterized conserved protein Function unknown 42519659 Common - hypothetical protein LJ0666 16 COG1309 AcrR, Transcriptional regulator Transcription 42519171 Common eno phosphopyruvate hydratase LJ1246 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 42518940 Common - hypothetical protein LJ1014 2 None None None 42519806 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, sucrose specific LJ0519 60 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42519556 Common - hypothetical protein LJ1679 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 42518386 Nonpathogen - Lj965 prophage protein LJ0296b 1 None None None 42519258 Nonpathogen - hypothetical protein LJ1388 1 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 42519020 Common - hypothetical protein LJ1094 23 COG3410 COG3410, Uncharacterized conserved protein Function unknown 42518154 Common - hypothetical protein LJ0068 8 COG4853 COG4853, Uncharacterized protein conserved in bacteria Function unknown 42518967 Nonpathogen - truncated transposase LJ1041 1 None None None 42518732 Common - hypothetical protein LJ0807 217 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 42519758 Common - ABC transporter ATPase component LJ0567 249 COG4152 COG4152, ABC-type uncharacterized transport system, ATPase component General function prediction only 42518960 Common - hypothetical protein LJ1034 53 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 42518737 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable cellobiose specific LJ0812 38 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 42519646 Common - hypothetical protein LJ1771 117 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 42519746 Common - ABC transporter permease component LJ0579 193 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 42518975 Common - glucose-1-phosphate thymidylyltransferase LJ1050 232 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 42519350 Common - chaperone protein DnaJ LJ1478 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 42518791 Common - hypothetical protein LJ0866 140 COG1660 COG1660, Predicted P-loop-containing kinase General function prediction only 42519615 Nonpathogen - hypothetical protein LJ1740 2 None None None 42518656 Common - hypothetical protein LJ0734 67 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 42519526 Common - dephospho-CoA kinase LJ1649 211 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 42518999 Common - hypothetical protein LJ1074 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 42518135 Common - hypothetical protein LJ0049 99 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42519551 Common - hypothetical protein LJ1674 45 COG3481 COG3481, Predicted HD-superfamily hydrolase General function prediction only 42518866 Common - ATP synthase epsilon chain LJ0941 141 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 42519652 Common - hypothetical protein LJ0673 79 COG0657 Aes, Esterase/lipase Lipid metabolism 42518324 Common - hypothetical protein LJ0238 15 COG1309 AcrR, Transcriptional regulator Transcription 42518187 Common - hypothetical protein LJ0101 164 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42519567 Nonpathogen - hypothetical protein LJ1690 1 None None None 42519361 Common - hypothetical protein LJ1489 31 COG2740 COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination Transcription 42519539 Common - hypothetical protein LJ1662 117 COG2188 PhnF, Transcriptional regulators Transcription 42518443 Common rpsH 30S ribosomal protein S8 LJ0351 248 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 42519623 Common - phosphate-starvation-inducible protein PsiE LJ1747b 11 COG3223 COG3223, Predicted membrane protein Function unknown 42518739 Common - hypothetical protein LJ0814 3 None None None 42518413 Common - Lj965 prophage protein LJ0323 3 None None None 42518708 Common - hypothetical protein LJ0783 229 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42518777 Common - thioredoxin reductase LJ0852 249 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 42519484 Common - hypothetical protein LJ1610 73 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 42518164 Common - hypothetical protein LJ0078 28 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 42518428 Common rpsJ 30S ribosomal protein S10 LJ0338 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 42519576 Common - major facilitator superfamily permease LJ1699 5 COG4200 COG4200, Uncharacterized protein conserved in bacteria Function unknown 42518269 Common - hypothetical protein LJ0183 3 None None None 42519326 Common - Lj928 prophage protein LJ1454 6 COG4306 COG4306, Uncharacterized protein conserved in bacteria Function unknown 42518243 Common - hypothetical protein LJ0157 3 None None None 42519630 Nonpathogen - hypothetical protein LJ1754 1 None None None 42518098 Common - fructokinase LJ0013 113 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 42519287 Common - hypothetical protein LJ1417 34 None None None 42518234 Common - hypothetical protein LJ0148 6 COG5617 COG5617, Predicted integral membrane protein Function unknown 42519414 Common - DNA-directed RNA polymerase omega subunit LJ1542 16 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 42518534 Nonpathogen - hypothetical protein LJ0439 1 None None None 42518770 Common - hypothetical protein LJ0845 173 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 42518108 Common - hypothetical protein LJ0023 9 COG5523 COG5523, Predicted integral membrane protein Function unknown 42518279 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable cellobiose specific LJ0193 38 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 42519153 Common - hypothetical protein LJ1228 55 COG2945 COG2945, Predicted hydrolase of the alpha/beta superfamily General function prediction only 42518713 Common - hypothetical protein LJ0788 19 COG0456 RimI, Acetyltransferases General function prediction only 42518908 Nonpathogen - hypothetical protein LJ0982 1 None None None 42518346 Common - raffinose operon transcriptional regulator LJ0259 119 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 42519829 Common - hypothetical protein LJ1780 29 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 42519639 Common - hypothetical protein LJ1763 23 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 42519705 Common - elongation factor P LJ0620 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 42518405 Nonpathogen - Lj965 prophage protein LJ0315 2 None None None 42518478 Common - hypothetical protein LJ0384 214 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 42518579 Common - hypothetical protein LJ0483 237 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 42518701 Nonpathogen - hypothetical protein LJ0776 1 None None None 42518635 Common - probable glutaminase LJ0713 72 COG2066 GlsA, Glutaminase Amino acid transport and metabolism 42519845 Common - hypothetical protein LJ1796 3 None None None 42518117 Common - major facilitator superfamily permease LJ0032 16 COG2270 COG2270, Permeases of the major facilitator superfamily General function prediction only 42519594 Common - hypothetical protein LJ1719 9 COG4851 CamS, Protein involved in sex pheromone biosynthesis General function prediction only 42518558 Nonpathogen - hypothetical protein LJ0462 1 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 42518554 Common - hypothetical protein LJ0459 4 COG1289 COG1289, Predicted membrane protein Function unknown 42519541 Common - phenylalanyl-tRNA synthetase beta chain LJ1664 201 COG0073 ARC1, EMAP domain General function prediction only 42519104 Common - hypothetical protein LJ1178 191 COG0583 LysR, Transcriptional regulator Transcription 42518470 Common - hypothetical protein LJ0376 68 COG0640 ArsR, Predicted transcriptional regulators Transcription 42519478 Common - hypothetical protein LJ1604 15 COG3557 COG3557, Uncharacterized domain/protein associated with RNAses G and E Translation, ribosomal structure and biogenesis 42518689 Common - lactacin F two-component system response regulator LJ0766 23 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 42518720 Common - hypothetical protein LJ0795 48 COG1288 COG1288, Predicted membrane protein Function unknown 42519834 Nonpathogen - hypothetical protein LJ1785 1 None None None 42518338 Common - hypothetical protein LJ0251 52 COG1959 COG1959, Predicted transcriptional regulator Transcription 42519431 Nonpathogen - hypothetical protein LJ1558 1 None None None 42519584 Common - hypothetical protein LJ1707 26 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 42518495 Common - hypothetical protein LJ0402 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 42518947 Common - hypothetical protein LJ1021 63 COG1316 LytR, Transcriptional regulator Transcription 42518900 Common - cell division protein FtsZ LJ0975 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 42518936 Common tig trigger factor LJ1010 212 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 42518437 Common rpmC 50S ribosomal protein L29 LJ0346b 170 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 42519768 Common - chromosome partitioning protein ParB LJ0557 187 COG1475 Spo0J, Predicted transcriptional regulators Transcription 42519142 Common - hypothetical protein LJ1217 20 COG2820 Udp, Uridine phosphorylase Nucleotide transport and metabolism 42519529 Common - hypothetical protein LJ1652 3 None None None 42518463 Common - ABC transporter permease component LJ0369 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42519149 Common - hypothetical protein LJ1224 9 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42519135 Common - ABC transporter ATPase and permease components LJ1210 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42519130 Common - mevalonate kinase LJ1205 49 COG1577 ERG12, Mevalonate kinase Lipid metabolism 42519714 Common - N-acetylmannosamine-6-phosphate 2-epimerase LJ0611 44 COG3010 NanE, Putative N-acetylmannosamine-6-phosphate epimerase Carbohydrate transport and metabolism 42518765 Common - hypothetical protein LJ0840 76 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 42518588 Common - hypothetical protein LJ0492 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 42519242 Common - DNA primase LJ1318 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 42519811 Common - hypothetical protein LJ0514 57 COG3442 COG3442, Predicted glutamine amidotransferase General function prediction only 42518328 Common - hypothetical protein LJ0242 19 COG1309 AcrR, Transcriptional regulator Transcription 42518274 Common - 6-phospho-beta-glucosidase LJ0188 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 42519226 Common - ABC transporter ATPase component LJ1301 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42518577 Common - hypothetical protein LJ0481 7 None None None 42518424 Common - hypothetical protein LJ0334 29 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 42519392 Common - chromosome partitioning protein Smc LJ1520 211 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42518802 Common - ribonuclease R LJ0877 193 COG0557 VacB, Exoribonuclease R Transcription 42518717 Common - ABC transporter ATPase component LJ0792 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 42518305 Common - glucan 1,6-alpha-glucosidase LJ0220 160 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 42518881 Common - hypothetical protein LJ0956 21 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 42518813 Common - ABC transporter ATPase component, Spermidine/putrescine LJ0888 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 42518285 Common - ComE operon protein 2. LJ0199 92 COG2131 ComEB, Deoxycytidylate deaminase Nucleotide transport and metabolism 42519664 Common - hypothetical protein LJ0661 43 COG1846 MarR, Transcriptional regulators Transcription 42519415 Common - guanylate kinase LJ1543 214 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 42518658 Common - beta-glucosidase LJ0736 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 42518570 Common - alanyl-tRNA synthetase LJ0474 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42519401 Common - fatty acid/phospholipid synthesis protein LJ1529 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 42519854 Common - hypothetical protein LJ1805 14 COG3477 COG3477, Predicted periplasmic/secreted protein Function unknown 42519741 Nonpathogen - hypothetical protein LJ0584 1 None None None 42519098 Common - hypothetical protein LJ1172 187 COG0583 LysR, Transcriptional regulator Transcription 42518350 Common - serine hydroxymethyltransferase LJ0263 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 42518674 Common - glutamine ABC transporter solute-binding component LJ0752 182 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42518126 Nonpathogen - hypothetical protein LJ0040 1 None None None 42519217 Common - hypothetical protein LJ1292 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 42518246 Common - hypothetical protein LJ0160 164 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 42519832 Common - DLTB protein LJ1783 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 42518838 Common - levansucrase precursor LJ0913 16 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 42519590 Common - putative lipid kinase LJ1715 114 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 42519861 Common - ABC transporter ATPase and permease components LJ1812 249 COG4988 CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 42519218 Nonpathogen - hypothetical protein LJ1293 1 None None None 42518913 Common - hypothetical protein LJ0987 160 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 42518379 Common - Lj965 prophage protein LJ0292 2 None None None 42519127 Common - hypothetical protein LJ1202 198 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 42519115 Common - hypothetical protein LJ1190 48 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 42518631 Common - uracil permease LJ0709 125 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 42518353 Common - ABC transporter ATPase component LJ0266 249 COG1101 PhnK, ABC-type uncharacterized transport system, ATPase component General function prediction only 42518372 Common - HSP33 chaperonin LJ0285 132 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 42518879 Common - probable thiamine biosynthesis protein ThiI LJ0954 94 COG0301 ThiI, Thiamine biosynthesis ATP pyrophosphatase Coenzyme metabolism 42519024 Common - hypothetical protein LJ1098 101 COG3883 COG3883, Uncharacterized protein conserved in bacteria Function unknown 42519774 Common - hypothetical protein LJ0551 50 COG2365 COG2365, Protein tyrosine/serine phosphatase Signal transduction mechanisms 42518603 Common - export protein for polysaccharides and teichoic acids LJ0681 39 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 42519275 Common fumC fumarate hydratase LJ1405 237 COG0114 FumC, Fumarase Energy production and conversion 42519328 Common - Lj928 prophage cro-repressor LJ1456 3 None None None 42518277 Nonpathogen - hypothetical protein LJ0191 1 None None None 42519297 Common - Lj928 prophage protein LJ1425d 18 COG5412 COG5412, Phage-related protein Function unknown 42518758 Common - stage III sporulation protein E LJ0833 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 42518532 Common - hypothetical protein LJ0437 18 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42518542 Nonpathogen - hypothetical protein LJ0447 2 None None None 42518760 Common - hypothetical protein LJ0835 128 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 42518391 Nonpathogen - Lj965 prophage protein LJ0301 1 None None None 42518683 Common - hypothetical protein LJ0761 8 COG3595 COG3595, Uncharacterized conserved protein Function unknown 42519671 Common - ABC transporter ATPase component LJ0654 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 42518611 Common - hypoxanthine-guanine phosphoribosyltransferase LJ0689 154 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 42518922 Common - hypothetical protein LJ0996 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 42519897 Common - ABC transporter ATPase component LJ1848 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42519751 Common - hypothetical protein LJ0574 6 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42518266 Common greA transcription elongation factor GreA LJ0180 204 COG0782 GreA, Transcription elongation factor Transcription 42518192 Nonpathogen - hypothetical protein LJ0106 1 None None None 42519472 Common - putative UDP-N-acetylglucosamine 2-epimerase