Yersinia pestis CO92 plasmid pMT1, complete sequence NC_003134 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 16082829 Pathogen - hypothetical protein YPMT1.42Ac 1 None None None 16082782 Common - putative transposase YPMT1.01 82 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 16082864 Pathogen - hypothetical protein YPMT1.72c 1 None None None 16082871 Common - transposase YPMT1.79c 89 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 16082878 Common - hypothetical protein YPMT1.86c 3 None None None 16082791 Common - minor tail fiber protein L YPMT1.09c 14 COG4672 gp18, Phage-related protein Function unknown 16082787 Pathogen - hypothetical protein YPMT1.05c 3 None None None 16082794 Pathogen - hypothetical protein YPMT1.12c 2 None None None 40787868 Pathogen - hypothetical protein YPMT1.63c 5 None None None 16082832 Pathogen - hypothetical protein YPMT1.45c 2 None None None 16082857 Common - putative DNA-binding protein YPMT1.66c 6 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 16082850 Common - hypothetical protein YPMT1.60c 4 COG5338 COG5338, Uncharacterized protein conserved in bacteria Function unknown 16082817 Pathogen - putative transcriptional regulator YPMT1.33 2 None None None 16082808 Pathogen - hypothetical protein YPMT1.25Ac 2 None None None 16082820 Pathogen - hypothetical protein YPMT1.35c 2 None None None 16082840 Common - putative recombinase YPMT1.50c 221 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 16082876 Pathogen - F1 capsule antigen YPMT1.84 1 None None None 40787866 Common - putative transposase YPMT1.37c 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 16082827 Common - putative exonuclease subunit 1 YPMT1.41c 4 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 16082834 Pathogen - hypothetical protein YPMT1.46Ac 2 None None None 16082806 Common - hypothetical protein YPMT1.24c 17 COG1783 XtmB, Phage terminase large subunit General function prediction only 16082845 Common - hypothetical protein YPMT1.54 13 None None None 16082855 Common - putative DNA methylase YPMT1.64c 117 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 16082807 Pathogen - hypothetical protein YPMT1.25c 2 None None None 16082801 Pathogen - hypothetical protein YPMT1.19c 2 None None None 16082836 Pathogen - hypothetical protein YPMT1.47c 2 None None None 16082880 Common cobT porphyrin biosynthetic protein YPMT1.87 47 COG4547 CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) Coenzyme metabolism 16082874 Common caf1M putative F1 chaperone protein YPMT1.82 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 40787863 Common - putative ABC transporter ATP-binding protein YPMT1.27c 199 COG2401 COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain General function prediction only 16082818 Pathogen - hypothetical protein YPMT1.34 2 None None None 16082860 Common - hypothetical protein YPMT1.68A 15 None None None 16082841 Pathogen - hypothetical protein YPMT1.50Ac 2 None None None 16082824 Pathogen - hypothetical protein YPMT1.39c 2 None None None 16082843 Pathogen - hypothetical protein YPMT1.52c 2 None None None 16082815 Pathogen - hypothetical protein YPMT1.31 2 None None None 16082805 Common - hypothetical protein YPMT1.23c 5 None None None 40787870 Pathogen - murine toxin YPMT1.74 3 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 16082816 Common - putative lipoprotein YPMT1.32 6 None None None 16082862 Common - putative resolvase YPMT1.70 87 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 16082784 Common - tail fiber assembly protein G YPMT1.03c 16 COG5525 COG5525, Bacteriophage tail assembly protein General function prediction only 16082797 Pathogen - hypothetical protein YPMT1.15c 2 None None None 40787861 Common - transposase/IS protein YPMT1.02 100 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 16082848 Common - transposase YPMT1.58c 82 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 16082831 Common - putative replication protein A YPMT1.44 6 None None None 16082838 Common - putative lipoprotein YPMT1.49c 25 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 16082796 Common - hypothetical protein YPMT1.14c 19 COG5492 COG5492, Bacterial surface proteins containing Ig-like domains Cell motility and secretion 16082869 Pathogen - hypothetical protein YPMT1.76A 3 None None None 40787867 Pathogen - hypothetical protein YPMT1.61N 1 None None None 16082813 Common - hypothetical protein YPMT1.29c 112 COG1475 Spo0J, Predicted transcriptional regulators Transcription 16082858 Common parB partitioning protein B YPMT1.67c 11 COG1475 Spo0J, Predicted transcriptional regulators Transcription 16082803 Common - hypothetical protein YPMT1.21c 8 None None None 16082851 