Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence NC_003063 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 159185745 Common - isomerase/lactonizing enzyme Atu3453 119 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 15890896 Common glgC glucose-1-phosphate adenylyltransferase Atu4076 169 COG0448 GlgC, ADP-glucose pyrophosphorylase Carbohydrate transport and metabolism 15891775 Common fsr fosmidomycin resistance protein Atu3154 110 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 159186081 Common - ABC transporter, membrane spanning protein (sugar) Atu4251 142 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15890504 Common - transcriptional regulator, LacI family Atu4481 60 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159185589 Common - transcriptional regulator, LacI family Atu3062 130 COG1609 PurR, Transcriptional regulators Transcription 15891854 Common - peptide synthetase Atu3072 223 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 159186134 Common gstR transcriptional regulator, LysR family Atu4367 174 COG0583 LysR, Transcriptional regulator Transcription 159186350 Common - nucleotidyltransferase Atu4856 10 COG1708 COG1708, Predicted nucleotidyltransferases General function prediction only 15890996 Common - hypothetical protein Atu3973 66 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 15891784 Common kdgF pectin degradation protein Atu3145 34 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 15891082 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu3880 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 15891323 Common - hypothetical protein Atu3616 17 None None None 159186218 Common - ABC transporter, membrane spanning protein (sugar) Atu4557 144 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15890222 Common - oxalate decarboxylase Atu4771 16 COG2140 COG2140, Thermophilic glucose-6-phosphate isomerase and related metalloenzymes Carbohydrate transport and metabolism / General function prediction only 15891845 Common - hypothetical protein Atu3081 47 COG5267 COG5267, Uncharacterized protein conserved in bacteria Function unknown 15891522 Common - ABC transporter, membrane spanning protein Atu3411 215 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 17938580 Common - IS 426 transposase Atu4891 42 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 159185850 Common - siderophore biosynthesis protein Atu3669 108 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 15891009 Common dapA dihydrodipicolinate synthase Atu3960 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 15890995 Common ina ice nucleation-like protein Atu3974 34 None None None 159185771 Common - ABC transporter, substrate binding protein (sulfate) Atu3504 90 COG4150 CysP, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 15890539 Common - hippurate hydrolase Atu4444 165 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 15890614 Common rbsB ABC transporter, substrate binding protein (sugar) Atu4369 98 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159186375 Common - hypothetical protein Atu8193 14 COG4317 COG4317, Uncharacterized protein conserved in bacteria Function unknown 15890963 Common - transcriptional regulator, AsnC family Atu4006 131 COG1522 Lrp, Transcriptional regulators Transcription 15891569 Common - D-amino acid dehydrogenase Atu3364 114 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 15891295 Pathogen - hypothetical protein Atu3646 1 COG3692 COG3692, Uncharacterized protein conserved in bacteria Function unknown 15890319 Common ftsZ1 cell division protein FtsZ Atu4673 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 159186275 Common - ABC transporter, nucleotide binding/ATPase protein (amino acid) Atu4690 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 15890732 Common - ABC transporter, membrane spanning protein (sugar) Atu4250 144 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 159185675 Common malG ABC transporter, membrane spanning protein (sugar) Atu3284 200 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15890379 Common - glycosyltransferase Atu4609 24 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 15891411 Common uxuA mannonate dehydratase Atu3529 58 COG1312 UxuA, D-mannonate dehydratase Carbohydrate transport and metabolism 15891529 Common ordL oxidoreductase Atu3404 145 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 15890422 Common - serine protease Atu4566 39 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 15890624 Common - ABC transporter, membrane spanning protein (sugar) Atu4359 204 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15890808 Common - hypothetical protein Atu4170 54 COG1748 LYS9, Saccharopine dehydrogenase and related proteins Amino acid transport and metabolism 159185957 Common - hypothetical protein Atu3930 94 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 159186248 Common - GGDEF family protein Atu4628 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 159185773 Common - hypothetical protein Atu3506 2 None None None 15890097 Common - IS426 transposase Atu4890 109 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 159185630 Common - hypothetical protein Atu3160 20 COG1359 COG1359, Uncharacterized conserved protein Function unknown 159185755 Common mmgC acyl-CoA dehydrogenase Atu3474 165 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 15890349 Common oxyR transcriptional regulator, LysR family Atu4641 190 COG0583 LysR, Transcriptional regulator Transcription 15890969 Common bioD dithiobiotin synthetase Atu3999 155 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 15891406 Common - ABC transporter, membrane spanning protein Atu3534 105 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 159186210 Common pobA 4-hydroxybenzoate 3-monooxygenase Atu4544 51 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 15890855 Common - mandelate racemase Atu4120 124 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 15891044 Common - hypothetical protein Atu3918 20 COG4292 COG4292, Predicted membrane protein Function unknown 159185618 Common - transcriptional regulator, AraC family Atu3134 66 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 15891242 Common serA D-3-phosphoglycerate dehydrogenase Atu3706 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 159186162 Common - ABC transporter, nucleotide binding/ATPase protein (oligopeptide) Atu4435 249 COG1124 DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 159185966 Common arcB ornithine cyclodeaminase Atu3949 88 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 15891163 Common kdpC potassium-transporting ATPase C chain Atu3788 95 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 159185873 Common tolB translocation protein TolB Atu3714 151 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 159185894 Common - hypothetical protein Atu3772 218 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 15890340 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu4650 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15891444 Common - non-heme haloperoxidase Atu3493 155 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 15891364 Common xylF ABC transporter, substrate binding protein (xylose) Atu3576 85 COG4213 XylF, ABC-type xylose transport system, periplasmic component Carbohydrate transport and metabolism 15890517 Common sitD ABC transporter, membrane spanning protein (iron transport) Atu4468 190 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 159185707 Common - transcriptional regulator, LysR family Atu3355 186 COG0583 LysR, Transcriptional regulator Transcription 15891333 Common ftsX cell division protein Atu3607 35 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 15891586 Common - hypothetical protein Atu3347 164 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15890849 Common - ABC transporter, membrane spanning protein (branched chain amino acid) Atu4126 151 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 15890186 Common pssF glycosyltransferase Atu4806 165 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15890562 Common - ABC transporter, substrate binding protein (spermidine/putrescine) Atu4421 81 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 15891547 Common - two component sensor kinase Atu3386 49 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 159186038 Pathogen - hypothetical protein Atu4134 1 None None None 15890578 Common - hypothetical protein Atu4404 55 COG3213 NnrS, Uncharacterized protein involved in response to NO Inorganic ion transport and metabolism 159186088 Common - ABC transporter, substrate binding protein Atu4262 51 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 15891609 Common exoF exopolysaccharide production protein Atu3326 59 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 159185824 Common - hypothetical protein Atu3615 57 COG3542 COG3542, Uncharacterized conserved protein Function unknown 159186318 Common - inositol monophosphatase family protein Atu4787 202 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 159185978 Common glf UDP-galactopyranose mutase Atu3975 58 COG0562 Glf, UDP-galactopyranose mutase Cell envelope biogenesis, outer membrane 159185599 Common - ABC transporter, nucleotide binding/ATPase protein (spermidine/putrescine) Atu3089 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 159186053 Common - hypothetical protein Atu4176 31 COG5373 COG5373, Predicted membrane protein Function unknown 159186188 Common - hypothetical protein Atu4491 108 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 15890838 Common - hypothetical protein Atu4137 119 COG1285 SapB, Uncharacterized membrane protein Function unknown 159185865 Common - putative thioredoxin Atu3698 232 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 159185939 Common nirD nitrite reductase small subunit Atu3901 81 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 15890598 Common - hypothetical protein Atu4385 21 COG4309 COG4309, Uncharacterized conserved protein Function unknown 17937562 Pathogen - hypothetical protein Atu3857 1 None None None 15891666 Common - ABC transporter, membrane spanning protein (dipeptide) Atu3267 219 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159185848 Common - hypothetical protein Atu3663 39 COG1959 COG1959, Predicted transcriptional regulator Transcription 159185564 Common - hypothetical protein Atu3010 45 COG3832 COG3832, Uncharacterized conserved protein Function unknown 159185900 Common - transcriptional regulator, FadR/GntR family Atu3794 108 COG2186 FadR, Transcriptional regulators Transcription 15890981 Common - MFS permease Atu3988 205 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 159185952 Pathogen - hypothetical protein Atu3920 1 None None None 159186251 Common - hypothetical protein Atu4635 27 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 15890968 Common bioA adenosylmethionine--8-amino-7-oxononanoate transaminase Atu4000 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 159186179 Common gltX glutamyl-tRNA synthetase Atu4474 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 15890357 Common pit* phosphate permease (N-terminal) Atu4633 158 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 159185826 Common - hypothetical protein Atu3618 60 COG1738 COG1738, Uncharacterized conserved protein Function unknown 159186068 Common fabF 3-oxoacyl-(acyl carrier protein) synthase II Atu4216 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15890572 Common napC periplasmic nitrate reductase, cytochrome c-type protein Atu4410 47 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 159185594 Common uraA uracil transport protein Atu3076 124 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 15890377 Common - glycosyltransferase Atu4613 167 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15890236 Common - Xaa-Pro dipeptidase Atu4757 184 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 15891069 Common - ABC transporter, membrane spanning protein (sugarl) Atu3893 154 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15890771 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu4211 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15890384 Common - IS3 family transposase Atu4604 97 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 15891266 Pathogen - putative siderophore biosynthesis protein Atu3679 1 None None None 15890874 Common - hypothetical protein Atu4100 19 None None None 159186329 Common - two component response regulator Atu4803 163 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 15891603 Common - hypothetical protein Atu3331 72 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 15891221 Common - hypothetical protein Atu3727 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 159185604 Common ugpC ABC transporter, nucleotide binding/ATPase protein (sn-Glycerol-3-phosphate) Atu3099 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 159186040 Common - hypothetical protein Atu4141 19 COG1661 COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif General function prediction only 15890635 Common vgrG VgrG protein Atu4348 56 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 15890863 Pathogen - hypothetical protein Atu4111 1 None None None 159185914 Pathogen - hypothetical protein Atu3847 1 None None None 15891707 Common - inner membrane ABC transporter permease protein YjfF Atu3225 134 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 15891232 Common tolR tolR protein Atu3716 139 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 159185945 Common - hypothetical protein Atu3909 23 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 15890299 Common - chlorohydrolase Atu4694 154 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 15891314 Common aroB 3-dehydroquinate synthase Atu3625 207 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 15891505 Common - alkanesulfonate monooxygenase Atu3430 80 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 159186369 Common - hypothetical protein Atu8094 6 None None None 159186146 Common norC nitric oxide reductase, cytochrome c-containing subunit Atu4389 36 None None None 15890338 Common - ABC transporter, membrane spanning protein (sugar) Atu4652 157 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15891874 Common - agropine synthesis reductase Atu3051 235 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 159186008 Common exoA succinoglycan biosynthesis protein Atu4053 55 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15890678 Common - hypothetical protein Atu4304 180 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 15891809 Common - hypothetical protein Atu3117 21 None None None 159186072 Common purU formyltetrahydrofolate deformylase Atu4231 218 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 15890383 Common - IS3 family transposase Atu4605 65 None None None 159186105 Common nwsB two component response regulator Atu4300 200 COG4566 TtrR, Response regulator Signal transduction mechanisms 15891738 Common - outer membrane protein Atu3191 72 COG3047 OmpW, Outer membrane protein W Cell envelope biogenesis, outer membrane 15890589 Common - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Atu4393 152 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 15891475 Common cpoF non-heme chloroperoxidase Atu3463 143 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 15890497 Common - ABC transporter, membrane spanning protein Atu4488 178 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 159185928 Common lyxK L-xylulose kinase Atu3874 178 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 159185810 Common - transporter Atu3590 123 COG1295 Rbn, Predicted membrane protein Function unknown 159186343 Common ydeZ ABC transporter, membrane spanning protein (sugar) Atu4845 123 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 15890982 Common hexA transcriptional regulator, LysR family Atu3987 153 COG0583 LysR, Transcriptional regulator Transcription 17937839 Pathogen - hypothetical protein Atu4144 1 None None None 15891481 Common - ABC transporter, nucleotide binding/ATPase protein Atu3457 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15890112 Common - hypothetical protein Atu4878 13 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 15891822 Common arfA alpha-L-arabinofuranosidase Atu3104 31 COG3534 AbfA, Alpha-L-arabinofuranosidase Carbohydrate transport and metabolism 15890111 Pathogen - hypothetical protein Atu4879 1 None None None 15890277 Common - hypothetical protein Atu8096 40 COG3237 COG3237, Uncharacterized protein conserved in bacteria Function unknown 15890788 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu4194 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 17938017 Pathogen - hypothetical protein Atu4328 1 None None None 159186222 Common - ABC transporter, substrate binding protein (sugar) Atu4564 33 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159186231 Common - hypothetical protein Atu4581 113 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 15891192 Common - hypothetical protein Atu3758 38 COG3750 COG3750, Uncharacterized protein conserved in bacteria Function unknown 159186295 Common - ABC transporter, nucleotide binding/ATPase protein Atu4729 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 15891423 Common - NTP pyrophosphohydrolase, MutT family Atu3516 170 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 159185803 Common - transcriptional regulator Atu3577 83 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 159186012 Common exoW succinoglycan biosynthesis protein Atu4058 114 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 159185713 Common - ABC transporter, membrane spanning protein (sugar) Atu3370 109 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 159186137 Common - hypothetical protein Atu4375 166 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 159186206 Common - ABC transporter, nucleotide binding/ATPase protein (amino acid) Atu4533 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 15890171 Common - hypothetical protein Atu4819 7 COG1661 COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif General function prediction only 15890899 Common glgX glycogen debranching enzyme Atu4073 124 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 15890785 Common - hypothetical protein Atu4197 39 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 15891744 Common ugpB ABC transporter, substrate binding protein (glycerol-3-phosphate) Atu3185 97 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159186140 Common cy2 cytochrome c2 Atu4379 57 COG3474 COG3474, Cytochrome c2 Energy production and conversion 159185649 Common - hypothetical protein Atu3205 33 COG3257 GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization General function prediction only 15891158 Common ansP L-asparagine permease Atu3792 155 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 15890227 Common - hypothetical protein Atu4766 4 None None None 159185909 Common rbsA ABC transporter, nucleotide binding/ATPase protein (ribose) Atu3818 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 15890317 Common dapA dihydrodipicolinate synthase Atu4675 218 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 159185985 Common - hypothetical protein Atu3994 4 None None None 159186282 Common - ABC transporter, nucleotide binding/ATPase protein (oligopeptide) Atu4701 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 159185925 Common - ABC transporter, nucleotide binding/ATPase protein Atu3869 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 15890391 Common - ABC transporter, membrane spanning protein Atu4597 189 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 15891034 Common - hypothetical protein Atu3929 40 COG3758 COG3758, Uncharacterized protein conserved in bacteria Function unknown 15890488 Common - hypothetical protein Atu4497 4 None None None 15891903 Common - ABC transporter, membrane spanning protein (sugar) Atu3023 152 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 159185640 Common - hypothetical protein Atu3184 127 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 159185769 Common - aldehyde dehydrogenase Atu3498 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 159185686 Common celB celB protein Atu3308 6 COG5373 COG5373, Predicted membrane protein Function unknown 159185988 Common fabH 3-oxoacyl-(acyl carrier protein) synthase II Atu4001 200 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 159185735 Common - hypothetical protein Atu3423 178 COG1959 COG1959, Predicted transcriptional regulator Transcription 159186119 Common impN serine/threonine protein kinase Atu4330 117 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 15890590 Common nnrU denitrification regulatory protein Atu4392 38 COG4094 COG4094, Predicted membrane protein Function unknown 15890126 Common - transcriptional regulator, MarR family Atu4864 123 COG1846 MarR, Transcriptional regulators Transcription 159185932 Common - chemotaxis response regulator Atu3883 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 159186124 Common impB hypothetical protein Atu4342 50 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 159185664 Common selA L-seryl-tRNA(ser) selenium transferase Atu3263 72 COG1921 SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] Amino acid transport and metabolism 159186372 Common celG cellulose synthesis protein Atu8186 5 None None None 17937438 Pathogen - hypothetical protein Atu3733 1 None None None 15890167 Common acaB acetyl-CoA acetyltransferase Atu4823 150 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 15891749 Common - ABC transporter, nucleotide binding/ATPase protein Atu3180 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 15890882 Common cydB cytochrome d oxidase subunit II Atu4092 156 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 15890477 Common - oxoreductase Atu4508 171 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15890930 Common rluA ribosomal large subunit pseudouridine synthase A Atu4041 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 15890599 Common - hypothetical protein Atu4384 9 None None None 15891863 Common - ABC transporter, nucleotide binding/ATPase protein Atu3063 104 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15891218 Common - hypothetical protein Atu3730 81 COG1692 COG1692, Uncharacterized protein conserved in bacteria Function unknown 15891200 Common enhC enhanced entry protein Atu3749 101 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 15890305 Common - ABC transporter, membrane spanning protein (amino acid) Atu4688 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 159186289 Common - two component response regulator Atu4712 216 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 159185702 Common thuA trehalose utilization-related protein Atu3342 19 COG4813 ThuA, Trehalose utilization protein Carbohydrate transport and metabolism 15891153 Common - HlyD family secretion protein Atu3797 165 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 159185620 Common - C4-dicarboxylate-binding protein Atu3137 117 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 159185950 Common - hypothetical protein Atu3917 110 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 15890856 Common - transcriptional regulator, GntR family Atu4118 128 COG1802 GntR, Transcriptional regulators Transcription 159185821 Common tyrC cyclohexadienyl dehydrogenase Atu3611 187 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 15891394 Common - hypothetical protein Atu3547 14 COG5482 COG5482, Uncharacterized conserved protein Function unknown 159186167 Common - hypothetical protein Atu4442 140 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 15890755 Common purF amidophosphoribosyltransferase Atu4227 238 COG0067 GltB, Glutamate synthase domain 1 Amino acid transport and metabolism 159185639 Common - hypothetical protein Atu3182 89 COG1238 COG1238, Predicted membrane protein Function unknown 159186203 Common - hypothetical protein Atu4529 82 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 159185762 Common panC pantoate--beta-alanine ligase Atu3482 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 15891127 Common - hypothetical protein Atu3824 24 None None None 159186023 Common garR 2-hydroxy-3-oxopropionate reductase Atu4085 156 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 15890711 Common - transcriptional regulator, LysR family Atu4271 182 COG0583 LysR, Transcriptional regulator Transcription 15890198 Common bme11 exopolysaccharide production protein Atu4793 97 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 159185999 Common - gluconolactonase precursor Atu4029 79 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 159185838 Common - hypothetical protein Atu3639 9 COG5620 COG5620, Uncharacterized conserved protein Function unknown 15890671 Common soxD sarcosine oxidase delta subunit Atu4311 32 COG4311 SoxD, Sarcosine oxidase delta subunit Amino acid transport and metabolism 15890475 Common iolE hypothetical protein Atu4510 60 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 15891884 Common - ABC transporter, substrate binding protein (dipeptide) Atu3041 194 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15890106 Common - hypothetical protein Atu4882 2 None None None 159185590 Common amaB allantoate amidohydrolase Atu3070 86 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 15890654 Common bexD polysaccharide export protein Atu4329 63 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 159186236 Common - putative oxidoreductase Atu4590 200 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 159185783 Common - polysaccharide biosynthesis associated protein Atu3523 40 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 15891287 Common - acetyltransferase Atu3656 9 COG0456 RimI, Acetyltransferases General function prediction only 159185724 Common - 3-isopropylmalate dehydrogenase Atu3402 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 15891651 Common - ABC transporter, substrate binding protein (sugar) Atu3282 117 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159186308 Common bioA hypothetical protein Atu4761 236 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 15891550 Common prsD rhizobicin secretion Atu3383 249 COG4618 ArpD, ABC-type protease/lipase transport system, ATPase and permease components General function prediction only 159186334 Common bme8 glycosyltransferase Atu4817 99 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15890644 Common impE hypothetical protein Atu4339 23 COG4455 ImpE, Protein of avirulence locus involved in