LJ1598 153 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 42519106 Common - hypothetical protein LJ1180 52 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 42519795 Common - hypothetical protein LJ0530 44 COG4781 COG4781, Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase Energy production and conversion 42519097 Common - DNA topoisomerase IV subunit A LJ1171 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 42518853 Common - hypothetical protein LJ0928 67 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 42518116 Common - hypothetical protein LJ0031 4 COG1283 NptA, Na+/phosphate symporter Inorganic ion transport and metabolism 42518526 Common - hypothetical protein LJ0431 210 COG0313 COG0313, Predicted methyltransferases General function prediction only 42518868 Common - MreB-like protein LJ0943 205 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 42519461 Common - two-component system response regulator LJ1587 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42519193 Common - glycerol kinase LJ1268 175 COG0554 GlpK, Glycerol kinase Energy production and conversion 42519534 Common - hypothetical protein LJ1657 95 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 42519769 Common - chromosome partitioning protein ParA LJ0556 233 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 42519868 Common murQ N-acetylmuramic acid-6-phosphate etherase LJ1819 83 COG2103 COG2103, Predicted sugar phosphate isomerase General function prediction only 42518784 Common - galactokinase LJ0859 80 COG0153 GalK, Galactokinase Carbohydrate transport and metabolism 42519520 Common - hypothetical protein LJ1643 3 None None None 42519204 Common pyrB aspartate carbamoyltransferase catalytic subunit LJ1279 238 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 42518347 Common - raffinose permease containing phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA domain LJ0260 97 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 42518212 Common - hypothetical protein LJ0126 112 COG2188 PhnF, Transcriptional regulators Transcription 42518945 Nonpathogen - hypothetical protein LJ1019 1 None None None 42519374 Common - hypothetical protein LJ1502 90 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 42518627 Common - hypothetical protein LJ0705 102 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42519407 Common - ribulose-phosphate 3-epimerase LJ1535 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 42519579 Common - hypothetical protein LJ1702 73 COG1912 COG1912, Uncharacterized conserved protein Function unknown 42519378 Common - hypothetical protein LJ1506 13 COG3763 COG3763, Uncharacterized protein conserved in bacteria Function unknown 42519684 Common - hypothetical protein LJ0641 44 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42518691 Common - lactacin F transporter auxillary protein LJ0768 4 None None None 42519343 Common thyA thymidylate synthase LJ1471 145 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 42519120 Common - hypothetical protein LJ1195 11 COG4474 COG4474, Uncharacterized protein conserved in bacteria Function unknown 42519311 Common - Lj928 prophage protein LJ1439 23 COG1783 XtmB, Phage terminase large subunit General function prediction only 42519589 Common - hypothetical protein LJ1714 126 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42518295 Common - ribose-phosphate pyrophosphokinase LJ0209 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 42518290 Common - hypothetical protein LJ0204 21 COG1658 COG1658, Small primase-like proteins (Toprim domain) DNA replication, recombination, and repair 42519626 Nonpathogen - hypothetical protein LJ1750 1 None None None 42519160 Common - hypothetical protein LJ1235 29 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 42519679 Common - hypothetical protein LJ0646 4 None None None 42519599 Common - hypothetical protein LJ1724 12 COG3091 SprT, Uncharacterized protein conserved in bacteria Function unknown 42519360 Common - hypothetical protein LJ1488 5 COG1358 RPL8A, Ribosomal protein HS6-type (S12/L30/L7a) Translation, ribosomal structure and biogenesis 42518511 Common rplL 50S ribosomal protein L7/L12 LJ0416 214 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 42519063 Common - branched-chain amino acid transport system carrier protein LJ1137 47 COG1114 BrnQ, Branched-chain amino acid permeases Amino acid transport and metabolism 42518093 Common rpsR 30S ribosomal protein S18 LJ0008 214 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 42518321 Common - hypothetical protein LJ0235 3 None None None 42519260 Common - aspartate aminotransferase LJ1390 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 42518415 Nonpathogen - Lj965 prophage protein LJ0325 4 None None None 42519502 Common - hypothetical protein LJ1626 105 COG1733 COG1733, Predicted transcriptional regulators Transcription 42519697 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable N-acetylgalactosamine specific LJ0628 36 COG3715 ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Carbohydrate transport and metabolism 42518446 Common rpsE 30S ribosomal protein S5 LJ0354 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 42518237 Common - hypothetical protein LJ0151 88 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 42518618 Nonpathogen - hypothetical protein LJ0696 1 None None None 42519441 Common - hypothetical protein LJ1567 80 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 42518156 Common - serine protease do-like HtrA LJ0070 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 42518179 Common - NAD-dependent deacetylase LJ0093 147 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 42518486 Common - hypothetical protein LJ0393 229 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42519843 Common - hypothetical protein LJ1794 5 None None None 42519022 Common - hypothetical protein LJ1096 4 None None None 42518518 Common - DNA polymerase III subunit gamma/tau LJ0423 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 42519088 Common - hypothetical protein LJ1162 2 None None None 42519723 Nonpathogen - hypothetical protein LJ0602 1 None None None 42518384 Nonpathogen - Lj965 prophage protein with HTH domain LJ0296 1 COG3423 Nlp, Predicted transcriptional regulator Transcription 42518197 Common - hypothetical protein LJ0111 9 COG5438 COG5438, Predicted multitransmembrane protein Function unknown 42519158 Common - hypothetical protein LJ1233 3 None None None 42519256 Common - peptide methionine sulfoxide reductase MsrA LJ1331 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 42518248 Nonpathogen - hypothetical protein LJ0162 1 None None None 42518950 Common - hypothetical protein LJ1024 40 COG4464 CapC, Capsular polysaccharide biosynthesis protein Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 42518892 Common - S-adenosyl-methyltransferase MraW LJ0967 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 42518973 Common - hypothetical protein LJ1048 162 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 42518123 Common - hypothetical protein LJ0037 160 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 42519424 Common - hypothetical protein LJ1552 26 COG1302 COG1302, Uncharacterized protein conserved in bacteria Function unknown 42518735 Common - hypothetical protein LJ0810 6 COG3757 Acm, Lyzozyme M1 (1,4-beta-N-acetylmuramidase) Cell envelope biogenesis, outer membrane 42518654 Common - hypothetical protein LJ0732 61 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 42519456 Common - ABC transporter ATPase and permease components LJ1582 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42519292 Nonpathogen - Lj928 prophage protein LJ1422 1 None None None 42519468 Common - hypothetical protein LJ1594 89 COG1295 Rbn, Predicted membrane protein Function unknown 42519771 Common gidB glucose-inhibited division protein B LJ0554 191 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 42519155 Nonpathogen - hypothetical protein LJ1230 1 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 42518647 Nonpathogen - hypothetical protein LJ0725 1 None None None 42518640 Common - dipeptidase LJ0718 24 COG4690 PepD, Dipeptidase Amino acid transport and metabolism 42519800 Nonpathogen - hypothetical protein LJ0525 1 None None None 42519102 Common - hypothetical protein LJ1176 15 COG3619 COG3619, Predicted membrane protein Function unknown 42519733 Common nrdI ribonucleotide reductase stimulatory protein LJ0592 37 COG1780 NrdI, Protein involved in ribonucleotide reduction Nucleotide transport and metabolism 42518964 Nonpathogen - hypothetical protein LJ1038 1 None None None 42518366 Common - hypothetical protein LJ0279 6 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 42518620 Common - hypothetical protein LJ0698 42 COG0679 COG0679, Predicted permeases General function prediction only 42519537 Common - hypothetical protein LJ1660 15 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 42518957 Nonpathogen - hypothetical protein LJ1031 1 None None None 42519223 Common - transposase fragment LJ1298 41 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42519108 Common - hypothetical protein LJ1182 74 COG1293 COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP Transcription 42519313 Common - Lj928 prophage terminase large subunit LJ1441 2 None None None 42518528 Common - hypothetical protein LJ0433 8 None None None 42518157 Common - hypothetical protein LJ0071 165 COG1576 COG1576, Uncharacterized conserved protein Function unknown 42518844 Common - two-component system histidine kinase LJ0919 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42519586 Common - hypothetical protein LJ1709 8 None None None 42519039 Common - hypothetical protein LJ1113 46 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 42518666 Common - hypothetical protein LJ0744 120 COG1609 PurR, Transcriptional regulators Transcription 42519804 Common - ABC transporter ATPase and permease components LJ0521 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42519006 Common - pyruvate kinase LJ1080 237 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 42519429 Common - hypothetical protein LJ1556b 101 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 42519047 Common - hypothetical protein LJ1121 10 COG4814 COG4814, Uncharacterized protein with an alpha/beta hydrolase fold General function prediction only 42518403 Nonpathogen - Lj965 prophage protein LJ0313 1 None None None 42518400 Nonpathogen - Lj965 prophage protein LJ0310 1 COG2868 COG2868, Predicted ribosomal protein Translation, ribosomal structure and biogenesis 42518596 Common - DedA LJ0500 164 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 42518344 Common - nitro/flavin reductase LJ0257 62 COG0778 NfnB, Nitroreductase Energy production and conversion 42518225 Common - hypothetical protein LJ0139 143 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 42519331 Nonpathogen - Lj928 prophage protein LJ1459 1 None None None 42519122 Common - penicillin-binding protein 1A LJ1197 201 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 42519730 Nonpathogen - hypothetical protein LJ0595 3 None None None 42518556 Common groES co-chaperonin GroES LJ0460 208 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 42518374 Common lysS lysyl-tRNA synthetase LJ0287 246 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 42519173 Common - ABC transporter ATPase component LJ1248 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 42518138 Common - branched-chain amino acid transporter LJ0052 50 COG1114 BrnQ, Branched-chain amino acid permeases Amino acid transport and metabolism 42519448 Common - ABC transporter solute-binding component LJ1574 158 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 42518637 Common - hypothetical protein LJ0715 7 None None None 42518119 Common - hypothetical protein LJ0034 24 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 42519548 Nonpathogen - hypothetical protein LJ1671 1 None None None 42519561 Nonpathogen - hypothetical protein LJ1684 1 None None None 42518552 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC cellobiose specific LJ0457 16 COG1440 CelA, Phosphotransferase system cellobiose-specific component IIB Carbohydrate transport and metabolism 42518680 Common - trehalose-6-phosphate hydrolase LJ0758 157 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 42518726 Nonpathogen - hypothetical protein LJ0801 1 None None None 42519890 Common prsA peptidylprolyl isomerase LJ1841 46 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 42519075 Nonpathogen - hypothetical protein LJ1149 2 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 42518201 Common - hypothetical protein LJ0115 73 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 42518585 Nonpathogen - hypothetical protein LJ0489 1 None None None 42518472 Nonpathogen - hypothetical protein LJ0378 1 None None None 42519356 Common - riboflavin kinase/FMN adenylyltransferase LJ1484 211 COG0196 RibF, FAD synthase Coenzyme metabolism 42519690 Common - 6-phospho-alpha-glucosidase (maltose-6'-phosphate hydrolase) LJ0635 53 COG1486 CelF, Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases Carbohydrate transport and metabolism 42518336 Nonpathogen - hypothetical protein LJ0249b 1 None None None 42518870 Nonpathogen - hypothetical protein LJ0945 1 None None None 42518990 Common - hypothetical protein LJ1065 177 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42518435 Common rpsC 30S ribosomal protein S3 LJ0345 245 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 42518170 Common - hypothetical protein LJ0084 6 COG1403 McrA, Restriction endonuclease Defense mechanisms 42519600 Common - hypothetical protein LJ1725 9 COG3774 OCH1, Mannosyltransferase OCH1 and related enzymes Cell envelope biogenesis, outer membrane 42518088 Common recF recombination protein F LJ0003 167 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 42518601 Common - hypothetical protein LJ0679 90 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 42518456 Common rplQ 50S ribosomal protein L17 LJ0362 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 42519558 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, probable galactitol specific LJ1681 4 COG3414 SgaB, Phosphotransferase system, galactitol-specific IIB component Carbohydrate transport and metabolism 42518665 Common - oligo-1,6-glucosidase LJ0743 169 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 42518421 Common - ATP-dependent clp protease ATP-binding subunit clpA-like protein LJ0331 229 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 42518706 Common - hypothetical protein LJ0781 3 None None None 42518326 Common - hypothetical protein LJ0240 28 COG1396 HipB, Predicted transcriptional regulators Transcription 42519654 Common - succinate-semialdehyde dehydrogenase LJ0671 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 42519496 Common - penicillin-binding protein 2B LJ1620 185 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 42519234 Common - ABC transporter permease component LJ1310 170 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 42519486 Common - hypothetical protein LJ1612 97 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42518256 Common - hypothetical protein LJ0170 11 COG4975 GlcU, Putative glucose uptake permease Carbohydrate transport and metabolism 42518445 Common rplR 50S ribosomal protein L18 LJ0353 216 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 42519816 Common - hypothetical protein LJ0509 131 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 42518906 Common - cold shock protein LJ0980b 115 COG1278 CspC, Cold shock proteins Transcription 42518307 Nonpathogen - hypothetical protein LJ0222 2 COG4506 COG4506, Uncharacterized protein conserved in bacteria Function unknown 42518500 Common - hypothetical protein LJ0407 135 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 42518181 Common - cardiolipinsynthetase LJ0095 150 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 42519273 Common ldh L-lactate dehydrogenase LJ1403 176 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 42519285 Common - hypothetical protein LJ1415 10 None None None 42519016 Common rpsA 30S ribosomal protein S1 LJ1090 226 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 42518983 Nonpathogen - hypothetical protein LJ1058 1 None None None 42519363 Common - hypothetical protein LJ1491 137 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 42519261 Common aspS aspartyl-tRNA synthetase LJ1391 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42519619 