Common - antirestriction protein YPMT1.61c 16 COG4734 ArdA, Antirestriction protein General function prediction only 16082846 Pathogen - hypothetical protein YPMT1.55c 2 None None None 40787865 Pathogen - hypothetical protein YPMT1.35N 1 None None None 16082828 Common - putative periplasmic protein YPMT1.42 69 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 16082879 Pathogen - hypothetical protein YPMT1.86A 2 None None None 16082792 Common - minor tail fiber protein M YPMT1.10c 12 COG4718 COG4718, Phage-related protein Function unknown 16082865 Common - putative phospholipase D YPMT1.73 46 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 16082872 Common - putative transposase YPMT1.80c 88 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 16082833 Pathogen - hypothetical protein YPMT1.46c 2 None None None 16082823 Pathogen - hypothetical protein YPMT1.38c 2 None None None 16082856 Pathogen - hypothetical protein YPMT1.65 1 None None None 16082809 Common - hypothetical protein YPMT1.26c 3 COG2401 COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain General function prediction only 16082844 Pathogen - hypothetical protein YPMT1.53c 2 None None None 16082821 Pathogen - hypothetical protein YPMT1.36c 2 None None None 16082867 Common - reverse transcriptase YPMT1.75c 83 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 16082814 Common - hypothetical protein YPMT1.30 95 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 16082799 Pathogen - hypothetical protein YPMT1.17c 2 None None None 16082790 Common - putative phage tail protein YPMT1.08c 13 COG1310 COG1310, Predicted metal-dependent protease of the PAD1/JAB1 superfamily General function prediction only 16082826 Pathogen - hypothetical protein YPMT1.40Ac 2 None None None 16082788 Common - host specificity protein J YPMT1.06c 73 COG4733 COG4733, Phage-related protein, tail component Function unknown 16082861 Common - hypothetical protein YPMT1.69 9 None None None 16082835 Pathogen - hypothetical protein YPMT1.46Bc 2 None None None 16082868 Pathogen - hypothetical protein YPMT1.76 3 None None None 16082854 Pathogen - hypothetical protein YPMT1.63Ac 5 None None None 16082812 Common - hypothetical protein YPMT1.28c 42 COG1475 Spo0J, Predicted transcriptional regulators Transcription 16082804 Pathogen - hypothetical protein YPMT1.22c 5 None None None 16082800 Pathogen - hypothetical protein YPMT1.18c 2 None None None 40787869 Pathogen - hypothetical protein YPMT1.64N 1 None None None 16082795 Pathogen - hypothetical protein YPMT1.13c 2 None None None 16082881 Common cobS porphyrin biosynthetic protein YPMT1.88 54 COG0714 COG0714, MoxR-like ATPases General function prediction only 16082837 Common - hypothetical protein YPMT1.48c 5 None None None 16082875 Common caf1A putative F1 capsule anchoring protein YPMT1.83 36 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 40787864 Pathogen - hypothetical protein YPMT1.34N 1 None None None 16082825 Common - putative exonuclease subunit 2 YPMT1.40c 27 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 16082847 Common - transposase/IS protein YPMT1.57c 100 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 16082802 Common - hypothetical protein YPMT1.20c 23 COG5492 COG5492, Bacterial surface proteins containing Ig-like domains Cell motility and secretion 16082852 Pathogen - hypothetical protein YPMT1.62c 5 None None None 16082842 Common - putative exonuclease YPMT1.51c 191 COG0258 Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair 16082859 Common parA partitioning protein A YPMT1.68c 128 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 16082810 Pathogen - hypothetical protein YPMT1.26Ac 2 None None None 16082873 Common - putative F1 operon positive regulatory protein YPMT1.81c 22 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 16082830 Pathogen - hypothetical protein YPMT1.43c 2 None None None 16082819 Pathogen - hypothetical protein YPMT1.34A 2 None None None 16082789 Common - putative phage tail protein YPMT1.07c 13 COG4723 COG4723, Phage-related protein, tail component Function unknown 40787862 Common - putative phage tail protein YPMT1.04c 17 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 16082793 Common - hypothetical protein YPMT1.11c 26 COG3941 COG3941, Mu-like prophage protein General function prediction only 16082863 Common - hypothetical protein YPMT1.71 37 COG5464 COG5464, Uncharacterized conserved protein Function unknown 16082798 Pathogen - hypothetical protein YPMT1.16c 2 None None None 16082839 Pathogen - hypothetical protein YPMT1.49Ac 2 None None None 16082849 Common - putative DNA-binding protein YPMT1.59c 111 COG1475 Spo0J, Predicted transcriptional regulators Transcription