temperature-dependent protein secretion General function prediction only 159186258 Common argH argininosuccinate lyase Atu4651 227 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 15890623 Common thuF ABC transporter, membrane spanning protein (sugar) Atu4360 160 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15890530 Common - ribitol kinase Atu4453 179 COG1069 AraB, Ribulose kinase Energy production and conversion 15891499 Common - ABC transporter, nucleotide binding/ATPase protein (oligopeptide) Atu3436 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 159185613 Common cspA cold shock protein Atu3121 174 COG1278 CspC, Cold shock proteins Transcription 15891540 Common - pseudoazurin Atu3393 25 COG3794 PetE, Plastocyanin Energy production and conversion 159185874 Common tolQ tolQ Protein Atu3717 148 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 15891675 Common - hypothetical protein Atu3258 3 None None None 159185815 Common hbdA 3-hydroxybutyryl-CoA dehydrogenase Atu3597 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 15891715 Common aspC aspartate aminotransferase Atu3217 135 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 159186234 Common - hypothetical protein Atu4587 22 None None None 159185674 Common malF ABC transporter, membrane spanning protein (sugar) Atu3283 150 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 159185800 Common - hypothetical protein Atu3568 12 COG3629 DnrI, DNA-binding transcriptional activator of the SARP family Signal transduction mechanisms 159185907 Common - transcriptional regulator, GntR family Atu3815 138 COG1802 GntR, Transcriptional regulators Transcription 159185661 Common - dehydrogenase Atu3259 163 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 15890621 Common - hypothetical protein Atu4362 23 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 159185725 Common attK2 succinate semialdehyde dehydrogenase Atu3403 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 159185772 Common - enoyl-CoA hydratase Atu3505 138 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 159185758 Common mccB 3-methylcrotonoyl-CoA carboxylase beta subunit Atu3478 143 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 15891414 Pathogen - hypothetical protein Atu3525 1 None None None 15890873 Common - hypothetical protein Atu4101 3 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 159186048 Common - RNA polymerase sigma factor Atu4160 165 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 15891445 Common - sugar kinase Atu3492 48 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 15891241 Common serC phosphoserine aminotransferase Atu3707 87 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 15890958 Common - hypothetical protein Atu4011 99 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 159185915 Pathogen - hypothetical protein Atu3848 1 None None None 159186039 Common - hypothetical protein Atu4136 36 COG3685 COG3685, Uncharacterized protein conserved in bacteria Function unknown 15891900 Common - short chain dehydrogenase Atu3026 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159185958 Common hutU urocanate hydratase Atu3931 97 COG2987 HutU, Urocanate hydratase Amino acid transport and metabolism 159185619 Common - ABC transporter, membrane spanning protein Atu3136 69 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 159185603 Common - hypothetical protein Atu3095 64 COG3865 COG3865, Uncharacterized protein conserved in bacteria Function unknown 15891208 Common - MFS permease Atu3741 61 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 159185719 Common hasR heme receptor Atu3385 72 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 15890230 Common - transcriptional regulator, AsnC family Atu4763 145 COG1522 Lrp, Transcriptional regulators Transcription 159186025 Common - transcriptional regulator Atu4088 37 COG1510 COG1510, Predicted transcriptional regulators Transcription 15890424 Common - hypothetical protein Atu4562 5 None None None 159186201 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu4523 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15891096 Common - hypothetical protein Atu3866 89 COG2308 COG2308, Uncharacterized conserved protein Function unknown 159186163 Common tnp IS5 family transposase Atu4436 56 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 15890977 Common copB copper tolerance protein Atu3992 20 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 15890528 Common - CysZ-like protein Atu4456 22 COG2981 CysZ, Uncharacterized protein involved in cysteine biosynthesis Amino acid transport and metabolism 15891144 Common mdeA methionine gamma-lyase Atu3806 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 159186217 Common - hypothetical protein Atu4555 14 COG4130 COG4130, Predicted sugar epimerase Carbohydrate transport and metabolism 15890550 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu4433 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159186082 Common - hypothetical protein Atu4253 24 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 15890848 Common - ABC transporter, membrane spanning protein (branched chain amino acid) Atu4127 139 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 159186366 Common - hypothetical protein Atu8042 7 None None None 15890505 Common - hypothetical protein Atu4480 48 COG3576 COG3576, Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase General function prediction only 159186274 Common - ABC transporter, substrate binding protein (amino acid) Atu4687 176 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 159185611 Common - oxidoreductase Atu3116 101 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15891882 Common - hydantoinase beta subunit-like protein Atu3043 113 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 159186015 Common - hypothetical protein Atu4062 3 None None None 159185667 Common - ABC transporter, membrane spanning protein (dipeptide) Atu3268 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15891783 Common - proline dipeptidase Atu3146 84 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 15891137 Common fabG 3-oxoacyl-(acyl-carrier protein) reductase Atu3813 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15890557 Common adeC adenine deaminase Atu4426 76 COG1001 AdeC, Adenine deaminase Nucleotide transport and metabolism 15891523 Common - ABC transporter, membrane spanning protein Atu3410 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15890609 Common - hypothetical protein Atu4374 63 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 159186374 Common - hypothetical protein Atu8192 14 None None None 15891844 Common - hypothetical protein Atu8183 6 COG5612 COG5612, Predicted integral membrane protein Function unknown 159185770 Common - ABC transporter, membrane spanning protein Atu3503 218 COG0555 CysU, ABC-type sulfate transport system, permease component Posttranslational modification, protein turnover, chaperones 15890929 Common - hypothetical protein Atu4042 130 COG1739 COG1739, Uncharacterized conserved protein Function unknown 15891574 Common - ABC transporter, membrane spanning protein (amino acid) Atu3359 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 15891079 Common - hypothetical protein Atu3884 57 COG3741 HutG, N-formylglutamate amidohydrolase Amino acid transport and metabolism 15890092 Pathogen - hypothetical protein Atu4895 1 None None None 159186224 Common - ABC transporter, membrane spanning protein Atu4570 220 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 159186356 Common - hypothetical protein Atu4884 23 None None None 15890633 Common - hypothetical protein Atu4350 4 None None None 15891587 Common exsB succinoglycan biosynthesis regulator Atu3346 177 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 159185893 Common hemH ferrochelatase Atu3771 163 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 159185908 Common fdh D-threo-aldose 1-dehydrogenase Atu3816 103 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 159185700 Common thuE ABC transporter, substrate binding protein (trehalose/maltose) Atu3338 98 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15891563 Common - hypothetical protein Atu3369 118 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 159186342 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu4843 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 15890378 Common - sugar nucleotide epimerase/dehydratase Atu4610 231 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 15891758 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu3171 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 159185658 Common gatA hypothetical protein Atu3243 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 15891716 Common - ABC transporter, nucleotide binding/ATPase protein (oligopeptide) Atu3216 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 15890762 Common - short-chain dehydrogenase Atu4220 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 15891708 Common - ABC transporter, membrane spanning protein (ribose) Atu3224 112 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 15891852 Common - short chain dehydrogenase Atu3074 235 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 17937135 Pathogen - hypothetical protein Atu3427 1 None None None 17936961 Pathogen - hypothetical protein Atu3250 1 None None None 159186060 Common - transcriptional regulator, TetR family Atu4199 45 COG1309 AcrR, Transcriptional regulator Transcription 159185633 Common - sorbitol dehydrogenase Atu3164 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159185975 Common - dehydrogenase Atu3964 170 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15890211 Common - two component sensor kinase Atu4781 214 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 159186326 Common - hypothetical protein Atu4800 14 COG4310 COG4310, Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain General function prediction only 159185946 Common - hypothetical protein Atu3912 115 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 15891278 Common - hypothetical protein Atu3666 27 COG1959 COG1959, Predicted transcriptional regulator Transcription 15890860 Common dppB ABC transporter, membrane spanning protein (dipeptide) Atu4114 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159185779 Common - acetyltransferase Atu3517 37 COG0456 RimI, Acetyltransferases General function prediction only 17936712 Pathogen - hypothetical protein Atu3000 1 None None None 159185847 Common - hypothetical protein Atu3661 5 None None None 159185708 Common - ABC transporter, substrate binding protein (amino acid) Atu3357 139 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 15890900 Common nodN nodulation protein N Atu4072 66 COG2030 MaoC, Acyl dehydratase Lipid metabolism 159186319 Common - hypothetical protein Atu4788 8 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 15891375 Pathogen - hypothetical protein Atu3566 1 None None None 159185623 Common - hypothetical protein Atu3143 133 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 15891334 Common ftsE cell division ATP-binding protein Atu3606 249 COG2884 FtsE, Predicted ATPase involved in cell division Cell division and chromosome partitioning 15891446 Common - hypothetical protein Atu3491 35 COG3254 COG3254, Uncharacterized conserved protein Function unknown 15891120 Common - hypothetical protein Atu3832 2 None None None 15890694 Common - NonF-related protein Atu4287 90 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 159185696 Common mclA methyl-accepting chemotaxis protein Atu3330 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 159186178 Common - hypothetical protein Atu4472 3 None None None 15891701 Common - hypothetical protein Atu8184 32 COG3759 COG3759, Predicted membrane protein Function unknown 159186097 Common - hypothetical protein Atu4286 84 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 159185593 Common - transcriptional regulator, TetR family Atu3075 95 COG1309 AcrR, Transcriptional regulator Transcription 159185823 Common gloB glyoxalase II Atu3614 196 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 15890832 Common - hypothetical protein Atu4143 3 None None None 15890385 Common - IS3 family transposase Atu4603 31 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 15890324 Common - HlyD family secretion protein Atu4666 139 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 15890358 Common - ATP-dependent DNA ligase Atu4632 77 COG3285 COG3285, Predicted eukaryotic-type DNA primase DNA replication, recombination, and repair 15891465 Common bkdA2 2-oxoisovalerate dehydrogenase beta subunit Atu3472 217 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 15890099 Common - hypothetical protein Atu4888 5 None None None 159185563 Pathogen - hypothetical protein Atu3005 1 None None None 15891592 Common thuK ABC transporter, nucleotide binding/ATPase protein (trehalose/maltose) Atu3341 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15890187 Common - two component sensor kinase/response regulator hybrid Atu4805 221 COG4566 TtrR, Response regulator Signal transduction mechanisms 159186198 Common livF ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid) Atu4515 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 15890780 Common - methyltransferase Atu4202 82 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 15890392 Common - hypothetical protein Atu4596 75 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 159185920 Pathogen - hypothetical protein Atu3858 1 None None None 159185579 Common - oxidoreductase Atu3046 107 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 159185943 Common nasT two component response regulator Atu3907 106 COG3707 AmiR, Response regulator with putative antiterminator output domain Signal transduction mechanisms 15890487 Common - hypothetical protein Atu4498 44 COG2215 COG2215, ABC-type uncharacterized transport system, permease component General function prediction only 159185722 Common - 2-hydroxyacid dehydrogenase Atu3399 198 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 15891395 Common - hypothetical protein Atu3546 7 None None None 159186123 Common impD hypothetical protein Atu4340 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 159185825 Common rpmB 50S ribosomal protein L28 Atu3617 149 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 15890390 Common - ABC transporter, nucleotide binding/ATPase protein Atu4598 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 15891484 Common - arylesterase Atu3454 13 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 15891193 Common - hypothetical protein Atu3757 23 None None None 159185648 Common - RND multidrug efflux membrane permease Atu3203 147 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 15890400 Common - sodium bile acid symporter family protein Atu4588 78 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 15890284 Common fdsD NAD-dependent formate dehydrogenase delta subunit Atu4709 21 None None None 15891836 Common - DNA polymerase III subunit epsilon Atu3090 73 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 15891216 Common - hemolysin Atu3732 219 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 15891159 Common ansA L-asparaginase Atu3791 134 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 15891693 Common - ABC transporter, substrate binding protein (sugar) Atu3239 95 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15891222 Common - flavin dependant oxidoreductase Atu3726 111 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 159186054 Common clpB ATP-dependent Clp protease, ATP-binding subunit Atu4177 218 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 15891541 Common - methyltransferase Atu3392 191 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 159185986 Common - transcriptional regulator, AraC family Atu3995 35 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 159185855 Common - polyketide synthetase, siderophore biosynthesis protein Atu3681 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 15890591 Common - hypothetical protein Atu8040 3 None None None 159186118 Pathogen - hypothetical protein Atu4327 1 None None None 159185687 Common - hypothetical protein Atu3313 7 None None None 159186145 Common norQ nitric oxide reductase NorQ protein Atu4387 79 COG0714 COG0714, MoxR-like ATPases General function prediction only 159185653 Common - transcriptional regulator, AraC family Atu3227 126 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 17937360 Pathogen - hypothetical protein Atu3653 1 None None None 15890275 Common - transcriptional regulator, GntR family Atu4718 139 COG2186 FadR, Transcriptional regulators Transcription 159185606 Common - ABC transporter, substrate binding protein (sugar) Atu3106 38 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15890668 Common glyA serine hydroxymethyltransferase Atu4314 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 15891198 Common - hypothetical protein Atu3751 39 COG0730 COG0730, Predicted permeases General function prediction only 15891557 Common - ABC transporter, substrate binding protein (peptide) Atu3375 197 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15891480 Common - ABC transporter, membrane spanning protein Atu3458 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159186361 Pathogen - hypothetical protein Atu8029 1 None None None 159185643 Common speF ornithine decarboxylase Atu3196 216 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 15891004 Common - oxidoreductase Atu3965 129 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15890699 Common - ABC transporter, membrane spanning protein (amino acid) Atu4282 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 159185757 Common acd acyl-CoA dehydrogenase Atu3477 168 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 159185746 Common - ABC transporter, substrate binding protein (oligopeptide) Atu3455 198 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15891735 Common - acetyltransferase Atu3194 81 COG3153 COG3153, Predicted acetyltransferase General function prediction only 15890337 Common - ABC transporter, membrane spanning protein (sugar) Atu4653 160 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 159186069 Common - transcriptional regulator, TetR family Atu4217 55 COG1309 AcrR, Transcriptional regulator Transcription 15890278 Pathogen - hypothetical protein Atu8199 1 None None None 15891030 Common hutH histidine ammonia-lyase Atu3933 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 15891474 Common - dehydrogenase Atu3464 228 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 159186007 Common exoN UTP-glucose-1-phosphate uridylyltransferase Atu4050 226 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 15890110 Pathogen - hypothetical protein Atu8043 1 None None None 159186071 Common - transcriptional regulator Atu4226 125 COG1396 HipB, Predicted transcriptional regulators Transcription 15890452 Common - ABC transporter, substrate binding protein (amino acid) Atu4534 169 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 159186221 Common - hypothetical protein Atu4561 21 COG4225 COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins General function prediction only 15890884 Common cydC ABC transporter, nucleotide binding/ATPase protein Atu4090 247 COG4987 CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 15891201 Common suhB extragenic suppressor protein SuhB Atu3748 215 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 159186022 Common - transcriptional regulator, AsnC family Atu4082 136 COG1522 Lrp, Transcriptional regulators Transcription 159185885 Common - hypothetical protein Atu3747 28 None None None 15891145 Common myg1 hypothetical protein Atu3805 16 COG4286 COG4286, Uncharacterized conserved protein related to MYG1 family Function unknown 159185916 Common - resolvase Atu3849 80 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 15891883 Common - hypothetical protein Atu3042 32 COG3535 COG3535, Uncharacterized conserved protein Function unknown 15890531 Common - hypothetical protein Atu4452 138 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 15891598 Pathogen - hypothetical protein Atu8031 1 None None None 159185782 Common - glucans biosynthesis protein Atu3522 24 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 15891626 Common celA cellulose synthase Atu3309 143 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15891869 Common crdS beta 1,3 glucan synthase catalytic subunit Atu3056 93 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15891359 Common pccA propionyl-coenzyme A carboxylase, alpha polypeptide Atu3581 237 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 15890933 Common - DNA topoisomerase Atu4036 45 COG3569 COG3569, Topoisomerase IB DNA replication, recombination, and repair 15890774 Common - ABC transporter, substrate binding protein (sugar) Atu4208 41 COG2182 MalE, Maltose-binding periplasmic proteins/domains Carbohydrate transport and metabolism 15890861 Common dppA ABC transporter, substrate binding protein (dipeptide) Atu4113 210 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15891911 Common - hypothetical protein Atu3015 8 COG0645 COG0645, Predicted kinase General function prediction only 159186296 Common - hypothetical protein Atu4733 20 COG5430 COG5430, Uncharacterized secreted protein Function unknown 159185748 Common - ABC transporter, membrane spanning protein Atu3459 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15891606 Common - aldehyde dehydrogenase-like protein Atu3328 78 COG1396 HipB, Predicted transcriptional regulators Transcription 15890924 Common - two component sensor kinase/response regulator hybrid Atu4047 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 15890469 Common livM ABC transporter, membrane spanning protein (branched chain amino acid) Atu4517 126 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 159186154 Common rspD ABC transporter, nucleotide binding/ATPase protein (bacteriocin) Atu4413 249 COG4618 ArpD, ABC-type protease/lipase transport system, ATPase and permease components General function prediction only 15890260 Common - fimbrial chaperone Atu4732 28 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 15890322 Common - ABC transporter, membrane spanning protein Atu4668 127 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 15890670 Common soxA sarcosine oxidase alpha subunit Atu4312 184 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 15890184 Common amsJ exopolysaccharide synthesis protein Atu4808 14 COG2327 WcaK, Uncharacterized conserved protein Function unknown 159185965 Common - hypothetical protein Atu3948 55 COG3616 COG3616, Predicted amino acid aldolase or racemase Amino acid transport and metabolism 15890672 Common soxB sarcosine oxidase beta subunit Atu4310 88 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 159185570 Common - ABC transporter, membrane spanning protein (sugar) Atu3024 15 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159185998 Common - recombination regulator RecX Atu4028 11 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 15891217 Common - 5-formyltetrahydrofolate cyclo-ligase Atu3731 182 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 15891862 Common - ABC transporter, nucleotide binding/ATPase protein Atu3064 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 15890161 Common - hypothetical protein Atu4830 25 COG5654 COG5654, Uncharacterized conserved protein Function unknown 15890521 Common talB transaldolase B Atu4464 156 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 15891109 Common - hypothetical protein Atu3845 2 None None None 159185638 Common - hypothetical protein Atu3181 128 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 15890795 Pathogen - hypothetical protein Atu4185 1 None None None 159186089 Common - RhtB family transporter Atu4268 116 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 15891730 Common - ABC transporter, nucleotide binding/ATPase protein (ribose) Atu3200 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 159185763 Common - hypothetical protein Atu3484 31 COG4952 COG4952, Predicted sugar isomerase Cell envelope biogenesis, outer membrane 15890733 Common - ABC transporter, nucleotide binding/ATPase protein (sugars) Atu4249 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 159186166 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu4440 219 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159185927 Common - hypothetical protein Atu3873 42 COG1846 MarR, Transcriptional regulators Transcription 15891726 Common - GGDEF family protein Atu3204 175 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 15891659 Common - AcrB/AcrD/AcrF family protein Atu3274 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 159185714 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu3371 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 15891807 Common - hypothetical protein Atu3119 173 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15890199 Common - hypothetical protein Atu4792 3 None None None 159185822 Common - hypothetical protein Atu3613 72 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 159186030 Common rpsA 30S ribosomal protein S1 Atu4104 219 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 15890151 Common deoR transcriptional regulator, DeoR family Atu4841 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 15891404 Common - ABC transporter, nucleotide binding/ATPase protein Atu3536 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 15890742 Common - alkanal monooxygenase alpha chain Atu4240 102 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 15891752 Common rnhA ribonuclease H Atu3177 164 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 159186204 Common - transcriptional regulator, TetR family Atu4530 80 COG1309 AcrR, Transcriptional regulator Transcription 159186241 Common - hypothetical protein Atu4606 164 COG3754 RgpF, Lipopolysaccharide biosynthesis protein Cell envelope biogenesis, outer membrane 15891099 Pathogen - hypothetical protein Atu3862 1 None None None 15891401 Pathogen - hypothetical protein Atu3540 1 None None None 17936719 Pathogen - hypothetical protein Atu3008 1 None None None 15891679 Common - ABC transporter, nucleotide binding/ATPase protein (dicarboxylate) Atu3254 48 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 15891680 Common - ABC transporter, substrate binding protein Atu3253 102 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 159185709 Common - ABC transporter, membrane spanning protein (amino acid) Atu3358 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 