Common - hypothetical protein LJ1744 8 COG4269 COG4269, Predicted membrane protein Function unknown 42518591 Nonpathogen - hypothetical protein LJ0495 4 None None None 42518815 Common - ABC transporter permease component, Spermidine/putrescine LJ0890 183 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 42519827 Nonpathogen - hypothetical protein LJ1778 1 None None None 42518096 Common rplI 50S ribosomal protein L9 LJ0011 198 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 42518426 Common - 30S ribosomal protein S7 LJ0336 249 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 42518911 Common - hypothetical protein LJ0985 7 None None None 42518711 Common - ABC transporter permease component LJ0786 184 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 42519648 Nonpathogen - hypothetical protein LJ1773 1 None None None 42519522 Common - threonyl-tRNA synthetase LJ1645 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42519808 Common - sucrose operon repressor LJ0517 130 COG1609 PurR, Transcriptional regulators Transcription 42519314 Nonpathogen - Lj928 prophage terminase small subunit LJ1442 1 None None None 42519110 Common - carbamoyl phosphate synthase small subunit LJ1185 230 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 42518458 Common - ABC transporter ATPase component LJ0364 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 42519572 Common - hypothetical protein LJ1695 45 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 42518230 Common - hypothetical protein LJ0144 72 COG1737 RpiR, Transcriptional regulators Transcription 42519366 Common - probable protease eep LJ1494 208 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 42519423 Common - hypothetical protein LJ1551 143 COG0781 NusB, Transcription termination factor Transcription 42518785 Common - galactose-1-phosphate uridylyltransferase LJ0860 14 COG4468 GalT, Galactose-1-phosphate uridyltransferase Carbohydrate transport and metabolism 42519100 Common - ATP-dependent DNA helicase RecQ LJ1174 237 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 42519417 Common - DNA repair protein RecN LJ1545 212 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 42518551 Common - hypothetical protein LJ0456 113 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 42518449 Common secY preprotein translocase subunit SecY LJ0356 233 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 42519268 Common - hypothetical protein LJ1398 6 COG5617 COG5617, Predicted integral membrane protein Function unknown 42519507 Common - two-component regulatory system response regulator LJ1631 211 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42519819 Common - hypothetical protein LJ0506 10 COG4687 COG4687, Uncharacterized protein conserved in bacteria Function unknown 42519201 Common carB carbamoyl phosphate synthase large subunit LJ1276 239 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 42518376 Common - Lj965 prophage superinfection immunity protein LJ0289 9 None None None 42519079 Common - probable thiol peroxidase LJ1153 115 COG2077 Tpx, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 42518986 Nonpathogen - hypothetical protein LJ1061 1 None None None 42518769 Common - COMF operon protein 3 LJ0844 38 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 42518409 Nonpathogen - Lj965 prophage major tail protein LJ0319 2 None None None 42519065 Common - hypothetical protein LJ1139 182 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 42518823 Common - hypothetical protein LJ0898 5 COG3595 COG3595, Uncharacterized conserved protein Function unknown 42519410 Common - hypothetical protein LJ1538 137 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 42518239 Nonpathogen - hypothetical protein LJ0153 1 None None None 42519822 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, probable mannose specific LJ0503 89 COG3444 COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB Carbohydrate transport and metabolism 42518184 Common - hypothetical protein LJ0098 178 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 42518690 Common - lactacin F ABC transporter permease component LJ0767 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 42518452 Common rpmJ 50S ribosomal protein L36 LJ0358b 138 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 42518592 Common - hypothetical protein LJ0496 112 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 42518859 Common - F0F1 ATP synthase subunit A LJ0934 195 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 42519144 Common - hypothetical protein LJ1219 99 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 42519195 Common - hypothetical protein LJ1270 14 COG4912 COG4912, Predicted DNA alkylation repair enzyme DNA replication, recombination, and repair 42519445 Nonpathogen - hypothetical protein LJ1571 1 None None None 42518852 Common - hypothetical protein LJ0927 114 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 42519321 Nonpathogen - Lj928 prophage protein LJ1449 1 None None None 42519070 Common - manganese transport protein MntH2 LJ1144 96 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 42518475 Common - hypothetical protein LJ0381 5 COG4639 COG4639, Predicted kinase General function prediction only 42518363 Common - peptidyl-tRNA hydrolase LJ0276 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 42518586 Common - Xaa-Pro dipeptidase LJ0490 247 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 42518249 Common - hypothetical protein LJ0163 25 COG2461 COG2461, Uncharacterized conserved protein Function unknown 42518252 Common - 30S ribosomal protein S14-3 LJ0166 186 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 42518705 Nonpathogen - hypothetical protein LJ0780 1 None None None 42519546 Common - ABC transporter ATPase component LJ1669 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42518715 Common - ABC transporter permease component LJ0790 228 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 42518422 Common rpoB DNA-directed RNA polymerase subunit beta LJ0332 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 42519411 Common - SUN protein LJ1539 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 42518583 Common - hypothetical protein LJ0487 2 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 42518208 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, probable mannose specific LJ0122 66 COG2893 ManX, Phosphotransferase system, mannose/fructose-specific component IIA Carbohydrate transport and metabolism 42519224 Nonpathogen - hypothetical protein LJ1299 2 None None None 42519565 Common - hypothetical protein LJ1688 17 COG3231 Aph, Aminoglycoside phosphotransferase Translation, ribosomal structure and biogenesis 42519433 Nonpathogen - hypothetical protein LJ1560 1 None None None 42519076 Common - excinuclease ATPase subunit LJ1150 239 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 42519359 Common infB translation initiation factor IF-2 LJ1487 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 42519272 Common - hypothetical protein LJ1402 12 COG2966 COG2966, Uncharacterized conserved protein Function unknown 42519255 Common - hypothetical protein LJ1330 79 COG1284 COG1284, Uncharacterized conserved protein Function unknown 42518516 Common - hypothetical protein LJ0421 3 COG5294 COG5294, Uncharacterized protein conserved in bacteria Function unknown 42519633 Common - probable pyridine nucleotide-disulfide oxidoreductase LJ1757 245 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 42518876 Common rpsD 30S ribosomal protein S4 LJ0951 249 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 42519282 Common - conjugated bile salt hydrolase LJ1412 47 COG3049 COG3049, Penicillin V acylase and related amidases Cell envelope biogenesis, outer membrane 42518915 Common - hypothetical protein LJ0989 141 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 42518128 Common - hypothetical protein LJ0042 239 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 42519289 Nonpathogen - Lj928 prophage holin LJ1419 1 None None None 42518564 Common ruvB Holliday junction DNA helicase B LJ0468 242 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 42519660 Common - hypothetical protein LJ0665 3 COG2367 PenP, Beta-lactamase class A Defense mechanisms 42518102 Common - hypothetical protein LJ0017 17 COG4552 Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases General function prediction only 42519718 Nonpathogen - hypothetical protein LJ0607 1 None None None 42518748 Common - hypothetical protein LJ0823 127 COG2357 COG2357, Uncharacterized protein conserved in bacteria Function unknown 42519235 Common - ABC transporter permease component LJ1311 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 42519538 Common - deoxyribose-phosphate aldolase LJ1661 124 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 42519597 Common - hypothetical protein LJ1722 67 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 42518934 Nonpathogen - hypothetical protein LJ1008 1 None None None 42518756 Common - hypothetical protein LJ0831 156 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 42519739 Common - hypothetical protein LJ0586 36 COG2966 COG2966, Uncharacterized conserved protein Function unknown 42518963 Nonpathogen - hypothetical protein LJ1037 1 None None None 42518807 Common - hypothetical protein LJ0882 127 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42519000 Nonpathogen - hypothetical protein LJ1075 1 COG5416 COG5416, Uncharacterized integral membrane protein Function unknown 42518733 Common - hypoxanthine-guanine phosphoribosyltransferase LJ0808 156 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 42518264 Common - aminopeptidase C LJ0178 17 COG3579 PepC, Aminopeptidase C Amino acid transport and metabolism 42518361 Common - L-lactate dehydrogenase LJ0274 173 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 42519182 Common - hypothetical protein LJ1257 9 None None None 42518979 Common - hypothetical protein LJ1054 53 COG2856 COG2856, Predicted Zn peptidase Amino acid transport and metabolism 42519186 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, probable beta-glucoside-specific LJ1261 60 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42519780 Common - probable dipeptidase LJ0545 25 COG4690 PepD, Dipeptidase Amino acid transport and metabolism 42519749 Common - hypothetical protein LJ0576 75 COG0640 ArsR, Predicted transcriptional regulators Transcription 42518841 Common - mannose-6-phosphate isomerase LJ0916 51 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 42518730 Nonpathogen - hypothetical protein LJ0805 1 None None None 42519667 Common - hypothetical protein LJ0658 33 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 42519826 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable cellobiose specific LJ1777 9 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 42518342 Common - hypothetical protein LJ0255 14 None None None 42519557 Common - hypothetical protein LJ1680 4 None None None 42519655 Nonpathogen - hypothetical protein LJ0670 1 None None None 42519035 Common - tRNA (uracil-5-)-methyltransferase Gid LJ1109 194 COG1206 Gid, NAD(FAD)-utilizing enzyme possibly involved in translation Translation, ribosomal structure and biogenesis 42518905 Common ileS isoleucyl-tRNA synthetase LJ0980 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42519641 Nonpathogen - hypothetical protein LJ1765 1 None None None 42518653 Common - arginine/ornithine antiporter LJ0731 148 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42519081 Common - Mg(2+) transport ATPase, P-type 2 LJ1155 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42519208 Common - orotate phosphoribosyltransferase LJ1283 151 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 42518489 Common - hypothetical protein LJ0396 60 COG1316 LytR, Transcriptional regulator Transcription 42518506 Common rplA 50S ribosomal protein L1 LJ0411 248 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 42519333 Nonpathogen - Lj928 prophage protein LJ1461 2 None None None 42518381 Nonpathogen - Lj965 prophage repressor LJ0294 4 COG1813 COG1813, Predicted transcription factor, homolog of eukaryotic MBF1 Transcription 42519033 Common - SMF protein LJ1107 211 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 42519490 Nonpathogen - hypothetical protein LJ1615b 1 None None None 42518793 Common - hypothetical protein LJ0868 54 COG1481 COG1481, Uncharacterized protein conserved in bacteria Function unknown 42519422 Common - methylenetetrahydrofolate dehydrogenase(NADP+)/meth enyltetrahydrofolate cyclohydrolase (folD) LJ1550 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 42519114 Nonpathogen - hypothetical protein LJ1189 1 None None None 42519848 Common - hypothetical protein LJ1799 27 COG3817 COG3817, Predicted membrane protein Function unknown 42519387 Common rpsP 30S ribosomal protein S16 LJ1515 213 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 42519221 Common - ABC transporter ATPase and permease components LJ1296 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42518291 Common ksgA dimethyladenosine transferase LJ0205 247 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 42519627 Common - hypothetical protein LJ1751 3 COG2946 COG2946, Putative phage replication protein RstA DNA replication, recombination, and repair 42519463 Common - hypothetical protein LJ1589 8 COG4292 COG4292, Predicted membrane protein Function unknown 42519404 Common - hypothetical protein LJ1532 27 COG1302 COG1302, Uncharacterized protein conserved in bacteria Function unknown 42518160 Common - hypothetical protein LJ0074 24 COG4721 COG4721, Predicted membrane protein Function unknown 42519665 Nonpathogen - hypothetical protein LJ0660 5 COG3759 COG3759, Predicted membrane protein Function unknown 42518139 Common ubiE ubiquinone/menaquinone biosynthesis methyltransferase LJ0053 222 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 42519129 Common - hypothetical protein LJ1204 23 COG3857 AddB, ATP-dependent nuclease, subunit B DNA replication, recombination, and repair 42519082 Common - hypothetical protein LJ1156 43 COG1846 MarR, Transcriptional regulators Transcription 42519116 Common - hypothetical protein LJ1191 6 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 42519862 Common - ABC transporter ATPase and permease components LJ1813 249 COG4987 CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 42518887 Common - rod shape-determining protein MreB LJ0962 236 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 42519452 Common - hypothetical protein LJ1578 12 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42518275 Common - hypothetical protein LJ0189 122 COG2188 PhnF, Transcriptional regulators Transcription 42519610 Common - hypothetical protein LJ1735 162 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42518417 Nonpathogen - Lj965 prophage protein LJ0327 1 None None None 42519497 Common - hypothetical protein LJ1621 7 COG4485 COG4485, Predicted membrane protein Function unknown 42518247 Nonpathogen - hypothetical protein LJ0161 1 None None None 42518218 Common - phosphate/phosphonate ABC transporter permease component LJ0132 141 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 42519503 Common - hypothetical protein LJ1627 209 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 42519357 Common - tRNA pseudouridine synthase B LJ1485 244 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 42518878 Common - NifS/IcsS protein-like protein LJ0953 236 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 42519124 Common - hypothetical protein LJ1199 23 COG3935 DnaD, Putative primosome component and related proteins DNA replication, recombination, and repair 42519348 Common - hypothetical protein LJ1476 16 COG3764 SrtA, Sortase (surface protein transpeptidase) Cell envelope biogenesis, outer membrane 42518787 Common - probable phosphomannomutase LJ0862 226 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 42519002 Common - hypothetical protein LJ1076 124 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 42518174 Common - 3-methyladenine DNA glycosylase LJ0088 81 COG2094 Mpg, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 42518616 Common - hypothetical protein LJ0694 80 COG1956 COG1956, GAF domain-containing protein Signal transduction mechanisms 42519300 Common - Lj928 prophage protein LJ1428 5 None None None 42518311 Common - xanthine/uracil permease LJ0226 135 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 42519869 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, probable beta-glucoside specific LJ1820 60 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42519375 Common - hypothetical protein LJ1503 147 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 42519853 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable galactitol specific LJ1804 19 COG3775 GatC, Phosphotransferase system, galactitol-specific IIC component Carbohydrate transport and metabolism 42519253 Common - L-serine dehydratase alpha subunit LJ1328 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 42518673 Common - ABC transporter ATPase and permease components LJ0751 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42519841 Common - cation-transporting ATPase LJ1792 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 42518575 Common - DNA mismatch repair protein MutS LJ0479 200 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 42518396 Nonpathogen - Lj965 prophage protein LJ0306 1 None None None 42518263 Common - hypothetical protein LJ0177 58 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 42518193 Nonpathogen - hypothetical protein LJ0107 2 None None None 42519383 Common - signal peptidase I LJ1511 183 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 42518766 Common - hypothetical protein LJ0841 228 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 42519672 Common - dipeptidase LJ0653 26 COG4690 PepD, Dipeptidase Amino acid transport and metabolism 42519145 Nonpathogen - hypothetical protein LJ1220 1 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 42519473 Common - transposase LJ1599 40 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 42518932 Common - 30S ribosomal protein S15P/S13E LJ1006 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 42518817 Common - hypothetical protein LJ0892 67 COG1624 COG1624, Uncharacterized conserved protein Function unknown 42519754 Common - fructose-1-phosphate kinase LJ0571 106 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 42518309 Common - CTP synthetase LJ0224 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 42518540 Common - hypothetical protein LJ0445 22 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 42518258 Common - hypothetical protein LJ0172 61 COG1316 LytR, Transcriptional regulator Transcription 42519830 Common - DltD precursor LJ1781 12 COG3966 DltD, Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) Cell envelope biogenesis, outer membrane 42518780 Common - beta-galactosidase large subunit LJ0855 69 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 42518351 Common - hypothetical protein LJ0264 55 COG2984 COG2984, ABC-type uncharacterized transport system, periplasmic component General function prediction only 42518525 Common - DNA replication intiation control protein YabA LJ0430 15 COG4467 COG4467, Uncharacterized protein conserved in bacteria Function unknown 42518821 Nonpathogen - hypothetical protein LJ0896 3 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 42519488 Common - glutamine synthetase LJ1614 227 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 42519168 Common - ABC transporter ATPase and permease components LJ1243 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42519238 Nonpathogen - hypothetical protein LJ1314 1 None None None 42519839 Nonpathogen - hypothetical protein LJ1790 1 None None None 42519046 Common - hypothetical protein LJ1120 204 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 42518810 Common - hypothetical protein LJ0885 158 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 42518832 Nonpathogen - hypothetical protein LJ0907 1 COG4537 ComGC, Competence protein ComGC Intracellular trafficking and secretion 42519728 Common - hypothetical protein LJ0597 107 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 42519873 Common - deoxyadenosine kinase LJ1824 40 COG1428 COG1428, Deoxynucleoside kinases Nucleotide transport and metabolism 42519290 Nonpathogen - Lj928 prophage protein LJ1420 1 None None None 42519191 Common - transketolase LJ1266 220 COG3959 COG3959, Transketolase, N-terminal subunit Carbohydrate transport and metabolism 42518944 Common - hypothetical protein LJ1018 77 COG2761 FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 42519214 Nonpathogen - hypothetical protein LJ1289 1 None None None 42519607 Common - hypothetical protein LJ1732 90 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 42519617 Common - L-2-hydroxyisocaproate dehydrogenase LJ1742 147 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 42518598 Common - hypothetical protein LJ0502 225 COG1098 VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) Translation, ribosomal structure and biogenesis 42518549 Common - ABC transporter ATPase component LJ0454 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42519213 Common - hypothetical protein LJ1288 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 42519014 Common - hypothetical protein LJ1088 21 COG3601 COG3601, Predicted membrane protein Function unknown 42519027 Common - hemolysin-like protein LJ1101 116 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 42518142 Common - conjugated bile salt hydrolase LJ0056 41 COG3049 COG3049, Penicillin V acylase and related amidases Cell envelope biogenesis, outer membrane 42519523 Common - primosomal protein DnaI LJ1646 53 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 42518207 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, probable mannose specific LJ0121 39 COG3716 ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID Carbohydrate transport and metabolism 42518300 Common - beta-phosphoglucomutase LJ0214 136 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 42518729 Common - hypothetical protein LJ0804 60 COG0778 NfnB, Nitroreductase Energy production and conversion 42519245 Common - DNA repair protein RecO LJ1321 42 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 42518220 Nonpathogen - hypothetical protein LJ0134 2 None None None 42519628 Common - hypothetical protein LJ1752 11 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 42519711 Common - cation-transporting ATPase LJ0614 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42518608 Common - arginyl-tRNA synthetase LJ0686 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42518988 Nonpathogen - hypothetical protein LJ1063 1 None None None 42518501 Common - hypothetical protein LJ0408 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 42519785 Common - ABC transporter permease component LJ0540 40 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 42518710 Common - hypothetical protein LJ0785 81 COG4667 COG4667, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 42519136 Common - major facilitator superfamily permease LJ1211 62 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 42518669 Common - major facilitator superfamily permease LJ0747 97 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42518465 Common - hypothetical protein LJ0371 15 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 42518251 Common - hypothetical protein LJ0165 7 COG1598 COG1598, Uncharacterized conserved protein Function unknown 42519092 Common - ABC transporter ATPase component LJ1166 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42519391 Common - signal recognition particle receptor FtsY LJ1519 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 42518894 Common - penicillin-binding protein 2B LJ0969 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 42519761 Common - two-component system histidine kinase LJ0564 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42518282 Nonpathogen - hypothetical protein LJ0196 1 None None None 42518678 Common - glutamine ABC transporter permease component LJ0756 178 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 42519685 Common mscL large-conductance mechanosensitive channel LJ0640 144 COG1970 MscL, Large-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 42518454 Common - 30S ribosomal protein S11 LJ0360 248 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 42518438 Common rpsQ 30S ribosomal protein S17 LJ0347 213 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 42519870 Common - hypothetical protein LJ1821 126 COG0730 COG0730, Predicted permeases General function prediction only 42519657 Common - hypothetical protein LJ0668 91 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42518538 Common - adenylosuccinate lyase LJ0443 237 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 42518477 Common - hypothetical protein LJ0383 75 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42519877 Common - hypothetical protein LJ1828 133 COG0789 SoxR, Predicted transcriptional regulators Transcription 42519824 Common - ATP-dependent clp protease ATP-binding subunit clpE LJ1775 221 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 42519197 Common - phosphoenolpyruvate carboxylase LJ1272 115 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 42518970 Common - hypothetical protein LJ1045 16 COG2856 COG2856, Predicted Zn peptidase Amino acid transport and metabolism 42519563 Common - hypothetical protein LJ1686 4 None None None 42519296 Nonpathogen - Lj928 prophage protein LJ1425c 2 None None None 42518241 Common - hypothetical protein LJ0155 58 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 42519704 Common - hypothetical protein LJ0621 46 COG5099 COG5099, RNA-binding protein of the Puf family, translational repressor Translation, ribosomal structure and biogenesis 42518939 Common - hypothetical protein LJ1013 130 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 42519443 Common - hypothetical protein LJ1569 141 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 42519476 Nonpathogen - hypothetical protein LJ1602 1 None None None 42519323 Nonpathogen - Lj928 prophage recombination protein LJ1451 1 None None None 42519864 Common - hypothetical protein LJ1815 87 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 42518122 Common - exodeoxyribonuclease LJ0036 195 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 42519511 Common - hypothetical protein LJ1635 43 COG1713 COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism Coenzyme metabolism 42518684 Nonpathogen - hypothetical protein LJ0762 1 None None None 42519851 Nonpathogen - hypothetical protein LJ1802 1 None None None 42518484 Common - hypothetical protein LJ0390 3 None None None 42519549 Nonpathogen - hypothetical protein LJ1672 1 None None None 42519846 Nonpathogen - hypothetical protein LJ1797 1 None None None 42519280 Common - hypothetical protein LJ1410 6 None None None 42519581 Common - ABC transporter ATPase component LJ1704 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 42519901 Common - pyruvate oxidase LJ1853 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 42518903 Common - hypothetical protein LJ0978 31 COG2302 COG2302, Uncharacterized conserved protein, contains S4-like domain Function unknown 42518949 Common - putative tyrosine-protein kinase LJ1023 181 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 42519650 Common - hypothetical protein LJ0675 34 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 42518562 Common - DNA mismatch repair protein MutL LJ0466 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 42519481 Common - hydroxymethylglutaryl-CoA synthase LJ1607 89 COG3425 PksG, 3-hydroxy-3-methylglutaryl CoA synthase Lipid metabolism 42519891 Common - amino acid transporter LJ1842 42 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42519814 Common - asparagine synthetase AsnA LJ0511 31 COG2502 AsnA, Asparagine synthetase A Amino acid transport and metabolism 42518092 Common - single-strand binding protein LJ0007 214 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 42518254 Common - bactoprenol glucosyl transferase LJ0168 186 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42519278 Common - probable D-methionine-binding lipoprotein MetQ precursor LJ1408 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 42518580 Common - hypothetical protein LJ0484 98 None None None 42519271 Common - L-asparaginase LJ1401 148 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 42518171 Nonpathogen - hypothetical protein LJ0085 1 None None None 42518433 Common rpsS 30S ribosomal protein S19 LJ0343 241 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 42519072 Nonpathogen - hypothetical protein LJ1146 1 None None None 42519820 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIID probable mannose specific LJ0505 41 COG3716 ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID Carbohydrate transport and metabolism 42518378 Common - Lj965 prophage protein LJ0291 6 None None None 42518180 Nonpathogen - hypothetical protein LJ0094 1 None None None 42519636 Common - hypothetical protein LJ1760 191 COG1201 Lhr, Lhr-like helicases General function prediction only 42519491 Common - hypothetical protein LJ1616 34 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 42518332 Common - hypothetical protein LJ0246 9 None None None 42518345 Common - dipeptidase LJ0258 23 COG4690 PepD, Dipeptidase Amino acid transport and metabolism 42518773 Nonpathogen - hypothetical protein LJ0848 1 None None None 42519799 Common - hypothetical protein LJ0526 15 COG0710 AroD, 3-dehydroquinate dehydratase Amino acid transport and metabolism 42518270 Common celD cellobiose phosphotransferase system IIC component LJ0184 38 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 42518767 Common - hypothetical protein LJ0842 132 COG1739 COG1739, Uncharacterized conserved protein Function unknown 42519164 Common - hypothetical protein LJ1239 21 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 42518862 Common - ATP synthase delta chain LJ0937 196 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 42519316 Nonpathogen - Lj928 prophage protein LJ1444 1 None None None 42519662 Common - hypothetical protein LJ0663 93 COG2153 ElaA, Predicted acyltransferase General function prediction only 42518419 Common - Lj965 prophage lysin LJ0329 19 COG3757 Acm, Lyzozyme M1 (1,4-beta-N-acetylmuramidase) Cell envelope biogenesis, outer membrane 42518491 Common - DNA repair protein RadA LJ0398 214 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 42519436 Common - hypothetical protein LJ1562 29 COG2240 PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase Coenzyme metabolism 42518498 Common - gluconokinase LJ0405 180 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 42519368 Common - undecaprenyl pyrophosphate synthetase LJ1496 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 42519370 Common - uridylate kinase LJ1498 245 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 42519536 Common - two-component system response regulator LJ1659 212 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 42518639 Common - hypothetical protein LJ0717 120 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42518992 Nonpathogen - hypothetical protein LJ1067 1 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 42519021 Common - hypothetical protein LJ1095 4 None None None 42518440 Common rplX 50S ribosomal protein L24 LJ0349 211 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 42518594 Common - hypothetical protein LJ0498 93 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 42518185 Common - hypothetical protein LJ0099 11 COG4086 COG4086, Predicted secreted protein Function unknown 42519544 Common - hypothetical protein LJ1667 178 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 42518410 Nonpathogen - Lj965 prophage protein LJ0320 2 None None None 42518731 Common - hypothetical protein LJ0806 62 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 42518340 Nonpathogen - hypothetical protein LJ0253 1 None None None 42519169 Common - hypothetical protein LJ1244 46 COG0778 NfnB, Nitroreductase Energy production and conversion 42519184 Common - hypothetical protein LJ1259 5 None None None 42519514 Common - hypothetical protein LJ1638 44 COG2179 COG2179, Predicted hydrolase of the HAD superfamily General function prediction only 42518151 Common - two-component regulatory system response regulator LJ0065 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42519782 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, probable beta-glucosides specific LJ0543 60 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42519203 Common pyrC dihydroorotase LJ1278 216 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 42519413 Common - primosomal protein N' LJ1541 213 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 42518977 Common - dTDP-4-dehydrorhamnose reductase LJ1052 191 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 42519509 Common - hypothetical protein LJ1633 24 COG1323 COG1323, Predicted nucleotidyltransferase General function prediction only 42519669 Common - ABC transporter permease component LJ0656 133 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 42519154 Nonpathogen - hypothetical protein LJ1229 2 None None None 42518315 Common - arsenical resistance operon repressor LJ0230 163 COG0640 ArsR, Predicted transcriptional regulators Transcription 42519176 Common - glycerate kinase LJ1251 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 42518649 Common - hypothetical protein LJ0727 73 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 42519335 Nonpathogen - Lj928 prophage protein LJ1463 1 None None None 42518696 Common - transposase LJ0772 64 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 42519037 Common - ATP-dependent protease peptidase subunit LJ1111 150 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 42519554 Common - hypothetical protein LJ1677 13 COG3679 COG3679, Uncharacterized conserved protein Function unknown 42518508 Common - ABC transporter ATPase component LJ0413 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 42519057 Common - hypothetical protein LJ1131 40 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 42519352 Common - GrpE LJ1480 229 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 42519894 Common - hypothetical protein LJ1845 15 COG0456 RimI, Acetyltransferases General function prediction only 42518954 Common - hypothetical protein LJ1028 169 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 42518163 Common - LemA-like protein LJ0077 130 COG1704 LemA, Uncharacterized conserved protein Function unknown 42519643 Common - hypothetical protein LJ1767 92 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 42519635 Common - UDP-glucose 4-epimerase LJ1759 233 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 42518339 Common - methylated DNA-protein cysteine methyltransferase LJ0252 220 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 42519231 Common - transposase LJ1306 40 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 42518261 Common - tyrosyl-tRNA synthetase LJ0175 218 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42519790 Common - hypothetical protein LJ0535 78 COG3022 COG3022, Uncharacterized protein conserved in bacteria Function unknown 42518407 Nonpathogen - Lj965 prophage protein LJ0317 2 None None None 42518388 Common - Lj965 prophage protein LJ0298 4 None None None 42519265 Nonpathogen - hypothetical protein LJ1395 2 None None None 42519559 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable galactitol specific LJ1682 19 COG3775 GatC, Phosphotransferase system, galactitol-specific IIC component Carbohydrate transport and metabolism 42518651 Common - hypothetical protein LJ0729 70 COG0390 COG0390, ABC-type uncharacterized transport system, permease component General function prediction only 42518404 Common - Lj965 prophage major head protein LJ0314 4 None None None 42518874 Common - recombination factor protein RarA LJ0949 247 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 42519737 Nonpathogen - hypothetical protein LJ0588 1 None None None 42519428 Common rplU 50S ribosomal protein L21 LJ1556 179 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 42518514 Common - hypothetical protein LJ0419 133 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 42518323 Nonpathogen - hypothetical protein LJ0237 1 None None None 42519042 Nonpathogen - hypothetical protein LJ1116 1 None None None 42518917 Common - hypothetical protein LJ0991 164 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 42519151 Common - hypothetical protein LJ1226 15 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 42518111 Common - ABC transporter ATPase and permease components LJ0026 248 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42519237 Common - hypothetical protein LJ1313 55 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42518762 Common - hypothetical protein LJ0837 74 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 42519459 Common - x-prolyl-dipeptidyl aminopeptidase LJ1585 18 COG2936 COG2936, Predicted acyl esterases General function prediction only 42518796 Common - hypothetical protein LJ0871 28 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 42518176 Common - hypothetical protein LJ0090 25 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 42519736 Common - hypothetical protein LJ0589 36 COG2337 MazF, Growth inhibitor Signal transduction mechanisms 42519302 Nonpathogen - Lj928 prophage major tail protein LJ1430 3 None None None 42518661 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, probable sorbose specific LJ0739 40 COG3444 COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB Carbohydrate transport and metabolism 42518394 Common - Lj965 prophage protein LJ0304 12 None None None 42519004 Nonpathogen - hypothetical protein LJ1078 1 None None None 42519267 Common - EbsC LJ1397 97 COG2606 EbsC, Uncharacterized conserved protein Function unknown 42518671 Nonpathogen - hypothetical protein LJ0749 4 COG1846 MarR, Transcriptional regulators Transcription 42518313 Common - hypothetical protein LJ0228 4 None None None 42518997 Common - hypothetical protein LJ1072 96 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 42518850 Common - hypothetical protein LJ0925 200 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42518606 Common - hypothetical protein LJ0684 219 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 42518722 Common - ribokinase LJ0797 211 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 42518969 Nonpathogen - hypothetical protein LJ1043 1 None None None 42518398 Common - Lj965 prophage terminase large subunit LJ0308 12 COG1783 XtmB, Phage terminase large subunit General function prediction only 42518195 Common - hypothetical protein LJ0109 3 None None None 42519420 Common - exonuclease VII small subunit LJ1548 38 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 42519381 Common - hypothetical protein LJ1509 144 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 42519140 Common - FolD bifunctional protein LJ1215 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 42518161 Common - hypothetical protein LJ0075 19 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 42519756 Common - alpha-glucosidase LJ0569 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 42519147 Nonpathogen - hypothetical protein LJ1222 1 None None None 42518764 Common recA recombinase A LJ0839 240 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 42518819 Common - phosphoglucomutase/phosphomannomutase LJ0894 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 42518687 Common - lactacin F two-component system histidine kinase LJ0764 18 COG2972 COG2972, Predicted signal transduction protein with a C-terminal ATPase domain Signal transduction mechanisms 42518782 Common - lactose permease LJ0857 85 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 42519683 Common - transposase LJ0642 64 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 42519018 Common - DNA-binding protein HU LJ1092 212 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 42518942 Nonpathogen - hypothetical protein LJ1016 1 None None None 42519674 Common - 2,5-diketo-D-gluconate reductase LJ0651 140 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 42519393 Common - ribonuclease III LJ1521 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 42519875 Common - glycolate oxidase LJ1826 152 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 42519726 Common - hypothetical protein LJ0599 217 COG2262 HflX, GTPases General function prediction only 42519109 Common carB carbamoyl phosphate synthase large subunit LJ1184 230 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 42519319 Nonpathogen - Lj928 prophage protein LJ1447 1 None None None 42519248 Common - PHOH-like protein LJ1324 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 42519385 Common - tRNA (Guanine-N1)-methyltransferase LJ1513 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 42518759 Common - hypothetical protein LJ0834 19 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 42518896 Common murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase LJ0971 210 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 42519337 Common - Lj928 prophage integrase LJ1465 144 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 42519837 Nonpathogen - hypothetical protein LJ1788 1 None None None 42518614 Common - transposase LJ0692 71 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 42519505 Common - hypothetical protein LJ1629 177 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 42519304 Nonpathogen - Lj928 prophage protein LJ1432 3 None None None 42519188 Common - hypothetical protein LJ1263 13 None None None 42518775 Common - prolipoprotein diacylglyceryl transferase LJ0850 176 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 42518216 Common - phosphate/phosphonate ABC transporter ATPase component LJ0130 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 42518233 Common - endopeptidase O LJ0147 63 COG3590 PepO, Predicted metalloendopeptidase Posttranslational modification, protein turnover, chaperones 42518824 Nonpathogen - hypothetical protein LJ0899 1 None None None 42519465 Common - ABC transporter permease component LJ1591 160 COG1732 OpuBC, Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) Cell envelope biogenesis, outer membrane 42519595 Common - NAD-dependent DNA ligase LJ1720 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 42518928 Nonpathogen - hypothetical protein LJ1002 1 COG0658 ComEC, Predicted membrane metal-binding protein General function prediction only 42519574 Nonpathogen - hypothetical protein LJ1697 2 None None None 42519029 Common - hypothetical protein LJ1103 12 COG4479 COG4479, Uncharacterized protein conserved in bacteria Function unknown 42518460 Common truA tRNA pseudouridine synthase A LJ0366 237 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 42518885 Common - hypothetical protein LJ0960 138 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 42518573 Common - hypothetical protein LJ0477 13 COG3906 COG3906, Uncharacterized protein conserved in bacteria Function unknown 42518149 Nonpathogen - hypothetical protein LJ0063 1 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 42518703 Nonpathogen - hypothetical protein LJ0778 1 None None None 42519858 Common - ABC transporter permease component LJ1809 25 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 42518302 Common - hypothetical protein LJ0216 74 COG2182 MalE, Maltose-binding periplasmic proteins/domains Carbohydrate transport and metabolism 42519645 Common - hypothetical protein LJ1770 25 COG0392 COG0392, Predicted integral membrane protein Function unknown 42519013 Nonpathogen - hypothetical protein LJ1087 1 None None None 42518086 Common - DNA polymerase III, beta chain LJ0002 215 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 42519247 Common - hypothetical protein LJ1323 203 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 42519139 Common - high affinity ribose transport protein rbsD LJ1214 43 COG1869 RbsD, ABC-type ribose transport system, auxiliary component Carbohydrate transport and metabolism 42519796 Nonpathogen - hypothetical protein LJ0529 5 COG2367 PenP, Beta-lactamase class A Defense mechanisms 42519051 Common - alpha-acetolactate decarboxylase LJ1125 40 COG3527 AlsD, Alpha-acetolactate decarboxylase Secondary metabolites biosynthesis, transport, and catabolism 42519707 Common - hypothetical protein LJ0618 22 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 42519454 Nonpathogen - hypothetical protein LJ1580 1 None None None 42519613 Common - glycerol-3-phosphate cytidylyltransferase LJ1738 111 COG0615 TagD, Cytidylyltransferase Cell envelope biogenesis, outer membrane / Lipid metabolism 42518334 Common - hypothetical protein LJ0248 4 None None None 42518789 Common - excinuclease ABC subunit A LJ0864 240 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 42518857 Common - hypothetical protein LJ0932 238 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 42519525 Common - hypothetical protein LJ1648 176 COG1327 COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Transcription 42518482 Common - preprotein translocase subunit SecA LJ0388 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 42519084 Common - probable reductase LJ1158 176 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 42519748 Common - ABC transporter solute-binding component LJ0577 140 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 42519396 Common - oligopeptide ABC transporter permease component LJ1524 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 42518280 Common - beta-glucosidase LJ0194 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 42518144 Common - bile salt transporter LJ0058 17 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 42518898 Common - Div1B-like protein LJ0973 12 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 42519689 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIBC, probable arbutin specific LJ0636 51 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42519763 Common - ABC transporter ATPase and permease components LJ0562 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42519134 Common - ABC transporter ATPase and permease components LJ1209 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42518503 Nonpathogen secE preprotein translocase subunit SecE LJ0408c 1 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 42519766 Common - translation-associated GTPase LJ0559 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 42518205 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, probable mannose specific LJ0119 41 COG3444 COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB Carbohydrate transport and metabolism 42518467 Common - hypothetical protein LJ0373 12 None None None 42519166 Common - hypothetical protein LJ1241 18 COG3041 COG3041, Uncharacterized protein conserved in bacteria Function unknown 42518536 Common - guanosine 5'-monophosphate oxidoreductase LJ0441 233 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 42518523 Common - hypothetical protein LJ0428 20 COG3870 COG3870, Uncharacterized protein conserved in bacteria Function unknown 42518215 Common - hypothetical protein LJ0129 93 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 42518229 Nonpathogen - hypothetical protein LJ0143 1 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42519406 Common - hypothetical protein LJ1534 28 COG1564 THI80, Thiamine pyrophosphokinase Coenzyme metabolism 42519621 Common - surface protein, aggregation promoting factor LJ1746 6 None None None 42519199 Common - hypothetical protein LJ1274 88 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 42518834 Nonpathogen - hypothetical protein LJ0909 1 None None None 42519048 Common - ABC transporter ATPase component LJ1122 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42518358 Common - acyl carrier protein synthase LJ0271 135 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 42519884 Common - CopAB ATPase metal-fist type repressor LJ1835 42 COG3682 COG3682, Predicted transcriptional regulator Transcription 42518864 Common - F0F1 ATP synthase subunit gamma LJ0939 205 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 42519609 Common - nicotinate phosphoribosyltransferase LJ1734 118 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 42519126 Common - hypothetical protein LJ1201 6 COG5353 COG5353, Uncharacterized protein conserved in bacteria Function unknown 42519778 Common - hypothetical protein LJ0547 8 COG1309 AcrR, Transcriptional regulator Transcription 42518727 Common - hypothetical protein LJ0802 114 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 42519228 Common - peptidase T LJ1303 60 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 42518837 Common - acetate kinase LJ0912 162 COG0282 ackA, Acetate kinase Energy production and conversion 42518133 Common - hypothetical protein LJ0047 8 None None None 42518547 Nonpathogen - hypothetical protein LJ0452 1 None None None 42518094 Common - hypothetical protein LJ0009 37 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 42518273 Nonpathogen - hypothetical protein LJ0187 1 None None None 42518624 Common - major facilitator superfamily permease LJ0702 176 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42519904 Common - stage III sporulation protein J precursor LJ1856 213 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 42519058 Common - two-component system response regulator LJ1132 222 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 42518166 Nonpathogen - hypothetical protein LJ0080 1 None None None 42519211 Common - hypothetical protein LJ1286 95 COG2949 SanA, Uncharacterized membrane protein Function unknown 42519605 Common - ABC transporter ATPase and permease components LJ1730 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42519787 Common - hypothetical protein LJ0538 151 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 42518512 Common - hypothetical protein LJ0417 84 None None None 42518568 Common - hypothetical protein LJ0472 93 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 42518129 Common - inosine-5-monophosphate dehydrogenase LJ0043 235 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 42518920 Nonpathogen - hypothetical protein LJ0994 1 None None None 42518385 Nonpathogen - Lj928 prophage protein LJ1452b 1 None None None 42519066 Common - selenocysteine lyase LJ1140 239 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 42518657 Common - hypothetical protein LJ0735 108 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 42518952 Common - hypothetical protein LJ1026 14 None None None 42519250 Common rpsU 30S ribosomal protein S21 LJ1325 124 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 42519805 Common - hypothetical protein LJ0520 116 COG2110 COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 General function prediction only 42518257 Common - hypothetical protein LJ0171 45 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 42519450 Common - major facilitator superfamily permease LJ1576 225 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42518799 Common tpiA triosephosphate isomerase LJ0874 217 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 42518961 Common - hypothetical protein LJ1035 6 None None None 42519457 Common - hypothetical protein LJ1583 98 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42519330 Nonpathogen - Lj928 prophage protein LJ1458 2 None None None 42518330 Nonpathogen - hypothetical protein LJ0244 1 None None None 42519466 Common - ABC transporter ATPase component LJ1592 249 COG1125 OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components Amino acid transport and metabolism 42518930 Common - hypothetical protein LJ1004 29 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 42518402 Common - Lj965 prophage scaffold protein LJ0312 6 None None None 42519373 Common - hypothetical protein LJ1501 119 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 42518865 Common - F0F1 ATP synthase subunit beta LJ0940 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 42518289 Common - hypothetical protein LJ0203 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 42519895 Common - major facilitator superfamily permease LJ1846 57 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42518392 Common - Lj965 prophage antirepressor LJ0302 38 COG3617 COG3617, Prophage antirepressor Transcription 42518343 Nonpathogen - hypothetical protein LJ0256 10 None None None 42518958 Common - UDP-galactopyranose mutase LJ1032 61 COG0562 Glf, UDP-galactopyranose mutase Cell envelope biogenesis, outer membrane 42518168 Common - hypothetical protein LJ0082 21 COG3405 CelA, Endoglucanase Y Carbohydrate transport and metabolism 42519156 Nonpathogen - hypothetical protein LJ1231 1 None None None 42518842 Nonpathogen - hypothetical protein LJ0917 1 None None None 42518612 Common - hypothetical protein LJ0690 104 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 42518113 Common - hypothetical protein LJ0028 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 42518178 Common - methylated DNA-protein cysteine methyltransferase ribonuclease-like domain LJ0092 4 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 42518471 Common - hypothetical protein LJ0377 199 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 42518643 Common - hypothetical protein LJ0721 179 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42519569 Common - hypothetical protein LJ1692 40 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 42519096 Common - DNA topoisomerase IV subunit B LJ1170 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 42518845 Common - hypothetical protein LJ0920 13 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 42519745 Common - L-lactate permease LJ0580 105 COG1620 LldP, L-lactate permease Energy production and conversion 42519036 Common - probable integrase/recombinase CodV LJ1110 228 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 42519614 Common - hypothetical protein LJ1739 150 COG2188 PhnF, Transcriptional regulators Transcription 42518891 Common - hypothetical protein LJ0966 142 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 42519765 Common - hypothetical protein LJ0560 7 COG4858 COG4858, Uncharacterized membrane-bound protein conserved in bacteria Function unknown 42519734 Common nrdF ribonucleotide-diphosphate reductase subunit beta LJ0591 49 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 42518124 Common - hypothetical protein LJ0038 8 COG4814 COG4814, Uncharacterized protein with an alpha/beta hydrolase fold General function prediction only 42519731 Common - hypothetical protein LJ0594 2 COG1770 PtrB, Protease II Amino acid transport and metabolism 42518738 Common - transposase LJ0813 40 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 42519263 Common - D-tyrosyl-tRNA deacylase LJ1393 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 42518561 Common - DNA mismatch repair protein LJ0465 203 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 42519757 Common - ABC transporter permease component LJ0568 42 COG1668 NatB, ABC-type Na+ efflux pump, permease component Energy production and conversion / Inorganic ion transport and metabolism 42519844 Common - ABC transporter ATPase and permease components LJ1795 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42519259 Common - methionine sulfoxide reductase B LJ1389 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 42519725 Common - ABC transporter ATPase component LJ0600 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42518951 Common - undecaprenyl-phosphate galactosephosphotransferase LJ1025 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 42518158 Common - ABC transporter permease component LJ0072 7 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 42518941 Common - hypothetical protein LJ1015 75 COG2761 FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 42518699 Common - lactacin F transporter auxillary protein LJ0775 3 None None None 42518337 Common - hypothetical protein LJ0250 191 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 42518099 Common - hypothetical protein LJ0014 5 None None None 42518429 Common rplC 50S ribosomal protein L3 LJ0339 235 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 42519286 Common eno phosphopyruvate hydratase LJ1416 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 42519362 Common nusA transcription elongation factor NusA LJ1490 230 COG0195 NusA, Transcription elongation factor Transcription 42518728 Common - putative phosphoketolase LJ0803 65 COG3957 COG3957, Phosphoketolase Carbohydrate transport and metabolism 42518555 Nonpathogen - hypothetical protein LJ0459b 1 None None None 42519262 Common hisS histidyl-tRNA synthetase LJ1392 247 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42518871 Common - hypothetical protein LJ0946 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 42518982 Common - probable protease htpX-like protein LJ1057 191 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 42519695 Nonpathogen - hypothetical protein LJ0630 1 None None None 42518714 Common - ABC transporter solute-binding component LJ0789 159 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 42518535 Common - hypothetical protein LJ0440 159 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 42519638 Nonpathogen - hypothetical protein LJ1762 2 None None None 42519483 Common - acetyl-CoA acetyltransferase LJ1609 181 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 42519552 Common - hypothetical protein LJ1675 65 COG4717 COG4717, Uncharacterized conserved protein Function unknown 42518597 Common - hypothetical protein LJ0501 245 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 42518798 Common pgk phosphoglycerate kinase LJ0873 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 42518776 Common - glycerol-3-phosphate dehydrogenase NAD(P)+ LJ0851 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 42518304 Common - multiple sugar ABC transporter permease component LJ0219 160 COG3833 MalG, ABC-type maltose transport systems, permease component Carbohydrate transport and metabolism 42518509 Common - ABC transporter solute-binding component LJ0414 181 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42518107 Common - major facilitator superfamily permease LJ0022 11 None None None 42518442 Common rpsN 30S ribosomal protein S14 LJ0350b 202 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 42518709 Common - hypothetical protein LJ0784 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42518412 Common - Lj965 prophage putative minor tail protein LJ0322 78 COG3953 COG3953, SLT domain proteins General function prediction only 42518754 Common - hypothetical protein LJ0829 4 COG3731 SrlB, Phosphotransferase system sorbitol-specific component IIA Carbohydrate transport and metabolism 42519101 Common - hypothetical protein LJ1175 201 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 42519355 Common - ABC transporter ATPase component LJ1483 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42519815 Common - hypothetical protein LJ0510 39 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 42519023 Nonpathogen - hypothetical protein LJ1097 1 None None None 42519470 Common - hypothetical protein LJ1596 57 COG0716 FldA, Flavodoxins Energy production and conversion 42518946 Nonpathogen - hypothetical protein LJ1020 1 None None None 42519542 Common - thioredoxin LJ1665 87 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 42518901 Common - hypothetical protein LJ0976 56 COG1799 COG1799, Uncharacterized protein conserved in bacteria Function unknown 42518937 Common clpX ATP-dependent protease ATP-binding subunit LJ1011 223 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 42519760 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase LJ0565 207 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 42518494 Common - hypothetical protein LJ0401 37 COG1939 COG1939, Uncharacterized protein conserved in bacteria Function unknown 42519438 Common - hypothetical protein LJ1564 6 None None None 42518436 Common rplP 50S ribosomal protein L16 LJ0346 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 42518572 Common - hypothetical protein LJ0476 190 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 42519833 Common - D-alanine--D-alanyl carrier protein ligase LJ1784 216 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 42519325 Nonpathogen - Lj928 prophage protein with HTH domain LJ1453 1 None None None 42519801 Common - hypothetical protein LJ0524 43 None None None 42518677 Common - glutamine ABC transporter permease component LJ0755 177 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 42519442 Common - hypothetical protein LJ1568 5 None None None 42518420 Nonpathogen - Lj965 prophage protein LJ0330 1 None None None 42519583 Common - hypothetical protein LJ1706 115 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 42519449 Common - hypothetical protein LJ1575 13 COG0789 SoxR, Predicted transcriptional regulators Transcription 42518686 Nonpathogen - lactacin F two-component system inducer peptide precursor LJ0763b 1 None None None 42518884 Common - hypothetical protein LJ0959 217 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 42518455 Common - DNA-directed RNA polymerase subunit alpha LJ0361 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 42518996 Common obgE GTPase ObgE LJ1071 248 COG0536 Obg, Predicted GTPase General function prediction only 42519560 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, probable galactitol specific LJ1683 34 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 42519547 Common - hit protein LJ1670 236 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 42519405 Common rpmB 50S ribosomal protein L28 LJ1533 35 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 42519170 Common - major facilitator superfamily permease LJ1245 30 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42518223 Common - anaerobic ribonucleoside triphosphate reductase LJ0137 90 COG1328 NrdD, Oxygen-sensitive ribonucleoside-triphosphate reductase Nucleotide transport and metabolism 42518719 Common - phosphate uptake regulator LJ0794 187 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 42519163 Nonpathogen - hypothetical protein LJ1238 1 None None None 42519775 Common - hypothetical protein LJ0550 16 COG3589 COG3589, Uncharacterized conserved protein Function unknown 42518919 Common def peptide deformylase LJ0993 211 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 42518543 Common - two-component system histidine kinase LJ0448 17 COG3290 CitA, Signal transduction histidine kinase regulating citrate/malate metabolism Signal transduction mechanisms 42518829 Common - hypothetical protein LJ0904 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 42518814 Common - ABC transporter permease component, Spermidine/putrescine LJ0889 198 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 42518622 Common - glycerol uptake facilitator protein LJ0700 132 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 42518768 Common - COMF operon protein 1 LJ0843 187 COG4098 comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) DNA replication, recombination, and repair 42518545 Common - hypothetical protein LJ0450 117 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 42518948 Common - hypothetical protein LJ1022 14 COG3944 COG3944, Capsular polysaccharide biosynthesis protein Cell envelope biogenesis, outer membrane 42518213 Common - hypothetical protein LJ0127 47 COG2365 COG2365, Protein tyrosine/serine phosphatase Signal transduction mechanisms 42519835 Nonpathogen - hypothetical protein LJ1786 1 COG3391 COG3391, Uncharacterized conserved protein Function unknown 42519515 Common - adenosine deaminase LJ1639 107 COG1816 Add, Adenosine deaminase Nucleotide transport and metabolism 42519380 Common - LexA repressor LJ1508 169 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 42519210 Common - hypothetical protein LJ1285 146 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42518761 Common - hypothetical protein LJ0836 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 42519353 Common hrcA heat-inducible transcription repressor LJ1481 149 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 42519887 Common - cation-transporting ATPase PacS LJ1838 233 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 42518910 Common - cysteine desulfurase NifS LJ0984 239 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 42518578 Common - glutamate racemase LJ0482 190 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 42518634 Common - hypothetical protein LJ0712 28 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 42519706 Common - pantothenate kinase LJ0619 74 COG1072 CoaA, Panthothenate kinase Coenzyme metabolism 42519045 Nonpathogen - hypothetical protein LJ1119 4 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 42519603 Common - hypothetical protein LJ1728 29 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 42519011 Common - hypothetical protein LJ1085 146 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 42519593 Common - glutamyl-tRNA(Gln) amidotransferase subunit C LJ1718 131 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 42518559 Nonpathogen - hypothetical protein LJ0463 1 None None None 42518130 Common - hypothetical protein LJ0044 4 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 42518325 Common - hypothetical protein LJ0239 47 COG1881 COG1881, Phospholipid-binding protein General function prediction only 42519219 Nonpathogen - hypothetical protein LJ1294 1 None None None 42518202 Common - hypothetical protein LJ0116 135 COG2188 PhnF, Transcriptional regulators Transcription 42519900 Common - 6-phosphogluconate dehydrogenase LJ1852 177 COG0362 Gnd, 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 42519339 Common - P-type proton motive membrane ATPase-like protein LJ1467 214 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42518632 Common - truncated 6-phospho-beta-galactosidase LJ0710 98 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 42519402 Common - ATP-dependent DNA helicase RecG LJ1530 241 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 42518485 Nonpathogen - hypothetical protein LJ0391 1 COG5422 ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Signal transduction mechanisms 42518286 Nonpathogen - hypothetical protein LJ0200 1 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 42518725 Common - hypothetical protein LJ0800 102 COG2188 PhnF, Transcriptional regulators Transcription 42518873 Nonpathogen - hypothetical protein LJ0948 1 None None None 42519663 Common - protease synthase and sporulation negative regulatory protein PAI 1 LJ0662 39 COG0456 RimI, Acetyltransferases General function prediction only 42518268 Common - 6-phospho-beta-glucosidase LJ0182 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 42518469 Common - hypothetical protein LJ0375 114 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 42519886 Common - hypothetical protein LJ1837 13 COG4633 COG4633, Uncharacterized protein conserved in bacteria Function unknown 42518278 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, probable cellobiose specific LJ0192 31 COG1440 CelA, Phosphotransferase system cellobiose-specific component IIB Carbohydrate transport and metabolism 42519744 Common - oligoendopeptidase F LJ0581 85 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 42518664 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, probable mannose specific LJ0742 12 COG2893 ManX, Phosphotransferase system, mannose/fructose-specific component IIA Carbohydrate transport and metabolism 42518604 Common - hypothetical protein LJ0682 5 COG3319 COG3319, Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases Secondary metabolites biosynthesis, transport, and catabolism 42519056 Common - hypothetical protein LJ1130 56 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 42518462 Common rpsI 30S ribosomal protein S9 LJ0368 248 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 42519232 Common - ABC transporter solute-binding component LJ1307 159 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 42518839 Common - hypothetical protein LJ0914 7 None None None 42519622 Common - hypothetical protein LJ1747 12 COG4905 COG4905, Predicted membrane protein Function unknown 42518909 Common - nucleoside phosphorylase LJ0983 82 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 42519117 Common - hypothetical protein LJ1192 18 COG1409 Icc, Predicted phosphohydrolases General function prediction only 42518146 Common - hypothetical protein LJ0060 34 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 42518356 Common - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D- alanyl ligase LJ0269 212 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 42519007 Common - hypothetical protein LJ1081 43 COG2996 COG2996, Uncharacterized protein conserved in bacteria Function unknown 42519715 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, glucose specific LJ0610 60 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42519793 Common - hypothetical protein LJ0532 12 COG3616 COG3616, Predicted amino acid aldolase or racemase Amino acid transport and metabolism 42518316 Common - hypothetical protein LJ0231 134 COG0798 ACR3, Arsenite efflux pump ACR3 and related permeases Inorganic ion transport and metabolism 42519320 Common - Lj928 prophage protein LJ1448 4 None None None 42519395 Common - oligopeptide ABC transporter solute-binding component LJ1523 162 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 42519588 Common - hypothetical protein LJ1711 10 COG5099 COG5099, RNA-binding protein of the Puf family, translational repressor Translation, ribosomal structure and biogenesis 42518808 Common - uracil-DNA glycosylase LJ0883 128 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 42519676 Common - hypothetical protein LJ0649 122 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 42519494 Common - hypothetical protein LJ1619 83 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 42518619 Common - 3-methyladenine DNA glycosylase LJ0697 132 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 42518531 Common - probable O-sialoglycoprotein endopeptidase LJ0436 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 42518757 Common - hypothetical protein LJ0832 4 COG4835 COG4835, Uncharacterized protein conserved in bacteria Function unknown 42519533 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, probable mannose specific LJ1656 21 COG2893 ManX, Phosphotransferase system, mannose/fructose-specific component IIA Carbohydrate transport and metabolism 42519467 Common - UTP--glucose-1-phosphate uridylyltransferase LJ1593 233 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 42518621 Common - hypothetical protein LJ0699 9 None None None 42519241 Common - RNA polymerase sigma factor RpoD LJ1317 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 42519408 Common - hypothetical protein LJ1536 163 COG1162 COG1162, Predicted GTPases General function prediction only 42519107 Nonpathogen - hypothetical protein LJ1181 1 COG1846 MarR, Transcriptional regulators Transcription 42518566 Common - glucose-6-phosphate 1-dehydrogenase LJ0470 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 42519306 Common - Lj928 prophage protein LJ1434 7 None None None 42518826 Common - hypothetical protein LJ0901 132 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 42519128 Common - hypothetical protein LJ1203 229 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 42519264 Common - GTP pyrophosphokinase LJ1394 206 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 42519061 Common - hypothetical protein LJ1135 179 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 42519680 Common - peptidase T LJ0645 64 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 42519798 Common - hypothetical protein LJ0527 5 COG1085 GalT, Galactose-1-phosphate uridylyltransferase Energy production and conversion 42518236 Common - hypothetical protein LJ0150 88 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 42519087 Common - hypothetical protein LJ1161 37 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 42518153 Common - hypothetical protein LJ0067 7 COG4863 COG4863, Uncharacterized protein conserved in bacteria Function unknown 42518803 Common smpB SsrA-binding protein LJ0878 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 42518296 Common - hypothetical protein LJ0210 126 COG1609 PurR, Transcriptional regulators Transcription 42518383 Common - Lj965 prophage antirepressor LJ0295 24 COG3561 COG3561, Phage anti-repressor protein Transcription 42518431 Common rplW 50S ribosomal protein L23 LJ0341 216 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 42518925 Common - phosphopantetheine adenylyltransferase LJ0999 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 42519344 Common - cardiolipinsynthetase LJ1472 149 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 42519698 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, probable mannose specific LJ0627 42 COG3444 COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB Carbohydrate transport and metabolism 42519893 Common - hypothetical protein LJ1844 29 COG4100 COG4100, Cystathionine beta-lyase family protein involved in aluminum resistance Inorganic ion transport and metabolism 42519294 Nonpathogen - Lj928 prophage protein LJ1424 1 None None None 42519460 Common - two-component system histidine kinase LJ1586 216 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 42518746 Common - hypothetical protein LJ0821 5 None None None 42518830 Common - hypothetical protein LJ0905 188 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 42519227 Common - hypothetical protein LJ1302 118 COG1725 COG1725, Predicted transcriptional regulators Transcription 42519329 Common - Lj928 prophage repressor protein LJ1457 5 None None None 42519202 Common - carbamoyl phosphate synthase small subunit LJ1277 238 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 42519750 Common - hypothetical protein LJ0575 95 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42518697 Common - lactacin F two-component system response regulator fragment LJ0773 4 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 42519038 Common hslU ATP-dependent protease ATP-binding subunit LJ1112 213 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 42519178 Common - hypothetical protein LJ1253 5 None None None 42518893 Common - hypothetical protein LJ0968 5 COG4839 FtsL, Protein required for the initiation of cell division Cell division and chromosome partitioning 42518792 Common - hypothetical protein LJ0867 97 COG0391 COG0391, Uncharacterized conserved protein Function unknown 42518198 Common - hypothetical protein LJ0112 20 COG5438 COG5438, Predicted multitransmembrane protein Function unknown 42519696 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, probable N-acetylgalactosamine specific LJ0629 40 COG3716 ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID Carbohydrate transport and metabolism 42519112 Common - lipoprotein signal peptidase LJ1187 169 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 42519724 Nonpathogen - hypothetical protein LJ0601 2 None None None 42518736 Common - hypothetical protein LJ0811 232 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 42518783 Common - beta-galactosidase LJ0858 39 COG1874 LacA, Beta-galactosidase Carbohydrate transport and metabolism 42519440 Common - hypothetical protein LJ1566 121 COG0657 Aes, Esterase/lipase Lipid metabolism 42519518 Common - translation initiation factor IF-3 LJ1641 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 42518487 Common - hypothetical protein LJ0394 9 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 42518348 Common - alpha-galactosidase LJ0261 48 COG3345 GalA, Alpha-galactosidase Carbohydrate transport and metabolism 42519053 Common - hypothetical protein LJ1127 9 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 42519157 Common - hypothetical protein LJ1232 51 COG2365 COG2365, Protein tyrosine/serine phosphatase Signal transduction mechanisms 42519172 Common - ABC transporter ATPase and permease components LJ1247 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42518966 Common - truncated transposase LJ1040 4 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 42519759 Common - aspartate racemase LJ0566 48 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 42519009 Common - hypothetical protein LJ1083 4 None None None 42519555 Common - penicillin-binding protein 1F LJ1678 205 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 42519041 Common - hypothetical protein LJ1115 7 COG1988 COG1988, Predicted membrane-bound metal-dependent hydrolases General function prediction only 42519631 Common - hypothetical protein LJ1755 6 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 42519794 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable cellobiose specific LJ0531 38 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 42518553 Common - hypothetical protein LJ0458 11 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 42518667 Common - dipeptide/tripeptide permease LJ0745 80 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 42519647 Common - hypothetical protein LJ1772 220 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 42518527 Common - hypothetical protein LJ0432 23 COG3884 FatA, Acyl-ACP thioesterase Lipid metabolism 42519332 Common - Lj928 prophage protein LJ1460 7 None None None 42518224 Common - anaerobic ribonucleoside-triphosphate reductase activating protein LJ0138 60 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 42518401 Common - Lj965 prophage minor head protein LJ0311 10 COG5585 COG5585, NAD+--asparagine ADP-ribosyltransferase Signal transduction mechanisms 42518628 Common - hypothetical protein LJ0706 15 COG3477 COG3477, Predicted periplasmic/secreted protein Function unknown 42519451 Common - hypothetical protein LJ1577 7 None None None 42519779 Nonpathogen - hypothetical protein LJ0546 1 None None None 42519803 Common - hypothetical protein LJ0522 124 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 42518533 Nonpathogen - hypothetical protein LJ0438 1 None None None 42519207 Common - orotidine 5'-phosphate decarboxylase LJ1282 160 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 42519849 Common - hypothetical protein LJ1800 28 COG3819 COG3819, Predicted membrane protein Function unknown 42518749 Common ppnK inorganic polyphosphate/ATP-NAD kinase LJ0824 238 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 42518104 Common - hypothetical protein LJ0019 17 COG2910 COG2910, Putative NADH-flavin reductase General function prediction only 42518923 Common - hypothetical protein LJ0997 8 COG4471 COG4471, Uncharacterized protein conserved in bacteria Function unknown 42518155 Common - hypothetical protein LJ0069 71 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 42519291 Nonpathogen - Lj928 prophage protein LJ1421 1 None None None 42518965 Common - hypothetical protein LJ1039 51 None None None 42519772 Nonpathogen - hypothetical protein LJ0553 3 None None None 42519455 Common - D-fructose-6-phosphate amidotransferase LJ1581 237 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 42519817 Common - hypothetical protein LJ0508 119 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 42519867 Common - hypothetical protein LJ1818 17 COG3589 COG3589, Uncharacterized conserved protein Function unknown 42519068 Common - hypothetical protein LJ1142 182 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 42518645 Common - hypothetical protein LJ0723 3 None None None 42518956 Common - hypothetical protein LJ1030 34 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 42518510 Common rplJ 50S ribosomal protein L10 LJ0415 216 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 42518520 Common - recombination protein RecR LJ0425 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 42518115 Common - endopeptidase O LJ0030 63 COG3590 PepO, Predicted metalloendopeptidase Posttranslational modification, protein turnover, chaperones 42518646 Common - hypothetical protein LJ0724 12 COG1846 MarR, Transcriptional regulators Transcription 42518210 Nonpathogen - nucleoside 2-deoxyribosyltransferase LJ0124 4 None None None 42519371 Common tsf elongation factor Ts LJ1499 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 42518473 Nonpathogen - hypothetical protein LJ0379 1 None None None 42518847 Common - hypothetical protein LJ0922 14 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 42519618 Nonpathogen - hypothetical protein LJ1743 2 COG1737 RpiR, Transcriptional regulators Transcription 42518991 Common - hypothetical protein LJ1066 24 COG2910 COG2910, Putative NADH-flavin reductase General function prediction only 42518434 Common rplV 50S ribosomal protein L22 LJ0344 228 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 42518688 Common - transposase LJ0765 69 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 42519327 Common - Lj928 prophage antirepressor LJ1455 42 COG3617 COG3617, Prophage antirepressor Transcription 42518496 Nonpathogen - hypothetical protein LJ0403 1 None None None 42519585 Common - hypothetical protein LJ1708 31 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 42518450 Common - adenylate kinase LJ0357 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 42518602 Common leuS leucyl-tRNA synthetase LJ0680 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42519767 Common - hypothetical protein LJ0558 27 COG4481 COG4481, Uncharacterized protein conserved in bacteria Function unknown 42519828 Common - major facilitator superfamily permease LJ1779 29 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 42519568 Nonpathogen - hypothetical protein LJ1691 1 None None None 42518457 Common - ABC transporter ATPase component LJ0363 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 42519432 Nonpathogen - hypothetical protein LJ1559 1 None None None 42518557 Common groEL chaperonin GroEL LJ0461 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 42518137 Common - hypothetical protein LJ0051 215 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 42518998 Common - ElaC LJ1073 115 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 42519653 Common - hypothetical protein LJ0672 7 COG1476 COG1476, Predicted transcriptional regulators Transcription 42519074 Common - hypothetical protein LJ1148 5 None None None 42518700 Nonpathogen - hypothetical protein LJ0775b 2 None None None 42519562 Common - hypothetical protein LJ1685 30 COG3711 BglG, Transcriptional antiterminator Transcription 42519425 Common - elongation factor P LJ1553 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 42518118 Common - transposase LJ0033 61 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 42518235 Common - hypothetical protein LJ0149 14 COG1866 PckA, Phosphoenolpyruvate carboxykinase (ATP) Energy production and conversion 42518882 Common - cation-transporting ATPase PacL LJ0957 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42518365 Common - hypothetical protein LJ0278 39 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 42519025 Common - hypothetical protein LJ1099 79 COG1284 COG1284, Uncharacterized conserved protein Function unknown 42518681 Common - trehalose operon repressor LJ0759 99 COG2188 PhnF, Transcriptional regulators Transcription 42519190 Common - hypothetical protein LJ1265 125 COG1609 PurR, Transcriptional regulators Transcription 42518480 Common - hypothetical protein LJ0386 5 None None None 42518599 Common - S-adenosylmethionine synthetase LJ0677 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 42519691 Common - hypothetical protein LJ0634 9 COG2461 COG2461, Uncharacterized conserved protein Function unknown 42518259 Common - hypothetical protein LJ0173 160 COG0344 COG0344, Predicted membrane protein Function unknown 42519284 Common - ABC transporter ATPase component LJ1414 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42518427 Common - elongation factor G LJ0337 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 42518105 Common - hypothetical protein LJ0020 4 None None None 42519364 Common - DNA polymerase III alpha subunit LJ1492 218 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 42518097 Common - replicative DNA helicase LJ0012 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 42519416 Nonpathogen - hypothetical protein LJ1544 1 None None None 42519257 Common - hypothetical protein LJ1387b 5 None None None 42518571 Common - hypothetical protein LJ0475 24 COG4472 COG4472, Uncharacterized protein conserved in bacteria Function unknown 42518741 Common - phosphocarrier protein HPr LJ0816 104 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 42518109 Common - hypothetical protein LJ0024 129 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 42519031 Common - hypothetical protein LJ1105 166 COG1161 COG1161, Predicted GTPases General function prediction only 42519812 Common - hypothetical protein LJ0513 186 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42518907 Common - ADP-ribose pyrophosphatase LJ0981 158 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 42518712 Common - ABC transporter ATPase component LJ0787 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 42518752 Common - hypothetical protein LJ0827 19 COG3410 COG3410, Uncharacterized conserved protein Function unknown 42518867 Common - hypothetical protein LJ0942 4 COG4836 COG4836, Predicted membrane protein Function unknown 42518707 Nonpathogen - hypothetical protein LJ0782 1 None None None 42518444 Common rplF 50S ribosomal protein L6 LJ0352 241 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 42519540 Common murC UDP-N-acetylmuramate--L-alanine ligase LJ1663 211 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 42518636 Common - hypothetical protein LJ0714 45 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 42519495 Common rpmG 50S ribosomal protein L33 LJ1619b 68 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 42519693 Common - hypothetical protein LJ0632 71 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 42518590 Common - hypothetical protein LJ0494 109 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 42518778 Common - UDP-glucose 4-epimerase LJ0853 233 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 42519485 Nonpathogen - hypothetical protein LJ1611 1 None None None 42518182 Common - hypothetical protein LJ0096 36 COG2738 COG2738, Predicted Zn-dependent protease General function prediction only 42518718 Common - ABC transporter ATPase component LJ0793 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 42519701 Common - hypothetical protein LJ0624 21 COG1264 PtsG, Phosphotransferase system IIB components Carbohydrate transport and metabolism 42519090 Common - hypothetical protein LJ1164 2 None None None 42519054 Common - hypothetical protein LJ1128 85 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 42519640 Common - hypothetical protein LJ1764 9 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 42518805 Nonpathogen - hypothetical protein LJ0880 1 COG1309 AcrR, Transcriptional regulator Transcription 42518662 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable sorbose specific LJ0740 36 COG3715 ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Carbohydrate transport and metabolism 42518880 Common - ribosomal large subunit pseudouridine synthase B LJ0955 202 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 42519346 Common - adenine phosphoribosyltransferase LJ1474 175 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 42519377 Common - ABC transporter ATPase and permease components LJ1505 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42518276 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, probable cellobiose specific LJ0190 31 COG1447 CelC, Phosphotransferase system cellobiose-specific component IIA Carbohydrate transport and metabolism 42518284 Common - tryptophanyl-tRNA synthetase II LJ0198 249 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42518464 Common - ABC transporter ATPase and permease components LJ0370 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42519508 Common - hypothetical protein LJ1632 10 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 42518209 Nonpathogen - hypothetical protein LJ0123 2 COG4640 COG4640, Predicted membrane protein Function unknown 42518723 Common - ribose 5-phosphate isomerase A LJ0798 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 42518306 Common - hypothetical protein LJ0221 88 COG1078 COG1078, HD superfamily phosphohydrolases General function prediction only 42518744 Common - adaptor protein LJ0819 9 COG4862 MecA, Negative regulator of genetic competence, sporulation and motility Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion 42518238 Nonpathogen - hypothetical protein LJ0152 1 None None None 42519099 Common - putative manganese-dependent inorganic pyrophosphatase LJ1173 55 COG1227 PPX1, Inorganic pyrophosphatase/exopolyphosphatase Energy production and conversion 42519742 Nonpathogen - hypothetical protein LJ0583 1 None None None 42519138 Common - hypothetical protein LJ1213 11 COG4975 GlcU, Putative glucose uptake permease Carbohydrate transport and metabolism 42519713 Common - hypothetical protein LJ0612 121 COG1737 RpiR, Transcriptional regulators Transcription 42519528 Common - DNA polymerase I LJ1651 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 42518148 Common - hypothetical protein LJ0062 21 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 42518479 Common - hypothetical protein LJ0385 5 None None None 42519687 Nonpathogen - hypothetical protein LJ0638 1 None None None 42519017 Common engA GTP-binding protein EngA LJ1091 223 COG1160 COG1160, Predicted GTPases General function prediction only 42519397 Common - oligopeptide ABC transporter permease component LJ1525 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 42519225 Nonpathogen - hypothetical protein LJ1300 2 None None None 42518750 Common - hypothetical protein LJ0825 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 42519788 Common - hypothetical protein LJ0537 166 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 42518576 Common - thioredoxin LJ0480 234 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 42519773 Common - hypothetical protein LJ0552 126 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 42519174 Common - ABC transporter ATPase and permease components LJ1249 5 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42518335 Common - hypothetical protein LJ0249 16 COG3153 COG3153, Predicted acetyltransferase General function prediction only 42519274 Common - fumarate reductase flavoprotein subunit LJ1404 227 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 42518320 Common - hypothetical protein LJ0234b 5 None None None 42519729 Common - guanylate kinase LJ0596 206 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 42518812 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase LJ0887 209 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 42519161 Common - hypothetical protein LJ1236 13 COG0456 RimI, Acetyltransferases General function prediction only 42519889 Common - cell wall-associated serine proteinase LJ1840 152 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 42519879 Common - hypothetical protein LJ1830 140 COG2252 COG2252, Permeases General function prediction only 42519831 Common - D-alanine--poly(phosphoribitol) ligase subunit 2 LJ1782 11 None None None 42518371 Common - hypothetical protein LJ0284 10 COG4485 COG4485, Predicted membrane protein Function unknown 42518245 Common - hypothetical protein LJ0159 82 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 42518327 Common - hypothetical protein LJ0241 63 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 42518912 Common - probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase LJ0986 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 42519601 Common - transposase LJ1726 64 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 42518675 Common - glutamine ABC transporter ATPase component LJ0753 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 42519860 Common - cytochrome d ubiquinol oxidase subunit II LJ1811 152 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 42519194 Common - neutral endopeptidase LJ1269 63 COG3590 PepO, Predicted metalloendopeptidase Posttranslational modification, protein turnover, chaperones 42519216 Common - signal peptidase I LJ1291 181 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 42519439 Common - hypothetical protein LJ1565 13 COG4907 COG4907, Predicted membrane protein Function unknown 42518132 Nonpathogen - hypothetical protein LJ0046 4 None None None 42519625 Common - hypothetical protein LJ1749 11 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 42518630 Common - hypothetical protein LJ0708 105 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 42518889 Common - rod shape-determining protein MreD LJ0964 7 COG2891 MreD, Cell shape-determining protein Cell envelope biogenesis, outer membrane 42519700 Common - DMT permease LJ0625 94 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 42518200 Common - hypothetical protein LJ0114 42 COG0657 Aes, Esterase/lipase Lipid metabolism 42518298 Common - maltogenic amylase or neopullulanase LJ0212 166 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 42518090 Common - DNA gyrase subunit A LJ0005 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 42518869 Common - hypothetical protein LJ0944 188 COG0759 COG0759, Uncharacterized conserved protein Function unknown 42518389 Common - Lj965 prophage replication protein LJ0299 8 None None None 42519462 Common - hypothetical protein LJ1588 56 COG2357 COG2357, Uncharacterized protein conserved in bacteria Function unknown 42519205 Common - pyrimidine regulatory protein PyrR LJ1280 118 COG2065 PyrR, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase Nucleotide transport and metabolism 42518974 Common - dTDP-D-glucose 4,6-dehydratase LJ1049 233 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 42518318 Nonpathogen - hypothetical protein LJ0233 1 None None None 42519334 Nonpathogen - Lj928 prophage protein LJ1462 1 None None None 42519855 Common - hypothetical protein LJ1806 20 None None None 42519301 Nonpathogen - Lj928 prophage protein LJ1429 1 None None None 42518935 Common tuf elongation factor Tu LJ1009 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 42518626 Common - hypothetical protein LJ0704 14 None None None 42518682 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, probable trhalose specific LJ0760 61 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42519670 Common - ABC transporter permease component LJ0655 165 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 42519752 Common - hypothetical protein LJ0573 3 None None None 42518860 Common - ATP synthase C chain LJ0935 35 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 42519898 Common - hypothetical protein LJ1850 202 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 42518191 Nonpathogen - hypothetical protein LJ0105 2 COG1309 AcrR, Transcriptional regulator Transcription 42519578 Common - Na+/H+ antiporter LJ1701 64 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 42519390 Common - dipeptidase LJ1518 24 COG4690 PepD, Dipeptidase Amino acid transport and metabolism 42519471 Common - hypothetical protein LJ1597 8 COG2246 COG2246, Predicted membrane protein Function unknown 42519881 Common - peptide deformylase LJ1832 149 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 42518655 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable cellobiose specific LJ0733 38 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 42519312 Common - Lj928 prophage portal protein LJ1440 11 COG3728 XtmA, Phage terminase, small subunit DNA replication, recombination, and repair 42519722 Common - hypothetical protein LJ0603 46 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42519570 Common - hypothetical protein LJ1693 142 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 42519389 Common - hypothetical protein LJ1517 28 COG2739 COG2739, Uncharacterized protein conserved in bacteria Function unknown 42519089 Common - hypothetical protein LJ1163 120 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 42519678 Common - hypothetical protein LJ0647 31 COG2323 COG2323, Predicted membrane protein Function unknown 42519531 Common - phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable mannose specific LJ1654 34 COG3715 ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Carbohydrate transport and metabolism 42518848 Common - hypothetical protein LJ0923 10 COG4767 VanZ, Glycopeptide antibiotics resistance protein Defense mechanisms 42518447 Common rpmD 50S ribosomal protein L30 LJ0354b 58 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 42519872 Common - glucosamine-6-P isomerase LJ1823 83 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 42518854 Common - thymidine kinase LJ0929 99 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 42519469 Common - methionine aminopeptidase LJ1595 248 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 42518755 Common - hypothetical protein LJ0830 204 COG0628 PerM, Predicted permease General function prediction only 42519308 Nonpathogen - Lj928 prophage minor head protein LJ1436 1 None None None 42519632 Common - probable reductase LJ1756 204 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 42518519 Common - hypothetical protein LJ0424 40 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 42518610 Common - hypothetical protein LJ0688 2 None None None 42518390 Common - Lj965 prophage replication protein LJ0300 9 None None None 42518565 Common - hypothetical protein LJ0469 8 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 42519141 Common - hypothetical protein LJ1216 33 COG4405 COG4405, Uncharacterized protein conserved in bacteria Function unknown 42519243 Common - glycyl-tRNA synthetase beta chain LJ1319 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 42518267 Common - hypothetical protein LJ0181 135 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 42518589 Common - dipeptidase PepV LJ0493 164 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 42518771 Common secA preprotein translocase subunit SecA LJ0846 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 42518981 Common - hypothetical protein LJ1056 210 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 42518226 Common - hypothetical protein LJ0140 23 COG2461 COG2461, Uncharacterized conserved protein Function unknown 42519591 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B LJ1716 213 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 42519105 Nonpathogen - hypothetical protein LJ1179 1 None None None 42518692 Common - bacteriocin lactacin F, subunit LafA precursor LJ0769 2 None None None 42519501 Common - phenylalanyl-tRNA synthetase alpha chain LJ1625 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis