Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A, complete sequence NC_004633 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 29171494 Pathogen hopT1-1 type III effector HopT1-1 PSPTOA0019 2 None None None 29171482 Pathogen hopAM1-2 type III effector HopAM1-2 PSPTOA0005 1 None None None 29171500 Pathogen - hypothetical protein PSPTOA0026 1 None None None 29171513 Common - transcriptional regulator, PbsX family PSPTOA0039 18 COG1396 HipB, Predicted transcriptional regulators Transcription 29171511 Common - major facilitator family transporter PSPTOA0037 124 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 29171479 Common repA replication protein RepA PSPTOA0001 10 None None None 29171537 Pathogen traX-2 traX protein PSPTOA0063 2 None None None 29171530 Pathogen traR-2 traR protein PSPTOA0056 1 None None None 29171502 Pathogen - mobilization protein MobB, putative PSPTOA0028 1 None None None 29171515 Pathogen - lipoprotein, putative PSPTOA0041 1 None None None 29171496 Pathogen - hypothetical protein PSPTOA0022 1 None None None 29171489 Common - ISPsy4, transposase PSPTOA0013 78 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 29171545 Common - transcriptional regulator, GntR family PSPTOA0071 81 COG1802 GntR, Transcriptional regulators Transcription 29171480 Common rulA ultraviolet light resistance protein A PSPTOA0002 78 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 29171535 Pathogen - hypothetical protein PSPTOA0061 1 None None None 29171504 Common - glycosyl hydrolase, family 25 PSPTOA0030 35 COG3757 Acm, Lyzozyme M1 (1,4-beta-N-acetylmuramidase) Cell envelope biogenesis, outer membrane 29171522 Pathogen traK-2 traK protein PSPTOA0048 2 None None None 29171542 Common - conjugal transfer protein, TraG/TraD family PSPTOA0068 14 None None None 29171499 Common - hypothetical protein PSPTOA0025 23 None None None 29171508 Common - GGDEF domain/EAL domain protein PSPTOA0034 178 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 29171518 Common traI relaxase PSPTOA0044 10 None None None 29171533 Pathogen traT traT protein PSPTOA0059 2 None None None 29171487 Common - resolvase, putative PSPTOA0011 142 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 29171490 Common - ATPase, ParA family PSPTOA0014 160 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 29171527 Common traO-2 traO protein PSPTOA0053 5 None None None 29171540 Common trbA trbA protein PSPTOA0066 8 None None None 29171485 Common - ATPase, ParA family PSPTOA0009 182 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 29171506 Common lsc-3 levansucrase PSPTOA0032 16 None None None 29171525 Pathogen traM-2 traM protein PSPTOA0051 6 None None None 29171538 Common traY-2 traY protein PSPTOA0064 13 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 29171492 Pathogen shc01 type III chaperone ShcO1 PSPTOA0017 1 None None None 29171520 Pathogen - hypothetical protein PSPTOA0046 1 None None None 29171483 Pathogen - hypothetical protein PSPTOA0007 1 None None None 29171510 Common - hypothetical protein PSPTOA0036 100 COG0579 COG0579, Predicted dehydrogenase General function prediction only 29171524 Pathogen traL-2 traL protein PSPTOA0050 3 None None None 29171481 Common - site-specific recombinase, phage integrase family PSPTOA0004 198 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 29171514 Common - hypothetical protein PSPTOA0040 9 COG0250 NusG, Transcription antiterminator Transcription 29171544 Common - hypothetical protein PSPTOA0070 2 None None None 29171519 Common - type IV pilus biogenesis protein PSPTOA0045 151 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 29171495 Common - resolvase, putative PSPTOA0021 89 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 29171531 Common - hypothetical protein PSPTOA0057 31 COG3668 ParE, Plasmid stabilization system protein General function prediction only 29171529 Pathogen traQ-2 traQ protein PSPTOA0055 3 None None None 29171536 Common traW-2 traW protein PSPTOA0062 5 None None None 29171512 Pathogen - hypothetical protein PSPTOA0038 1 None None None 98985776 Common - site-specific recombinase, phage integrase family PSPTO_A0072 4 None None None 29171516 Common pilT pilT protein PSPTOA0042 26 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 29171501 Pathogen - mobilization protein MobC, putative PSPTOA0027 3 None None None 29171497 Pathogen - hypothetical protein PSPTOA0023 1 None None None 29171488 Pathogen HopX1 type III effector HopX1 PSPTOA0012 4 None None None 29171534 Common traU-2 traU protein PSPTOA0060 10 None None None 29171523 Common - DNA primase, putative PSPTOA0049 94 COG4643 COG4643, Uncharacterized protein conserved in bacteria Function unknown 29171528 Pathogen traP-2 traP protein PSPTOA0054 2 None None None 29171498 Pathogen - hypothetical protein PSPTOA0024 1 None None None 29171507 Pathogen - hypothetical protein PSPTOA0033 1 None None None 29171543 Pathogen - hypothetical protein PSPTOA0069 1 None None None 29171503 Common - relaxase/mobilization nuclease MobA, putative PSPTOA0029 23 None None None 29171486 Common - transposase, Tn3 family PSPTOA0010 56 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 29171532 Common - hypothetical protein PSPTOA0058 9 None None None 29171521 Common - endonuclease PSPTOA0047 32 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 29171539 Pathogen - exclusion-determining protein, putative PSPTOA0065 2 None None None 29171526 Common traN-2 traN protein PSPTOA0052 10 None None None 29171491 Common - plasmid partition protein ParB, truncated PSPTOA0015 3 None None None 29171509 Common - transcriptional regulator, GntR family PSPTOA0035 145 COG2186 FadR, Transcriptional regulators Transcription 29171541 Common trbB trbB protein PSPTOA0067 5 None None None 29171484 Common - partion protein, ParB family PSPTOA0008 183 COG1475 Spo0J, Predicted transcriptional regulators Transcription 29171493 Common hopO1-1 type III effector HopO1-1 PSPTOA0018 3 None None None 29171505 Common - hypothetical protein PSPTOA0031 38 COG1649 COG1649, Uncharacterized protein conserved in bacteria Function unknown 29171517 Pathogen - traH protein, putative PSPTOA0043 2 None None None