17937551 Pathogen - hypothetical protein Atu3846 1 None None None 15890552 Common - ABC transporter, substrate binding protein (oligopeptide) Atu4431 194 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15890721 Common - ABC transporter, nucleotide binding/ATPase protein Atu4261 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 159186253 Common - hypothetical protein Atu4640 5 None None None 15890853 Common - transcriptional regulator, LysR family Atu4122 167 COG0583 LysR, Transcriptional regulator Transcription 15890880 Common - hypothetical protein Atu4094 18 None None None 15890701 Common - short-chain dehydrogenase Atu4280 238 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 15890430 Common purR transcriptional regulator, LacI family Atu4556 126 COG1609 PurR, Transcriptional regulators Transcription 15891230 Common - hypothetical protein Atu3718 124 COG0824 FcbC, Predicted thioesterase General function prediction only 15890564 Common - transcriptional regulator, LysR family Atu4419 180 COG0583 LysR, Transcriptional regulator Transcription 15891922 Common - hypothetical protein Atu3001 3 None None None 159185867 Common - hypothetical protein Atu3704 30 COG4645 COG4645, Uncharacterized protein conserved in bacteria Function unknown 15891645 Common - hydroxyethylthiazole kinase Atu3288 77 COG2145 ThiM, Hydroxyethylthiazole kinase, sugar kinase family Coenzyme metabolism 15891594 Common thuF ABC transporter, membrane spanning protein (trehalose/maltose) Atu3339 195 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 159186079 Common - ABC transporter, membrane spanning protein (polyamine) Atu4244 142 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 15891270 Common - peptide synthetase, siderophore biosynthesis protein Atu3675 208 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 15891468 Common pgm phosphoglyceromutase Atu3469 125 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 15890753 Common gltB glutamate synthase large subunit Atu4229 165 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 15890137 Pathogen - hypothetical protein Atu4854 1 None None None 159185669 Common - glycosyltransferase Atu3271 149 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15890836 Common - hypothetical protein Atu4139 9 None None None 15891380 Pathogen - hypothetical protein Atu3561 1 None None None 15890479 Pathogen - hypothetical protein Atu4506 1 None None None 159186066 Common - ABC transporter, membrane spanning protein (sugars) Atu4210 155 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 159185940 Common nirB nitrite reductase large subunit Atu3902 208 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 17937403 Common - hypothetical protein Atu3696 101 COG2835 COG2835, Uncharacterized conserved protein Function unknown 15891369 Pathogen - hypothetical protein Atu8113 1 None None None 15891175 Common - hypothetical protein Atu3775 15 None None None 159185947 Common amyA cytoplasmic alpha-amylase Atu3914 47 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 15891490 Common - monooxygenase Atu3446 82 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 159185701 Common thuG ABC transporter, membrane spanning protein (trehalose/maltose) Atu3340 177 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15891237 Common mesJ hypothetical protein Atu3711 211 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 159186046 Common - aldehyde dehydrogenase Atu4153 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 15891794 Common - ABC transporter, membrane spanning protein Atu3135 122 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 15891436 Common - ABC transporter, membrane spanning protein Atu3502 230 COG4208 CysW, ABC-type sulfate transport system, permease component Inorganic ion transport and metabolism 15891017 Common - oxidoreductase Atu3952 113 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 15891741 Common ugpC ABC transporter, nucleotide binding/ATPase protein (glycerol-3-phosphate) Atu3188 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15890445 Common pcaC carboxymuconolactone decarboxylase Atu4541 82 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 159186332 Common bme2 hypothetical protein Atu4812 24 COG1434 COG1434, Uncharacterized conserved protein Function unknown 15891709 Common - ABC transporter, nucleotide binding/ATPase protein (ribose) Atu3223 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 15890946 Common fhuB iron-hydroxamate transporter permease subunit Atu4024 156 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 15891277 Common panD aspartate alpha-decarboxylase Atu3667 131 COG0853 PanD, Aspartate 1-decarboxylase Coenzyme metabolism 15891308 Common - hypothetical protein Atu3632 73 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 159186239 Common - transcriptional regulator, IclR family Atu4599 75 COG1414 IclR, Transcriptional regulator Transcription 159186228 Common - transcriptional regulator, ROK family Atu4576 128 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 15891254 Common fecE ABC transporter, nucleotide binding/ATPase protein (iron (III) dicitrate) Atu3691 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 15891268 Common - polyketide synthase, siderophore biosynthesis protein Atu3677 236 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 159186327 Common - NAD-dependent epimerase/dehydratase Atu4801 226 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 15890928 Common - hypothetical protein Atu4043 115 COG2081 COG2081, Predicted flavoproteins General function prediction only 159186271 Common - putative malate dehydrogenase Atu4676 67 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 15890612 Common - ABC transporter, membrane spanning protein (sugar) Atu4371 106 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 159186216 Common iolG myo-inositol 2-dehydrogenase Atu4554 162 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 159186297 Common acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase Atu4734 162 COG1049 AcnB, Aconitase B Energy production and conversion 15890998 Common ilvD dihydroxy-acid dehydratase Atu3971 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 15891861 Common - ABC transporter, membrane spanning protein (sugar) Atu3065 137 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 159185789 Common - hypothetical protein Atu3553 4 None None None 159185875 Common mutT MutT/nudix family protein Atu3719 50 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 159185791 Pathogen - hypothetical protein Atu3555 1 None None None 159185697 Common - hypothetical protein Atu3332 44 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 15890857 Common dppF ABC transporter, nucleotide binding/ATPase protein (dipeptide) Atu4117 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 159185726 Common hadL haloalkanoic acid dehalogenase Atu3405 42 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 15890527 Common - endonuclease III Atu4457 239 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 15890247 Common - ABC transporter, membrane spanning protein (sugar) Atu4746 126 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 159186233 Common sodBII superoxide dismutase Atu4583 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 15890380 Common - hypothetical protein Atu4608 21 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 15890940 Common - ABC transporter, membrane spanning protein (sugar) Atu4030 110 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 15891083 Common - ABC transporter, membrane spanning protein (sugar) Atu3879 112 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 159185856 Common - peptide synthetase, siderophore biosynthesis protein Atu3683 216 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 159186373 Common - hypothetical protein Atu8188 19 COG5653 COG5653, Protein involved in cellulose biosynthesis (CelD) Cell envelope biogenesis, outer membrane 15890558 Common iunH inosine-uridine preferring nucleoside hydrolase Atu4425 84 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 15891418 Common - permease Atu3521 82 None None None 159185767 Common - ABC transporter, membrane spanning protein Atu3490 124 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 159186213 Common pcaF beta-ketoadipyl CoA thiolase Atu4549 170 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 15890718 Common - transcriptional regulator, LysR family Atu4264 190 COG0583 LysR, Transcriptional regulator Transcription 159185628 Common - ABC transporter, substrate binding protein Atu3158 102 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 15890761 Common - hypothetical protein Atu4221 11 COG4583 COG4583, Sarcosine oxidase gamma subunit Amino acid transport and metabolism 159185760 Common hmgL hydroxymethylglutaryl-CoA lyase Atu3480 178 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 15890803 Common prfA peptide chain release factor 1 Atu4174 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 15891572 Common - hypothetical protein Atu3361 50 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 159185673 Common - ABC transporter, nucleotide binding/ATPase protein Atu3281 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15891894 Common - hypothetical protein Atu3031 2 None None None 159185660 Common - ABC transporter, membrane spanning protein (dicarboxylate) Atu3255 134 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 15890408 Common - hypothetical protein Atu4580 2 None None None 159185846 Common - transcriptional regulator, MerR family Atu3658 66 COG0789 SoxR, Predicted transcriptional regulators Transcription 15890583 Common - hypothetical protein Atu4399 2 None None None 159186246 Common - ABC transporter, substrate binding protein (oligopeptide) Atu4626 198 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 159185860 Common fecD ABC transporter, membrane spanning protein (iron (III) dicitrate) Atu3690 192 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 159186187 Common - GGDEF family protein Atu4490 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 159185666 Common - dihydroorotase Atu3266 37 COG3964 COG3964, Predicted amidohydrolase General function prediction only 159186208 Common - ABC transporter, membrane spanning protein (amino acid) Atu4537 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 15891165 Common kdpE two component response regulator Atu3786 216 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 159185670 Common pssN exopolysaccharide export protein Atu3272 70 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 159185934 Common - hypothetical protein Atu3888 55 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 15891778 Common - ABC transporter, substrate binding protein (sugar) Atu3151 89 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159185753 Common bkdB branched-chain alpha-keto acid dehydrogenase subunit E2 Atu3471 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 159186280 Common trzA N-ethylammeline chlorohydrolase Atu4699 115 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 159185587 Common - hypothetical protein Atu3057 11 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15891209 Common - fructose bisphosphate aldolase Atu3740 32 COG3588 COG3588, Fructose-1,6-bisphosphate aldolase Carbohydrate transport and metabolism 15891901 Common - oligo alginate lyase Atu3025 8 None None None 15891052 Common - hypothetical protein Atu3910 100 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 15890551 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu4432 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159185959 Common - hypothetical protein Atu3932 57 COG3741 HutG, N-formylglutamate amidohydrolase Amino acid transport and metabolism 15890828 Common lspL UDP-glucuronic acid epimerase Atu4148 232 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 159185778 Common - hypothetical protein Atu3515 5 None None None 159186047 Common - ABC transporter, substrate binding protein (aliphatic sulfonate) Atu4154 74 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 159185997 Common fhuC ABC transporter, nucleotide binding/ATPase protein (ferrichrome) Atu4025 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 159186259 Common xylR transcriptional regulator, ROK family Atu4655 174 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 159186287 Common - MFS permease Atu4710 82 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 15890582 Common - ferrienterobactin-like protein Atu4400 84 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 159186306 Pathogen - hypothetical protein Atu4751 3 None None None 159185716 Common - beta-lactamase Atu3376 21 COG2367 PenP, Beta-lactamase class A Defense mechanisms 159185902 Common proX ABC transporter, substrate binding protein (proline/glycine betaine) Atu3800 50 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 159185637 Common - ABC transporter, membrane spanning protein Atu3179 184 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 159186169 Common - ABC transporter, substrate binding protein (sorbitol) Atu4447 110 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159186155 Common rspE ABC transporter, membrane spanning protein (bacteriocin) Atu4414 131 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 15890768 Common cspA cold shock protein Atu4214 169 COG1278 CspC, Cold shock proteins Transcription 15891015 Common - ABC transporter, membrane spanning protein Atu3954 148 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 15890717 Common - hypothetical protein Atu4265 5 None None None 15890757 Common glxA transcriptional regulator, AraC family Atu4225 85 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 15891549 Common - hypothetical protein Atu3384 2 None None None 159186019 Common exoC phosphoglucomutase Atu4074 236 COG0033 Pgm, Phosphoglucomutase Carbohydrate transport and metabolism 15891893 Pathogen - hypothetical protein Atu3032 2 None None None 17938216 Pathogen - hypothetical protein Atu4527 1 None None None 159186199 Common livH ABC transporter, membrane spanning protein (branched chain amino acid) Atu4518 147 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 15891105 Pathogen - hypothetical protein Atu3850 1 None None None 15891125 Common - transcriptional regulator, LysR family Atu3827 190 COG0583 LysR, Transcriptional regulator Transcription 15891151 Common hutC transcriptional regulator, GntR family Atu3799 133 COG2188 PhnF, Transcriptional regulators Transcription 15890250 Common - transcriptional regulator, LacI family Atu4743 115 COG1609 PurR, Transcriptional regulators Transcription 15891173 Common galU UTP-glucose-1-phosphate uridylyltransferase Atu3778 230 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 159185886 Common thiE thiamine-phosphate pyrophosphorylase Atu3750 45 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 15890827 Common ugdH UDP-glucose 6-dehydrogenase Atu4149 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 15891066 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu3896 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 159185996 Common fhuD ABC transporter, substrate binding protein (ferrichrome) Atu4023 57 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 15890169 Common fabG 3-oxoacyl-(acyl-carrier protein) reductase Atu4821 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159185622 Common kduI 5-keto-4-deoxyuronate isomerase Atu3142 27 COG3717 KduI, 5-keto 4-deoxyuronate isomerase Carbohydrate transport and metabolism 159185588 Common - Na+/H+ antiporter Atu3059 100 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 15890152 Common - hypothetical protein Atu4840 2 None None None 159185796 Common greB transcription elongation factor regulatory protein Atu3563 94 COG0782 GreA, Transcription elongation factor Transcription 159185812 Common - hypothetical protein Atu3593 130 COG2096 COG2096, Uncharacterized conserved protein Function unknown 15890852 Common - ABC transporter, substrate binding protein (branched chain amino acid) Atu4123 97 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 15890220 Common - two component response regulator Atu4773 166 COG4566 TtrR, Response regulator Signal transduction mechanisms 15891717 Common - ABC transporter, nucleotide binding/ATPase protein (oligopeptide) Atu3215 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15890737 Common - ABC transporter, membrane spanning protein (polyamine) Atu4245 181 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 15890157 Common - glucose-6-phosphate 1-dehydrogenase Atu4835 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 15891625 Common - hypothetical protein Atu8187 3 None None None 15891146 Common - permease Atu3804 169 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 159186099 Common - transcriptional regulator, LysR family Atu4291 155 COG0583 LysR, Transcriptional regulator Transcription 159186270 Common - transcriptional regulator, GntR family Atu4674 121 COG1802 GntR, Transcriptional regulators Transcription 159186001 Common - two component sensor kinase Atu4034 92 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 15891658 Common ialB invasion associated protein B Atu3275 7 COG5342 COG5342, Invasion protein B, involved in pathogenesis General function prediction only 159186315 Common - hypothetical protein Atu4780 20 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 15891517 Common - ABC transporter, substrate binding protein Atu3416 108 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 159186252 Common nolF nolF secretion protein Atu4637 172 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 15890261 Common - fimbrial usher protein Atu4731 38 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 159185681 Common dctB two component sensor kinase for C4-dicarboxylate transport Atu3297 223 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 15890625 Common - ABC transporter, nucleotide binding/ATPase protein Atu4358 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 159185954 Common repA replication protein A Atu3924 216 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 15890642 Common impC hypothetical protein Atu4341 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 159186070 Common - multidrug efflux protein Atu4218 130 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 159185866 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Atu3703 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 159186100 Common - chloramphenicol resistance protein Atu4292 215 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 159185836 Common - amidohydrolase Atu3635 171 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 15890640 Common impA hypothetical protein Atu4343 29 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 15890465 Common - transcriptional regulator, AraC family Atu4521 78 COG3708 COG3708, Uncharacterized protein conserved in bacteria Function unknown 159185784 Common - hypothetical protein Atu3527 48 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 15890798 Common - hypothetical protein Atu4178 189 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 15891607 Pathogen - hypothetical protein Atu8030 1 None None None 159185736 Common - hypothetical protein Atu3424 11 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 159186035 Common mmsB 3-hydroxyisobutyrate dehydrogenase Atu4129 169 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 15890804 Common ptsI phosphoenolpyruvate-protein phosphotransferase Atu4173 235 COG3605 PtsP, Signal transduction protein containing GAF and PtsI domains Signal transduction mechanisms 15890597 Common norD nitric oxide reductase NorD protein Atu4386 45 COG4548 NorD, Nitric oxide reductase activation protein Inorganic ion transport and metabolism 15890508 Common - transcriptional regulator, TetR family Atu4477 138 COG1309 AcrR, Transcriptional regulator Transcription 159185610 Common - ABC transporter, substrate binding protein (sugar) Atu3114 66 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15891342 Common dsbE thiol:disulfide interchange protein Atu3598 136 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 159185654 Common - hypothetical protein Atu3235 60 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 15891215 Common - hypothetical protein Atu8191 31 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 15891762 Common agaZ tagatose 6-phosphate kinase Atu3167 32 COG4573 GatZ, Predicted tagatose 6-phosphate kinase Carbohydrate transport and metabolism 15891310 Common accA acetyl-CoA carboxylase carboxyltransferase subunit alpha Atu3630 178 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 17938300 Common tnp transposase Atu4611 3 None None None 15890739 Common - ABC transporter, substrate binding protein (polyamine) Atu4243 72 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 15891621 Common - cellulose synthase Atu3314 77 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 159185843 Common - hypothetical protein Atu3652 19 None None None 15890114 Common - putative oxidoreductase Atu4876 204 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 15890145 Common rbsk ribokinase Atu4847 183 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 159186135 Common - hypothetical protein Atu4368 67 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 159185983 Common - hypothetical protein Atu3982 101 COG1574 COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 159186345 Common deoC 2-deoxyribose-5-phosphate aldolase Atu4848 129 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 15891814 Common - ABC transporter, membrane spanning protein (sugar) Atu3112 160 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 159186129 Common - hypothetical protein Atu4353 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 15891533 Common - hypothetical protein Atu3400 28 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 15891605 Common bioA beta alanine--pyruvate transaminase Atu3329 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 15890336 Common - ABC transporter, substrate binding protein (sugar) Atu4654 117 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15891619 Common - dTDP-glucose 4-6-dehydratase Atu3316 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 159186122 Common impF hypothetical protein Atu4338 18 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 15891077 Common pldB lysophospholipase Atu3886 59 COG2267 PldB, Lysophospholipase Lipid metabolism 159185566 Common gpmB phosphoglyceromutase Atu3016 96 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 15890817 Pathogen - hypothetical protein Atu4161 1 None None None 15891804 Common - hypothetical protein Atu3124 2 None None None 15890897 Common glgA glycogen synthase Atu4075 140 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 17937543 Pathogen - hypothetical protein Atu3838 1 None None None 15890315 Common - ABC transporter, substrate binding protein (amino acid) Atu4678 160 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 15890255 Common cat chloramphenicol acetyltransferase Atu4738 160 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 15891036 Common - hypothetical protein Atu3927 66 COG3616 COG3616, Predicted amino acid aldolase or racemase Amino acid transport and metabolism 15890533 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu4450 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 17937561 Pathogen - hypothetical protein Atu3856 1 None None None 159186055 Pathogen - hypothetical protein Atu4183 1 None None None 15891461 Common - transcriptional regulator, AsnC family Atu3476 154 COG1522 Lrp, Transcriptional regulators Transcription 159186363 Common - hypothetical protein Atu8033 2 None None None 159186341 Common - ABC transporter, substrate binding protein (sugar) Atu4842 83 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159185964 Common ordL oxidoreductase Atu3947 121 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 159185646 Common - ABC transporter, membrane spanning protein (ribose) Atu3199 113 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 15891909 Common - phosphoglyceromutase Atu3017 10 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 15890376 Common wbbL glycosyltransferase Atu4614 112 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 15890235 Common arcB ornithine cyclodeaminase Atu4758 90 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 15890679 Common - hypothetical protein Atu4303 52 COG2524 COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains Transcription 159185895 Common - hypothetical protein Atu3777 19 COG5338 COG5338, Uncharacterized protein conserved in bacteria Function unknown 159185565 Pathogen - hypothetical protein Atu3012 3 None None None 15890638 Common - hypothetical protein Atu4345 29 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 159186247 Common - hypothetical protein Atu4627 2 None None None 15891409 Common fabG 3-oxoacyl-(acyl-carrier-protein) reductase Atu3531 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159185631 Common - transcriptional regulator, LacI family Atu3162 123 COG1609 PurR, Transcriptional regulators Transcription 15890444 Common pcaD beta-ketoadipate enol-lactone hydrolase Atu4542 179 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 159185948 Common soxR transcriptional regulator, MerR family Atu3915 53 COG0789 SoxR, Predicted transcriptional regulators Transcription 15891491 Common - hippurate hydrolase Atu3445 172 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 159186115 Common rbsC ABC transporter, membrane spanning protein (ribose) Atu4322 112 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 15891555 Common - ABC transporter, nucleotide binding/ATPase protein (peptide) Atu3377 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 15890869 Common - hypothetical protein Atu4105 2 None None None 15891494 Common - nitrilotriacetate monooxygenase Atu3441 70 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 159186324 Common - hypothetical protein Atu4796 21 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 15891742 Common ugpE ABC transporter, membrane spanning protein (glycerol-3-phosphate) Atu3187 144 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 159186156 Common - hypothetical protein Atu4415 73 COG3211 PhoX, Predicted phosphatase General function prediction only 159186045 Common gcvA transcriptional regulator, LysR family Atu4151 172 COG0583 LysR, Transcriptional regulator Transcription 159186183 Pathogen - hypothetical protein Atu4484 1 None None None 17937481 Pathogen - hypothetical protein Atu3776 1 None None None 15891392 Common - hypothetical protein Atu3549 7 COG2327 WcaK, Uncharacterized conserved protein Function unknown 159186358 Common - hypothetical protein Atu4892 8 COG4889 COG4889, Predicted helicase General function prediction only 15890692 Common adhC alcohol dehydrogenase Atu4289 188 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 15891280 Common ditI short-chain dehydrogenase Atu3665 226 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15891702 Common - hypothetical protein Atu3230 27 COG4544 COG4544, Uncharacterized conserved protein Function unknown 159186185 Common - nitroreductase Atu4486 99 COG0778 NfnB, Nitroreductase Energy production and conversion 15890102 Common - hypothetical protein Atu8201 4 COG5475 COG5475, Uncharacterized small protein Function unknown 15891671 Common - ABC transporter, nucleotide binding/ATPase protein Atu3262 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 15891791 Common - hypothetical protein Atu3138 30 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 159185845 Common - antioxidant enzyme Atu3655 70 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 159185929 Common - aldolase Atu3875 66 COG1830 FbaB, DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes Carbohydrate transport and metabolism 15891690 Common - hypothetical protein Atu3242 19 COG3828 COG3828, Uncharacterized protein conserved in bacteria Function unknown 159186309 Common gabD succinate semialdehyde dehydrogenase Atu4762 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 159185595 Common ampC beta-lactamase Atu3077 110 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 15891542 Common - ABC transporter, substrate binding protein (iron) Atu3391 88 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 15890565 Common gcdH glutaryl-CoA dehydrogenase Atu4418 160 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 15890837 Common - oxidoreductase Atu4138 95 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 159185668 Common - ABC transporter, substrate binding protein (dipeptide) Atu3269 190 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15891126 Common - acyl-CoA hydrolase Atu3826 136 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 159186090 Common phzC phenazine biosynthesis protein Atu4269 116 COG0384 COG0384, Predicted epimerase, PhzC/PhzF homolog General function prediction only 15890759 Common soxD sarcosine oxidase delta subunit Atu4223 36 COG4311 SoxD, Sarcosine oxidase delta subunit Amino acid transport and metabolism 15891064 Common glpR transcriptional regulator, DeoR family Atu3898 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 15891718 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu3214 219 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159186000 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu4032 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 159186215 Common - ABC transporter, substrate binding protein Atu4551 92 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15890094 Pathogen - hypothetical protein Atu4893 1 None None None 159185756 Common - acetyl-CoA C-acetyltransferase Atu3475 184 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 15890252 Common acoR transcriptional regulator Atu4741 177 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 159186067 Pathogen - hypothetical protein Atu4213 1 None None None 15890090 Pathogen - hypothetical protein Atu4897 2 None None None 159186269 Common - two component response regulator Atu4671 36 COG4565 CitB, Response regulator of citrate/malate metabolism Transcription / Signal transduction mechanisms 15890964 Common - transcriptional regulator, LysR family Atu4004 155 COG0583 LysR, Transcriptional regulator Transcription 15890524 Common - hypothetical protein Atu4460 2 COG3905 COG3905, Predicted transcriptional regulator Transcription 15891410 Common uxuB mannitol dehydrogenase Atu3530 88 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 159185678 Common - transcriptional regulator, Lrp family Atu3291 155 COG1522 Lrp, Transcriptional regulators Transcription 159185768 Pathogen - hypothetical protein Atu3497 1 None None None 15890512 Common lysS lysyl-tRNA synthetase Atu4473 248 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 15891696 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu3236 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15891049 Common - biotin carboxylase Atu3913 235 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 159186186 Common - ABC transporter, nucleotide binding/ATPase protein Atu4487 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 159185605 Common - ABC transporter, membrane spanning protein (sugar) Atu3101 153 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15890740 Common - hypothetical protein Atu4242 18 None None None 159186141 Common nnrR transcriptional regulatory, Crp family Atu4380 170 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 15890409 Common - ABC transporter, membrane spanning protein Atu4579 221 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 159186276 Common - GGDEF family protein Atu4692 188 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 15890871 Common cmk cytidylate kinase Atu4103 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 15891437 Common - ABC transporter, nucleotide binding/ATPase protein Atu3501 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 159185876 Common - hypothetical protein Atu3720 30 COG2318 DinB, Uncharacterized protein conserved in bacteria Function unknown 159185913 Pathogen - hypothetical protein Atu3843 1 None None None 159185672 Common - nitrilotriacetate monooxygenase Atu3277 108 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 15891777 Common - transcriptional regulator, AraC family Atu3152 87 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 15890815 Common - two component sensor kinase Atu4163 27 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 15890979 Common copC copper tolerance protein Atu3990 30 COG4454 COG4454, Uncharacterized copper-binding protein Inorganic ion transport and metabolism 15890735 Common attK aldehyde dehydrogenase Atu4247 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 15891880 Pathogen - hypothetical protein Atu3045 1 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 159185617 Common - ABC transporter, substrate binding protein (sugar) Atu3130 43 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15891441 Common - hypothetical protein Atu3496 24 COG3915 COG3915, Uncharacterized protein conserved in bacteria Function unknown 15890936 Pathogen - hypothetical protein Atu8035 1 None None None 159185870 Common mrsA phosphoglucomutase/phosphomannomutase Atu3709 241 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 159185931 Common - ABC transporter, substrate binding protein (sugar) Atu3881 92 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159186132 Common - hypothetical protein Atu4365 3 None None None 159186368 Pathogen - hypothetical protein Atu8093 1 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 159185652 Common - putative malate dehydrogenase Atu3208 67 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 159186033 Common - monooxygenase Atu4121 70 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 15890706 Common - hypothetical protein Atu4275 98 COG2049 DUR1, Allophanate hydrolase subunit 1 Amino acid transport and metabolism 159185788 Common - putative succinoglycan transport protein Atu3550 92 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 15890648 Common impI putative forkhead-type phosphopeptide-binding protein Atu4335 11 COG3456 COG3456, Uncharacterized conserved protein, contains FHA domain Signal transduction mechanisms 15890922 Common exoP exopolysaccharide polymerization/transport protein Atu4049 145 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 15891785 Common - transcriptional regulator, GntR family Atu3144 151 COG2186 FadR, Transcriptional regulators Transcription 15890559 Common - ABC transporter, nucleotide binding/ATPase protein (spermidine/putrescine) Atu4424 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 159185790 Common - hypothetical protein Atu3554 16 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 15890997 Common - hypothetical protein Atu3972 102 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 15891040 Common repB replication protein B Atu3923 118 COG1475 Spo0J, Predicted transcriptional regulators Transcription 159186352 Common - oxidoreductase Atu4865 206 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159185744 Common - ABC transporter, substrate binding protein (oligopeptide) Atu3444 205 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15891846 Common - hypothetical protein Atu3080 43 COG4102 COG4102, Uncharacterized protein conserved in bacteria Function unknown 159186254 Common katA catalase Atu4642 98 COG0376 KatG, Catalase (peroxidase I) Inorganic ion transport and metabolism 15890858 Common dppD ABC transporter, nucleotide binding/ATPase protein (dipeptide) Atu4116 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15890526 Common - hypothetical protein Atu4458 14 COG5488 COG5488, Integral membrane protein Function unknown 15891521 Common - ABC transporter, nucleotide binding/ATPase protein Atu3412 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 15891755 Common - ABC transporter, substrate binding protein (sugar) Atu3174 118 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159185859 Common fecB ABC transporter, membrane spanning protein (iron(III) dicitrate) Atu3688 71 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 15891059 Common nrtC ABC transporter, nucleotide binding/ATPase protein (nitrate) Atu3903 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 159185727 Common - hypothetical protein Atu3406 35 COG3153 COG3153, Predicted acetyltransferase General function prediction only 15890840 Common gcd glucose dehydrogenase Atu4135 60 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 159186262 Common melA alpha-galactosidase Atu4660 54 COG1486 CelF, Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases Carbohydrate transport and metabolism 15890538 Common - ABC transporter, nucleotide binding/ATPase protein Atu4445 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 15890651 Common impL IcmF family protein Atu4332 46 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 159185877 Common - hypothetical protein Atu3721 9 None None None 15890304 Common - ABC transporter, membrane spanning protein (amino acid) Atu4689 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 159186078 Common dhaS aldehyde dehydrogenase Atu4241 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 15890684 Common - hypothetical protein Atu4298 141 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 15890474 Common iolD acetolactate synthase Atu4511 221 COG3962 COG3962, Acetolactate synthase Amino acid transport and metabolism 15891247 Common - hypothetical protein Atu3699 29 COG3760 COG3760, Uncharacterized conserved protein Function unknown 15890851 Common - ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid) Atu4124 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 15891624 Common - phosphomannose isomerase Atu3311 25 COG2942 COG2942, N-acyl-D-glucosamine 2-epimerase Carbohydrate transport and metabolism 159186205 Common aroQ 3-dehydroquinate dehydratase Atu4531 170 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 159185629 Common mmsB 3-hydroxyisobutyrate dehydrogenase Atu3159 188 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 15891379 Pathogen - hypothetical protein Atu3562 1 None None None 159186098 Common - transcriptional regulator, LysR family Atu4288 130 COG0583 LysR, Transcriptional regulator Transcription 15890413 Common - transcriptional regulator, AraC family Atu4575 112 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 15890619 Common thuR transcriptional regulator, LacI family Atu4364 126 COG1609 PurR, Transcriptional regulators Transcription 15890611 Common rbsC ABC transporter, membrane spanning protein (ribose) Atu4372 138 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 159186314 Pathogen - hypothetical protein Atu4779 1 None None None 15891094 Common - hypothetical protein Atu3868 6 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 15890626 Common - hypothetical protein Atu4357 25 COG3672 COG3672, Predicted periplasmic protein Function unknown 159186101 Common - monooxygenase Atu4293 63 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 17936929 Pathogen - hypothetical protein Atu3218 1 None None None 159185819 Common plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase Atu3609 153 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 15890124 Common - hypothetical protein Atu4866 9 None None None 159186032 Common - proline dipeptidase Atu4112 245 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 159185568 Pathogen - hypothetical protein Atu3019 1 None None None 159185737 Common - putative sulfonate monooxygenase Atu3426 80 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 15890464 Common - hypothetical protein Atu4522 8 None None None 159185616 Common yteR probable di-trans,poly-cis-decaprenylcistransferase Atu3128 14 COG4225 COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins General function prediction only 17937381 Pathogen - hypothetical protein Atu3674 1 None None None 15890262 Common - hypothetical protein Atu4730 27 COG5430 COG5430, Uncharacterized secreted protein Function unknown 15891917 Common exoZ exopolysaccharide production protein Atu3009 111 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 15891860 Common - resiniferatoxin-binding, phosphotriesterase-related protein Atu3066 35 COG1735 Php, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 159186168 Common - hypothetical protein Atu4443 29 COG4321 COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis General function prediction only 159186298 Common - methyl-accepting chemotaxis protein Atu4736 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 159185608 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu3111 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 159185901 Common - transcriptional regulator, TetR family Atu3798 160 COG1309 AcrR, Transcriptional regulator Transcription 15890677 Common - two component sensor kinase Atu4305 220 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 15890476 Common iolB hypothetical protein Atu4509 53 COG3718 IolB, Uncharacterized enzyme involved in inositol metabolism Carbohydrate transport and metabolism 15891824 Common - ABC transporter, substrate binding protein (sugar) Atu3102 92 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159185636 Common - ABC transporter, membrane spanning protein (sugar) Atu3173 180 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 159185977 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu3970 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15891808 Common - hypothetical protein Atu3118 28 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 15890758 Common soxB sarcosine oxidase beta subunit Atu4224 129 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 15890978 Common copA multicopper oxidase Atu3991 128 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 15890426 Common - polygalacturonase Atu4560 20 COG5434 PGU1, Endopygalactorunase Cell envelope biogenesis, outer membrane 15891421 Common argJ bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein Atu3518 167 COG1364 ArgJ, N-acetylglutamate synthase (N-acetylornithine aminotransferase) Amino acid transport and metabolism 15890419 Common - ABC transporter, nucleotide binding/ATPase protein Atu4569 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15890872 Common - hypothetical protein Atu8037 16 COG4530 COG4530, Uncharacterized protein conserved in bacteria Function unknown 15891186 Common - sigma 54 dependent transcriptional activator Atu3764 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 159186018 Common - hypothetical protein Atu4067 3 None None None 15891147 Common hutH Histidine ammonia-lyase Atu3803 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 15891728 Common - RND multidrug efflux transporter Atu3202 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 15890767 Common ftsZ cell division protein Atu4215 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 159185982 Common - hydrolase Atu3980 68 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 159185761 Common - enoyl-CoA hydratase Atu3481 180 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 159186355 Pathogen - hypothetical protein Atu4881 1 None None None 15891526 Common - hypothetical protein Atu3407 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 159185970 Common - oxidoreductase Atu3958 82 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 159185754 Common bkdA1 2-oxoisovalerate dehydrogenase alpha subunit Atu3473 153 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 159186121 Common impK OmpA-like porin Atu4333 136 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 159186240 Common - IS426 transposase Atu4602 42 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 159185887 Common purK phosphoribosylaminoimidazole carboxylase ATPase subunit Atu3755 193 COG0026 PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) Nucleotide transport and metabolism 15891368 Common - transcriptional regulator, HTH family Atu3572 40 COG1396 HipB, Predicted transcriptional regulators Transcription 159185849 Common ephA epoxide hydrolase Atu3664 148 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 15890485 Common setA MFS permease Atu4500 20 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 15890206 Common afuC ABC transporter, nucleotide binding/ATPase protein (iron) Atu4786 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 15891838 Common - ABC transporter, substrate binding protein (spermidine/putrescine) Atu3088 25 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 15891539 Common fecE ABC transporter, nucleotide binding/ATPase protein (iron) Atu3394 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 15891669 Common - transcriptional regulator, IclR family Atu3264 97 COG1414 IclR, Transcriptional regulator Transcription 15891372 Pathogen - hypothetical protein Atu3569 1 None None None 15890806 Pathogen - hypothetical protein Atu8038 1 None None None 15890786 Common - hypothetical protein Atu4196 110 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 17938319 Common - hypothetical protein Atu4630 2 None None None 15890402 Common - choloylglycine hydrolase family protein Atu4586 54 COG3049 COG3049, Penicillin V acylase and related amidases Cell envelope biogenesis, outer membrane 15891695 Common - ABC transporter, membrane spanning protein (sugar) Atu3237 147 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 159185963 Pathogen - hypothetical protein Atu3940 1 None None None 159185853 Common - putative siderophore biosynthesis protein Atu3678 30 COG3251 COG3251, Uncharacterized protein conserved in bacteria Function unknown 15890394 Common - hypothetical protein Atu4594 9 None None None 159186360 Common - acetyltransferase Atu4896 50 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 159186281 Common - ABC transporter, nucleotide binding/ATPase protein (oligopeptide) Atu4700 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 159186057 Common - calcium-binding protein, regucalcin Atu4190 79 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 15890610 Common cytR transcriptional repressor, LacI family Atu4373 128 COG1609 PurR, Transcriptional regulators Transcription 159185596 Common chrA chromate transport protein Atu3079 100 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 159186290 Common dppB ABC transporter, membrane spanning protein (dipeptide) Atu4720 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159186056 Common dapA dihydropicolinate synthase Atu4189 211 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 159185734 Common - hypothetical protein Atu3421 112 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 159186147 Common norE nitric oxide reductase NorE protein Atu4391 21 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 159186340 Common cga glucoamylase Atu4833 26 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 159185922 Common exsE ABC transporter, nucleotide binding/ATPase protein Atu3863 73 COG4178 COG4178, ABC-type uncharacterized transport system, permease and ATPase components General function prediction only 159185835 Common dacF penicillin-binding protein dacf precursor Atu3634 154 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 159185896 Common - hypothetical protein Atu3780 28 COG2845 COG2845, Uncharacterized protein conserved in bacteria Function unknown 159185698 Common - hypothetical protein Atu3334 2 None None None 15891560 Common - ABC transporter, substrate binding protein (sugar) Atu3372 111 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159186288 Common - two component sensor kinase Atu4711 214 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 15891235 Common palA omp16 protein Atu3713 143 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 159186227 Common - inositol monophosphatase family protein Atu4573 191 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 159186335 Common lrp transcriptional regulator, AsnC family Atu4818 170 COG1522 Lrp, Transcriptional regulators Transcription 159185655 Common - ABC transporter, membrane spanning protein (sugar) Atu3238 146 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15890381 Common nodX sugar acetylase Atu4607 28 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 15891761 Common - ABC transporter, membrane spanning protein (sorbitol/mannitol) Atu3168 144 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15890113 Common - short-chain dehydrogenase Atu4877 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159186104 Common - hypothetical protein Atu4299 161 COG1959 COG1959, Predicted transcriptional regulator Transcription 15890666 Common - ABC transporter, membrane spanning protein Atu4316 26 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15891472 Common - metallo-beta-lactamase superfamily protein Atu3465 196 COG3453 COG3453, Uncharacterized protein conserved in bacteria Function unknown 159185641 Common ugpA ABC transporter, membrane spanning protein (glycerol-3-phosphate) Atu3186 147 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15891509 Common - hypothetical protein Atu3425 126 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 159185984 Common - hypothetical protein Atu3986 5 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 15891543 Common - ABC transporter, substrate binding protein (iron) Atu3390 72 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 15890454 Common aroE shikimate 5-dehydrogenase Atu4532 203 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 159186344 Common - hypothetical protein Atu4846 17 None None None 15890158 Common - 6-phosphogluconate dehydrogenase-like protein Atu4834 184 COG1023 Gnd, Predicted 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 15890356 Common - hypothetical protein Atu4634 67 COG1392 COG1392, Phosphate transport regulator (distant homolog of PhoU) Inorganic ion transport and metabolism 15891393 Common - glycosyltransferase Atu3548 43 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15890867 Pathogen - hypothetical protein Atu8196 1 None None None 15890215 Common cpo non-heme chloroperoxidase Atu4778 137 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 15890313 Common - ABC transporter, membrane spanning protein (amino acid) Atu4680 171 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 15891291 Common - hypothetical protein Atu3651 68 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 17938521 Pathogen - hypothetical protein Atu4832 1 None None None 159186024 Common idnO gluconate 5-dehydrogenase Atu4086 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15890496 Common - outer membrane lipoprotein Atu4489 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 159185804 Common glpD glycerol-3-phosphate dehydrogenase Atu3578 150 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 159186013 Common exoU succinoglycan biosynthesis glycosyltransferase Atu4060 16 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15891336 Common hpt hypoxanthine phosphoribosyltransferase Atu3604 152 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 159186009 Common exoK endo-1,3-1,4-beta-glycanase Atu4055 20 COG2273 SKN1, Beta-glucanase/Beta-glucan synthetase Carbohydrate transport and metabolism 159186133 Common sdhX short chain dehydrogenase Atu4366 224 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15891628 Common celC endoglucanase Atu3307 30 COG3405 CelA, Endoglucanase Y Carbohydrate transport and metabolism 159186016 Common - O-linked GlcNAc transferase Atu4063 136 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 159186106 Common - hypothetical protein Atu4301 34 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 15890895 Common glgB glycogen branching enzyme Atu4077 144 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 159186083 Common atsA hypothetical protein Atu4255 111 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 15890986 Common - hypothetical protein Atu8194 17 COG2259 COG2259, Predicted membrane protein Function unknown 15891888 Common - ABC transporter, membrane spanning protein (dipeptide) Atu3037 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159186299 Common - flavin-containing monooxygenase Atu4739 71 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 159185699 Common - 3-methyladenine DNA glycosylase Atu3335 82 COG2094 Mpg, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 159185647 Common acrR transcriptional regulator, TetR family Atu3201 112 COG1309 AcrR, Transcriptional regulator Transcription 15891279 Pathogen - hypothetical protein Atu8034 1 None None None 159186142 Common nirV nitrite reductase, NirV precursor Atu4381 52 COG1262 COG1262, Uncharacterized conserved protein Function unknown 159185942 Common ntrA ABC transporter, substrate binding protein (nitrate) Atu3905 91 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 15890943 Common - cytochrome c2 Atu4027 55 COG3474 COG3474, Cytochrome c2 Energy production and conversion 159185657 Common - dehydrogenase Atu3241 132 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 159186291 Common dppC ABC transporter, membrane spanning protein (dipeptide) Atu4721 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15890271 Common ggt gamma-glutamyltranspeptidase Atu4722 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 15890585 Common - protease Atu4397 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 159185731 Common - ABC transporter, nucleotide binding/ATPase protein Atu3417 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 159185862 Common pbpC penicillin binding protein Atu3694 200 COG4953 PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC Cell envelope biogenesis, outer membrane 15890274 Common dppA ABC transporter, substrate binding protein (dipeptide) Atu4719 203 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15891471 Common - transcriptional regulator, ArsR family Atu3466 159 COG0640 ArsR, Predicted transcriptional regulators Transcription 15891633 Common - aminotransferase Atu3300 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 159186149 Common - hypothetical protein Atu4395 77 COG3189 COG3189, Uncharacterized conserved protein Function unknown 15891719 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu3213 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15891139 Common - hydrolase Atu3811 81 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 159186364 Common - protein YBGT-related protein Atu8036 10 COG4890 COG4890, Predicted outer membrane lipoprotein Function unknown 159185585 Common - hypothetical protein Atu3054 22 COG5368 COG5368, Uncharacterized protein conserved in bacteria Function unknown 15891489 Common - hypothetical protein Atu3447 86 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 15890484 Common - hypothetical protein Atu4501 38 COG2319 COG2319, FOG: WD40 repeat General function prediction only 15890809 Common nspC carboxynorspermidine decarboxylase Atu4169 60 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 15891329 Common - hypothetical protein Atu8095 12 COG4093 COG4093, Uncharacterized protein conserved in bacteria Function unknown 17938587 Pathogen - hypothetical protein Atu4898 1 None None None 159186004 Common - ABC transporter, nucleotide binding/ATPase protein (glycine betaine) Atu4044 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 15891398 Common dhbK 3,4-dihydroxy-2-butanone kinase Atu3543 77 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 159185924 Common - hypothetical protein Atu3867 82 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 159185921 Common - acyl-CoA hydrolase Atu3861 133 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 159186347 Common - citrate synthase-like protein Atu4851 191 COG0372 GltA, Citrate synthase Energy production and conversion 159185971 Common dhaL aldehyde dehydrogenase Atu3959 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 15890763 Common - cation efflux system protein Atu4219 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 159185881 Common - potassium/proton antiporter Atu3738 113 COG3263 COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain Inorganic ion transport and metabolism 159186150 Common - hypothetical protein Atu4398 47 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 15890790 Common - ABC transporter, substrate binding protein (oligopeptide) Atu4192 171 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 159186027 Common cydA cytochrome d oxidase Atu4091 166 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 159186128 Pathogen - hypothetical protein Atu4349 1 None None None 159185801 Common - hypothetical protein Atu3570 27 COG1944 COG1944, Uncharacterized conserved protein Function unknown 159186273 Common - hypothetical protein Atu4686 7 None None None 15891811 Common - transcriptional regulator, TetR family Atu3115 107 COG1309 AcrR, Transcriptional regulator Transcription 15891782 Common - oxidoreductase Atu3147 205 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 15891495 Common - transcriptional regulator, LysR family Atu3440 138 COG0583 LysR, Transcriptional regulator Transcription 15890387 Common - IS426 transposase Atu4601 107 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 15891340 Pathogen - hypothetical protein Atu3600 1 None None None 15891657 Common - hypothetical protein Atu3276 116 COG4625 COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain Function unknown 15890404 Common - transcriptional regulator, TetR family Atu4584 5 COG1309 AcrR, Transcriptional regulator Transcription 15890506 Common emrB MFS permease Atu4479 197 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15890116 Common - hypothetical protein Atu4874 10 None None None 15890266 Common - hypothetical protein Atu4727 69 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 15891312 Common - hypothetical protein Atu3628 8 None None None 159185682 Common - hypothetical protein Atu3299 44 COG2510 COG2510, Predicted membrane protein Function unknown 159185888 Common - hypothetical protein Atu3759 38 COG3492 COG3492, Uncharacterized protein conserved in bacteria Function unknown 159185897 Common - two component response regulator Atu3781 218 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 15890217 Common fdhF formate dehydrogenase alpha subunit Atu4776 174 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 15891739 Common - hypothetical protein Atu3190 13 None None None 159186111 Common purU formyltetrahydrofolate deformylase Atu4315 218 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 159185576 Common - ABC transporter, membrane spanning protein (dipeptide) Atu3036 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159186351 Common - hypothetical protein Atu4860 10 COG1708 COG1708, Predicted nucleotidyltransferases General function prediction only 15891140 Common - transcriptional regulator, LysR family Atu3810 134 COG0583 LysR, Transcriptional regulator Transcription 159185839 Common vgrG vgrG protein Atu3642 56 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 15890728 Common - transcriptional regulator, LacI family Atu4254 123 COG1609 PurR, Transcriptional regulators Transcription 15890581 Common - hypothetical protein Atu4401 26 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 159186011 Common exoT succinoglycan biosynthesis transport protein Atu4057 87 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 159186285 Common nuoE formate dehydrogenase subunit gamma Atu4706 157 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 15891110 Pathogen - hypothetical protein Atu3844 1 None None None 15890346 Common - transcriptional regulator, AraC family Atu4644 106 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 159185572 Common gudD glucarate dehydratase Atu3029 97 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 159185832 Common aroK shikimate kinase Atu3626 200 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 159185626 Common - transcriptional regulator, AraC family Atu3153 68 COG2169 Ada, Adenosine deaminase Nucleotide transport and metabolism 15891337 Common - two component response regulator Atu3603 215 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 159185911 Pathogen - hypothetical protein Atu3836 1 None None None 15890246 Common - ABC transporter, membrane spanning protein (sugar) Atu4747 113 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 15890121 Common - hypothetical protein Atu4869 30 None None None 15891515 Common - acetyltransferase Atu3418 29 COG3393 COG3393, Predicted acetyltransferase General function prediction only 159186076 Common - ABC transporter, nucleotide binding/ATPase protein (amino acid) Atu4235 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 159185962 Common - transcriptional regulator, GntR family Atu3936 116 COG2188 PhnF, Transcriptional regulators Transcription 15891589 Common exsD radical activating protein Atu3344 127 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 15890534 Common - ABC transporter, membrane spanning protein (sorbitol/mannitol) Atu4449 168 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15891826 Common - ABC transporter, membrane spanning protein (sugar) Atu3100 150 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15891710 Common - ABC transporter, substrate binding protein (ribose) Atu3222 116 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15891403 Common - hypothetical protein Atu3538 42 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 159186357 Pathogen - hypothetical protein Atu4887 1 None None None 159186301 Common - hypothetical protein Atu4742 10 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 15890627 Common - hypothetical protein Atu4356 6 None None None 15891912 Common - hypothetical protein Atu3014 14 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 159185738 Common - desulfurizing enzyme Atu3432 15 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 159185878 Common - methyl-accepting chemotaxis protein Atu3725 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 15890352 Common - two component response regulator Atu4638 208 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 15891768 Common - hypothetical protein Atu3161 36 COG4091 COG4091, Predicted homoserine dehydrogenase Amino acid transport and metabolism 15891148 Common proV ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine) Atu3802 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 159185834 Common - hypothetical protein Atu3633 126 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 15891212 Common gapA Glyceraldehyde 3-Phosphate Dehydrogenase Atu3737 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 159186338 Common - ABC transporter, membrane spanning protein Atu4827 126 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 159186103 Common - transcriptional regulator, AraC family Atu4297 145 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 159185808 Common - propionyl-CoA carboxylase Atu3586 216 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 159185814 Common etfA electron transfer flavoprotein alpha subunit Atu3596 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 15890866 Common rnd ribonuclease D Atu4108 108 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 15890439 Common pcaI 3-oxoadipate CoA-transferase subunit A Atu4547 102 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 15891430 Common ubiG 3-demethylubiquinone-9 3-methyltransferase Atu3508 165 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 159186052 Common lysC aspartate kinase Atu4172 234 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 15890715 Common - hypothetical protein Atu4267 67 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 159186313 Common - hypothetical protein Atu4777 134 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 15891554 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu3378 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15891623 Common - hypothetical protein Atu3312 18 COG4124 ManB, Beta-mannanase Carbohydrate transport and metabolism 15890155 Common - hypothetical protein Atu4837 6 None None None 15891720 Common - ABC transporter, substrate binding protein (oligopeptide) Atu3212 205 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15890288 Common - transcriptional regulator, LysR family Atu4705 187 COG0583 LysR, Transcriptional regulator Transcription 159185717 Common - transcriptional regulator, LysR family Atu3381 175 COG0583 LysR, Transcriptional regulator Transcription 15891915 Common - transcriptional regulator, ArsR family Atu3011 63 COG0640 ArsR, Predicted transcriptional regulators Transcription 15890170 Common - hypothetical protein Atu4820 8 None None None 15890850 Common - ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid) Atu4125 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 159186114 Common rbsA ABC transporter, nucleotide binding/ATPase protein (ribose) Atu4321 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 15890954 Common - hypothetical protein Atu4015 8 None None None 15890991 Common - transcriptional regulator, LysR family Atu3978 174 COG0583 LysR, Transcriptional regulator Transcription 15891091 Common lldA L-lactate dehydrogenase Atu3871 113 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 15890647 Common impH hypothetical protein Atu4336 44 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 159186214 Common - transcriptional regulator, LacI family Atu4550 77 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15891086 Common glpD glycerol-3-phosphate dehydrogenase Atu3876 149 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 15890522 Common - transcriptional regulator Atu4462 61 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 15890859 Common dppC ABC transporter, membrane spanning protein (dipeptide) Atu4115 218 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15891841 Common - hydantoin Racemase Atu3085 42 COG4126 COG4126, Hydantoin racemase Amino acid transport and metabolism 15891213 Common tktA transketolase Atu3736 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 159186138 Common - hypothetical protein Atu4376 36 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 15891412 Common - oxidoreductase Atu3528 176 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 15891448 Common - ABC transporter, membrane spanning protein Atu3489 119 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 159185841 Common - hypothetical protein Atu3648 3 COG3575 COG3575, Uncharacterized protein conserved in bacteria Function unknown 15891643 Common thiD phosphomethylpyrimidine kinase Atu3290 218 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 15891788 Common kduD 2-deoxy-D-gluconate 3-dehydrogenase Atu3141 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15890822 Common - ABC transporter, membrane spanning protein (aliphatic sulphonate) Atu4155 191 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 15890542 Common gatA amidase Atu4441 220 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 159186094 Common aatA aspartate aminotransferase Atu4278 237 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 159186339 Common - hypothetical protein Atu4831 26 None None None 15891754 Common mdeA hypothetical protein Atu3175 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 15890549 Common - ABC transporter, nucleotide binding/ATPase protein (oligopeptide) Atu4434 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15891332 Common - hypothetical protein Atu3608 32 COG1434 COG1434, Uncharacterized conserved protein Function unknown 15890367 Common dppB ABC transporter, membrane spanning protein (dipeptide) Atu4623 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15890813 Common - hypothetical protein Atu4165 3 COG1873 COG1873, Uncharacterized conserved protein Function unknown 15890697 Common - ABC transporter, substrate binding protein (amino acid) Atu4284 178 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 159186354 Common - transcriptional regulator, AraC family Atu4880 119 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 15891133 Common - dehydratase Atu3817 73 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 159186261 Common - hypothetical protein Atu4658 5 None None None 159185688 Common galE UDP-glucose 4-epimerase Atu3315 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 15891246 Common - glutathione S-transferase Atu3701 83 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 159185777 Common - methyltransferase Atu3513 79 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 159186371 Pathogen - hypothetical protein Atu8114 1 None None None 15890649 Common impJ hypothetical protein Atu4334 49 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 15891582 Common - ABC transporter, membrane spanning protein (sugar) Atu3351 153 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 159185919 Common - hypothetical protein Atu3854 18 COG3598 RepA, RecA-family ATPase DNA replication, recombination, and repair 159186077 Common - hydrolase Atu4238 103 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 159186268 Common - hypothetical protein Atu4669 2 None None None 15890238 Common - ABC transporter, substrate binding protein (amino acid) Atu4755 116 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 159185793 Common - hypothetical protein Atu3557 3 None None None 15890920 Common exoO succinoglycan biosynthesis glycosyltransferase Atu4051 195 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15890937 Common - ABC transporter, substrate binding protein (sugar) Atu4033 48 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15891699 Common - hypothetical protein Atu8185 5 None None None 159185671 Common - HlyD family secretion protein Atu3273 168 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 15891356 Common - hypothetical protein Atu8189 7 None None None 159185567 Common - hypothetical protein Atu3018 12 COG5485 COG5485, Predicted ester cyclase General function prediction only 15890770 Common ugpQ glycerophosphodiester phosphodiesterase Atu4212 119 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 15890917 Common exoL succinoglycan biosynthesis protein Atu4054 8 None None None 15891565 Common - TRAP dicarboxylate transporter, DctM subunit Atu3367 127 COG4664 FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large permease component Secondary metabolites biosynthesis, transport, and catabolism 159185854 Common - putative siderophore biosynthesis protein Atu3680 3 None None None 15890331 Common agpT transcriptional regulator, AraC family Atu4659 99 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 159185676 Common - thiamine biosynthesis associated protein Atu3287 93 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 15891339 Common lysA diaminopimelate decarboxylase Atu3601 217 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 159186278 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu4696 220 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15890328 Common - ABC transporter, membrane spanning protein (oligopeptide ) Atu4662 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159185949 Common bfrA exogenous ferric siderophore receptor Atu3916 127 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 159186157 Common - transcriptional regulator, LacI family Atu4420 126 COG1609 PurR, Transcriptional regulators Transcription 15890835 Common - hypothetical protein Atu4140 9 COG4711 COG4711, Predicted membrane protein Function unknown 15890606 Common - oxidoreductase Atu4377 74 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 159186182 Common xylA xylose isomerase Atu4483 69 COG2115 XylA, Xylose isomerase Carbohydrate transport and metabolism 15890845 Common acsA acetyl-CoA synthetase Atu4130 204 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 159186346 Common - NADP-dependent aldehyde dehydrogenase Atu4849 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 159186320 Common gmd GDP-mannose 4,6-dehydratase Atu4789 218 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 159185871 Common ftsH metalloprotease Atu3710 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 159185956 Common - hypothetical protein Atu3928 32 COG5476 COG5476, Uncharacterized conserved protein Function unknown 159185600 Pathogen - hypothetical protein Atu3091 1 None None None 159186171 Common mtlK mannitol 2-dehydrogenase Atu4451 90 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 15890903 Common soxA sarcosine oxidase alpha subunit Atu4069 181 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 159185581 Common - ABC transporter, substrate binding protein (oligopeptide) Atu3049 210 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15891848 Common ampR transcriptional regulator, LysR family Atu3078 175 COG0583 LysR, Transcriptional regulator Transcription 15891493 Common - ABC transporter, substrate binding protein (oligopeptide) Atu3442 217 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15891596 Common thuR transcriptional regulator, LacI family Atu3337 126 COG1609 PurR, Transcriptional regulators Transcription 159185869 Common - outer surface protein Atu3708 28 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 159186044 Common - hypothetical protein Atu4150 74 COG2962 RarD, Predicted permeases General function prediction only 15890789 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu4193 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159185898 Common gltB glutamate synthase large subunit Atu3784 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 17938366 Pathogen - hypothetical protein Atu4677 1 None None None 159185890 Common pepF oligoendopeptidase F Atu3765 88 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 159186226 Common - hypothetical protein Atu4572 133 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 15890139 Pathogen - hypothetical protein Atu4852 1 None None None 15891859 Common - hypothetical protein Atu3067 10 COG5426 COG5426, Uncharacterized membrane protein Function unknown 15890708 Common accC acetyl-CoA carboxylase, biotin carboxylase Atu4273 224 COG0439 AccC, Biotin carboxylase Lipid metabolism 15891687 Common - ABC transporter, substrate binding protein (amino acid) Atu3245 164 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 15891360 Common mutA methylmalonyl-CoA mutase Atu3580 109 COG1884 Sbm, Methylmalonyl-CoA mutase, N-terminal domain/subunit Lipid metabolism 15891570 Common - sensory methylation accepting chemotaxis protein Atu3363 167 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 159186003 Common gcd glucose dehydrogenase Atu4037 119 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 159185935 Common glpK glycerol kinase Atu3890 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 15890403 Common - hypothetical protein Atu4585 68 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 15890374 Common rfbD dTDP-4-dehydrorhamnose reductase Atu4616 168 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 159186175 Common sitC ABC transporter, membrane spanning protein (iron) Atu4469 192 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 15891177 Common - hypothetical protein Atu3773 43 COG1585 COG1585, Membrane protein implicated in regulation of membrane protease activity Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 15891367 Pathogen - hypothetical protein Atu3573 1 None None None 15891286 Common - hypothetical protein Atu3657 8 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 159186190 Common kdgA keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase Atu4494 126 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 15890688 Common yafB oxidoreductase Atu4294 198 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 15890948 Common fhuA hydroxamate-type ferrisiderophore receptor Atu4022 123 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 159186092 Common - hypothetical protein Atu4274 4 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 15890314 Common - ABC transporter, membrane spanning protein (amino acid) Atu4679 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 159185995 Common - transcriptional regulator, LysR family Atu4021 189 COG0583 LysR, Transcriptional regulator Transcription 15890912 Common exoV succinoglycan biosynthesis protein Atu4059 12 COG2327 WcaK, Uncharacterized conserved protein Function unknown 15891272 Common - polyketide synthase, siderophore biosynthesis protein Atu3672 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 15890632 Common - hypothetical protein Atu4351 3 COG5620 COG5620, Uncharacterized conserved protein Function unknown 15890447 Common pcaG protocatechuate 3,4-dioxygenase alpha chain Atu4539 39 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 159185798 Common - hypothetical protein Atu3565 12 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 15891224 Common ruvC Holliday junction resolvase Atu3724 197 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 15891488 Common - putative dibenzothiophene desulfurization enzyme B Atu3448 23 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 159185764 Common - short chain dehydrogenase Atu3485 235 COG3347 COG3347, Uncharacterized conserved protein Function unknown 15891299 Common - hypothetical protein Atu3641 23 COG5351 COG5351, Uncharacterized protein conserved in bacteria Function unknown 159185692 Common - ABC transporter, nucleotide binding/ATPase protein Atu3322 249 COG4618 ArpD, ABC-type protease/lipase transport system, ATPase and permease components General function prediction only 15891703 Common - hypothetical protein Atu3229 69 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 159186376 Common - hypothetical protein Atu8195 3 None None None 15891300 Common - hypothetical protein Atu3640 15 None None None 159185607 Common - transcriptional regulator, LacI family Atu3107 125 COG1609 PurR, Transcriptional regulators Transcription 159185703 Common - hypothetical protein Atu3348 33 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 159186184 Common bgl beta-glucosidase Atu4485 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 15891155 Common - AcrB/AcrD/AcrF family protein Atu3795 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 15891169 Common - two component sensor kinase Atu3782 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 159185663 Common - ABC transporter, membrane spanning protein Atu3261 119 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 15890459 Pathogen - hypothetical protein Atu8041 1 None None None 15890944 Common - hypothetical protein Atu4026 11 None None None 159185989 Common - hypothetical protein Atu4003 15 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 159186151 Common - ABC transporter, nucleotide binding/ATPase protein (anion) Atu4403 249 COG4525 TauB, ABC-type taurine transport system, ATPase component Inorganic ion transport and metabolism 15890123 Common - hypothetical protein Atu4867 13 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 159185807 Common - putative glutathione S-transferase YghU Atu3585 96 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 15891348 Common - hypothetical protein Atu8190 13 None None None 15890131 Common - hypothetical protein Atu4859 15 COG5397 COG5397, Uncharacterized conserved protein Function unknown 159185923 Common - hypothetical protein Atu3865 87 COG4196 COG4196, Uncharacterized protein conserved in bacteria Function unknown 17937527 Pathogen - hypothetical protein Atu3822 1 None None None 15891817 Common - 2-hydroxyacid-family dehydrogenase Atu3109 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 159185933 Common - inositol monophosphatase family protein Atu3885 185 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 15890414 Common - dehydrogenase Atu4574 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 159186026 Common cydD ABC transporter, nucleotide binding/ATPase protein Atu4089 249 COG4988 CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 159186255 Pathogen - hypothetical protein Atu4643 1 None None None 15890784 Common - hypothetical protein Atu4198 4 COG1609 PurR, Transcriptional regulators Transcription 159185575 Common - two component response regulator Atu3035 109 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 159185993 Common - two component sensor kinase Atu4018 216 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 15890302 Common - 2-hydroxyacid dehydrogenase Atu4691 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 159185752 Pathogen - hypothetical protein Atu3470 1 None None None 15891857 Common - hypothetical protein Atu3069 40 COG0434 SgcQ, Predicted TIM-barrel enzyme General function prediction only 15891781 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu3148 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 159185880 Common - hypothetical protein Atu3729 22 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 15890781 Common - flavodoxin, WrbA-like protein Atu4201 97 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 159185683 Common fixR short-chain alcohol dehydrogenase Atu3301 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159186194 Common - transcriptional regulator, MarR family Atu4504 118 COG1846 MarR, Transcriptional regulators Transcription 159186065 Common - ABC transporter, membrane spanning protein (sugar) Atu4209 140 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 159186272 Common - transcriptional regulator, LacI family Atu4685 125 COG1609 PurR, Transcriptional regulators Transcription 15890507 Common emrA multidrug resistance efflux pump Atu4478 161 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 15891001 Common - ABC transporter, membrane spanning protein (sugar) Atu3968 145 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 17937545 Common - hypothetical protein Atu3840 2 None None None 15890646 Common impG hypothetical protein Atu4337 48 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 159186110 Common - transcriptional regulator, AraC family Atu4309 95 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 15891454 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase Atu3483 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 159185742 Common acd acyl-CoA dehydrogenase Atu3439 97 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 159186107 Common - two component response regulator Atu4306 209 COG4566 TtrR, Response regulator Signal transduction mechanisms 15890279 Common - hypothetical protein Atu4714 11 None None None 17937624 Pathogen - hypothetical protein Atu3921 1 None None None 159185844 Pathogen - hypothetical protein Atu3654 1 None None None 15890700 Common - ABC transporter, membrane spanning protein (amino acid) Atu4281 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 15890311 Common dadA D-amino acid dehydrogenase, small subunit Atu4682 111 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 15891138 Common - hypothetical protein Atu3812 26 COG5478 COG5478, Predicted small integral membrane protein Function unknown 15890580 Common - ABC transporter, membrane spanning protein (anion) Atu4402 126 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 159186207 Common - ABC transporter, substrate binding protein (amino acid) Atu4535 163 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 15890101 Pathogen - hypothetical protein Atu8202 2 None None None 17937734 Pathogen - hypothetical protein Atu4038 1 None None None 15890333 Common - hypothetical protein Atu4657 101 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 15891477 Common - transcriptional regulator, GntR family Atu3461 143 COG2186 FadR, Transcriptional regulators Transcription 159186148 Common - hypothetical protein Atu4394 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 15890664 Common - xylitol dehydrogenase Atu4318 206 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 159186127 Pathogen - hypothetical protein Atu4347 3 None None None 159186075 Common - ABC transporter, membrane spanning protein (amino acid) Atu4234 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 159186292 Common - ABC transporter, nucleotide binding/ATPase protein Atu4723 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 15890894 Common glgP glycogen phosphorylase Atu4078 142 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 159186058 Common - transcriptional regulator, GntR family Atu4191 118 COG2186 FadR, Transcriptional regulators Transcription 159186300 Common - zinc-binding dehydrogenase Atu4740 206 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 159186120 Common impM serine/threonine phosphoprotein phosphatase Atu4331 90 COG3913 SciT, Uncharacterized protein conserved in bacteria Function unknown 159185969 Common - ABC transporter, substrate binding protein (glycine-betaine) Atu3957 78 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 15891038 Common - hypothetical protein Atu3925 31 COG4529 COG4529, Uncharacterized protein conserved in bacteria Function unknown 15891016 Common - hypothetical protein Atu3953 47 COG3938 COG3938, Proline racemase Amino acid transport and metabolism 159186365 Pathogen - hypothetical protein Atu8039 2 None None None 159185766 Common - ABC transporter, nucleotide binding/ATPase protein Atu3488 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 15891297 Pathogen - hypothetical protein Atu3643 2 None None None 15891711 Pathogen - hypothetical protein Atu3221 1 None None None 15890658 Common - ribitol kinase Atu4324 166 COG1069 AraB, Ribulose kinase Energy production and conversion 159186333 Pathogen bme3 hypothetical protein Atu4813 3 None None None 17937244 Pathogen - hypothetical protein Atu3537 1 None None None 15890156 Common - hypothetical protein Atu4836 22 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 159186304 Common - D-tagatose 3-epimerase Atu4748 44 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 159185718 Common prsE2 secretion protein, HlyD family Atu3382 129 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 15891740 Common - hypothetical protein Atu3189 8 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 15890865 Common - hypothetical protein Atu4109 19 COG3613 COG3613, Nucleoside 2-deoxyribosyltransferase Nucleotide transport and metabolism 15890628 Common - hypothetical protein Atu4355 217 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 15890752 Common glnA glutamine synthetase III Atu4230 223 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 15891390 Common - glycosyltransferase Atu3551 136 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15890395 Common hpaG 2-hydroxyhepta-2,4-diene-1, 7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioate decarboxylase Atu4593 180 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 159186312 Pathogen - hypothetical protein Atu4772 1 None None None 159186245 Common dppD ABC transporter, nucleotide binding/ATPase protein (dipeptide) Atu4621 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15891283 Common - hypothetical protein Atu3662 3 None None None 159185811 Common - short chain dehydrogenase Atu3591 235 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 15891721 Common - putative ftsk cell division protein Atu3210 198 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 15890388 Common - ABC transporter, nucleotide binding/ATPase protein Atu4600 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 159186117 Common - proline/glycine betaine transporter Atu4326 136 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15890176 Common bme7 glycosyltransferase Atu4816 158 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 159185739 Common - ABC transporter, substrate binding protein (oligopeptide) Atu3433 206 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15890716 Common - transcriptional regulator, GntR family Atu4266 160 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 159185981 Common - dioxygenase Atu3979 36 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 15891681 Common exuR transcriptional regulator, GntR family Atu3252 142 COG2186 FadR, Transcriptional regulators Transcription 159186051 Pathogen - hypothetical protein Atu4168 1 COG4575 ElaB, Uncharacterized conserved protein Function unknown 159186286 Common fdhF formate dehydrogenase alpha subunit Atu4708 215 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 15891164 Common kdpD two component sensor kinase Atu3787 221 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 159185571 Common - dehydrogenase Atu3027 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 159186158 Common - ABC transporter, membrane spanning protein (spermidine/putrescine) Atu4422 195 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 159185992 Common kgtP MFS permease Atu4017 141 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 159185953 Common repC replication protein C Atu3922 17 None None None 15890820 Common putA bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase Atu4157 220 COG4230 COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase Energy production and conversion 15890595 Common norB nitric oxide reductase, cytochrome b subunit Atu4388 110 COG3256 NorB, Nitric oxide reductase large subunit Inorganic ion transport and metabolism 159185627 Common - ABC transporter, membrane spanning protein Atu3157 2 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 15890241 Common - ABC transporter, nucleotide binding/ATPase protein (amino acid) Atu4752 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 15890448 Common pcaB 3-carboxy-cis,cis-muconate cycloisomerase Atu4538 226 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 15891655 Common - aryl-alcohol dehydrogenase Atu3278 184 COG4989 COG4989, Predicted oxidoreductase General function prediction only 15890438 Common pcaJ 3-oxoadipate CoA-transferase subunit B Atu4548 92 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 15890483 Common cobW cobalamin synthesis protein Atu4502 127 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 15890577 Common napE periplasmic nitrate reductase protein NapE Atu4405 8 COG4459 NapE, Periplasmic nitrate reductase system, NapE component Energy production and conversion 159186010 Common exoH succinoglycan biosynthesis protein Atu4056 5 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 15891830 Common ugpB ABC transporter, substrate binding protein (sn-glycerol 3-phosphate) Atu3096 85 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159186130 Common - hypothetical protein Atu4354 7 COG1409 Icc, Predicted phosphohydrolases General function prediction only 159185882 Common pgk phosphoglycerate kinase Atu3739 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 15891803 Common - hypothetical protein Atu3126 3 None None None 15890291 Common - transcriptional regulator, GntR family Atu4702 135 COG1802 GntR, Transcriptional regulators Transcription 159185833 Common - hypothetical protein Atu3631 45 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 159185972 Common - transcriptional regulator, GntR family Atu3961 115 COG1802 GntR, Transcriptional regulators Transcription 159185831 Common bolA stress induced morphogen Atu3624 88 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 15890280 Common - hypothetical protein Atu4713 2 None None None 15891537 Common - ABC transporter, substrate binding protein (iron) Atu3396 69 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 159185868 Common - hypothetical protein Atu3705 22 COG4395 COG4395, Uncharacterized protein conserved in bacteria Function unknown 17937979 Pathogen - hypothetical protein Atu4290 1 None None None 159185569 Common - transcriptional regulator, GntR family Atu3020 132 COG1802 GntR, Transcriptional regulators Transcription 159186200 Common livJ ABC transporter, substrate binding protein (branched amino acid) Atu4519 102 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 159185786 Common - hypothetical protein Atu3541 16 COG3672 COG3672, Predicted periplasmic protein Function unknown 15891024 Pathogen - hypothetical protein Atu3942 1 None None None 159185961 Common - N-formimino-L-glutamate deiminase Atu3935 136 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 15890719 Common - hypothetical protein Atu4263 56 COG2828 COG2828, Uncharacterized protein conserved in bacteria Function unknown 159185797 Common exsH endo-1,3-1,4-beta-glycanase Atu3564 113 COG2273 SKN1, Beta-glucanase/Beta-glucan synthetase Carbohydrate transport and metabolism 159185910 Common rbsB ABC transporter, substrate binding protein (ribose) Atu3821 103 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15891544 Common - ABC transporter, membrane spanning protein (iron) Atu3389 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 15890745 Common - hypothetical protein Atu4237 23 None None None 15891866 Common - ABC transporter, nucleotide binding/ATPase protein Atu3060 249 COG4178 COG4178, ABC-type uncharacterized transport system, permease and ATPase components General function prediction only 15890814 Common - two component sensor kinase Atu4164 45 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 159185776 Common comF competence protein F Atu3512 161 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 159185729 Common lrp transcriptional regulator, AsnC family Atu3413 151 COG1522 Lrp, Transcriptional regulators Transcription 15890368 Common dppC ABC transporter, membrane spanning protein (dipeptide) Atu4622 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15890434 Common - ABC transporter, substrate binding protein Atu4552 93 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159186353 Common - hypothetical protein Atu4875 6 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 159185689 Common - transcriptional regulator, LuxR family Atu3318 149 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 15891056 Common nrtC ABC transporter, nucleotide binding/ATPase protein (nitrate) Atu3906 79 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 159185679 Common - transcriptional regulator, GntR family Atu3294 119 COG1802 GntR, Transcriptional regulators Transcription 15891904 Common - ABC transporter, membrane spanning protein (sugar) Atu3022 148 COG4209 LplB, ABC-type polysaccharide transport system, permease component Carbohydrate transport and metabolism 17937558 Pathogen - hypothetical protein Atu3853 1 None None None 17937735 Common - hypothetical protein Atu4039 3 None None None 15891887 Common - ABC transporter, nucleotide binding/ATPase protein (dipeptide) Atu3038 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 159186267 Common - ABC transporter, nucleotide binding/ATPase protein Atu4667 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 159185704 Common - ABC transporter, nucleotide binding/ATPase protein Atu3349 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15890256 Common - hypothetical protein Atu4737 3 None None None 159186277 Common - ABC transporter, substrate binding protein (oligopeptide) Atu4695 201 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 159186370 Pathogen - hypothetical protein Atu8097 1 COG5434 PGU1, Endopygalactorunase Cell envelope biogenesis, outer membrane 15891429 Common - hypothetical protein Atu3509 47 COG5319 COG5319, Uncharacterized protein conserved in bacteria Function unknown 15891698 Common - NAD binding oxidoreductase Atu3234 114 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15890525 Common ada 6-O-methylguanine-DNA methyltransferase Atu4459 208 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 17937222 Pathogen pilA fimbriae associated protein Atu3514 1 COG3847 Flp, Flp pilus assembly protein, pilin Flp Intracellular trafficking and secretion 15890746 Common - dehydrogenase Atu4236 172 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 15891065 Common glpD glycerol-3-phosphate dehydrogenase Atu3897 152 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 15890309 Common - hypothetical protein Atu4684 47 COG3938 COG3938, Proline racemase Amino acid transport and metabolism 15891051 Common - hypothetical protein Atu3911 41 COG4336 COG4336, Uncharacterized conserved protein Function unknown 159185710 Common - ABC transporter, nucleotide binding/ATPase protein (amino acid) Atu3360 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 159185715 Common - amidohydrolase Atu3374 123 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 159186362 Common - hypothetical protein Atu8032 6 None None None 159186139 Common - hypothetical protein Atu4378 7 None None None 159185872 Common - hypothetical protein Atu3712 100 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 15891897 Common - hypothetical protein Atu3028 7 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 15890879 Common - hypothetical protein Atu4095 18 COG2261 COG2261, Predicted membrane protein Function unknown 15891840 Common - ABC transporter, membrane spanning protein (spermidine/putrescine) Atu3086 198 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 15891181 Common - outer membrane lipoprotein Atu3769 7 None None None 17937874 Pathogen - hypothetical protein Atu4179 1 None None None 15890877 Common nadB L-aspartate oxidase Atu4097 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 15890239 Common - ABC transporter, membrane spanning protein (amino acid) Atu4754 171 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 159185857 Common - Thioesterase, putative siderophore biosynthesis protein Atu3685 49 COG3208 GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 15890345 Common vdh vanillin: NAD oxidoreductase (Putative) Atu4645 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 15890354 Common - AcrB/AcrD/AcrF family protein Atu4636 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 15891682 Common - haloacid dehalogenase-like hydrolase Atu3251 159 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 159186042 Common - hypothetical protein Atu4146 16 COG3930 COG3930, Uncharacterized protein conserved in bacteria Function unknown 15891075 Common hspL small heat shock protein Atu3887 68 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 15891753 Common - transcriptional regulator, GntR family Atu3176 116 COG2186 FadR, Transcriptional regulators Transcription 17938359 Pathogen - hypothetical protein Atu4670 1 None None None 15890566 Common - phosphopantetheinyl transferase Atu4416 39 COG2977 EntD, Phosphopantetheinyl transferase component of siderophore synthetase Secondary metabolites biosynthesis, transport, and catabolism 159186225 Common - ABC transporter, membrane spanning protein Atu4571 189 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 15891648 Common - alpha-glucosidase Atu3285 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 15890225 Common - hypothetical protein Atu4768 16 None None None 15891858 Common - ribokinase Atu3068 138 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 159186220 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu4559 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 159186021 Common - aspartate racemase Atu4081 78 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 159185912 Pathogen - hypothetical protein Atu3837 1 None None None 15890233 Common - transcriptional regulator, GntR family Atu4760 202 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 159186195 Common pckR transcriptional regulator, LacI family Atu4505 127 COG1609 PurR, Transcriptional regulators Transcription 159185743 Pathogen - hypothetical protein Atu3443 1 None None None 15890736 Common - ABC transporter, nucleotide binding/ATPase protein (polyamine) Atu4246 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 159186237 Common - hypothetical protein Atu4592 12 COG3971 COG3971, 2-keto-4-pentenoate hydratase Secondary metabolites biosynthesis, transport, and catabolism 159185979 Common - hypothetical protein Atu3976 51 COG3914 Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family Posttranslational modification, protein turnover, chaperones 15890446 Common pcaH protocatechuate 3,4-dioxygenase beta chain Atu4540 47 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 159185785 Common - ABC transporter, substrate binding protein (sugar) Atu3533 10 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159185614 Common - cold shock protein Atu3122 3 None None None 15891327 Common hisC histidinol-phosphate aminotransferase Atu3612 238 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 15891506 Pathogen - hypothetical protein Atu3429 1 None None None 15890575 Common napD periplasmic nitrate reductase, NapD protein Atu4407 12 COG3062 NapD, Uncharacterized protein involved in formation of periplasmic nitrate reductase Inorganic ion transport and metabolism 17937352 Pathogen - hypothetical protein Atu3645 1 None None None 159185994 Common - hypothetical protein Atu4020 62 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 159186260 Common - hypothetical protein Atu4656 21 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 159186191 Common - hypothetical protein Atu4495 37 COG2979 COG2979, Uncharacterized protein conserved in bacteria Function unknown 15891071 Common - hypothetical protein Atu3891 29 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159185936 Common - hypothetical protein Atu3892 25 COG5477 COG5477, Predicted small integral membrane protein Function unknown 159186091 Common - hypothetical protein Atu4270 112 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 159186325 Common - dTDP-4-dehydrorhamnose 3,5-epimerase Atu4799 163 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 159186093 Common - hypothetical protein Atu4277 100 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 159186263 Common agpA ABC transporter, substrate binding protein (alpha-galactoside) Atu4661 137 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15890680 Common - hypothetical protein Atu4302 20 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 15891311 Common xerD site-specific tyrosine recombinase XerD Atu3629 222 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 159185662 Common - ABC transporter, substrate binding protein Atu3260 100 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 15890122 Common - putative oxidoreductase Atu4868 196 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 15890554 Common - phosphoribosyltransferase Atu4429 5 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 159186181 Common xylB xylulokinase Atu4482 182 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 159185680 Common - hypothetical protein Atu3295 9 None None None 15891704 Common dnaE DNA polymerase III, alpha chain Atu3228 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 159186084 Common - ABC transporter, nucleotide binding/ATPase protein (oligopeptide) Atu4256 249 COG4172 COG4172, ABC-type uncharacterized transport system, duplicated ATPase component General function prediction only 15891273 Common - siderophore biosynthesis protein Atu3671 58 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 15891553 Common dppB ABC transporter, membrane spanning protein (peptide) Atu3379 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159186034 Common - GMC type oxidoreductase Atu4128 90 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 159185765 Common - ABC transporter, substrate binding protein (sugar) Atu3487 93 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159185693 Common - secretion protein, HlyD family Atu3323 119 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 15891663 Pathogen - hypothetical protein Atu3270 1 None None None 15890458 Common - hypothetical protein Atu4528 8 COG1359 COG1359, Uncharacterized conserved protein Function unknown 159185879 Common - hypothetical protein Atu3728 27 COG3871 COG3871, Uncharacterized stress protein (general stress protein 26) General function prediction only 159185792 Common - exopolysaccharide polymerization/transport protein Atu3556 140 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 15890296 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu4697 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15891092 Common ldhA D-lactate dehydrogenase Atu3870 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 15891117 Pathogen - hypothetical protein Atu3835 1 None None None 15891014 Common - ABC transporter, membrane spanning protein Atu3955 198 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 15891204 Common - putative FAD-binding dehydrogenase Atu3745 27 COG3573 COG3573, Predicted oxidoreductase General function prediction only 159186321 Common fcl GDP-fucose synthetase Atu4790 183 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 15890904 Common soxD sarcosine oxidase delta subunit Atu4068 31 COG4311 SoxD, Sarcosine oxidase delta subunit Amino acid transport and metabolism 159185951 Pathogen - hypothetical protein Atu3919 1 None None None 15891686 Common - ABC transporter, substrate binding protein (amino acid) Atu3246 147 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 159185903 Common proW ABC transporter, membrane spanning protein (proline/glycine betaine) Atu3801 174 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 15891233 Common tolA hypothetical protein Atu3715 19 COG5373 COG5373, Predicted membrane protein Function unknown 15891408 Common - transcriptional regulator, GntR family Atu3532 136 COG1802 GntR, Transcriptional regulators Transcription 159186043 Common gshB glutathione synthetase Atu4147 132 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 159186307 Common tdcB threonine dehydratase Atu4759 216 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 159185582 Common - putative AgaE Atu3050 66 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 15890709 Common accB acetyl-CoA carboxylase biotin carboxyl carrier protein Atu4272 176 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 15890931 Common - hypothetical protein Atu4040 50 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 15891172 Common mltB lytic murein transglycosylase Atu3779 101 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 159186002 Common - two component response regulator Atu4035 147 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 159185624 Common - ABC transporter, membrane spanning protein (sugar) Atu3149 176 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15891618 Common - hypothetical protein Atu3317 3 None None None 159185829 Common cobS cobalamin biosynthesis protein Atu3622 69 COG0714 COG0714, MoxR-like ATPases General function prediction only 15890698 Common - ABC transporter, nucleotide binding/ATPase protein Atu4283 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 159185598 Common - ABC transporter, membrane spanning protein (spermidine/putrescine) Atu3087 185 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 159186174 Common - hypothetical protein Atu4467 9 None None None 15890193 Common - hypothetical protein Atu4798 44 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 15891497 Common - putative oxidoreductase Atu3438 202 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 15890420 Common - ABC transporter, substrate binding protein Atu4568 23 COG4134 COG4134, ABC-type uncharacterized transport system, periplasmic component General function prediction only 15890510 Common - transporter Atu4475 128 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 15891821 Common celI hypothetical protein Atu3105 9 COG4189 COG4189, Predicted transcriptional regulator Transcription 15890478 Common - dehydrogenase Atu4507 229 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 15890821 Common - ABC transporter, nucleotide binding/ATPase protein (aliphatic sulfonate) Atu4156 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 159185861 Common - sigma factor Atu3692 68 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 159186064 Common - transcriptional regulator, ROK family Atu4207 100 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 15891124 Common - acetyltransferase Atu3828 11 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 159185586 Common - hypothetical protein Atu3055 8 None None None 159186170 Common - ABC transporter, membrane spanning protein (sorbitol/mannitol) Atu4448 143 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15891816 Common - hypothetical protein Atu3110 3 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 15891319 Common - hypothetical protein Atu3620 23 COG4246 COG4246, Uncharacterized protein conserved in bacteria Function unknown 17937334 Pathogen - hypothetical protein Atu3627 1 None None None 15891256 Common fecC ABC transporter, membrane spanning protein (iron(III) dicitrate) Atu3689 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 159186113 Common - transcriptional regulator, AraC family Atu4319 127 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 159186165 Common - ABC transporter, substrate binding protein (oligopeptide) Atu4438 205 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15891519 Common - putative AgaE Atu3414 94 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 159185732 Common - hippurate hydrolase Atu3419 172 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 15890342 Common betC choline sulfatase Atu4648 84 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 159185794 Common - glycosyltransferase Atu3558 95 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15891252 Common fecR two component sensor kinase Atu3693 48 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 15891259 Common - putative siderophore biosynthesis protein Atu3686 4 COG4114 FhuF, Uncharacterized Fe-S protein General function prediction only 159185830 Common dnaJ molecular chaperone, DnaJ family Atu3623 192 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 159185980 Common ina ice nucleation-like protein Atu3977 15 None None None 15891877 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu3048 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15890482 Common - creatinine amidohydrolase Atu4503 79 COG1402 COG1402, Uncharacterized protein, putative amidase General function prediction only 15890165 Common - dehydrogenase Atu4825 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15890923 Common - 2-hydroxyacid dehydrogenase Atu4048 226 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 159185578 Common asg asparaginase Atu3044 83 COG1446 COG1446, Asparaginase Amino acid transport and metabolism 15891112 Pathogen - hypothetical protein Atu3842 2 None None None 15890240 Common - ABC transporter, membrane spanning protein (amino acid) Atu4753 169 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 159185806 Pathogen - hypothetical protein Atu3582 1 None None None 159185749 Common - RhtB family transporter Atu3460 110 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 159185574 Common - transcriptional regulator, ROK family Atu3034 136 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 15891545 Common fecE ABC transporter, nucleotide binding/ATPase protein (iron) Atu3388 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 15891183 Common - GGDEF family protein Atu3767 177 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 15891101 Common - hypothetical protein Atu3860 68 COG3919 COG3919, Predicted ATP-grasp enzyme General function prediction only 159186031 Pathogen - hypothetical protein Atu4106 1 None None None 159185968 Common - ABC transporter, nucleotide binding/ATPase protein Atu3956 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 15891800 Common picA polygalacturonase-like protein Atu3129 26 COG5434 PGU1, Endopygalactorunase Cell envelope biogenesis, outer membrane 15890985 Common - MFS permease Atu3984 111 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 159185837 Common rpsU 30S ribosomal protein S21 Atu3637 64 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 159186059 Common - ABC transporter, nucleotide binding/ATPase protein (oligopeptide) Atu4195 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 159186209 Common pcaQ transcriptional regulator, LysR family Atu4543 188 COG0583 LysR, Transcriptional regulator Transcription 15891676 Common uxuA mannonate dehydratase Atu3257 58 COG1312 UxuA, D-mannonate dehydratase Carbohydrate transport and metabolism 15891865 Common - GGDEF family protein Atu3061 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 15890776 Common tetA tetracycline resistance protein Atu4206 194 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15890461 Common - ABC transporter, substrate binding protein (oligopeptide) Atu4525 204 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 159186283 Common - hypothetical protein Atu4703 92 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 15891352 Common alkA DNA-3-methyladenine glycosidase II Atu3588 105 COG0122 AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase DNA replication, recombination, and repair 15890574 Common napA periplasmic nitrate reductase large subunit Atu4408 184 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 15891601 Common - 3-ketoacyl-(acyl-carrier-protein) reductase Atu3333 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159185816 Common argH argininosuccinate lyase Atu3599 234 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 15890197 Common bme12 polysaccharide biosynthesis protein Atu4794 139 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 15891451 Common - transcriptional regulator, DeoR family Atu3486 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 15891818 Common - hypothetical protein Atu3108 19 COG4289 COG4289, Uncharacterized protein conserved in bacteria Function unknown 159186256 Common - hypothetical protein Atu4647 62 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 15890659 Common rdh ribitol 2-dehydrogenase Atu4323 236 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 159185906 Common - hypothetical protein Atu3814 42 COG3254 COG3254, Uncharacterized conserved protein Function unknown 15890957 Common idhA myo-inositol 2-dehydrogenase Atu4012 185 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15890344 Common - transcriptional regulator, LysR family Atu4646 176 COG0583 LysR, Transcriptional regulator Transcription 15890286 Common nuoF NADH ubiquinone oxidoreductase chain F Atu4707 167 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 159186311 Common - hypothetical protein Atu4769 105 COG1878 COG1878, Predicted metal-dependent hydrolase General function prediction only 159185781 Common secA preprotein translocase subunit SecA Atu3520 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 15890876 Common nadA quinolinate synthetase Atu4098 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 159186050 Common galE/exoB UDP-glucose 4-epimerase Atu4166 233 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 15891206 Common rpmE 50S ribosomal protein L31 Atu3743 127 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 159185976 Common - ABC transporter, membrane spanning protein (sugar) Atu3969 143 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15891829 Common ugpA ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate) Atu3097 143 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 159186108 Common - hypothetical protein Atu4307 78 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 159185747 Common - ABC transporter, nucleotide binding/ATPase protein Atu3456 249 COG1124 DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 159185602 Common - transglycosylase Atu3093 38 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 159185609 Common - ABC transporter, membrane spanning protein (sugar) Atu3113 156 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15890312 Common - ABC transporter, nucleotide binding/ATPase protein (amino acid) Atu4681 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 15890276 Common - transcriptional regulator, LuxR family Atu4716 137 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 15891487 Common - nitrilotriacetate monooxygenase Atu3450 69 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 15890210 Common drrA two component response regulator Atu4782 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 15891190 Common - hypothetical protein Atu3760 35 COG3931 COG3931, Predicted N-formylglutamate amidohydrolase Amino acid transport and metabolism 159185817 Common - hypothetical protein Atu3602 28 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 15890153 Common csgA C factor Atu4839 68 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159186202 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu4524 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159185690 Pathogen - hypothetical protein Atu3319 1 None None None 15890902 Common soxG sarcosine oxidase gamma subunit Atu4070 28 COG4583 COG4583, Sarcosine oxidase gamma subunit Amino acid transport and metabolism 159186367 Common rpmJ 50S ribosomal protein L36 Atu8067 71 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 159186144 Common - hypothetical protein Atu4383 60 COG3213 NnrS, Uncharacterized protein involved in response to NO Inorganic ion transport and metabolism 159185694 Common - hypothetical protein Atu3324 6 None None None 15891121 Common int phage-related integrase Atu3831 103 COG0582 XerC, Integrase DNA replication, recombination, and repair 159185720 Common - ABC transporter, membrane spanning protein (iron (III)) Atu3395 192 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 15891886 Common - hydantoinase beta subunit-like protein Atu3039 96 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 159185858 Common - TonB-dependent receptor Atu3687 92 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 15890492 Common - hypothetical protein Atu4493 48 COG2954 COG2954, Uncharacterized protein conserved in bacteria Function unknown 15891002 Common - ABC transporter, substrate binding protein (sugar) Atu3967 35 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15890537 Common - hypothetical protein Atu4446 62 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 15891119 Pathogen - hypothetical protein Atu3833 1 None None None 15891157 Common aspA aspartate ammonia-lyase Atu3793 227 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 15891196 Common purE phosphoribosylaminoimidazole carboxylase catalytic subunit Atu3754 232 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 159185592 Common - aspartate racemase Atu3073 82 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 159186096 Common menG S-adenosylmethionine:2-demethylmenaquinone methyltransferase Atu4285 79 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 15891476 Common - transcriptional regulator, AraC family Atu3462 149 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 15890194 Common rfbF glucose-1-phosphate cytidylyltransferase Atu4797 148 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 15891610 Common exoQ exopolysaccharide production protein Atu3325 18 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 15891635 Common dctA C4-dicarboxylate transporter DctA Atu3298 163 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 15890893 Common - glutamine amidotransferase Atu4080 67 COG0121 COG0121, Predicted glutamine amidotransferase General function prediction only 159186131 Common - hypothetical protein Atu4363 80 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15890544 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu4439 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15890365 Common uxuA mannonate dehydratase Atu4625 57 COG1312 UxuA, D-mannonate dehydratase Carbohydrate transport and metabolism 15891746 Pathogen - hypothetical protein Atu3183 1 None None None 159186223 Common - transcriptional regulator, ROK family Atu4567 89 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 159186152 Common - transcriptional regulator, LysR family Atu4411 183 COG0583 LysR, Transcriptional regulator Transcription 159185632 Common - zinc-binding dehydrogenase Atu3163 205 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 159185892 Common - 5'-nucleotidase Atu3770 143 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 159186303 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu4745 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 15890132 Common traG Agrobacterium virulence virD4-like protein Atu4858 77 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 159185926 Pathogen - hypothetical protein Atu3872 1 None None None 159185645 Common - ABC transporter, substrate binding protein (ribose) Atu3198 84 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15890622 Common - ABC transporter, substrate binding protein (sugar) Atu4361 134 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159186331 Common rfe undecaprenyl-phosphate alpha N-acetylglucosaminyltransferase Atu4811 172 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 15890141 Common - hypothetical protein Atu4850 8 None None None 159186006 Common - ABC transporter, substrate binding protein (glycine betaine) Atu4046 36 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 159186349 Common traA conjugation protein Atu4855 118 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 15891757 Common - ABC transporter, membrane spanning protein (sugar) Atu3172 197 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 159185659 Common minC septum formation inhibitor Atu3249 103 COG0850 MinC, Septum formation inhibitor Cell division and chromosome partitioning 15890229 Common - acetyltransferase Atu4764 120 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 159186126 Pathogen - hypothetical protein Atu4346 5 None None None 15891128 Common metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Atu3823 145 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 159186159 Common - replicative DNA helicase Atu4427 14 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 15890118 Common - transcriptional regulator, LysR family Atu4872 152 COG0583 LysR, Transcriptional regulator Transcription 159185642 Common - MFS permease Atu3192 99 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 159186029 Common - hypothetical protein Atu4099 63 COG4111 COG4111, Uncharacterized conserved protein General function prediction only 159185759 Common mccA 3-methylcrotonyl-CoA carboxylase alpha subunit Atu3479 233 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 15890177 Common bme6 glycosyltransferase Atu4815 204 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15891396 Common - hypothetical protein Atu3545 2 COG5178 PRP8, U5 snRNP spliceosome subunit RNA processing and modification 15891225 Common ruvA Holliday junction DNA helicase motor protein Atu3723 210 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 159185883 Common - hypothetical protein Atu3742 18 COG5317 COG5317, Uncharacterized protein conserved in bacteria Function unknown 15890128 Common istA IS21 family transposase Atu4862 77 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 15890219 Common nodW two component response regulator Atu4774 207 COG4566 TtrR, Response regulator Signal transduction mechanisms 159185750 Common - hypothetical protein Atu3467 71 COG2391 COG2391, Predicted transporter component General function prediction only 159185684 Common celD cellulose biosynthesis protein Atu3302 16 COG5653 COG5653, Protein involved in cellulose biosynthesis (CelD) Cell envelope biogenesis, outer membrane 15890576 Common napF periplasmic nitrate reductase, ferredoxin-like protein Atu4406 90 COG1245 COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog General function prediction only 15890470 Common livG ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid) Atu4516 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 159185840 Pathogen - hypothetical protein Atu3644 1 None None None 159186316 Common afuA ABC transporter, substrate binding protein (iron) Atu4784 105 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 15891588 Common exsC 6-pyruvoyl tetrahydropterin synthase Atu3345 126 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 15891276 Common - siderophore biosynthesis protein Atu3668 72 COG1959 COG1959, Predicted transcriptional regulator Transcription 15891736 Common - transcriptional regulator, MarR family Atu3193 47 COG1846 MarR, Transcriptional regulators Transcription 15890724 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu4258 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15891751 Common - ABC transporter, substrate binding protein Atu3178 151 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 15891189 Common - hypothetical protein Atu3761 18 COG5480 COG5480, Predicted integral membrane protein Function unknown 15891774 Common - transcriptional regulator, LysR family Atu3155 143 COG0583 LysR, Transcriptional regulator Transcription 15890351 Common - two component sensor kinase Atu4639 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 15890098 Common - hypothetical protein Atu4889 2 None None None 159186230 Common - ABC transporter, nucleotide binding/ATPase protein Atu4578 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 159186173 Common - oxidoreductase Atu4466 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159186041 Common - hypothetical protein Atu4145 9 COG3741 HutG, N-formylglutamate amidohydrolase Amino acid transport and metabolism 15891525 Common hadL 2-haloalkanoic acid dehalogenase Atu3408 26 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 15891067 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu3895 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 159186242 Common rfbA glucose-1-phosphate thymidylyltransferase Atu4615 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 15891790 Common - hypothetical protein Atu3139 134 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 15890268 Common - hypothetical protein Atu8200 2 None None None 159186020 Pathogen - hypothetical protein Atu4079 1 None None None 15890560 Common - ABC transporter, membrane spanning protein Atu4423 222 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 159186196 Common iolC myo-inositol catabolism IolC protein Atu4512 154 COG3892 COG3892, Uncharacterized protein conserved in bacteria Function unknown 15890370 Common dppF ABC transporter, nucleotide binding/ATPase protein (dipeptide) Atu4620 249 COG1124 DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15891597 Pathogen - hypothetical protein Atu3336 1 None None None 159186061 Pathogen - hypothetical protein Atu4200 1 None None None 159186192 Common - acetyltransferase Atu4496 82 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 159186116 Common cbr short chain dehydrogenase Atu4325 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159185991 Common exsI transcriptional regulator Atu4014 4 COG1396 HipB, Predicted transcriptional regulators Transcription 15891405 Common - ABC transporter, membrane spanning protein Atu3535 161 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 159185828 Common cobT cobyrinic acid synthase Atu3621 43 COG4547 CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) Coenzyme metabolism 15891304 Common - hypothetical protein Atu3636 2 None None None 15890833 Common pfpI proteinase Atu4142 164 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 15891706 Common - transcriptional regulator, GntR family Atu3226 85 COG2186 FadR, Transcriptional regulators Transcription 15890686 Common - dehydrogenase Atu4296 82 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 159185583 Common - transcriptional regulator, MarR family Atu3052 29 COG1846 MarR, Transcriptional regulators Transcription 15891122 Common - MFS permease Atu3830 58 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 159186264 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu4663 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159186293 Common - hypothetical protein Atu4724 55 COG3237 COG3237, Uncharacterized protein conserved in bacteria Function unknown 159186177 Common sitA ABC transporter, substrate binding protein (iron) Atu4471 182 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 15890901 Common - hypothetical protein Atu4071 23 COG4427 COG4427, Uncharacterized protein conserved in bacteria Function unknown 15891654 Common - methanesulfonate sulfonatase Atu3279 73 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 159186085 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu4257 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159185705 Common - ABC transporter, membrane spanning protein Atu3350 153 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15891535 Common argE acetylornithine deacetylase Atu3398 211 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 159185723 Common - aldehyde dehydrogenase Atu3401 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 159185937 Common cysG siroheme synthase Atu3899 203 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 159185615 Common rspF acetyltransferase Atu3127 12 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 159186337 Common - ABC transporter, substrate binding protein Atu4826 97 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 15890956 Common cyaA putative adenylate cyclase Atu4013 80 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 159186229 Common - ABC transporter, substrate binding protein Atu4577 139 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 15891843 Common - hypothetical protein Atu3083 4 None None None 159186238 Common - dehydrogenase Atu4595 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15890520 Common kdgR transcriptional regulator Atu4465 101 COG1414 IclR, Transcriptional regulator Transcription 15890890 Common - putative aldose epimerase Atu4083 61 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 159186014 Common exoX exopolysaccharide production repressor protein Atu4061 2 None None None 159186212 Common pcaR transcriptional regulator, IclR family Atu4546 118 COG1414 IclR, Transcriptional regulator Transcription 159185651 Common - GGDEF family protein Atu3207 178 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 159185805 Common gloA lactoylglutathione lyase Atu3579 87 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 15890372 Common rfbC dTDP-rhamnose-3,5-epimerase Atu4618 166 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 15891640 Common dadA D-amino acid dehydrogenase small subunit Atu3293 143 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 15890743 Common - flavoprotein oxidoreductase Atu4239 120 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 159186322 Pathogen - hypothetical protein Atu4791 1 None None None 15890730 Common - ABC transporter, substrate binding protein (sugar) Atu4252 79 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15890807 Common deaD cold-shock dead-box protein A Atu4171 239 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 15891269 Common - putative siderophore biosynthesis protein Atu3676 122 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 15891919 Pathogen - hypothetical protein Atu3006 1 None None None 15891438 Common - hypothetical protein Atu3500 36 COG4335 COG4335, DNA alkylation repair enzyme DNA replication, recombination, and repair 159185944 Common - transcriptional regulator, GntR family Atu3908 119 COG1802 GntR, Transcriptional regulators Transcription 159185802 Common xylH ABC transporter, membrane spanning protein (xylose) Atu3575 121 COG4214 XylH, ABC-type xylose transport system, permease component Carbohydrate transport and metabolism 15891205 Common - ABC transporter, nucleotide binding/ATPase protein Atu3744 248 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 15891507 Common - hypothetical protein Atu3428 55 COG3545 COG3545, Predicted esterase of the alpha/beta hydrolase fold General function prediction only 159185864 Common lonD ATP-dependent protease LA 2 Atu3697 81 COG2802 COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease General function prediction only 159185905 Common - oxidoreductase Atu3809 188 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 15891797 Common - ABC transporter, membrane spanning protein (sugar) Atu3132 175 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15891442 Common - GGDEF family protein Atu3495 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 159185711 Pathogen - hypothetical protein Atu3365 2 None None None 159185740 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu3434 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159186160 Common - amidohydrolase Atu4428 170 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 15890811 Pathogen - hypothetical protein Atu4167 1 None None None 159185795 Common - glycosyltransferase Atu3559 182 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15891302 Common - hypothetical protein Atu3638 4 None None None 159185597 Common sigW RNA polymerase sigma factor Atu3084 170 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 159185960 Common hutI imidazolonepropionase Atu3934 110 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 15891131 Common rbsC ABC transporter, membrane spanning protein (ribose) Atu3819 107 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 159185917 Common - hypothetical protein Atu3851 2 None None None 159185733 Common - monooxygenase Atu3420 69 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 15890433 Common iolH myo-inositol catabolism protein Atu4553 21 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 159185851 Common - siderophore biosynthesis protein Atu3670 215 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 15890919 Common exoM UDP-hexose transferase Atu4052 21 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15891905 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu3021 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 159185775 Common - amidohydrolase Atu3510 201 COG0388 COG0388, Predicted amidohydrolase General function prediction only 15890148 Common rbsC ABC transporter, membrane spanning protein (sugar) Atu4844 156 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 15891580 Common manC mannose-1-phosphate guanylyltransferase (GDP) Atu3353 164 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 159185930 Common - transcriptional regulator Atu3878 69 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 159186249 Common - oxidoreductase Atu4629 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159186036 Common - transcriptional regulator, AraC family Atu4132 70 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 159186180 Common - hypothetical protein Atu4476 120 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 15891685 Common minE cell division topological specificity factor MinE Atu3247 80 COG0851 MinE, Septum formation topological specificity factor Cell division and chromosome partitioning 15890939 Common - ABC transporter, membrane spanning protein (sugar) Atu4031 88 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 15890779 Common - hypothetical protein Atu4203 107 COG1881 COG1881, Phospholipid-binding protein General function prediction only 15890970 Common bioF 8-amino-7-oxononanoate synthase Atu3998 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 15891351 Common gltX glutamyl-Q tRNA(Asp) synthetase Atu3589 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 15891828 Common ugpE ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate) Atu3098 143 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15890182 Common - hypothetical protein Atu4810 13 None None None 159185973 Common - calcium-binding protein, regucalcin Atu3962 61 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 159186005 Common - ABC transporter, membrane spanning protein (glycine betaine) Atu4045 211 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 159186284 Common huy hydantoin racemase Atu4704 44 COG4126 COG4126, Hydantoin racemase Amino acid transport and metabolism 15891357 Common - hypothetical protein Atu3583 44 COG1859 KptA, RNA:NAD 2'-phosphotransferase Translation, ribosomal structure and biogenesis 15891381 Common - glycosyltransferase Atu3560 217 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 159186266 Common melA alpha-galactosidase Atu4665 54 COG1486 CelF, Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases Carbohydrate transport and metabolism 15891760 Common - ABC transporter, membrane spanning protein (sorbitol/mannitol) Atu3169 144 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15890754 Common fwdC formyl-methanofuran dehydrogenase Atu4228 61 COG0070 GltB, Glutamate synthase domain 3 Amino acid transport and metabolism 159185813 Common - hypothetical protein Atu3594 105 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 159186102 Common aroE shikimate 5-dehydrogenase Atu4295 224 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 159186348 Pathogen - hypothetical protein Atu4853 1 None None None 15891713 Common ilvD dihydroxy-acid dehydratase Atu3219 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 15891143 Common lrp transcriptional regulator, AsnC family Atu3807 145 COG1522 Lrp, Transcriptional regulators Transcription 15890117 Common - transcriptional regulator, TetR family Atu4873 44 COG1309 AcrR, Transcriptional regulator Transcription 15891130 Common rbsC ABC transporter, membrane spanning protein (ribose) Atu3820 120 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 159186359 Common tnp transposase Atu4894 73 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 15891176 Common kpsF capsule expression protein Atu3774 168 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 159186143 Common nirK nitrite reductase, copper-containing Atu4382 47 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 15890864 Common sdh serine dehydrogenase Atu4110 236 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 159186063 Common tetR transcriptional regulator, TetR family Atu4205 50 COG1309 AcrR, Transcriptional regulator Transcription 159186310 Common - hypothetical protein Atu4767 3 None None None 15890669 Common soxG sarcosine oxidase gamma subunit Atu4313 23 COG4583 COG4583, Sarcosine oxidase gamma subunit Amino acid transport and metabolism 15891504 Common acd acyl-CoA dehydrogenase Atu3431 144 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 15891895 Common - hypothetical protein Atu3030 3 COG4285 COG4285, Uncharacterized conserved protein Function unknown 15891154 Common - efflux protein Atu3796 138 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 15891913 Common - hypothetical protein Atu3013 17 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 159185612 Pathogen - hypothetical protein Atu3120 1 None None None 159185780 Common ppiD peptidyl-prolyl cis-trans isomerase Atu3519 158 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 15890168 Common - acyl-CoA synthetase Atu4822 222 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15891226 Common ruvB Holliday junction DNA helicase B Atu3722 229 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 15890887 Common - zinc-binding dehydrogenase Atu4087 191 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 159186164 Common - transcriptional regulator, LysR family Atu4437 186 COG0583 LysR, Transcriptional regulator Transcription 17937789 Pathogen - hypothetical protein Atu4093 1 None None None 15891653 Common - transcriptional regulator, GntR family Atu3280 115 COG2188 PhnF, Transcriptional regulators Transcription 159185809 Common - transcriptional regulator Atu3587 48 COG3800 COG3800, Predicted transcriptional regulator General function prediction only 15891677 Common - zinc-binding dehydrogenase Atu3256 203 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 15891370 Common - hypothetical protein Atu3571 25 COG3482 COG3482, Uncharacterized conserved protein Function unknown 159186377 Common - hypothetical protein Atu8198 2 None None None 15890243 Common dpe D-psicose 3-epimerase Atu4750 45 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 159185625 Common - ABC transporter, membrane spanning protein (sugar) Atu3150 148 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15890984 Common proC pyrroline-5-carboxylate reductase Atu3985 109 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 159186087 Common - ABC transporter, membrane spanning protein Atu4260 163 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 15891832 Common mcpA methyl-accepting chemotaxis protein Atu3094 158 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 15891918 Pathogen - hypothetical protein Atu3007 1 None None None 159185730 Common - ABC transporter, substrate binding protein Atu3415 109 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 159185573 Pathogen - hypothetical protein Atu3033 1 None None None 15890183 Common - glycosyltransferase Atu4809 204 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 159186153 Common rzcA rhizobiocin/RTX toxin Atu4412 125 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism 159186189 Common - hypothetical protein Atu4492 12 COG5607 COG5607, Uncharacterized conserved protein Function unknown 15891182 Common - homospermidine synthase Atu3768 25 COG5310 COG5310, Homospermidine synthase Secondary metabolites biosynthesis, transport, and catabolism 15890460 Common - ABC transporter, nucleotide binding/ATPase protein Atu4526 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 159185712 Common - Tripartite ATP-independent periplasmic transporter, DctQ component Atu3366 74 COG4665 FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component Secondary metabolites biosynthesis, transport, and catabolism 159186302 Common - ABC transporter, substrate binding protein (sugar) Atu4744 55 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15890120 Common - NADP-dependent quinone oxidoreductase Atu4870 177 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 15891068 Common - ABC transporter, membrane spanning protein (sugar) Atu3894 147 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 159185644 Common ptxR transcriptional regulator, LysR family Atu3197 179 COG0583 LysR, Transcriptional regulator Transcription 159185884 Common motB hypothetical protein Atu3746 153 COG1360 MotB, Flagellar motor protein Cell motility and secretion 15891397 Common arsB arsenical pump membrane protein Atu3544 125 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 15891263 Common - non-ribosomal peptide synthetase, siderophore biosynthesis protein Atu3682 225 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 15891427 Common grx glutaredoxin Atu3511 125 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 15890133 Common mobC mobilization protein C Atu4857 3 None None None 15890802 Common hemK protoporphyrinogen oxidase Atu4175 228 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 15890300 Common - outer membrane protein Atu4693 13 None None None 15890209 Common afuA ABC transporter, substrate binding protein (iron) Atu4783 104 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 159185889 Common - hypothetical protein Atu3763 62 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 159186112 Common - transcriptional regulator, TetR family Atu4317 67 COG1309 AcrR, Transcriptional regulator Transcription 17937546 Pathogen - hypothetical protein Atu3841 1 None None None 159186244 Common uvrD ATP-dependent DNA helicase Atu4619 230 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 15891615 Common - fibrinogen binding protein Atu3320 4 None None None 159186028 Common nadC nicotinate-nucleotide pyrophosphorylase Atu4096 204 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 159185706 Common - pyrroloquinoline-quinone-dependent quinate dehydrogenase Atu3354 58 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 159186125 Common clpB ATP-dependent Clp protease, ATP-binding subunit Atu4344 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 159186017 Common soxB sarcosine oxidase beta subunit Atu4066 94 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 159185751 Common - hypothetical protein Atu3468 63 COG2391 COG2391, Predicted transporter component General function prediction only 15890218 Common - two component sensor kinase Atu4775 221 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 15891590 Common ThuB trehalose utilization-related protein Atu3343 127 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15891486 Common - monooxygenase Atu3451 78 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 159185987 Common - hypothetical protein Atu3996 58 COG0456 RimI, Acetyltransferases General function prediction only 15890129 Common istB IS21 family transposase Atu4861 101 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 159185685 Common celE cellulose synthesis protein Atu3303 170 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 15890662 Common rbsB ABC transporter, substrate binding protein (ribose) Atu4320 94 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159186109 Common - hypothetical protein Atu4308 38 COG5473 COG5473, Predicted integral membrane protein Function unknown 15891197 Common - hypothetical protein Atu3753 13 COG5481 COG5481, Uncharacterized conserved small protein containing a coiled-coil domain Function unknown 15890907 Common rpsU 30S ribosomal protein S21 Atu4064 40 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 15891345 Common etfB electron transfer flavoprotein beta subunit Atu3595 152 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 159185818 Common - hypothetical protein Atu3605 2 None None None 159185728 Common - ABC transporter, substrate binding protein (oligopeptide) Atu3409 188 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15890450 Common - ABC transporter, membrane spanning protein (amino acid) Atu4536 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 159185967 Common - aldehyde dehydrogenase Atu3950 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 159185635 Common scrK fructokinase Atu3166 146 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 15890154 Common - outer membrane lipoprotein Atu4838 27 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 159185721 Common - hypothetical protein Atu3397 18 COG2153 ElaA, Predicted acyltransferase General function prediction only 15890310 Common - hypothetical protein Atu4683 40 COG1679 COG1679, Uncharacterized conserved protein Function unknown 159185691 Common - hypothetical protein Atu3321 6 None None None 15891118 Pathogen - hypothetical protein Atu3834 1 None None None 159185695 Common exoY succinoglycan exopolysaccharide synthesis protein Atu3327 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 15891647 Common - ABC transporter, membrane spanning protein Atu3286 183 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 159186294 Common sodBIII superoxide dismutase Atu4726 204 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 159186330 Common pssL exopolysaccharide export protein Atu4807 81 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 15890573 Common napB periplasmic nitrate reductase small subunit Atu4409 40 COG3043 NapB, Nitrate reductase cytochrome c-type subunit Energy production and conversion 159186232 Common - ferredoxin Atu4582 159 COG1146 COG1146, Ferredoxin Energy production and conversion 15891003 Common - oxidoreductase Atu3966 173 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 159186073 Common - transcriptional regulator, GntR family Atu4232 135 COG1802 GntR, Transcriptional regulators Transcription 15891564 Common - periplasmic mannitol-binding protein Atu3368 86 COG4663 FcbT1, TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 159185799 Pathogen - hypothetical protein Atu3567 1 None None None 15891123 Common - transcriptional regulator, LysR family Atu3829 153 COG0583 LysR, Transcriptional regulator Transcription 15890631 Common - hypothetical protein Atu4352 23 COG4104 COG4104, Uncharacterized conserved protein Function unknown 15890819 Common putR transcriptional regulator, AsnC family Atu4159 166 COG1522 Lrp, Transcriptional regulators Transcription 17936834 Common rpsU 30S ribosomal protein S21 Atu3123 96 None None None 159185787 Common prp1 serine/threonine protein phosphatase I Atu3542 82 None None None 159185918 Pathogen - hypothetical protein Atu3852 1 None None None 159186049 Common - two-component response regulator Atu4162 105 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 15891073 Common - transcriptional regulator, LysR family Atu3889 187 COG0583 LysR, Transcriptional regulator Transcription 159185591 Common - hypothetical protein Atu3071 20 COG4297 COG4297, Uncharacterized protein containing double-stranded beta helix domain Function unknown 159185584 Common - ABC transporter, nucleotide binding/ATPase protein (peptide) Atu3053 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 17937457 Pathogen - hypothetical protein Atu3752 1 COG5570 COG5570, Uncharacterized small protein Function unknown 15891166 Common ald threonine aldolase Atu3785 87 COG2008 GLY1, Threonine aldolase Amino acid transport and metabolism 159185990 Common arcA arginase Atu4007 143 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 159186197 Common - transcriptional regulator, RpiR family Atu4514 95 COG1737 RpiR, Transcriptional regulators Transcription 159186062 Common - transcriptional regulator, AraC family Atu4204 55 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 15891577 Common - malic enzyme Atu3356 214 COG0281 SfcA, Malic enzyme Energy production and conversion 15891366 Common xylG ABC transporter, nucleotide binding/ATPase protein (xylose) Atu3574 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 15890705 Common - hypothetical protein Atu4276 115 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 15890960 Common tnp IS3 family transposase Atu4009 138 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 159186193 Common - hypothetical protein Atu4499 35 COG3683 COG3683, ABC-type uncharacterized transport system, periplasmic component General function prediction only 15890178 Common bme4 acetyltransferase Atu4814 129 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 15891498 Common - ABC transporter, nucleotide binding/ATPase protein (oligopeptide) Atu3437 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15890971 Common bioB biotin synthetase Atu3997 185 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 159186086 Common - ABC transporter, substrate binding protein (oligopeptide) Atu4259 213 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 159185820 Common - transporter Atu3610 44 COG3703 ChaC, Uncharacterized protein involved in cation transport Inorganic ion transport and metabolism 15890397 Common - transcriptional regulator, LysR family Atu4591 168 COG0583 LysR, Transcriptional regulator Transcription 15890760 Common soxA sarcosine oxidase alpha subunit Atu4222 182 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 159186074 Common - ABC transporter, substrate binding protein (amino acid) Atu4233 142 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 15891700 Common - hydroxypyruvate reductase Atu3232 86 COG2379 GckA, Putative glycerate kinase Carbohydrate transport and metabolism 17937761 Pathogen - hypothetical protein Atu4065 1 None None None 159186235 Common - probable transmembrane transport protein Atu4589 54 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 159186176 Common sitB ABC transporter, nucleotide binding/ATPase protein (iron) Atu4470 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 159186211 Common pobR transcriptional regulator, AraC family Atu4545 93 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 159186328 Common hemL glutamate-1-semialdehyde 2,1-aminomutase Atu4802 235 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 159185665 Common - hypothetical protein Atu3265 91 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 15891546 Common pfrI sigma factor Atu3387 75 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 159185891 Common - hypothetical protein Atu3766 65 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 159186305 Common - putative fructose transport system kinase Atu4749 45 COG1072 CoaA, Panthothenate kinase Coenzyme metabolism 15891759 Common - ABC transporter, nucleotide binding/ATPase protein (sorbitol/mannitol) Atu3170 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 159186257 Common - carbohydrate kinase Atu4649 142 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 15891168 Common gltD glutamate synthase subunit beta Atu3783 190 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 15891773 Common - ABC transporter, membrane spanning protein Atu3156 122 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 159186336 Common - transcriptional regulator, IclR family Atu4824 47 COG1414 IclR, Transcriptional regulator Transcription 15890523 Common - hypothetical protein Atu4461 32 COG3668 ParE, Plasmid stabilization system protein General function prediction only 159186243 Common rffB dTDP-D-glucose-4,6-dehydratase Atu4617 232 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 15891402 Common - hypothetical protein Atu3539 99 COG1403 McrA, Restriction endonuclease Defense mechanisms 159186323 Common bme13 transcriptional regulator, LuxR family Atu4795 117 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 15891823 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu3103 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 159185621 Common - 5-dehydro-4-deoxyglucarate dehydratase Atu3140 225 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 159186172 Common - transcriptional regulator, RpiR family Atu4454 10 COG1737 RpiR, Transcriptional regulators Transcription 15891188 Common pykA pyruvate kinase Atu3762 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 159185634 Common - ABC transporter, substrate binding protein (sorbitol/mannitol) Atu3165 80 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 159186095 Common nac transcriptional regulator, LysR family Atu4279 169 COG0583 LysR, Transcriptional regulator Transcription 159186317 Common afuB ABC transporter, membrane spanning protein (iron) Atu4785 206 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 15891688 Common - GGDEF family protein Atu3244 178 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 15890366 Common - transcriptional regulator, GntR family Atu4624 129 COG2186 FadR, Transcriptional regulators Transcription 159185601 Pathogen - hypothetical protein Atu3092 1 None None None 159185863 Common - hypothetical protein Atu3695 80 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 159185580 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu3047 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 159185741 Common - ABC transporter, membrane spanning protein (oligopeptide) Atu3435 221 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 17937568 Pathogen - hypothetical protein Atu3864 1 None None None 15891571 Common - monooxygenase Atu3362 69 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 15890966 Common - hypothetical protein Atu4002 82 COG2510 COG2510, Predicted membrane protein Function unknown 159185774 Common - hypothetical protein Atu3507 14 COG4991 COG4991, Uncharacterized protein with a bacterial SH3 domain homologue Function unknown 159185827 Common - hypothetical protein Atu3619 39 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 15890844 Common - hydroxybutyrate dehydrogenase Atu4131 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159185974 Common - transcriptional regulator, GntR family Atu3963 134 COG1802 GntR, Transcriptional regulators Transcription 15890265 Common exsA ABC transporter, nucleotide binding/ATPase protein Atu4728 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 15891443 Common - hypothetical protein Atu3494 8 COG2520 COG2520, Predicted methyltransferase General function prediction only 15890228 Common - hypothetical protein Atu4765 59 COG3046 COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase General function prediction only 15891684 Common minD cell division inhibitor Atu3248 140 COG2894 MinD, Septum formation inhibitor-activating ATPase Cell division and chromosome partitioning 15891581 Common - ABC transporter, substrate binding protein (sugar) Atu3352 71 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15890593 Pathogen norF NorF protein Atu8197 1 None None None 159186037 Pathogen - hypothetical protein Atu4133 1 None None None 159186279 Common - cytosine deaminase Atu4698 73 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 15890237 Common - hypothetical protein Atu4756 50 COG3608 COG3608, Predicted deacylase General function prediction only 159185577 Common - hypothetical protein Atu3040 32 COG3535 COG3535, Uncharacterized conserved protein Function unknown 159186161 Common - dipeptidase Atu4430 104 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 159185677 Common - thiamine-phosphate pyrophosphorylase Atu3289 199 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 17937354 Pathogen - hypothetical protein Atu3647 1 None None None 159185904 Common - transcriptional regulator, LysR family Atu3808 168 COG0583 LysR, Transcriptional regulator Transcription 15890951 Common - two component response regulator Atu4019 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 15891261 Common - siderophore biosynthesis protein Atu3684 63 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 159186080 Common - hypothetical protein Atu4248 2 None None None 15891085 Common - aldo-keto reductase Atu3877 184 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 15891018 Common - transcriptional regulator, LysR family Atu3951 168 COG0583 LysR, Transcriptional regulator Transcription 159186265 Common - ABC transporter, nucleotide binding/ATPase protein (oligopeptide) Atu4664 249 COG4172 COG4172, ABC-type uncharacterized transport system, duplicated ATPase component General function prediction only 159185955 Common - translation initiation inhibitor Atu3926 185 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 15891637 Common dctD two component response regulator for C4-dicarboxylate transport Atu3296 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 159185941 Common nrtB ABC transporter, membrane spanning protein (nitrate) Atu3904 174 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 15891641 Common alr alanine racemase Atu3292 199 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 159185852 Common - siderophore biosynthesis protein Atu3673 210 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 159185650 Common - hypothetical protein Atu3206 14 None None None 159185656 Common - transcriptional regulator, ROK family Atu3240 110 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 159186136 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu4370 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 159186250 Common - hypothetical protein Atu4631 63 COG1273 COG1273, Uncharacterized conserved protein Function unknown 159186219 Common - ABC transporter, membrane spanning protein (sugar) Atu4558 127 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15891796 Common - ABC transporter, membrane spanning protein (sugar) Atu3133 157 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15890223 Common - hypothetical protein Atu4770 74 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 159185842 Common - hypothetical protein Atu3650 18 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 15891161 Common kdpA potassium-transporting ATPase subunit A Atu3790 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 159185938 Common nasA nitrate reductase large subunit Atu3900 188 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 15891798 Common - ABC transporter, nucleotide binding/ATPase protein (sugar) Atu3131 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15890586 Common - hypothetical protein Atu4396 15 COG3154 COG3154, Putative lipid carrier protein Lipid metabolism 159185899 Common kdpB potassium-transporting ATPase subunit B Atu3789 232 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism