Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome NC_002937 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 46578514 Common potB polyamine ABC transporter, permease protein DVU0097 156 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 46579798 Common - hypothetical protein DVU1387 15 COG4310 COG4310, Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain General function prediction only 46579204 Common - methylated-DNA--protein-cysteine methyltransferase, DNA-binding domain protein DVU0791 72 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 46578779 Common pabB para-aminobenzoate synthase, component I DVU0363 221 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 46579967 Common - hypothetical protein DVU1556 20 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 46579137 Common - sodium/alanine symporter family protein DVU0724 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 46578626 Common - hypothetical protein DVU0209 4 None None None 46579135 Common - response regulator DVU0722 124 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 46580361 Nonpathogen - hypothetical protein DVU1952 1 COG4700 COG4700, Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats Function unknown 46580860 Nonpathogen - hypothetical protein DVU2456 1 None None None 46581238 Nonpathogen - hypothetical protein DVU2834 1 None None None 46578689 Common - hypothetical protein DVU0273 3 None None None 46578772 Common tag DNA-3-methyladenine glycosylase I DVU0356 132 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 46579439 Common uraA uracil permease DVU1026 128 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 46581070 Common - phosphate ABC transporter, permease protein, putative DVU2666 212 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 46580536 Nonpathogen - hypothetical protein DVU2131 2 COG3613 COG3613, Nucleoside 2-deoxyribosyltransferase Nucleotide transport and metabolism 46581088 Nonpathogen - hypothetical protein DVU2684 5 None None None 46579921 Nonpathogen - hypothetical protein DVU1510 1 None None None 46579981 Common porB pyruvate ferredoxin oxidoreductase, beta subunit DVU1570 111 COG1013 PorB, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Energy production and conversion 46581158 Common qor quinone oxidoreductase DVU2754 193 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 46579805 Nonpathogen - hypothetical protein DVU1394 1 None None None 46580686 Common - sensor histidine kinase/response regulator DVU2281 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46578682 Nonpathogen - hypothetical protein DVU0266 3 None None None 46580336 Common ileS isoleucyl-tRNA synthetase DVU1927 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 46580197 Common - nuclease domain protein DVU1787 18 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 46580665 Common rrmJ ribosomal RNA large subunit methyltransferase J DVU2260 138 COG0293 FtsJ, 23S rRNA methylase Translation, ribosomal structure and biogenesis 46581555 Nonpathogen - hypothetical protein DVU3153 1 None None None 46580566 Nonpathogen - hypothetical protein DVU2161 1 None None None 46579497 Common pstB-1 phosphate ABC transporter, ATP-binding protein DVU1084 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 46581533 Common - transcriptional regulator, putative DVU3131 69 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 46581525 Nonpathogen - hypothetical protein DVU3122 1 None None None 46579102 Nonpathogen - hypothetical protein DVU0688 1 None None None 46579724 Common rplN 50S ribosomal protein L14 DVU1313 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 46578767 Common - cytidine 5'monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis protein DVU0351 32 COG3980 spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase Cell envelope biogenesis, outer membrane 46580171 Nonpathogen - hypothetical protein DVU1761 1 None None None 46579937 Nonpathogen - hypothetical protein DVU1526 1 None None None 46581146 Common livM high-affinity branched chain amino acid ABC transporter, permease protein DVU2742 151 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 46578976 Common - ISD1, transposase OrfA DVU0562 54 None None None 46580321 Common - conserved hypothetical protein TIGR00150 DVU1912 171 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 46579167 Nonpathogen - hypothetical protein DVU0754 1 None None None 46581229 Common - pyruvate formate-lyase 1 activating enzyme, putative DVU2825 56 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 46579496 Common phoB phosphate regulon transcriptional regulator PhoB DVU1083 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 46579745 Common tig trigger factor DVU1334 208 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 46578579 Common carB carbamoyl-phosphate synthase, large subunit DVU0162 236 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 46579271 Common - lipoprotein, putative DVU0858 2 None None None 46579144 Nonpathogen - hypothetical protein DVU0731 2 COG4285 COG4285, Uncharacterized conserved protein Function unknown 46580359 Common - indolepyruvate ferredoxin oxidoreductase, beta subunit, putative DVU1950 54 COG1014 PorG, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit Energy production and conversion 46579211 Nonpathogen - hypothetical protein DVU0798 1 None None None 46579646 Nonpathogen - hypothetical protein DVU1235 1 None None None 46579170 Nonpathogen - hypothetical protein DVU0757 1 None None None 46579019 Nonpathogen - hypothetical protein DVU0605 1 None None None 46581601 Common - conserved hypothetical protein TIGR00103 DVU3199 186 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 46579712 Nonpathogen - hypothetical protein DVU1301 1 None None None 46580626 Nonpathogen - hypothetical protein DVU2221 1 None None None 46581623 Common - sensor histidine kinase DVU3221 220 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46579373 Nonpathogen - hypothetical protein DVU0960 1 None None None 46581719 Common putA proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase DVU3319 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 46580549 Common gap-2 glyceraldehyde 3-phosphate dehydrogenase DVU2144 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 46580954 Nonpathogen - hypothetical protein DVU2550 1 None None None 46580929 Common hynB-2 periplasmic [NiFe] hydrogenase, small subunit, isozyme 2 DVU2525 79 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 46578740 Nonpathogen - hypothetical protein DVU0324 1 None None None 46578690 Nonpathogen - hypothetical protein DVU0274 1 None None None 46580372 Nonpathogen - hypothetical protein DVU1963 1 None None None 46581704 Common - ATP-dependent protease La, truncation DVU3303 235 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 46578467 Common motA-1 chemotaxis protein MotA DVU0050 108 COG1291 MotA, Flagellar motor component Cell motility and secretion 46580232 Common - glutamate synthase, amidotransferase subunit, putative DVU1822 113 COG0067 GltB, Glutamate synthase domain 1 Amino acid transport and metabolism 46581745 Nonpathogen - hypothetical protein DVU3344 3 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 46580778 Common - outer membrane protein, OMP85 family DVU2373 158 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 46578427 Common - TRAP transporter, DctQ subunit DVU0010 60 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 46581055 Nonpathogen - hypothetical protein DVU2651 1 None None None 46580178 Common - GTP-binding protein DVU1768 191 COG1160 COG1160, Predicted GTPases General function prediction only 46580373 Common - transcriptional regulator, rrf2 protein, putative DVU1964 178 COG1959 COG1959, Predicted transcriptional regulator Transcription 46578472 Common ispH hydroxymethylbutenyl pyrophosphate reductase DVU0055 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 46580130 Nonpathogen - hypothetical protein DVU1720 1 None None None 46578495 Common - hypothetical protein DVU0078 36 COG4095 COG4095, Uncharacterized conserved protein Function unknown 46580721 Common topB DNA topoisomerase III DVU2316 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 46579336 Common - endoribonuclease, L-PSP family DVU0923 67 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 46581081 Common - sensor histidine kinase/response regulator DVU2677 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46580889 Nonpathogen - hypothetical protein DVU2485 4 None None None 46580126 Nonpathogen - hypothetical protein DVU1716 1 None None None 46581422 Common - radical SAM/B12 binding domain protein DVU3019 129 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 46581631 Common fliA RNA polymerase sigma factor for flagellar operon FliA DVU3229 215 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 46580583 Common - ISDvu2, transposase OrfB DVU2178 84 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 46580905 Common - cell division protein FtsQ, putative DVU2501 45 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 46579575 Common amiF formamidase DVU1164 106 COG0388 COG0388, Predicted amidohydrolase General function prediction only 46580495 Common - EF hand domain protein DVU2090 4 None None None 46579990 Common cysS cysteinyl-tRNA synthetase DVU1579 242 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 46580151 Nonpathogen - hypothetical protein DVU1741 2 None None None 46581595 Common - DNA-binding domain, excisionase family DVU3193 68 COG1910 COG1910, Periplasmic molybdate-binding protein/domain Inorganic ion transport and metabolism 46581124 Common - hypothetical protein DVU2720 2 None None None 46581469 Common - DNA-binding protein DVU3066 102 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 46579331 Common atpB ATP synthase F0, A subunit DVU0918 168 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 46581009 Nonpathogen - hypothetical protein DVU2605 1 None None None 46580713 Common - conserved hypothetical protein TIGR00022 DVU2308 30 COG2731 EbgC, Beta-galactosidase, beta subunit Carbohydrate transport and metabolism 46579154 Common - hypothetical protein DVU0741 2 None None None 46579564 Nonpathogen - hypothetical protein DVU1153 1 None None None 46579179 Common - transporter, putative DVU0766 9 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 46579540 Nonpathogen - hypothetical protein DVU1127 1 None None None 46579223 Common - hypothetical protein DVU0810 14 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 46580869 Nonpathogen - hypothetical protein DVU2465 1 None None None 46581732 Common - heavy metal translocating P-type ATPase DVU3332 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 46580553 Common - CBS/transporter associated domain protein DVU2148 219 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 46581464 Common - sensory box histidine kinase DVU3061 221 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 46579021 Common ahcY S-adenosyl-L-homocysteine hydrolase DVU0607 176 COG0499 SAM1, S-adenosylhomocysteine hydrolase Coenzyme metabolism 46580258 Common pcm protein-L-isoaspartate O-methyltransferase DVU1849 158 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 46578909 Common - aminotransferase, class V DVU0494 157 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 46579181 Common murI glutamate racemase DVU0768 190 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 46579094 Common - sensory box histidine kinase DVU0680 218 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46580613 Nonpathogen - hypothetical protein DVU2208 1 None None None 46579056 Common - hydrolase, alpha/beta fold family DVU0642 153 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 46580858 Nonpathogen - hypothetical protein DVU2454 1 None None None 46579869 Common - chemotaxis protein CheZ, putative DVU1458 15 COG3143 CheZ, Chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46579364 Common - molybdopterin biosynthesis MoeA protein, putative DVU0951 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 46579622 Common rpmB 50S ribosomal protein L28 DVU1211 111 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 46581346 Common purB adenylosuccinate lyase DVU2942 237 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 46579313 Common gmk guanylate kinase DVU0900 213 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 46581451 Common asd aspartate-semialdehyde dehydrogenase DVU3048 236 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 46580675 Nonpathogen - hypothetical protein DVU2270 1 None None None 46580939 Common rplT 50S ribosomal protein L20 DVU2535 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 46579079 Common - nitrogen fixation protein nifU DVU0665 174 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 46579010 Common lytR DNA-binding response regulator LytR DVU0596 201 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 46581683 Common - ADP-ribosylglycohydrolase family protein DVU3282 29 COG1397 DraG, ADP-ribosylglycohydrolase Posttranslational modification, protein turnover, chaperones 46578759 Common - HPCH/HPAI aldolase family protein DVU0343 74 COG3836 HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Carbohydrate transport and metabolism 46579751 Common - transcriptional regulator, Fur family DVU1340 51 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 46578670 Nonpathogen - hypothetical protein DVU0254 1 None None None 46581696 Common - hemolysin III DVU3295 119 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 46580820 Nonpathogen - hypothetical protein DVU2415 3 None None None 46579446 Common - competence/damage-inducible protein CinA protein, truncation DVU1033 191 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 46579850 Nonpathogen - hypothetical protein DVU1439 1 None None None 46578787 Common - hypothetical protein DVU0371 5 None None None 46581584 Common dcrA methyl-accepting chemotaxis protein DcrA DVU3182 152 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46578505 Common panF sodium/panthothenate symporter DVU0088 169 COG4145 PanF, Na+/panthothenate symporter Coenzyme metabolism 46579046 Common - cupin family protein DVU0632 45 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 46579391 Common - ABC transporter, periplasmic substrate-binding protein, putative DVU0978 61 COG2998 TupB, ABC-type tungstate transport system, permease component Coenzyme metabolism 46580966 Nonpathogen - acyl carrier protein, putative DVU2562 3 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 46581191 Nonpathogen - hypothetical protein DVU2787 16 None None None 46578823 Common - rare lipoprotein A family protein DVU0407 136 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 46579588 Nonpathogen - hypothetical protein DVU1177 3 None None None 46579242 Common ptsI phosphoenolpyruvate-protein phosphotransferase DVU0829 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 46578722 Common - hypothetical protein DVU0306 2 None None None 46578914 Common - conserved hypothetical protein TIGR00149 DVU0499 138 COG0432 COG0432, Uncharacterized conserved protein Function unknown 46580480 Common - ParA family protein DVU2075 197 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 46579568 Common - sensory box histidine kinase DVU1157 221 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46581129 Nonpathogen - hypothetical protein DVU2725 1 None None None 46579238 Common secA preprotein translocase subunit SecA DVU0825 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 46579617 Common fabG 3-oxoacyl-(acyl-carrier-protein) reductase DVU1206 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 46581090 Common - peptidase, S24 family DVU2686 45 COG2932 COG2932, Predicted transcriptional regulator Transcription 46581658 Common mutM formamidopyrimidine-DNA glycosylase DVU3256 178 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 46579997 Common - thioredoxin family protein DVU1586 124 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 46580726 Nonpathogen - hypothetical protein DVU2321 1 None None None 46581130 Nonpathogen - hypothetical protein DVU2726 1 None None None 46580753 Common dut deoxyuridine 5'-triphosphate nucleotidohydrolase DVU2348 176 COG0756 Dut, dUTPase Nucleotide transport and metabolism 46580931 Common - transcriptional regulator, putative DVU2527 33 COG4957 COG4957, Predicted transcriptional regulator Transcription 46580644 Common - glycosyl hydrolase, family 3 DVU2239 180 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 46581725 Nonpathogen - hypothetical protein DVU3325 1 None None None 46580208 Common - hypothetical protein DVU1798 39 COG3216 COG3216, Uncharacterized protein conserved in bacteria Function unknown 46580920 Nonpathogen - CBS domain protein DVU2516 5 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 46580023 Common - ACT domain protein DVU1612 38 COG4747 COG4747, ACT domain-containing protein General function prediction only 46581643 Common - hypothetical protein DVU3241 151 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 46579398 Nonpathogen - hypothetical protein DVU0985 1 None None None 46578735 Common - NAD-dependent epimerase/dehydratase family protein DVU0319 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 46580349 Common - anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative DVU1940 142 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 46580487 Common - flagellin, putative DVU2082 115 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 46581403 Nonpathogen - hypothetical protein DVU3000 1 None None None 46579501 Nonpathogen - hypothetical protein DVU1088 1 None None None 46580431 Common - hypothetical protein DVU2024 13 COG1106 COG1106, Predicted ATPases General function prediction only 46578594 Common modA molybdenum ABC transporter, periplasmic molybdenum-binding protein DVU0177 156 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 46578605 Nonpathogen - hypothetical protein DVU0188 1 None None None 46578600 Common - methyl-accepting chemotaxis protein DVU0183 144 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46580578 Nonpathogen - hypothetical protein DVU2173 1 None None None 46579600 Common - hypothetical protein DVU1189 107 COG0628 PerM, Predicted permease General function prediction only 46580288 Common - glycosyl transferase, group 1 family protein DVU1879 142 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46579454 Common tatC Sec-independent protein translocase TatC DVU1041 205 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 46579401 Common - carbohydrate kinase, PfkB family DVU0988 73 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 46581106 Nonpathogen - hypothetical protein DVU2702 1 None None None 46581564 Common - ABC transporter, periplasmic substrate-binding protein DVU3162 112 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 46579413 Common - peptidase, M24 family DVU1000 119 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 46581252 Common - tail fiber assembly protein, putative DVU2848 3 None None None 46579487 Nonpathogen rpmH ribosomal protein L34 DVU1074 1 None None None 46581260 Common - hypothetical protein DVU2856 13 COG3941 COG3941, Mu-like prophage protein General function prediction only 46580115 Common - type I restriction-modification enzyme, S subunit DVU1705 85 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 46580398 Nonpathogen - hypothetical protein DVU1989 1 None None None 46581395 Nonpathogen - glycosyl transferase, group 2 family protein DVU2992 2 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 46579082 Common - methyl-accepting chemotaxis protein DVU0668 107 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46580109 Nonpathogen - hypothetical protein DVU1699 1 None None None 46579543 Nonpathogen - DNA-binding protein DVU1130 1 None None None 46580971 Common - hypothetical protein DVU2567 21 COG1378 COG1378, Predicted transcriptional regulators Transcription 46581633 Common - flagellar biosynthesis protein FlhF, putative DVU3231 29 COG1419 FlhF, Flagellar GTP-binding protein Cell motility and secretion 46580762 Common - HD domain protein DVU2357 62 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 46579710 Common rpsG 30S ribosomal protein S7 DVU1299 249 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 46580283 Common clpB ATP-dependent Clp protease, ATP-binding subunit ClpB DVU1874 218 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 46580056 Common arsC arsenate reductase DVU1646 134 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 46581000 Common - hypothetical protein DVU2596 8 None None None 46580314 Nonpathogen - hypothetical protein DVU1905 1 None None None 46580843 Common - efflux transporter, RND family, MFP subunit DVU2439 164 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 46581353 Common - hypothetical protein DVU2949 53 COG3169 COG3169, Uncharacterized protein conserved in bacteria Function unknown 46581016 Nonpathogen - hypothetical protein DVU2612 2 None None None 46579168 Common - sensor histidine kinase, putative DVU0755 165 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46579143 Common - hypothetical protein DVU0730 17 None None None 46578853 Common - efflux transporter, RND family, MFP subunit DVU0437 154 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 46579833 Common - OmpA family protein DVU1422 163 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 46580926 Nonpathogen - hypothetical protein DVU2522 3 None None None 46581540 Nonpathogen - hypothetical protein DVU3138 1 None None None 46579118 Common dctM TRAP transporter, DctM subunit DVU0705 133 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 46579835 Common gcvPB glycine dehydrogenase subunit 2 DVU1424 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 46579310 Common - RNA modification enzyme, MiaB-family DVU0897 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 46581544 Common - sigma-54 dependent transcriptional regulator DVU3142 172 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 46580064 Common - site-specific recombinase, phage integrase family DVU1654 231 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 46580469 Common - oxidoreductase, 2-nitropropane dioxygenase family DVU2064 134 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 46581764 Common sun sun protein DVU3363 197 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 46579739 Common rpsD 30S ribosomal protein S4 DVU1328 233 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 46581045 Common - lipoprotein, putative DVU2641 2 None None None 46580978 Nonpathogen - ferrous ion transport protein, putative DVU2574 1 COG1918 FeoA, Fe2+ transport system protein A Inorganic ion transport and metabolism 46581549 Common - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase DVU3147 109 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 46578460 Common fliQ flagellar biosynthetic protein FliQ DVU0043 103 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 46580635 Common deoD purine nucleoside phosphorylase DVU2230 128 COG0005 Pnp, Purine nucleoside phosphorylase Nucleotide transport and metabolism 46581322 Nonpathogen - hypothetical protein DVU2918 1 None None None 46579702 Nonpathogen - hypothetical protein DVU1291 7 None None None 46578650 Nonpathogen - hypothetical protein DVU0233 1 None None None 46579592 Common - response regulator DVU1181 224 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 46581182 Nonpathogen - hypothetical protein DVU2778 1 None None None 46578536 Common - sensor histidine kinase DVU0119 223 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46581249 Common - HIT family protein DVU2845 155 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 46579957 Nonpathogen - hypothetical protein DVU1546 1 None None None 46578894 Common - Ser/Thr protein phosphatase family DVU0478 73 COG0622 COG0622, Predicted phosphoesterase General function prediction only 46579461 Common ccmB cytochrome c-type biogenesis protein CcmB DVU1048 2 COG2386 CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 46580810 Common - alcohol dehydrogenase, iron-containing DVU2405 172 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 46578621 Nonpathogen - lipoprotein, putative DVU0204 1 None None None 46579691 Common - conserved hypothetical protein TIGR00159 DVU1280 67 COG1624 COG1624, Uncharacterized conserved protein Function unknown 46580328 Common - hydrogenase expression/formation protein, putative DVU1919 80 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 46578872 Common - DHH family protein DVU0456 34 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 46580794 Common - biopolymer transport protein, ExbD/TolR family DVU2389 128 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 46581501 Nonpathogen - hypothetical protein DVU3098 1 None None None 46580878 Nonpathogen - hypothetical protein DVU2474 1 None None None 46578749 Common - hypothetical protein DVU0333 4 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 46580773 Common fabZ beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ DVU2368 187 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 46581390 Nonpathogen - hypothetical protein DVU2987 1 None None None 46580009 Common - hypothetical protein DVU1598 52 COG1993 COG1993, Uncharacterized conserved protein Function unknown 46580672 Nonpathogen - hypothetical protein DVU2267 1 None None None 46580995 Nonpathogen - tail fiber assembly protein, putative DVU2591 1 None None None 46580079 Common rluB ribosomal large subunit pseudouridine synthase B DVU1669 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 46580021 Common nadE glutamine-dependent NAD+ synthetase DVU1610 207 COG0171 NadE, NAD synthase Coenzyme metabolism 46581397 Common - glycosyl transferase, group 2 family protein DVU2994 108 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 46580047 Common ppaC putative manganese-dependent inorganic pyrophosphatase DVU1636 56 COG1227 PPX1, Inorganic pyrophosphatase/exopolyphosphatase Energy production and conversion 46579460 Common ccmC cytochrome c-type biogenesis protein CcmC DVU1047 171 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 46578844 Nonpathogen - hypothetical protein DVU0428 1 COG1359 COG1359, Uncharacterized conserved protein Function unknown 46579943 Common coaD pantetheine-phosphate adenylyltransferase DVU1532 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 46580984 Common - response regulator DVU2580 111 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46580505 Common - universal stress protein family DVU2100 108 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 46581175 Common - hypothetical protein DVU2771 34 COG4395 COG4395, Uncharacterized protein conserved in bacteria Function unknown 46578750 Common - D-alanine--D-alanine ligase DVU0334 213 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 46578587 Common - methyl-accepting chemotaxis protein DVU0170 99 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46581571 Common cbiG cobalamin biosynthesis protein CbiG DVU3169 91 COG2073 CbiG, Cobalamin biosynthesis protein CbiG Coenzyme metabolism 46580890 Common - acetyltransferase, GNAT family DVU2486 111 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 46579762 Common - membrane protein, MarC family DVU1351 156 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 46580816 Common - EF hand domain protein DVU2411 2 None None None 46579272 Common - hypothetical protein DVU0859 3 COG2881 COG2881, Uncharacterized protein conserved in archaea Function unknown 46578793 Common trxB-1 thioredoxin reductase DVU0377 247 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 46581214 Common - formate dehydrogenase formation protein FdhE, putative DVU2810 20 COG3058 FdhE, Uncharacterized protein involved in formate dehydrogenase formation Posttranslational modification, protein turnover, chaperones 46579516 Nonpathogen - baseplate assembly protein, putative DVU1103 1 None None None 46581184 Common - hypothetical protein DVU2780 47 COG1284 COG1284, Uncharacterized conserved protein Function unknown 46578655 Nonpathogen - hypothetical protein DVU0238 1 None None None 46580830 Common rarD rarD protein DVU2425 102 COG2962 RarD, Predicted permeases General function prediction only 46580344 Common - phosphonate ABC transporter, permease protein DVU1935 96 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 46580070 Common - undecaprenol kinase, putative DVU1660 197 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 46580275 Nonpathogen - hypothetical protein DVU1866 1 None None None 46578733 Nonpathogen - hypothetical protein DVU0317 1 None None None 46580203 Nonpathogen - hypothetical protein DVU1793 1 None None None 46579590 Common aor aldehyde:ferredoxin oxidoreductase, tungsten-containing DVU1179 56 COG2414 COG2414, Aldehyde:ferredoxin oxidoreductase Energy production and conversion 46578811 Common - HIT family protein DVU0395 232 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 46580548 Common fba fructose-1,6-bisphosphate aldolase, class II DVU2143 178 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 46581371 Common - sensor histidine kinase/response regulator DVU2968 202 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46580066 Common folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase DVU1656 194 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 46580354 Common - 2-oxoglutarate ferredoxin oxidoreductase subunit alpha DVU1945 131 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 46579632 Nonpathogen - hypothetical protein DVU1221 1 None None None 46579653 Common - vacJ lipoprotein, putative DVU1242 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 46578704 Nonpathogen - hypothetical protein DVU0288 1 None None None 46579284 Common pyrH uridylate kinase DVU0871 244 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 46578583 Common - oligopeptide/dipeptide ABC transporter, ATP-binding protein DVU0166 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 46578964 Common - high-affinity branched-chain amino acid ABC transporter, permease protein DVU0549 154 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 46581695 Common - aldehyde dehydrogenase (NADP) family protein DVU3294 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 46579561 Nonpathogen - hypothetical protein DVU1150 1 None None None 46581671 Common - sensory box histidine kinase/response regulator DVU3269 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46579349 Nonpathogen - hypothetical protein DVU0936 1 None None None 46580899 Common - thioesterase family protein DVU2495 50 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 46579257 Nonpathogen - hypothetical protein DVU0844 1 None None None 46581688 Nonpathogen - glycosyl transferase, group 2 family protein DVU3287 1 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 46578833 Common speA arginine decarboxylase DVU0417 121 COG1166 SpeA, Arginine decarboxylase (spermidine biosynthesis) Amino acid transport and metabolism 46578450 Common - isochorismatase family protein DVU0033 137 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 46580571 Common - holin DVU2166 5 COG4824 COG4824, Phage-related holin (Lysis protein) General function prediction only 46580942 Common thrS threonyl-tRNA synthetase DVU2538 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 46579875 Common - heptosyltransferase family protein DVU1464 21 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 46581339 Common gpm phosphoglycerate mutase DVU2935 132 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 46580018 Common - hypothetical protein DVU1607 3 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 46579915 Common - terminase, small subunit DVU1504 19 COG3747 COG3747, Phage terminase, small subunit DNA replication, recombination, and repair 46579619 Common plsX fatty acid/phospholipid synthesis protein DVU1208 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 46578958 Common - hypothetical protein DVU0543 104 COG2855 COG2855, Predicted membrane protein Function unknown 46581503 Common - biopolymer transport protein, ExbD/TolR family DVU3100 140 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 46579157 Common - sigma-54 dependent transcriptional regulator/response regulator DVU0744 192 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 46581474 Common - oxidoreductase, FAD/iron-sulfur cluster-binding domain protein DVU3071 200 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 46578847 Nonpathogen - Ech hydrogenase, subunit EchD, putative DVU0431 11 COG0852 NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit Energy production and conversion 46578933 Common - hypothetical protein DVU0518 2 None None None 46579754 Common - cation ABC transporter, periplasmc-binding protein DVU1343 153 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 46579028 Nonpathogen - hypothetical protein DVU0614 1 None None None 46581177 Common - hypothetical protein DVU2773 52 COG1284 COG1284, Uncharacterized conserved protein Function unknown 46579183 Common - hypothetical protein DVU0770 10 COG0730 COG0730, Predicted permeases General function prediction only 46581221 Common - multidrug resistance protein DVU2817 127 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 46578547 Common - phosphoglycolate phosphatase, putative DVU0130 157 COG0546 Gph, Predicted phosphatases General function prediction only 46580380 Common - hypothetical protein DVU1971 27 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 46578920 Common truB tRNA pseudouridine synthase B DVU0505 244 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 46579841 Common - peptidase, M16 family DVU1430 202 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 46579302 Common - phosphonopyruvate decarboxylase-related protein DVU0889 51 COG3635 COG3635, Predicted phosphoglycerate mutase, AP superfamily Carbohydrate transport and metabolism 46581373 Common - acetyltransferase, GNAT family DVU2970 177 COG1042 COG1042, Acyl-CoA synthetase (NDP forming) Energy production and conversion 46581443 Nonpathogen - hypothetical protein DVU3040 1 None None None 46580739 Nonpathogen - hypothetical protein DVU2334 1 None None None 46580082 Common - hypothetical protein DVU1672 44 COG2121 COG2121, Uncharacterized protein conserved in bacteria Function unknown 46581297 Nonpathogen - flagellar basal-body rod protein, putative DVU2893 1 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 46581334 Nonpathogen - hypothetical protein DVU2930 1 None None None 46579354 Common - peptidase, M16 family DVU0941 80 COG1026 COG1026, Predicted Zn-dependent peptidases, insulinase-like General function prediction only 46579072 Common - heat shock protein, Hsp20 family DVU0658 38 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 46581445 Common - lipoprotein, putative DVU3042 2 None None None 46581267 Nonpathogen - hypothetical protein DVU2863 2 None None None 46578642 Nonpathogen - hypothetical protein DVU0225 1 None None None 46581052 Nonpathogen - hypothetical protein DVU2648 1 None None None 46581011 Nonpathogen - hypothetical protein DVU2607 1 None None None 46578487 Common - Ser/Thr protein phosphatase family protein DVU0070 61 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 46581155 Nonpathogen - hypothetical protein DVU2751 1 None None None 46580094 Common gcvT glycine cleavage system T protein DVU1684 179 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 46579527 Common - virion morphogenesis protein DVU1114 23 COG5005 COG5005, Mu-like prophage protein gpG General function prediction only 46581299 Nonpathogen - hypothetical protein DVU2895 1 None None None 46580615 Common - TPR domain protein DVU2210 57 COG1944 COG1944, Uncharacterized conserved protein Function unknown 46579533 Common - hypothetical protein DVU1120 29 COG4383 COG4383, Mu-like prophage protein gp29 Function unknown 46580835 Common - RNA-binding protein DVU2430 66 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 46579037 Nonpathogen - hypothetical protein DVU0623 1 None None None 46581143 Common - pyruvate phosphate dikinase, PEP/pyruvate binding domain protein DVU2739 148 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 46579030 Nonpathogen - hypothetical protein DVU0616 1 None None None 46578603 Nonpathogen - hypothetical protein DVU0186 11 COG2043 COG2043, Uncharacterized protein conserved in archaea Function unknown 46580240 Nonpathogen - hypothetical protein DVU1830 1 None None None 46580249 Common - metalloendopeptidase, putative, glycoprotease family DVU1840 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 46579665 Common - hypothetical protein DVU1254 167 COG1576 COG1576, Uncharacterized conserved protein Function unknown 46581028 Common - hypothetical protein DVU2624 4 None None None 46579384 Common - molybdenum cofactor biosynthesis protein DVU0971 145 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 46581480 Common - AhpC/TSA family protein DVU3077 193 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 46579714 Common rplC 50S ribosomal protein L3 DVU1303 228 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 46579471 Common cbiM cobalt transport protein CbiM DVU1058 18 COG0310 CbiM, ABC-type Co2+ transport system, permease component Inorganic ion transport and metabolism 46580568 Nonpathogen - hypothetical protein DVU2163 1 None None None 46578886 Common trpB-2 tryptophan synthase subunit beta DVU0470 224 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 46581487 Common - transcriptional regulator, putative DVU3084 33 COG4957 COG4957, Predicted transcriptional regulator Transcription 46578610 Nonpathogen - hypothetical protein DVU0193 2 None None None 46579693 Common glmM phosphoglucosamine mutase DVU1282 241 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 46580477 Common cheA-3 chemotaxis protein CheA DVU2072 154 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 46579839 Common pgm phosphoglucomutase DVU1428 229 COG0033 Pgm, Phosphoglucomutase Carbohydrate transport and metabolism 46580424 Common - GGDEF domain protein DVU2016 174 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 46580799 Common - sigma-54 dependent transcriptional regulator/response regulator DVU2394 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46581569 Common - heme biosynthesis protein, putative DVU3167 52 COG1522 Lrp, Transcriptional regulators Transcription 46578493 Common - glycosyl transferase, group 2 family protein DVU0076 181 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 46581061 Common - 6-pyruvoyl tetrahydrobiopterin synthase, putative DVU2657 144 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 46579412 Common - thio:disulfide interchange protein, putative DVU0999 105 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 46578925 Common nusA transcription elongation factor NusA DVU0510 216 COG0195 NusA, Transcription elongation factor Transcription 46579375 Nonpathogen - hypothetical protein DVU0962 1 None None None 46580952 Common acpD acyl carrier protein phosphodiesterase DVU2548 96 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 46578551 Common - glycosyl transferase, group 2 family protein DVU0134 162 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 46580294 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B DVU1885 213 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 46580796 Nonpathogen - hypothetical protein DVU2391 1 None None None 46578560 Nonpathogen - hypothetical protein DVU0143 8 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 46580882 Common pstC phosphate ABC transporter, permease protein PstC DVU2478 233 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 46580825 Common - hypothetical protein DVU2420 6 None None None 46580652 Common - antioxidant, AhpC/Tsa family DVU2247 220 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 46578991 Common - formate dehydrogenase formation protein FdhE, putative DVU0577 44 COG3058 FdhE, Uncharacterized protein involved in formate dehydrogenase formation Posttranslational modification, protein turnover, chaperones 46580002 Nonpathogen - hypothetical protein DVU1591 1 None None None 46579265 Common - extracellular solute-binding protein, putative DVU0852 38 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46578712 Common - peptidase, M24 family DVU0296 243 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 46579327 Common cobS cobalamin-5-phosphate synthase DVU0914 51 COG0368 CobS, Cobalamin-5-phosphate synthase Coenzyme metabolism 46579342 Common obgE GTPase ObgE DVU0929 249 COG0536 Obg, Predicted GTPase General function prediction only 46581597 Common - lipoprotein, putative DVU3195 8 COG3608 COG3608, Predicted deacylase General function prediction only 46578565 Nonpathogen - lipoprotein, putative DVU0148 2 None None None 46579883 Common - ATP-dependent protease, putative DVU1472 137 COG1067 LonB, Predicted ATP-dependent protease Posttranslational modification, protein turnover, chaperones 46580217 Common nadC nicotinate-nucleotide pyrophosphorylase DVU1807 204 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 46578433 Nonpathogen - hypothetical protein DVU0016 1 None None None 46579909 Common - hypothetical protein DVU1498 11 None None None 46580304 Common - major facilitator superfamily protein DVU1895 229 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 46578917 Nonpathogen - hypothetical protein DVU0502 1 None None None 46581380 Nonpathogen - hypothetical protein DVU2977 1 None None None 46580989 Common - methyl-accepting chemotaxis protein DVU2585 104 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46580659 Common thyX FAD-dependent thymidylate synthase DVU2254 64 COG1351 THY1, Predicted alternative thymidylate synthase Nucleotide transport and metabolism 46580593 Common - primase, putative DVU2188 81 COG3378 COG3378, Predicted ATPase General function prediction only 46578983 Common - sigma-54 dependent transcriptional regulator DVU0569 171 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 46579577 Nonpathogen - hypothetical protein DVU1166 1 None None None 46581363 Common - sigma-54 dependent transcriptional regulator DVU2960 177 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 46579845 Common - hypothetical protein DVU1434 2 None None None 46581777 Common - sulfatase family protein DVU3376 65 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 46580211 Common - hypothetical protein DVU1801 4 None None None 46578998 Common - transposase, putative DVU0584 8 None None None 46578725 Common - transcriptional regulator, LysR family DVU0309 155 COG0583 LysR, Transcriptional regulator Transcription 46580783 Common - transcriptional regulator, AraC family DVU2378 13 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 46579908 Common - head-tail adaptor, putative DVU1497 23 COG5614 COG5614, Bacteriophage head-tail adaptor General function prediction only 46581513 Common - hypothetical protein DVU3110 212 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 46579818 Common - radical SAM domain protein DVU1407 14 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 46581170 Nonpathogen - hypothetical protein DVU2766 1 None None None 46580403 Nonpathogen - hypothetical protein DVU1994 1 None None None 46581573 Nonpathogen - cytochrome c3 DVU3171 2 None None None 46579296 Nonpathogen - glutaredoxin, putative DVU0883 13 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 46581770 Common - hypothetical protein DVU3369 42 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 46580272 Common - flagellar synthesis regulator FleN, putative DVU1863 122 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 46581619 Nonpathogen - hypothetical protein DVU3217 1 None None None 46580765 Common - oxidoreductase, FAD/NAD-binding family DVU2360 126 COG4097 COG4097, Predicted ferric reductase Inorganic ion transport and metabolism 46580260 Common - peptidase, M23/M37 family DVU1851 190 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 46579559 Common - alginate o-acetyltransferase AlgI, putative DVU1147 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 46579535 Common - portal protein, putative DVU1122 21 COG4373 COG4373, Mu-like prophage FluMu protein gp28 General function prediction only 46581240 Common - hypothetical protein DVU2836 3 None None None 46579948 Common - lipoprotein, putative DVU1537 6 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 46581590 Common - NLP/P60 family protein DVU3188 128 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 46581612 Common thrC threonine synthase DVU3210 179 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 46579772 Common lpxB lipid A disaccharide synthase DVU1361 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 46580749 Nonpathogen - hypothetical protein DVU2344 1 None None None 46580033 Common purQ phosphoribosylformylglycinamidine synthase I DVU1622 232 COG0047 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain Nucleotide transport and metabolism 46579709 Common rpsL 30S ribosomal protein S12 DVU1298 245 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 46581389 Common pspC phage shock protein C DVU2986 17 COG1983 PspC, Putative stress-responsive transcriptional regulator Transcription / Signal transduction mechanisms 46581673 Common cydA cytochrome d ubiquinol oxidase, subunit I DVU3271 167 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 46580117 Common - hypothetical protein DVU1707 2 COG3943 COG3943, Virulence protein General function prediction only 46579009 Nonpathogen - hypothetical protein DVU0595 6 COG1416 COG1416, Uncharacterized conserved protein Function unknown 46581219 Common - outer membrane efflux protein DVU2815 122 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 46578719 Nonpathogen - hypothetical protein DVU0303 1 None None None 46581086 Common - DedA family protein DVU2682 155 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 46579427 Nonpathogen - hypothetical protein DVU1014 1 None None None 46580740 Common - hypothetical protein DVU2335 67 COG2861 COG2861, Uncharacterized protein conserved in bacteria Function unknown 46581114 Common - hypothetical protein DVU2710 20 COG4388 COG4388, Mu-like prophage I protein General function prediction only 46579128 Common - branched-chain amino acid ABC transporter, ATP binding protein DVU0715 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 46579556 Nonpathogen - hypothetical protein DVU1143 1 None None None 46578577 Common - carbohydrate isomerase, KpsF/GutQ family DVU0160 167 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 46579126 Common - branched-chain amino acid ABC transporter, permease protein DVU0713 152 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 46580156 Common - C-5 cytosine-specific DNA methylase family protein DVU1746 129 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 46578471 Common - dihydrouridine synthase family protein DVU0054 205 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 46579060 Common cobI precorrin-2 C20-methyltransferase DVU0646 136 COG2243 CobF, Precorrin-2 methylase Coenzyme metabolism 46581287 Common selA selenocysteine synthase DVU2883 73 COG1921 SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] Amino acid transport and metabolism 46579573 Nonpathogen - hypothetical protein DVU1162 1 None None None 46580031 Nonpathogen - hypothetical protein DVU1620 1 None None None 46580269 Common lnt apolipoprotein N-acyltransferase DVU1860 169 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 46579448 Common - glucokinase, putative DVU1035 15 COG0837 Glk, Glucokinase Carbohydrate transport and metabolism 46579726 Common rplE 50S ribosomal protein L5 DVU1315 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 46580470 Nonpathogen - hypothetical protein DVU2065 1 None None None 46580230 Common yajC preprotein translocase, YajC subunit DVU1820 170 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 46578978 Common - ISDvu4, transposase, truncation DVU0564 16 None None None 46579888 Nonpathogen - hypothetical protein DVU1477 1 None None None 46581553 Common - MiaB-like tRNA modifying enzyme YliG, TIGR01125 DVU3151 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 46581665 Common sdhB succinate dehydrogenase iron-sulfur subunit DVU3263 207 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 46580745 Common - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family DVU2340 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 46581068 Common - phosphate ABC transporter, ATP-binding protein, putative DVU2664 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 46579596 Nonpathogen - colicin V production family protein DVU1185 1 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 46579441 Common cmk cytidylate kinase DVU1028 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 46581494 Common - hypothetical protein DVU3091 14 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 46578528 Common - response regulator DVU0111 219 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 46578980 Common - GAF domain protein DVU0566 36 COG2203 FhlA, FOG: GAF domain Signal transduction mechanisms 46581714 Common - peptidase, U32 family DVU3314 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 46579111 Common - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase DVU0697 165 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 46581424 Common - HDIG domain protein DVU3021 63 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 46581151 Common - hypothetical protein DVU2747 4 None None None 46580464 Common - glycosyl transferase, group 2 family protein DVU2059 22 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 46579089 Common - amino acid ABC transporter, periplasmic amino acid-binding protein DVU0675 162 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46580914 Common - penicillin-binding protein DVU2510 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 46580525 Nonpathogen - hypothetical protein DVU2120 1 None None None 46580581 Nonpathogen - hypothetical protein DVU2176 1 None None None 46581053 Nonpathogen - hypothetical protein DVU2649 1 None None None 46580301 Common - glycosyl transferase, group 2 family protein DVU1892 44 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 46580520 Nonpathogen - hypothetical protein DVU2115 1 None None None 46579777 Common - lipoprotein, putative DVU1366 2 None None None 46579080 Common - HD domain protein DVU0666 122 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 46580244 Common - biotin--acetyl-CoA-carboxylase ligase DVU1835 159 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 46579562 Nonpathogen - hypothetical protein DVU1151 1 None None None 46580442 Common - plasmid stabilization system family protein DVU2035 26 COG3668 ParE, Plasmid stabilization system protein General function prediction only 46581734 Common - sigma-54 dependent DNA-binding response regulator DVU3334 216 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46580723 Common - rubrerythrin, putative DVU2318 80 COG1592 COG1592, Rubrerythrin Energy production and conversion 46581431 Common - iron-sulfur cluster-binding protein DVU3028 183 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 46578418 Common dnaA-1 chromosomal replication initiator protein DnaA DVU0001 212 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 46580804 Common - hydrogenase, putative DVU2399 148 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 46580907 Common murC UDP-N-acetylmuramate--alanine ligase DVU2503 208 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 46579334 Common - 5-nitroimidazole antibiotic resistance protein, putative DVU0921 14 COG3467 COG3467, Predicted flavin-nucleotide-binding protein General function prediction only 46579602 Common - ATP-dependent protease La, putative DVU1191 213 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 46580308 Common - DNA repair protein RecO, putative DVU1899 4 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 46580160 Nonpathogen - hypothetical protein DVU1750 1 None None None 46579670 Nonpathogen - hypothetical protein DVU1259 1 None None None 46581377 Nonpathogen - hypothetical protein DVU2974 1 None None None 46581122 Nonpathogen - hypothetical protein DVU2718 1 None None None 46579225 Common grpE heat shock protein GrpE DVU0812 212 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 46580792 Common - ABC transporter, ATP-binding protein DVU2387 249 COG4172 COG4172, ABC-type uncharacterized transport system, duplicated ATPase component General function prediction only 46580132 Nonpathogen - hypothetical protein DVU1722 1 None None None 46581739 Common kdpA potassium-transporting ATPase subunit A DVU3339 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 46580588 Nonpathogen - hypothetical protein DVU2183 1 None None None 46580054 Common - permease, putative DVU1644 75 COG0701 COG0701, Predicted permeases General function prediction only 46580711 Common - phosphate transporter family protein DVU2306 167 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 46579978 Nonpathogen - hypothetical protein DVU1567 1 None None None 46578906 Common - HDIG domain protein DVU0491 124 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 46581254 Common - tail protein, putative DVU2850 19 COG3778 COG3778, Uncharacterized protein conserved in bacteria Function unknown 46581756 Common - SPFH domain/Band 7 family protein DVU3355 208 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 46579236 Common argJ bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein DVU0823 167 COG1364 ArgJ, N-acetylglutamate synthase (N-acetylornithine aminotransferase) Amino acid transport and metabolism 46581310 Common umuC umuC protein DVU2906 162 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 46581466 Common mviN-2 integral membrane protein MviN DVU3063 178 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 46581337 Common - response regulator/sensory box/HDIG domain protein DVU2933 207 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 46580370 Common cheW-3 chemotaxis protein CheW DVU1961 132 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 46581625 Common aspB aspartate aminotransferase DVU3223 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 46578509 Common - sensory box histidine kinase DVU0092 220 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 46578765 Common - NeuB family protein DVU0349 78 COG2089 SpsE, Sialic acid synthase Cell envelope biogenesis, outer membrane 46580426 Common - hypothetical protein DVU2019 29 COG4930 COG4930, Predicted ATP-dependent Lon-type protease Posttranslational modification, protein turnover, chaperones 46581522 Common - AMP-binding enzyme family protein DVU3119 221 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 46579792 Nonpathogen - hypothetical protein DVU1381 1 None None None 46581496 Common rdl rubredoxin-like protein DVU3093 103 COG1773 COG1773, Rubredoxin Energy production and conversion 46580769 Common - aminotransferase, classes I and II DVU2364 225 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 46580684 Nonpathogen - hypothetical protein DVU2279 1 None None None 46579012 Common - carbon starvation protein A, putative DVU0598 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 46579133 Common - HAMP domain protein DVU0720 20 COG3322 COG3322, Predicted periplasmic ligand-binding sensor domain Signal transduction mechanisms 46581538 Common - nitroreductase family protein DVU3136 91 COG0778 NfnB, Nitroreductase Energy production and conversion 46580167 Common - site-specific recombinase, phage integrase family DVU1757 128 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 46579969 Common - cysteine-rich domain/iron-sulfur cluster-binding domain protein DVU1558 56 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 46580391 Common rhlE ATP-dependent RNA helicase RhlE DVU1982 235 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 46578483 Common - cytidine/deoxycytidylate deaminase domain protein DVU0066 15 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 46581698 Common - tryptophan-specific transport protein DVU3297 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 46579206 Nonpathogen - hypothetical protein DVU0793 1 None None None 46579077 Common cysK cysteine synthase A DVU0663 220 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 46579186 Nonpathogen - hypothetical protein DVU0773 1 None None None 46580637 Nonpathogen - hypothetical protein DVU2232 1 None None None 46579396 Common - hypothetical protein DVU0983 69 COG1259 COG1259, Uncharacterized conserved protein Function unknown 46580538 Common - hypothetical protein DVU2133 48 COG2855 COG2855, Predicted membrane protein Function unknown 46581769 Common hisS histidyl-tRNA synthetase DVU3368 248 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 46579287 Common rpsB 30S ribosomal protein S2 DVU0874 236 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 46581615 Nonpathogen - hypothetical protein DVU3213 1 None None None 46580199 Common dnaG DNA primase DVU1789 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 46579104 Common - hypothetical protein DVU0690 9 COG5581 COG5581, Predicted glycosyltransferase Cell envelope biogenesis, outer membrane 46579960 Common - hypothetical protein DVU1549 74 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 46580998 Nonpathogen - hypothetical protein DVU2594 1 None None None 46580730 Common merP mercuric transport protein periplasmic component DVU2325 50 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 46580880 Common gltA putative oxidoreductase DVU2476 220 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 46578420 Common gyrB DNA gyrase, B subunit DVU0003 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 46579983 Common - transcriptional regulator, CarD family DVU1572 83 COG1329 COG1329, Transcriptional regulators, similar to M. xanthus CarD Transcription 46580706 Nonpathogen - lipoprotein, putative DVU2301 1 None None None 46579768 Nonpathogen - hypothetical protein DVU1357 15 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 46578974 Common - hypothetical protein DVU0560 11 None None None 46579499 Nonpathogen - hypothetical protein DVU1086 1 None None None 46580043 Common - PTS system, IIA component DVU1632 94 COG2893 ManX, Phosphotransferase system, mannose/fructose-specific component IIA Carbohydrate transport and metabolism 46581108 Common - hypothetical protein DVU2704 7 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 46579951 Common purU formyltetrahydrofolate deformylase DVU1540 220 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 46578447 Common - transcriptional regulator, GntR family DVU0030 226 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 46579386 Common - 4-hydroxybenzoate octaprenyltransferase, putative DVU0973 153 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 46580697 Common hypA hydrogenase nickel insertion protein HypA DVU2292 101 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 46578778 Common - hypothetical protein DVU0362 9 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 46581030 Nonpathogen - hypothetical protein DVU2626 1 None None None 46581767 Common def polypeptide deformylase DVU3366 214 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 46578941 Common - drug resistance transporter, putative DVU0526 221 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 46580062 Common - HIT family protein DVU1652 106 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 46579490 Common - inner membrane protein, 60 kDa DVU1077 212 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 46580137 Nonpathogen - hypothetical protein DVU1727 1 None None None 46581418 Common - hypothetical protein DVU3015 35 COG4627 COG4627, Uncharacterized protein conserved in bacteria Function unknown 46578429 Nonpathogen - hypothetical protein DVU0012 1 None None None 46579437 Common rluD/coaE ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase DVU1024 216 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 46578987 Common creA creA protein DVU0573 57 COG3045 CreA, Uncharacterized protein conserved in bacteria Function unknown 46581317 Common - lipoprotein, putative DVU2913 31 COG3872 COG3872, Predicted metal-dependent enzyme General function prediction only 46580455 Nonpathogen - hypothetical protein DVU2048 1 None None None 46578874 Nonpathogen - hypothetical protein DVU0458 1 None None None 46580120 Common - hypothetical protein DVU1710 9 None None None 46580045 Nonpathogen - hypothetical protein DVU1634 1 COG3715 ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Carbohydrate transport and metabolism 46578637 Common - tail fiber protein, putative DVU0220 12 None None None 46578608 Nonpathogen - hypothetical protein DVU0191 5 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 46580924 Nonpathogen - hypothetical protein DVU2520 1 None None None 46579959 Common - outer membrane transport protein, OmpP1/FadL/TodX family DVU1548 75 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 46581201 Common - ferredoxin DVU2797 106 COG2878 COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB Energy production and conversion 46580107 Nonpathogen - hypothetical protein DVU1697 2 None None None 46581360 Nonpathogen - hypothetical protein DVU2957 1 None None None 46579193 Nonpathogen - ATP synthase F0, B' subunit, putative DVU0780 1 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 46581452 Common - hemerythrin family protein DVU3049 44 COG2703 COG2703, Hemerythrin Inorganic ion transport and metabolism 46581609 Common - RNB-like family protein DVU3207 168 COG0557 VacB, Exoribonuclease R Transcription 46578534 Common - glycosyl transferase, group 2 family protein DVU0117 122 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 46578720 Common - hypothetical protein DVU0304 5 None None None 46580662 Nonpathogen - hypothetical protein DVU2257 1 None None None 46579141 Nonpathogen - hypothetical protein DVU0728 1 None None None 46581394 Nonpathogen - hypothetical protein DVU2991 1 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 46579680 Nonpathogen - hypothetical protein DVU1269 1 None None None 46580624 Nonpathogen - hypothetical protein DVU2219 1 None None None 46578805 Common - amino acid ABC tranporter, permease protein, His/Glu/Gln/Arg/opine family DVU0389 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 46581789 Common - lipoprotein, putative DVU3388 130 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 46579923 Nonpathogen - hypothetical protein DVU1512 1 None None None 46580764 Common - sigma-54 dependent transcriptional regulator DVU2359 173 COG3604 FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains Transcription / Signal transduction mechanisms 46581782 Common - transcriptional regulatory protein zraR DVU3381 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46578699 Common - AhpF family protein/thioredoxin reductase DVU0283 249 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 46581547 Common - hydrogenase, b-type cytochrome subunit, putative DVU3145 38 COG4117 COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) Energy production and conversion 46581542 Common - capsular polysaccharide transport protein, putative DVU3140 57 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 46579463 Common ccmF cytochrome c-type biogenesis protein CcmF DVU1050 173 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 46581276 Common - phage portal protein, lambda family DVU2872 37 COG5511 COG5511, Bacteriophage capsid protein General function prediction only 46578892 Nonpathogen - hypothetical protein DVU0476 1 None None None 46578623 Nonpathogen - hypothetical protein DVU0206 2 None None None 46579549 Common - host-nuclease inhibitor protein Gam, putative DVU1136 7 COG4396 COG4396, Mu-like prophage host-nuclease inhibitor protein Gam General function prediction only 46580183 Nonpathogen - hypothetical protein DVU1773 1 None None None 46581043 Common - hypothetical protein DVU2639 7 None None None 46579319 Common lipB lipoate-protein ligase B DVU0906 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 46580176 Common - aspartate ammonia-lyase DVU1766 201 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 46580945 Common - CoA-substrate-specific enzyme activase, putative DVU2541 65 COG1924 COG1924, Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) Lipid metabolism 46580251 Common - lipoprotein, putative DVU1842 2 None None None 46579485 Common - hypothetical protein DVU1072 10 None None None 46580611 Common - hypothetical protein DVU2206 50 COG2964 COG2964, Uncharacterized protein conserved in bacteria Function unknown 46580887 Nonpathogen - cytochrome c family protein DVU2483 9 None None None 46581092 Common - bacteriophage transposase A protein DVU2688 31 None None None 46579803 Common - NLP/P60 family protein DVU1392 136 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 46579867 Common - NIF3 family protein DVU1456 75 COG0327 COG0327, Uncharacterized conserved protein Function unknown 46581408 Common - aminotransferase, DegT/DnrJ/EryC1/StrS family DVU3005 189 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 46578785 Nonpathogen - hypothetical protein DVU0369 1 None None None 46579828 Nonpathogen - hypothetical protein DVU1417 1 None None None 46580342 Common - peptidase, PfpI family DVU1933 133 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 46581001 Nonpathogen - hypothetical protein DVU2597 1 None None None 46579758 Common - peptidase, M23/M37 family DVU1347 172 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 46581748 Common - pyruvate ferredoxin/flavodoxin oxidoreductase family protein DVU3347 78 COG1014 PorG, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit Energy production and conversion 46581401 Nonpathogen - hypothetical protein DVU2998 2 COG2263 COG2263, Predicted RNA methylase Translation, ribosomal structure and biogenesis 46580576 Common - portal protein DVU2171 37 COG5511 COG5511, Bacteriophage capsid protein General function prediction only 46581072 Common - UDP-N-acetylglucosamine pyrophosphorylase, putative DVU2668 235 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 46580532 Nonpathogen - von Willebrand factor type A domain protein DVU2127 6 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 46579048 Nonpathogen - hypothetical protein DVU0634 1 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 46579689 Common ftsH cell division protein FtsH DVU1278 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 46581436 Common - iron-sulfur cluster-binding protein DVU3033 184 COG1139 COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain Energy production and conversion 46581344 Nonpathogen - hypothetical protein DVU2940 1 None None None 46580493 Common - hypothetical protein DVU2088 163 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 46581163 Nonpathogen - hypothetical protein DVU2759 1 None None None 46578757 Common - 3-deoxy-manno-octulosonate cytidylyltransferase DVU0341 145 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 46578912 Common - hypothetical protein DVU0497 2 None None None 46578591 Nonpathogen - hypothetical protein DVU0174 1 None None None 46581681 Common cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase DVU3279 118 COG2038 CobT, NaMN:DMB phosphoribosyltransferase Coenzyme metabolism 46579248 Common rplS 50S ribosomal protein L19 DVU0835 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 46578825 Nonpathogen - hypothetical protein DVU0409 1 None None None 46581723 Common - ABC transporter, permease protein DVU3323 56 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 46580489 Common - oligopeptide-binding protein, putative DVU2084 214 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 46579368 Common alr alanine racemase DVU0955 199 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 46579783 Common - hypothetical protein DVU1372 93 COG0762 COG0762, Predicted integral membrane protein Function unknown 46581656 Common - PDZ domain protein DVU3254 27 COG3016 PhuW, Uncharacterized iron-regulated protein Function unknown 46580871 Common rnr ribonuclease R DVU2467 194 COG0557 VacB, Exoribonuclease R Transcription 46579698 Common - reductase, iron-sulfur binding subunit, putative DVU1287 163 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 46579612 Common ribD riboflavin biosynthesis protein RibD DVU1201 230 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 46579366 Common tyrS tyrosyl-tRNA synthetase DVU0953 240 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 46579780 Nonpathogen - hypothetical protein DVU1369 1 None None None 46580449 Common - Fic family protein DVU2042 108 COG3177 COG3177, Uncharacterized conserved protein Function unknown 46580482 Common - hypothetical protein DVU2077 49 COG1413 COG1413, FOG: HEAT repeat Energy production and conversion 46579091 Common - transglycosylase domain protein DVU0677 111 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 46581645 Common dnaJ dnaJ protein DVU3243 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 46579096 Common - DNA-binding protein, putative DVU0682 4 COG2932 COG2932, Predicted transcriptional regulator Transcription 46580148 Common - site-specific recombinase, phage integrase family DVU1738 8 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 46580618 Common - nuclease domain protein DVU2213 7 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 46580347 Nonpathogen - hypothetical protein DVU1938 1 None None None 46579034 Common - endoribonuclease, L-PSP family DVU0620 181 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 46581722 Common - hypothetical protein DVU3322 18 COG4393 COG4393, Predicted membrane protein Function unknown 46581308 Common - radical SAM enzyme, Cfr family DVU2904 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 46578679 Nonpathogen - acidic cytochrome c3 DVU0263 4 None None None 46580646 Common pdxA pyridoxal phosphate biosynthetic protein PdxA DVU2241 159 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 46580000 Common - hypothetical protein DVU1589 7 None None None 46581132 Common - tail protein, putative DVU2728 25 COG3299 XkdT, Uncharacterized homolog of phage Mu protein gp47 Function unknown 46579161 Common acs acetyl-CoA synthetase DVU0748 221 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 46578677 Common - universal stress protein family DVU0261 79 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 46581476 Common - hypothetical protein DVU3073 45 COG2933 COG2933, Predicted SAM-dependent methyltransferase General function prediction only 46579054 Common pomA chemotaxis protein PomA DVU0640 109 COG1291 MotA, Flagellar motor component Cell motility and secretion 46579361 Common - hypothetical protein DVU0948 4 None None None 46581415 Nonpathogen - hypothetical protein DVU3012 1 None None None 46579198 Common rodA rod shape-determining protein RodA DVU0785 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 46579188 Common atpD F0F1 ATP synthase subunit beta DVU0775 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 46579394 Common - multiphosphoryl transfer protein, putative DVU0981 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 46579752 Common - cation ABC transporter, permease protein DVU1341 175 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 46581592 Common - hypothetical protein DVU3190 7 None None None 46581365 Common - sensor histidine kinase DVU2962 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46580808 Common hdrB heterodisulfide reductase, B subunit DVU2403 49 COG2048 HdrB, Heterodisulfide reductase, subunit B Energy production and conversion 46579026 Common - STAS domain protein DVU0612 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 46580084 Common - transcriptional regulator, putative DVU1674 44 COG2932 COG2932, Predicted transcriptional regulator Transcription 46581332 Common rpoB DNA-directed RNA polymerase subunit beta DVU2928 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 46578849 Common - Ech hydrogenase, subunit EchB, putative DVU0433 183 COG0650 HyfC, Formate hydrogenlyase subunit 4 Energy production and conversion 46579300 Common - transglycosylase, putative DVU0887 93 COG2821 MltA, Membrane-bound lytic murein transglycosylase Cell envelope biogenesis, outer membrane 46578930 Common flgH flagellar basal body L-ring protein DVU0515 98 COG2063 FlgH, Flagellar basal body L-ring protein Cell motility and secretion 46579041 Common ptB phosphotransbutyrylase DVU0627 142 COG0280 Pta, Phosphotransacetylase Energy production and conversion 46581265 Nonpathogen - hypothetical protein DVU2861 1 None None None 46578574 Common thiL thiamin-monophosphate kinase DVU0157 188 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 46581515 Common - TPR domain protein DVU3112 28 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 46581014 Nonpathogen - hypothetical protein DVU2610 1 None None None 46578952 Nonpathogen - hypothetical protein DVU0537 1 None None None 46581291 Common - hypothetical protein DVU2887 61 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 46581753 Common - lipoprotein, putative DVU3352 4 None None None 46579730 Common rplR 50S ribosomal protein L18 DVU1319 216 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 46578935 Common - flagellar hook-associated protein FlgL, putative DVU0520 80 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 46581109 Common - phage uncharacterized protein DVU2705 10 None None None 46579217 Common - sigma-54 dependent transcriptional regulator/response regulator DVU0804 214 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46578440 Nonpathogen - hypothetical protein DVU0023 1 None None None 46579456 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein DVU1043 238 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 46578549 Nonpathogen - hypothetical protein DVU0132 7 COG0730 COG0730, Predicted permeases General function prediction only 46580750 Nonpathogen - hypothetical protein DVU2345 1 None None None 46579378 Nonpathogen - hypothetical protein DVU0965 1 None None None 46580630 Common - acetyl-CoA carboxylase, carboxyl transferase, alpha/beta subunit DVU2225 176 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 46579529 Nonpathogen - hypothetical protein DVU1116 1 None None None 46580242 Common - phosphoenolpyruvate synthase, putative DVU1833 233 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 46579531 Common - hypothetical protein DVU1118 12 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 46579886 Common - PhoU family protein DVU1475 193 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 46581327 Common nusG transcription antitermination protein NusG DVU2923 215 COG0250 NusG, Transcription antiterminator Transcription 46579274 Common - glycosyl transferase, group 1 family protein DVU0861 95 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46581189 Common - transcriptional regulator, GntR family DVU2785 130 COG2186 FadR, Transcriptional regulators Transcription 46581687 Nonpathogen - hypothetical protein DVU3286 1 None None None 46581505 Nonpathogen - hypothetical protein DVU3102 1 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 46578489 Common - glucose-1-phosphate cytidylyl-transferase DVU0072 179 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 46578480 Common - transcriptional regulator, MarR family DVU0063 108 COG1846 MarR, Transcriptional regulators Transcription 46580517 Nonpathogen - hypothetical protein DVU2112 1 None None None 46579002 Common - formate dehydrogenase, beta subunit, putative DVU0588 125 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 46579774 Common rfbD dTDP-4-dehydrorhamnose reductase DVU1363 166 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 46580679 Nonpathogen - hypothetical protein DVU2274 1 None None None 46580394 Common - hypothetical protein DVU1985 24 COG1432 COG1432, Uncharacterized conserved protein Function unknown 46580112 Common - hypothetical protein DVU1702 150 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 46579263 Common - heterodisulfide reductase, transmembrane subunit, putative DVU0850 37 COG1150 HdrC, Heterodisulfide reductase, subunit C Energy production and conversion 46581050 Common - D-cysteine desulfhydrase DVU2646 82 COG2515 Acd, 1-aminocyclopropane-1-carboxylate deaminase Amino acid transport and metabolism 46578860 Common - CBS domain protein DVU0444 42 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 46579629 Common - hypothetical protein DVU1218 50 COG0011 COG0011, Uncharacterized conserved protein Function unknown 46580418 Common - ISD1, transposase OrfB DVU2010 119 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 46579860 Common - anti-anti-sigma factor, putative DVU1449 22 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 46580235 Common - amidohydrolase family protein DVU1825 171 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 46581026 Nonpathogen - hypothetical protein DVU2622 1 None None None 46579429 Nonpathogen - hypothetical protein DVU1016 1 None None None 46581447 Nonpathogen - hypothetical protein DVU3044 1 None None None 46578959 Nonpathogen - hypothetical protein DVU0544 1 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 46579124 Nonpathogen - hypothetical protein DVU0711 1 None None None 46581661 Common xth exodeoxyribonuclease III DVU3259 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 46580937 Common pheT phenylalanyl-tRNA synthetase, beta subunit DVU2533 234 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 46581482 Common - glyoxalase family protein DVU3079 39 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 46581457 Common - radical SAM domain protein DVU3054 46 COG0731 COG0731, Fe-S oxidoreductases Energy production and conversion 46580330 Common hynB-1 periplasmic [NiFe] hydrogenase, small subunit, isozyme 1 DVU1921 79 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 46581256 Common - tail protein, putative DVU2852 18 COG4381 COG4381, Mu-like prophage protein gp46 Function unknown 46581141 Common - RNA methyltransferase, TrmH family DVU2737 162 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 46581550 Common malQ 4-alpha-glucanotransferase DVU3148 120 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 46581242 Common - hypothetical protein DVU2838 88 COG1078 COG1078, HD superfamily phosphohydrolases General function prediction only 46580703 Common - glycine/betaine/L-proline ABC transporter, permease protein DVU2298 170 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 46579191 Common atpH ATP synthase, F1 delta subunit DVU0778 172 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 46579786 Nonpathogen - hypothetical protein DVU1375 2 None None None 46579291 Common - dnaK suppressor protein, putative DVU0878 4 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 46580507 Common - outer membrane protein, OMP85 family DVU2102 128 COG0729 COG0729, Outer membrane protein Cell envelope biogenesis, outer membrane 46580892 Nonpathogen - hypothetical protein DVU2488 1 None None None 46580964 Nonpathogen - hypothetical protein DVU2560 3 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 46581173 Common - hypothetical protein DVU2769 21 COG5266 CbiK, ABC-type Co2+ transport system, periplasmic component Inorganic ion transport and metabolism 46581137 Common - adenine specific DNA methyltransferase, putative DVU2733 107 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 46580856 Nonpathogen - hypothetical protein DVU2452 1 None None None 46579308 Common - helicase, RecD/TraA family DVU0895 143 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 46580709 Nonpathogen - hypothetical protein DVU2304 1 None None None 46580356 Common - pyruvate ferredoxin oxidoreductase, gamma subunit, putative DVU1947 60 COG1014 PorG, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit Energy production and conversion 46581035 Nonpathogen - hypothetical protein DVU2631 1 None None None 46581161 Common - radical SAM domain protein DVU2757 81 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 46581386 Common leuD 3-isopropylmalate dehydratase, small subunit DVU2983 197 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 46581766 Common fmt methionyl-tRNA formyltransferase DVU3365 225 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 46579389 Common - response regulator DVU0976 26 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 46580277 Common dapA dihydrodipicolinate synthase DVU1868 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 46580837 Common - sensory box/GGDEF domain/EAL domain protein DVU2432 195 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 46579514 Nonpathogen - hypothetical protein DVU1101 1 None None None 46580228 Common secF preprotein translocase subunit SecF DVU1818 205 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 46579655 Common - hypothetical protein DVU1244 107 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 46579707 Nonpathogen - hypothetical protein DVU1296 1 None None None 46579895 Nonpathogen - hypothetical protein DVU1484 2 None None None 46578585 Common - oligopeptide/dipeptide ABC transporter, permease protein DVU0168 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 46581098 Nonpathogen - hypothetical protein DVU2694 1 None None None 46578808 Common - aromatic aminotransferase DVU0392 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 46578714 Nonpathogen - hypothetical protein DVU0298 5 None None None 46578742 Common hypE hydrogenase expression/formation protein HypE DVU0326 139 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 46579586 Nonpathogen - hypothetical protein DVU1175 1 None None None 46580262 Nonpathogen - hypothetical protein DVU1853 1 None None None 46580814 Common - bacterial extracellular solute-binding proteins, family 3 DVU2409 60 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46578946 Common - hmc operon protein 6 DVU0531 39 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 46580591 Nonpathogen - hypothetical protein DVU2186 1 None None None 46578993 Common - molybdopterin-guanine dinucleotide biosynthesis protein A, putative DVU0579 17 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 46580605 Nonpathogen - hypothetical protein DVU2200 1 None None None 46580007 Common cheB-1 protein-glutamate methylesterase CheB DVU1596 203 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 46580760 Common trmH tRNA (guanosine-2'-O-)-methyltransferase DVU2355 200 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 46579259 Common aprB adenylylsulphate reductase, beta subunit DVU0846 26 COG1146 COG1146, Ferredoxin Energy production and conversion 46580755 Common gid tRNA (uracil-5-)-methyltransferase Gid DVU2350 125 COG1206 Gid, NAD(FAD)-utilizing enzyme possibly involved in translation Translation, ribosomal structure and biogenesis 46580832 Nonpathogen - hypothetical protein DVU2427 5 None None None 46580510 Nonpathogen - hypothetical protein DVU2105 1 None None None 46578731 Common flgC flagellar basal-body rod protein FlgC DVU0315 126 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 46580695 Nonpathogen - hydrogenase, CooU subunit, putative DVU2290 9 COG0852 NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit Energy production and conversion 46580169 Common - molybdenum-binding protein, HTH domain DVU1759 35 COG2005 ModE, N-terminal domain of molybdenum-binding protein General function prediction only 46581217 Nonpathogen - hypothetical protein DVU2813 1 None None None 46581323 Nonpathogen - hypothetical protein DVU2919 1 None None None 46580542 Common sucCD succinyl-CoA synthase, beta/alpha subunits DVU2137 212 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 46580401 Common - antibiotic acetyltransferase DVU1992 162 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 46580500 Common thiS thiamine biosynthesis protein ThiS DVU2095 31 COG2104 ThiS, Sulfur transfer protein involved in thiamine biosynthesis Coenzyme metabolism 46578558 Common - peptidase, M50 family DVU0141 98 COG1994 SpoIVFB, Zn-dependent proteases General function prediction only 46581005 Nonpathogen - hypothetical protein DVU2601 1 None None None 46580900 Nonpathogen - lipoprotein, putative DVU2496 1 None None None 46580154 Nonpathogen - DNA-binding protein DVU1744 1 COG1396 HipB, Predicted transcriptional regulators Transcription 46581223 Common - transcriptional regulator, TetR family DVU2819 121 COG1309 AcrR, Transcriptional regulator Transcription 46580378 Nonpathogen - hypothetical protein DVU1969 1 COG2427 COG2427, Uncharacterized conserved protein Function unknown 46578435 Common - methyl-accepting chemotaxis protein, putative DVU0018 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46579430 Common - ABC transporter, ATP-binding protein/permease protein DVU1017 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 46579728 Common rpsH 30S ribosomal protein S8 DVU1317 217 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 46580162 Nonpathogen - hypothetical protein DVU1752 1 None None None 46581617 Common - response regulator DVU3215 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46580827 Common - nitroreductase family protein DVU2422 45 COG0778 NfnB, Nitroreductase Energy production and conversion 46578478 Common - multidrug resistance protein, putative DVU0061 179 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 46580781 Common lysS lysyl-tRNA synthetase DVU2376 249 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 46580201 Common - GatB/Yqey family protein DVU1791 151 COG1610 COG1610, Uncharacterized conserved protein Function unknown 46580016 Common uvrB excinuclease ABC subunit B DVU1605 227 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 46579550 Nonpathogen - hypothetical protein DVU1137 1 None None None 46579405 Common cheV-3 chemotaxis protein CheV DVU0992 199 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 46579700 Common - reductase, iron-sulfur binding subunit, putative DVU1289 60 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 46578985 Common ald alanine dehydrogenase DVU0571 167 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 46581718 Nonpathogen - hypothetical protein DVU3318 1 None None None 46578962 Common - high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein DVU0547 152 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 46580822 Common - SlyX protein DVU2417 11 COG2900 SlyX, Uncharacterized protein conserved in bacteria Function unknown 46578640 Nonpathogen - hypothetical protein DVU0223 1 COG1724 COG1724, Predicted periplasmic or secreted lipoprotein Cell motility and secretion 46580284 Common - dafA protein DVU1875 2 None None None 46581676 Nonpathogen - hypothetical protein DVU3274 6 None None None 46580622 Common - acetyltransferase, GNAT family DVU2217 92 COG3153 COG3153, Predicted acetyltransferase General function prediction only 46581712 Common - hypothetical protein DVU3312 11 None None None 46581663 Common frdC fumarate reductase, cytochrome b subunit DVU3261 5 None None None 46579663 Common - hypothetical protein DVU1252 7 COG1287 COG1287, Uncharacterized membrane protein, required for N-linked glycosylation General function prediction only 46579356 Common - hypothetical protein DVU0943 67 COG2855 COG2855, Predicted membrane protein Function unknown 46581212 Nonpathogen - TonB domain protein DVU2808 4 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 46579070 Nonpathogen - hypothetical protein DVU0656 15 COG2835 COG2835, Uncharacterized conserved protein Function unknown 46580767 Common thiE thiamine-phosphate pyrophosphorylase DVU2362 184 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 46579067 Common - sigma-54 dependent transcriptional regulator, putative/response regulator DVU0653 169 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46581387 Common - hypothetical protein DVU2984 40 COG1578 COG1578, Uncharacterized conserved protein Function unknown 46578723 Common - flagella basal body rod domain protein DVU0307 126 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 46580747 Common - amino acid ABC transporter, periplasmic amino acid-binding protein DVU2342 181 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46579503 Common recA recombinase A DVU1090 240 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 46578449 Nonpathogen - hypothetical protein DVU0032 6 COG4392 COG4392, Predicted membrane protein Function unknown 46579598 Nonpathogen - hypothetical protein DVU1187 1 None None None 46579298 Common - amidohydrolase family protein DVU0885 16 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 46578526 Common - sensor histidine kinase DVU0109 222 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46580416 Nonpathogen - hypothetical protein DVU2008 1 None None None 46579853 Nonpathogen - flagellin FlaG, putative DVU1442 3 COG1334 FlaG, Uncharacterized flagellar protein FlaG Cell motility and secretion 46580223 Nonpathogen - hypothetical protein DVU1813 2 None None None 46579351 Common - isoamylase N-terminal domain protein DVU0938 16 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 46579934 Common - hypothetical protein DVU1523 6 None None None 46580986 Common - transcriptional regulator, TetR family DVU2582 129 COG1309 AcrR, Transcriptional regulator Transcription 46579039 Common - cytochrome c nitrite reductase, catalytic subunit NfrA, putative DVU0625 40 COG3303 NrfA, Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit Inorganic ion transport and metabolism 46579032 Nonpathogen - hypothetical protein DVU0618 1 None None None 46581489 Common cobB-2 cobyrinic acid a,c-diamide synthase DVU3086 136 COG1797 CobB, Cobyrinic acid a,c-diamide synthase Coenzyme metabolism 46579400 Common - heavy metal-binding domain protein DVU0987 4 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 46580561 Nonpathogen - hypothetical protein DVU2156 3 None None None 46581063 Common - exsB protein DVU2659 169 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 46578790 Common - pyruvate ferredoxin/flavodoxin oxidoreductase family protein DVU0374 94 COG4231 COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Energy production and conversion 46578885 Common trpF-1 N-(5'-phosphoribosyl)anthranilate isomerase DVU0469 175 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 46579814 Common cobO cob(I)alamin adenosyltransferase DVU1403 142 COG2109 BtuR, ATP:corrinoid adenosyltransferase Coenzyme metabolism 46578562 Common - response regulator DVU0145 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46580387 Common - Na+/H+ antiporter family protein DVU1978 74 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 46581675 Nonpathogen - hypothetical protein DVU3273 3 None None None 46580296 Nonpathogen - hypothetical protein DVU1887 1 COG1578 COG1578, Uncharacterized conserved protein Function unknown 46578927 Common - flagellar basal-body rod protein, putative DVU0512 122 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 46578666 Nonpathogen - hypothetical protein DVU0250 1 None None None 46578589 Common - iron-sulfur cluster-binding protein DVU0172 163 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 46578869 Common - ATP-dependent DNA helicase, UvrD/REP family DVU0453 234 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 46579410 Common metF 5,10-methylenetetrahydrofolate reductase DVU0997 161 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 46580038 Common - ABC transporter, ATP-binding protein DVU1627 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 46581406 Common - radical SAM domain protein DVU3003 32 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 46580213 Common - glycosyl transferase, group 1 family protein DVU1803 170 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46581500 Common - outer membrane efflux protein DVU3097 142 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 46579322 Nonpathogen - hypothetical protein DVU0909 1 None None None 46579630 Common - hypothetical protein DVU1219 8 None None None 46578507 Common wcaG GDP-fucose synthetase DVU0090 218 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 46581610 Common - hypothetical protein DVU3208 170 COG0344 COG0344, Predicted membrane protein Function unknown 46579344 Common thiD phosphomethylpyrimidine kinase DVU0931 218 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 46580909 Common - cell cycle protein, FtsW/RodA/SpoVE family DVU2505 206 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 46580438 Nonpathogen - hypothetical protein DVU2031 1 None None None 46579419 Nonpathogen - hypothetical protein DVU1006 2 None None None 46581599 Common ilvE branched-chain amino acid aminotransferase DVU3197 219 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 46578649 Nonpathogen - hypothetical protein DVU0232 1 None None None 46578835 Common nspC carboxynorspermidine decarboxylase DVU0419 50 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 46579325 Common - hypothetical protein DVU0912 5 COG3334 COG3334, Uncharacterized conserved protein Function unknown 46578908 Common - hypothetical protein DVU0493 13 None None None 46579847 Nonpathogen - hypothetical protein DVU1436 1 None None None 46579687 Nonpathogen - hypothetical protein DVU1276 2 COG4972 PilM, Tfp pilus assembly protein, ATPase PilM Cell motility and secretion / Intracellular trafficking and secretion 46579843 Common - radical SAM domain protein DVU1432 70 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 46579677 Common - hypothetical protein DVU1266 8 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 46580450 Common - hypothetical protein DVU2043 13 COG4547 CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) Coenzyme metabolism 46581620 Common pncA pyrazinamidase/nicotinamidase DVU3218 121 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 46580077 Common - FtsK/SpoIIIE family protein DVU1667 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 46581356 Common - transcriptional regulator, GntR family DVU2953 226 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 46579474 Common - glycosyl transferase, group 1 family protein DVU1061 173 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46581775 Nonpathogen - permease, putative DVU3374 1 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 46580382 Common - rhodanese-like domain protein DVU1973 169 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 46578567 Nonpathogen - hypothetical protein DVU0150 2 None None None 46578915 Common selB selenocysteine-specific translation elongation factor DVU0500 249 COG3276 SelB, Selenocysteine-specific translation elongation factor Translation, ribosomal structure and biogenesis 46579159 Common - ABC transporter, permease protein DVU0746 189 COG4662 TupA, ABC-type tungstate transport system, periplasmic component Coenzyme metabolism 46579881 Common ppiC peptidyl-prolyl cis-trans isomerase C DVU1470 143 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 46581111 Common - virion morphogenesis protein DVU2707 28 COG2369 COG2369, Uncharacterized protein, homolog of phage Mu protein gp30 Function unknown 46580479 Common - chemotaxis protein CheW DVU2074 128 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 46578612 Nonpathogen - hypothetical protein DVU0195 1 None None None 46581783 Common zraS sensor protein ZraS DVU3382 223 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 46580010 Common crcB crcB protein DVU1599 83 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 46581315 Common - hemolysin A DVU2911 132 COG1189 COG1189, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 46581341 Common - TPR domain protein/response regulator receiver domain protein DVU2937 81 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 46578883 Common trpD anthranilate phosphoribosyltransferase DVU0467 217 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 46579650 Common - hypothetical protein DVU1239 49 COG2431 COG2431, Predicted membrane protein Function unknown 46580393 Common msrA peptide methionine sulfoxide reductase MsrA DVU1984 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 46578701 Common hisH imidazole glycerol phosphate synthase subunit HisH DVU0285 214 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 46580220 Nonpathogen - hypothetical protein DVU1810 2 None None None 46578674 Common - sensory box histidine kinase/response regulator DVU0258 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46579995 Common - sigma 70 family protein DVU1584 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 46581455 Common - ABC transporter, ATP-binding protein DVU3052 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 46579380 Common - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family DVU0967 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 46581580 Common - hypothetical protein DVU3178 14 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 46580737 Common proC pyrroline-5-carboxylate reductase DVU2332 212 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 46579346 Common - response regulator DVU0933 169 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 46581008 Common - hypothetical protein DVU2604 8 None None None 46580166 Nonpathogen - hypothetical protein DVU1756 1 None None None 46580534 Common - sensory box histidine kinase/response regulator DVU2129 218 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 46580229 Common secD preprotein translocase subunit SecD DVU1819 220 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 46580903 Common ftsZ cell division protein FtsZ DVU2499 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 46579854 Common flgE flagellar hook protein FlgE DVU1443 126 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 46581588 Nonpathogen - hypothetical protein DVU3186 1 None None None 46580941 Common infC translation initiation factor IF-3 DVU2537 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 46579090 Common - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family DVU0676 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 46578856 Common - hypothetical protein DVU0440 35 COG3681 COG3681, Uncharacterized conserved protein Function unknown 46579785 Common - hypothetical protein DVU1374 57 COG1872 COG1872, Uncharacterized conserved protein Function unknown 46580028 Common - nitroreductase family protein DVU1617 41 COG0778 NfnB, Nitroreductase Energy production and conversion 46581692 Common - glutamate synthase, iron-sulfur cluster-binding subunit, putative DVU3291 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 46580699 Common - femAB family protein DVU2294 25 COG2348 COG2348, Uncharacterized protein involved in methicillin resistance Defense mechanisms 46581101 Common - hypothetical protein DVU2697 4 None None None 46579544 Nonpathogen - hypothetical protein DVU1131 1 None None None 46581330 Common rplJ 50S ribosomal protein L10 DVU2926 209 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 46579316 Common - HD domain protein DVU0903 60 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 46579363 Nonpathogen - hypothetical protein DVU0950 1 None None None 46579466 Nonpathogen - hypothetical protein DVU1053 1 None None None 46578945 Common - response regulator, rrf1 protein DVU0530 102 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46580458 Common - hypothetical protein DVU2053 43 COG0398 COG0398, Uncharacterized conserved protein Function unknown 46579042 Common buk butyrate kinase DVU0628 26 COG3426 COG3426, Butyrate kinase Energy production and conversion 46581653 Common - membrane protein, HPP family DVU3251 68 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 46579686 Nonpathogen - hypothetical protein DVU1275 1 None None None 46580733 Common - hydrogenase nickel insertion protein HypA, putative DVU2328 89 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 46578783 Common - Ser/Thr protein phosphatase family protein DVU0367 34 COG2129 COG2129, Predicted phosphoesterases, related to the Icc protein General function prediction only 46578454 Common - hypothetical protein DVU0037 70 COG1683 COG1683, Uncharacterized conserved protein Function unknown 46581647 Common greA transcription elongation factor GreA DVU3245 204 COG0782 GreA, Transcription elongation factor Transcription 46580100 Common - transcriptional regulator, TetR family DVU1690 83 COG1309 AcrR, Transcriptional regulator Transcription 46580041 Common - PTS system, IIA component DVU1630 136 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 46578826 Common - hypothetical protein DVU0410 4 None None None 46581169 Common - metallo-beta-lactamase family protein DVU2765 190 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 46581271 Nonpathogen - holin DVU2867 1 COG4824 COG4824, Phage-related holin (Lysis protein) General function prediction only 46581651 Common - lipoprotein, putative DVU3249 15 None None None 46578818 Common dsvA dissimilatory sulfite reductase alpha subunit DVU0402 30 COG2221 DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits Energy production and conversion 46578511 Common - methyl-accepting chemotaxis protein DVU0094 19 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46581791 Nonpathogen - hypothetical protein DVU3390 1 None None None 46581686 Nonpathogen - hypothetical protein DVU3285 1 None None None 46580318 Common acpS holo-(acyl-carrier-protein) synthase DVU1909 159 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 46580484 Common - sensory box histidine kinase DVU2079 202 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46579668 Common - RNA-binding protein DVU1257 66 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 46580631 Common - acetyl-CoA carboxylase, biotin carboxylase, putative DVU2226 222 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 46580060 Common - hypothetical protein DVU1650 68 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 46580840 Common - transporter, CorA family DVU2435 148 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 46579246 Common - conserved hypothetical protein TIGR00252 DVU0833 66 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 46581516 Common carA carbamoyl phosphate synthase small subunit DVU3113 230 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 46580365 Common - heptosyltransferase family protein DVU1956 104 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 46579328 Common - hypothetical protein DVU0915 74 COG1912 COG1912, Uncharacterized conserved protein Function unknown 46578890 Common - ISDvu4, transposase DVU0474 50 None None None 46578764 Common - hypothetical protein DVU0348 5 None None None 46579149 Common purN phosphoribosylglycinamide formyltransferase DVU0736 221 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 46578659 Common - SEC-C motif domain protein DVU0242 132 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 46580306 Common glyS glycyl-tRNA synthetase, beta subunit DVU1897 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 46581358 Nonpathogen - hypothetical protein DVU2955 1 None None None 46581548 Nonpathogen - hypothetical protein DVU3146 1 None None None 46579721 Common rplP 50S ribosomal protein L16 DVU1310 222 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 46581760 Nonpathogen - hypothetical protein DVU3359 1 None None None 46580444 Common - cobS protein, putative DVU2037 93 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 46578729 Common fliF flagellar M-ring protein FliF DVU0313 125 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 46581691 Nonpathogen - hypothetical protein DVU3290 23 COG0067 GltB, Glutamate synthase domain 1 Amino acid transport and metabolism 46578501 Common - translation initiation factor, aIF-2BI family, putative DVU0084 131 COG0182 COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family Translation, ribosomal structure and biogenesis 46581073 Nonpathogen - hypothetical protein DVU2669 1 None None None 46579051 Common - hypothetical protein DVU0637 82 COG2509 COG2509, Uncharacterized FAD-dependent dehydrogenases General function prediction only 46581709 Common - endo/excinuclease amino terminal domain protein DVU3309 39 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 46581478 Nonpathogen - hypothetical protein DVU3075 1 None None None 46579933 Nonpathogen - hypothetical protein DVU1522 1 None None None 46581621 Nonpathogen - hypothetical protein DVU3219 1 None None None 46579442 Common hisC histidinol-phosphate aminotransferase DVU1029 226 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 46579547 Common hupB DNA-binding protein HU, beta subunit DVU1134 187 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 46580720 Common - conserved hypothetical protein TIGR00257 DVU2315 130 COG1739 COG1739, Uncharacterized conserved protein Function unknown 46580638 Common - hypothetical protein DVU2233 73 COG0429 COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 46579926 Common - type II DNA modification methyltransferase, putative DVU1515 102 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 46579512 Nonpathogen - tail fiber assembly protein, putative DVU1099 2 None None None 46581560 Common - vacJ lipoprotein, putative DVU3158 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 46581637 Common - IMP cyclohydrolase, putative DVU3235 214 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 46579808 Common bfr bacterioferritin DVU1397 94 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 46578696 Common - glycosyl transferase, group 1 family protein DVU0280 165 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46581245 Common - type II restriction endonuclease, putative DVU2841 13 None None None 46581232 Common - site-specific recombinase, phage integrase family DVU2828 215 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 46580974 Common - GGDEF domain/HAMP domain protein DVU2570 177 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 46579304 Common - aminotransferase, classes I and II DVU0891 237 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 46578638 Common - tail fiber assembly protein, putative DVU0221 5 None None None 46581438 Common - methyl-accepting chemotaxis protein, putative DVU3035 155 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46580935 Common rpe ribulose-phosphate 3-epimerase DVU2531 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 46581042 Nonpathogen - hypothetical protein DVU2638 1 None None None 46580951 Common - transcriptional regulator, putative DVU2547 173 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 46578876 Common - fructose-bisphosphate aldolase DVU0460 90 COG1830 FbaB, DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes Carbohydrate transport and metabolism 46581471 Common - GAF domain/sensory box/EAL domain protein DVU3068 195 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 46578871 Nonpathogen - hypothetical protein DVU0455 2 COG0648 Nfo, Endonuclease IV DNA replication, recombination, and repair 46580798 Nonpathogen - hypothetical protein DVU2393 1 None None None 46578960 Nonpathogen - hypothetical protein DVU0545 1 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 46579821 Nonpathogen - hypothetical protein DVU1410 2 COG4641 COG4641, Uncharacterized protein conserved in bacteria Function unknown 46579483 Common - branched chain amino acid ABC transporter, ATP-binding protein DVU1070 249 COG3845 COG3845, ABC-type uncharacterized transport systems, ATPase components General function prediction only 46580074 Common - GTPase EngB DVU1664 192 COG0218 COG0218, Predicted GTPase General function prediction only 46578629 Nonpathogen - hypothetical protein DVU0212 1 None None None 46581536 Common glpK glycerol kinase DVU3134 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 46578684 Nonpathogen - hypothetical protein DVU0268 1 None None None 46580991 Common - sensor histidine kinase DVU2587 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46581208 Common - metallo-beta-lactamase family protein DVU2804 24 COG1237 COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II General function prediction only 46580340 Common - iron-sulfur cluster-binding protein DVU1931 86 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 46579801 Nonpathogen - hypothetical protein DVU1390 1 None None None 46580710 Common - hypothetical protein DVU2305 58 COG1392 COG1392, Phosphate transport regulator (distant homolog of PhoU) Inorganic ion transport and metabolism 46581490 Common cobH precorrin-8X methylmutase DVU3087 118 COG2082 CobH, Precorrin isomerase Coenzyme metabolism 46578681 Nonpathogen - hypothetical protein DVU0265 4 None None None 46580908 Common murG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase DVU2504 208 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 46579741 Common rplQ 50S ribosomal protein L17 DVU1330 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 46579778 Nonpathogen - twin-arginine translocation protein, TatA/E family DVU1367 4 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 46581142 Common - methyl-accepting chemotaxis protein DVU2738 129 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46578972 Nonpathogen - hypothetical protein DVU0558 1 None None None 46580069 Nonpathogen - hypothetical protein DVU1659 1 None None None 46580562 Common - tail tape meausure protein, putative DVU2157 19 COG5281 COG5281, Phage-related minor tail protein Function unknown 46580127 Nonpathogen - hypothetical protein DVU1717 1 None None None 46579108 Common - molybdopterin oxidoreductase, molybdopterin-binding subunit, putative DVU0694 152 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 46579746 Common clpP ATP-dependent Clp protease, proteolytic subunit DVU1335 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 46579106 Common - molybdopterin oxidoreductase, transmembrane subunit, putative DVU0692 36 COG5557 COG5557, Polysulphide reductase Energy production and conversion 46579208 Common purC phosphoribosylaminoimidazole-succinocarboxamide synthase DVU0795 175 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 46580325 Nonpathogen - hypothetical protein DVU1916 1 None None None 46579162 Common - DNA-binding response regulator DVU0749 76 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 46579299 Common - thioesterase family protein DVU0886 143 COG0824 FcbC, Predicted thioesterase General function prediction only 46580498 Common thiH thiamine biosynthesis protein ThiH DVU2093 55 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 46580539 Nonpathogen - hypothetical protein DVU2134 1 None None None 46579953 Nonpathogen - hypothetical protein DVU1542 1 None None None 46580254 Nonpathogen - hypothetical protein DVU1845 1 None None None 46580434 Nonpathogen - hypothetical protein DVU2027 1 None None None 46579766 Nonpathogen - hypothetical protein DVU1355 1 None None None 46579941 Common - metallo-beta-lactamase family protein DVU1530 130 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 46579614 Common glyA serine hydroxymethyltransferase DVU1203 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 46580682 Common - hypothetical protein DVU2277 7 None None None 46579231 Common - hypothetical protein DVU0818 30 COG4262 COG4262, Predicted spermidine synthase with an N-terminal membrane domain General function prediction only 46580193 Common - cysteine-rich domain protein DVU1783 170 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 46579719 Common rplV 50S ribosomal protein L22 DVU1308 215 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 46578902 Nonpathogen - hypothetical protein DVU0486 1 None None None 46580770 Common - hypothetical protein DVU2365 45 COG3494 COG3494, Uncharacterized protein conserved in bacteria Function unknown 46581154 Common cbiD cobalamin biosynthesis protein CbiD DVU2750 92 COG1903 CbiD, Cobalamin biosynthesis protein CbiD Coenzyme metabolism 46579492 Common trmE tRNA modification GTPase TrmE DVU1079 217 COG0486 ThdF, Predicted GTPase General function prediction only 46579435 Common - SUF system FeS assembly ATPase SufC, putative DVU1022 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 46579961 Common - phosphoglycerate mutase family protein DVU1550 117 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 46578834 Common lys1 saccharopine dehydrogenase DVU0418 57 COG1748 LYS9, Saccharopine dehydrogenase and related proteins Amino acid transport and metabolism 46580491 Common - transcriptional regulator, GntR family DVU2086 207 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 46580037 Common - hypothetical protein DVU1626 2 None None None 46580466 Common pfkA diphosphate--fructose-6-phosphate 1-phosphotransferase DVU2061 161 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 46579493 Common - iron-sulfur cluster-binding protein DVU1080 34 COG2221 DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits Energy production and conversion 46579175 Common - hypothetical protein DVU0762 37 COG3449 COG3449, DNA gyrase inhibitor DNA replication, recombination, and repair 46580331 Common hynA-1 periplasmic [NiFe] hydrogenase, large subunit, isozyme 1 DVU1922 107 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 46579131 Common - ISDvu2, transposase OrfA DVU0718 31 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 46580421 Common - hydroxylamine reductase DVU2013 74 COG1151 COG1151, 6Fe-6S prismane cluster-containing protein Energy production and conversion 46581036 Nonpathogen - hypothetical protein DVU2632 1 None None None 46580131 Common - hypothetical protein DVU1721 8 None None None 46579245 Common - tetrapyrrole methylase family protein DVU0832 209 COG0313 COG0313, Predicted methyltransferases General function prediction only 46581128 Common - phage baseplate assembly protein V, putative DVU2724 19 COG4384 COG4384, Mu-like prophage protein gp45 Function unknown 46581741 Nonpathogen - hypothetical protein DVU3340 1 None None None 46580174 Common - hypothetical protein DVU1764 14 None None None 46581506 Common - tolB protein, putative DVU3103 141 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 46580587 Nonpathogen - hypothetical protein DVU2182 1 None None None 46578989 Nonpathogen - hypothetical protein DVU0575 1 None None None 46579003 Common - molybdopterin-guanine dinucleotide biosynthesis protein B, putative DVU0589 47 COG1763 MobB, Molybdopterin-guanine dinucleotide biosynthesis protein Coenzyme metabolism 46580122 Nonpathogen - hypothetical protein DVU1712 1 None None None 46579013 Common - carbon starvation protein A, putative DVU0599 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 46580134 Common - phage uncharacterized protein, putative DVU1724 7 COG5362 COG5362, Phage-related terminase General function prediction only 46581461 Common - sensory box histidine kinase/response regulator DVU3058 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46578531 Common hisG ATP phosphoribosyltransferase DVU0114 214 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 46579074 Common - phosphodiesterase DVU0660 35 COG0622 COG0622, Predicted phosphoesterase General function prediction only 46580690 Common - L-lactate permease family protein DVU2285 106 COG1620 LldP, L-lactate permease Energy production and conversion 46580473 Common - HD domain protein DVU2068 61 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 46580670 Nonpathogen - hypothetical protein DVU2265 1 None None None 46578798 Nonpathogen - hypothetical protein DVU0382 1 None None None 46578641 Common - hypothetical protein DVU0224 30 COG1598 COG1598, Uncharacterized conserved protein Function unknown 46579458 Common - hypothetical protein DVU1045 2 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 46581485 Common - methyl-accepting chemotaxis protein DVU3082 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46580912 Common murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase DVU2508 199 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 46580556 Nonpathogen - hypothetical protein DVU2151 1 None None None 46579025 Common - ABC transporter, ATP-binding protein DVU0611 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 46580110 Common - metallo-beta-lactamase family protein DVU1700 64 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 46579234 Common - hypothetical protein DVU0821 12 None None None 46579112 Common rfbC dTDP-4-dehydrorhamnose 3,5-epimerase DVU0698 168 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 46580806 Nonpathogen - hydrogenase, iron-sulfur cluster-binding subunit, putative DVU2401 32 COG1908 FrhD, Coenzyme F420-reducing hydrogenase, delta subunit Energy production and conversion 46581736 Common - potassium channel histidine kinase domain protein/universal stress protein DVU3336 90 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 46579581 Nonpathogen - hypothetical protein DVU1170 1 None None None 46579227 Common - bacterioferritin comigratory protein, putative DVU0814 213 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 46580428 Common - hypothetical protein DVU2021 19 None None None 46580786 Common - hypothetical protein DVU2381 2 None None None 46580522 Nonpathogen - hypothetical protein DVU2117 8 COG4960 CpaA, Flp pilus assembly protein, protease CpaA Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 46581165 Nonpathogen - hypothetical protein DVU2761 1 None None None 46581094 Nonpathogen - hypothetical protein DVU2690 2 COG4742 COG4742, Predicted transcriptional regulator Transcription 46581278 Nonpathogen - hypothetical protein DVU2874 1 None None None 46581139 Common paaK-3 phenylacetate-coenzyme A ligase DVU2735 131 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 46581314 Common - hypothetical protein DVU2910 66 COG1971 COG1971, Predicted membrane protein Function unknown 46579335 Nonpathogen - cytochrome c family protein DVU0922 10 None None None 46581565 Common - ABC transporter, permease protein DVU3163 151 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 46581119 Common - hypothetical protein DVU2715 4 None None None 46580528 Common - hypothetical protein DVU2123 78 COG4965 TadB, Flp pilus assembly protein TadB Intracellular trafficking and secretion 46580717 Nonpathogen - hypothetical protein DVU2312 1 None None None 46579216 Common - sensor histidine kinase DVU0803 138 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46578423 Common - universal stress protein family DVU0006 24 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 46578706 Common - lipoprotein, putative DVU0290 3 None None None 46579649 Common - amino acid ABC transporter, periplasmic amino acid-binding protein DVU1238 174 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46578590 Common - thiosulfate reductase, putative DVU0173 181 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 46578496 Common - ZIP zinc transporter family protein DVU0079 70 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 46580212 Common - hypothetical protein DVU1802 10 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 46580091 Common mreB-2 rod shape-determining protein MreB DVU1681 208 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 46578564 Nonpathogen - lipoprotein, putative DVU0147 1 None None None 46581306 Common pyrC dihydroorotase DVU2902 212 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 46579723 Common rpsQ 30S ribosomal protein S17 DVU1312 231 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 46579122 Nonpathogen - hypothetical protein DVU0709 1 None None None 46581065 Common - twin-arginine translocation pathway signal sequence domain protein DVU2661 64 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 46579864 Common fadD long-chain-fatty-acid--CoA ligase DVU1453 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 46579672 Common - hypothetical protein DVU1261 64 COG3267 ExeA, Type II secretory pathway, component ExeA (predicted ATPase) Intracellular trafficking and secretion 46580363 Common nadD nicotinate (nicotinamide) nucleotide adenylyltransferase DVU1954 177 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 46581483 Common - transcriptional regulator, putative DVU3080 30 COG4957 COG4957, Predicted transcriptional regulator Transcription 46578647 Common - transcriptional regulator cII, putative DVU0230 2 None None None 46579759 Common xseB exodeoxyribonuclease VII, small subunit DVU1348 34 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 46578855 Common - YCII-related domain protein DVU0439 36 COG2350 COG2350, Uncharacterized protein conserved in bacteria Function unknown 46580609 Common tnaA tryptophanase DVU2204 44 COG3033 TnaA, Tryptophanase Amino acid transport and metabolism 46579639 Common tpX thiol peroxidase DVU1228 116 COG2077 Tpx, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 46580866 Common - oligopeptide ABC transporter, permease protein DVU2462 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 46580389 Nonpathogen - hypothetical protein DVU1980 1 None None None 46578523 Common glnP glutamine ABC transporter, permease protein DVU0106 174 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 46580862 Nonpathogen - hypothetical protein DVU2458 1 None None None 46581004 Nonpathogen - hypothetical protein DVU2600 1 None None None 46578425 Nonpathogen - hypothetical protein DVU0008 1 None None None 46578929 Common - FlgA family protein DVU0514 19 COG1261 FlgA, Flagellar basal body P-ring biosynthesis protein Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 46579420 Common cobU cobinamide kinase/cobinamide phosphate guanylyltransferase DVU1007 129 COG2087 CobU, Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase Coenzyme metabolism 46579905 Nonpathogen - hypothetical protein DVU1494 1 None None None 46579813 Common - transcriptional regulator, LysR family DVU1402 163 COG0583 LysR, Transcriptional regulator Transcription 46579849 Common - cobyrinic acid a,c-diamide synthase family protein DVU1438 54 COG0857 Pta, BioD-like N-terminal domain of phosphotransacetylase General function prediction only 46579359 Common - sigma-54 dependent transcriptional regulator/response regulator DVU0946 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46578597 Common modC molybdenum ABC transporter, ATP-binding protein DVU0180 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 46579261 Nonpathogen - heterodisulfide reductase, putative DVU0848 37 COG1148 HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins Energy production and conversion 46581384 Common leuA 2-isopropylmalate synthase DVU2981 212 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 46581110 Common - hypothetical protein DVU2706 25 COG4383 COG4383, Mu-like prophage protein gp29 Function unknown 46578476 Common - AcrB/AcrD/AcrF family protein DVU0059 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 46580811 Nonpathogen - hypothetical protein DVU2406 1 None None None 46579817 Common purM phosphoribosylaminoimidazole synthetase DVU1406 232 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 46580413 Nonpathogen - hypothetical protein DVU2005 1 None None None 46580788 Common - tonB dependent receptor domain protein DVU2383 14 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 46580298 Common gmhA phosphoheptose isomerase DVU1889 123 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 46580085 Nonpathogen - hypothetical protein DVU1675 1 None None None 46580265 Nonpathogen - hypothetical protein DVU1856 1 None None None 46578755 Common - D-isomer specific 2-hydroxyacid dehydrogenase family protein DVU0339 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 46580757 Common - glycosyl transferase, group 2 family protein DVU2352 15 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 46579520 Common - tail tape measure protein DVU1107 28 COG5283 COG5283, Phage-related tail protein Function unknown 46579988 Common hslV ATP-dependent protease peptidase subunit DVU1577 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 46578540 Common - hypothetical protein DVU0123 121 COG2855 COG2855, Predicted membrane protein Function unknown 46581594 Common - glycosyl transferase, group 1 family protein DVU3192 220 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46580076 Common efp translation elongation factor P DVU1666 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 46578839 Common - universal stress protein family DVU0423 78 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 46581607 Common - transglycosylase SLT domain protein DVU3205 120 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 46579604 Common radC DNA repair protein RadC DVU1193 178 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 46579320 Common - hypothetical protein DVU0907 22 COG5459 COG5459, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 46580014 Common aat leucyl/phenylalanyl-tRNA--protein transferase DVU1603 134 COG2360 Aat, Leu/Phe-tRNA-protein transferase Posttranslational modification, protein turnover, chaperones 46579947 Common - transglycosylase, SLT family DVU1536 155 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 46581552 Common rpsA 30S ribosomal protein S1 DVU3150 242 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 46580598 Nonpathogen - hypothetical protein DVU2193 1 None None None 46580053 Nonpathogen - hypothetical protein DVU1642 1 None None None 46580290 Common - phoH family protein DVU1881 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 46578635 Common - tail protein, putative DVU0218 21 COG3299 XkdT, Uncharacterized homolog of phage Mu protein gp47 Function unknown 46579904 Nonpathogen - hypothetical protein DVU1493 1 None None None 46578897 Common rfaD ADP-L-glycero-D-mannoheptose-6-epimerase DVU0481 226 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 46578446 Common - hydantoinase/oxoprolinase family protein DVU0029 102 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 46579293 Nonpathogen - hypothetical protein DVU0880 1 None None None 46578576 Common - thioesterase family protein DVU0159 137 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 46580655 Common - AMP-binding protein DVU2250 223 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 46581419 Common - B12 binding domain protein/radical SAM domain protein DVU3016 78 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 46578437 Nonpathogen - hypothetical protein DVU0020 1 None None None 46581198 Common - electron transport complex protein RnfG, putative DVU2794 41 COG4659 RnfG, Predicted NADH:ubiquinone oxidoreductase, subunit RnfG Energy production and conversion 46580088 Common rimI ribosomal-protein-alanine acetyltransferase DVU1678 147 COG0456 RimI, Acetyltransferases General function prediction only 46579505 Common - sodium-dependent symporter family protein DVU1092 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 46580207 Common ksgA dimethyladenosine transferase DVU1797 246 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 46580874 Common - membrane protein, putaive DVU2470 138 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 46581054 Nonpathogen - hypothetical protein DVU2650 1 None None None 46580519 Common - sigma-54 dependent transcriptional regulator/response regulator DVU2114 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46578475 Common - efflux transporter, RND family, MFP subunit DVU0058 128 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 46579553 Common - bacteriophage transposase A protein, putative DVU1140 26 None None None 46579884 Nonpathogen - hypothetical protein DVU1473 1 None None None 46581218 Nonpathogen - hypothetical protein DVU2814 1 None None None 46579114 Common glcB malate synthase G DVU0701 75 COG2225 AceB, Malate synthase Energy production and conversion 46578482 Nonpathogen - hypothetical protein DVU0065 1 None None None 46580741 Common - carboxyl-terminal protease DVU2336 184 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 46579065 Nonpathogen - hypothetical protein DVU0651 4 COG3366 COG3366, Uncharacterized protein conserved in archaea Function unknown 46579776 Common - heme-binding protein, putative DVU1365 24 COG4822 CbiK, Cobalamin biosynthesis protein CbiK, Co2+ chelatase Coenzyme metabolism 46579444 Nonpathogen - hypothetical protein DVU1031 1 None None None 46580159 Nonpathogen - hypothetical protein DVU1749 1 None None None 46581630 Common cheY-3 chemotaxis protein CheY DVU3228 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46579176 Common - GGDEF domain protein DVU0763 152 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 46578905 Common paaK-1 phenylacetate-coenzyme A ligase DVU0489 111 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 46581557 Common dcrH methyl-accepting chemotaxis protein DcrH DVU3155 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46580113 Common - type I restriction-modification enzyme, R subunit DVU1703 135 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 46579910 Nonpathogen - hypothetical protein DVU1499 1 None None None 46581083 Common - sensory box histidine kinase/response regulator DVU2679 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46578867 Common - chloride channel family protein DVU0451 163 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 46580050 Common - hypothetical protein DVU1639 9 None None None 46579871 Nonpathogen - hypothetical protein DVU1460 4 None None None 46580752 Common argD acetylornithine aminotransferase DVU2347 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 46581578 Common - UDP-glucose/GDP-mannose dehydrogenase family protein DVU3176 206 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 46581393 Common moeA molybdopterin biosynthesis MoeA protein DVU2990 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 46579475 Common - hypothetical protein DVU1062 68 COG1691 COG1691, NCAIR mutase (PurE)-related proteins General function prediction only 46581426 Common - sigma-54 dependent DNA-binding response regulator DVU3023 220 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46581528 Common - lipoprotein, putative DVU3125 24 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 46581226 Common - TRAP transporter solute receptor DctP DVU2822 104 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 46581262 Common - tail tube protein, putative DVU2858 10 None None None 46580759 Common - glycosyl transferase, group 2 family protein DVU2354 167 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 46580705 Nonpathogen - hypothetical protein DVU2300 1 None None None 46581412 Common - radical SAM domain protein DVU3009 14 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 46579150 Common - sensory box histidine kinase DVU0737 189 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 46578664 Common - response regulator DVU0247 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46581449 Common - glycosyl transferase, group 1 family protein DVU3046 56 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46581148 Common - high-affinity branched-chain amino acid ABC transporter, perisplasmic amino acid binding protein DVU2744 139 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 46580761 Common - hypothetical protein DVU2356 27 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 46579898 Common - hypothetical protein DVU1487 2 None None None 46580350 Common - HAD-superfamily hydrolase, subfamily IIA DVU1941 95 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 46579788 Common ilvN-2 acetolactate synthase, small subunit DVU1377 193 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 46579289 Common - metallo-beta-lactamase family protein DVU0876 156 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 46580250 Common fbp fructose-1,6-bisphosphatase DVU1841 108 COG0158 Fbp, Fructose-1,6-bisphosphatase Carbohydrate transport and metabolism 46578738 Common eno enolase DVU0322 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 46580300 Common - hypothetical protein DVU1891 50 COG3222 COG3222, Uncharacterized protein conserved in bacteria Function unknown 46579825 Common - sensory box/GGDEF domain/EAL domain protein DVU1414 184 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 46579973 Common - HAMP domain protein DVU1562 116 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 46580607 Common - transglycosylase SLT domain/bacterial extracellular solute-binding domain protein DVU2202 138 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 46579919 Common - hypothetical protein DVU1508 15 None None None 46579252 Common rpsP 30S ribosomal protein S16 DVU0839 213 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 46580959 Common - MATE efflux family protein DVU2555 84 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 46581180 Common dsvC dissimilatory sulfite reductase, gamma subunit DVU2776 58 COG2920 DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit Inorganic ion transport and metabolism 46580227 Common cyf cytochrome c-553 DVU1817 21 COG2863 COG2863, Cytochrome c553 Energy production and conversion 46580181 Common hydC [Fe] hydrogenase gamma DVU1771 178 COG4624 COG4624, Iron only hydrogenase large subunit, C-terminal domain General function prediction only 46578994 Common moaA molybdenum cofactor biosynthesis protein A DVU0580 204 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 46579187 Common atpC ATP synthase, F1 epsilon subunit DVU0774 194 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 46580512 Nonpathogen - hypothetical protein DVU2107 1 COG1433 COG1433, Uncharacterized conserved protein Function unknown 46579584 Common mviN-1 integral membrane protein MviN DVU1173 171 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 46579417 Common - hypothetical protein DVU1004 142 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 46581335 Common - sensory box histidine kinase DVU2931 219 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 46579306 Common - universal stress protein family DVU0893 21 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 46578937 Common - flagellar assembly protein FliW DVU0522 37 COG1699 COG1699, Uncharacterized protein conserved in bacteria Function unknown 46581187 Common - hypothetical protein DVU2783 87 COG0730 COG0730, Predicted permeases General function prediction only 46579893 Nonpathogen - hypothetical protein DVU1482 1 None None None 46581174 Common - response regulator DVU2770 214 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46579627 Nonpathogen - hypothetical protein DVU1216 1 None None None 46580668 Common - outer membrane autotransporter barrel domain protein DVU2263 6 None None None 46580791 Common - ABC transporter, permease protein DVU2386 220 COG4239 COG4239, ABC-type uncharacterized transport system, permease component General function prediction only 46580896 Common trpF-2 N-(5'-phosphoribosyl)anthranilate isomerase DVU2492 154 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 46580838 Nonpathogen - hypothetical protein DVU2433 1 None None None 46581370 Common - sensor histidine kinase/response regulator DVU2967 221 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46579642 Common amt ammonium transporter DVU1231 201 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 46579023 Common - lipoprotein, putative DVU0609 21 COG3218 COG3218, ABC-type uncharacterized transport system, auxiliary component General function prediction only 46579220 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase DVU0807 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 46580893 Nonpathogen - hypothetical protein DVU2489 1 None None None 46579890 Common - hypothetical protein DVU1479 17 COG1533 SplB, DNA repair photolyase DNA replication, recombination, and repair 46579192 Common - ATP synthase F0, B subunit, putative DVU0779 54 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 46578815 Nonpathogen - hypothetical protein DVU0399 1 None None None 46578804 Common - amino acid ABC transporter, ATP-binding protein DVU0388 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 46579857 Common - heptosyltransferase family protein DVU1446 40 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 46581614 Common - pyridine nucleotide-disulfide oxidoreductase DVU3212 245 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 46578924 Nonpathogen - hypothetical protein DVU0509 6 COG2740 COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination Transcription 46579276 Common - flagellar hook-associated protein 2, putative DVU0863 81 COG1345 FliD, Flagellar capping protein Cell motility and secretion 46580633 Common - motB protein, putative DVU2228 99 COG1360 MotB, Flagellar motor protein Cell motility and secretion 46580829 Common - hypothetical protein DVU2424 11 COG2510 COG2510, Predicted membrane protein Function unknown 46581755 Nonpathogen - hypothetical protein DVU3354 1 None None None 46578954 Common - sigma-54 dependent DNA-binding response regulator DVU0539 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46579876 Common - CgeB family protein DVU1465 21 COG4641 COG4641, Uncharacterized protein conserved in bacteria Function unknown 46580098 Common - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative DVU1688 70 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 46581285 Common - phage/plasmid primase, P4 family DVU2881 47 COG3378 COG3378, Predicted ATPase General function prediction only 46579053 Common pomB chemotaxis protein PomB DVU0639 119 COG1360 MotB, Flagellar motor protein Cell motility and secretion 46578615 Common - minor capsid protein C, degenerate DVU0198 181 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 46578556 Common - sensor histidine kinase DVU0139 222 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46579269 Common hemB delta-aminolevulinic acid dehydratase DVU0856 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 46579732 Common rpmD 50S ribosomal protein L30 DVU1321 62 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 46581499 Nonpathogen - hypothetical protein DVU3096 1 None None None 46581700 Common - hypothetical protein DVU3299 35 COG0730 COG0730, Predicted permeases General function prediction only 46578932 Common - peptidase, M23/M37 family DVU0517 190 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 46580383 Common - pyridine nucleotide-disulfide oxidoreductase DVU1974 133 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 46578463 Common fliN flagellar motor switch protein FliN DVU0046 124 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 46581044 Nonpathogen - hypothetical protein DVU2640 1 None None None 46581744 Nonpathogen - hypothetical protein DVU3343 1 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 46579661 Common gidB methyltransferase GidB DVU1250 31 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 46581039 Common - glycosyl transferase, group 1 family protein DVU2635 123 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46580395 Common - hypothetical protein DVU1986 5 COG1416 COG1416, Uncharacterized conserved protein Function unknown 46580824 Nonpathogen - hypothetical protein DVU2419 1 None None None 46580311 Common - hypothetical protein DVU1902 10 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 46580925 Common aroK shikimate kinase DVU2521 194 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 46581103 Common - transglycosylase SLT domain protein DVU2699 14 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 46578745 Nonpathogen - hypothetical protein DVU0329 1 None None None 46579376 Common - 7-cyano-7-deazaguanine reductase DVU0963 118 COG0780 COG0780, Enzyme related to GTP cyclohydrolase I General function prediction only 46578969 Common - NAD-dependent epimerase/dehydratase family protein DVU0554 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 46579679 Nonpathogen - hypothetical protein DVU1268 2 None None None 46581024 Common - hypothetical protein DVU2620 35 COG4188 COG4188, Predicted dienelactone hydrolase General function prediction only 46581750 Common - 2-ketoisovalerate ferredoxin reductase DVU3349 114 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 46580329 Nonpathogen - hypothetical protein DVU1920 1 None None None 46578607 Nonpathogen - hypothetical protein DVU0190 1 None None None 46578445 Common csaA chaperone CsaA DVU0028 67 COG0073 ARC1, EMAP domain General function prediction only 46581292 Common - cobalt ABC transporter, ATP-binding protein, putative DVU2888 202 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 46578730 Common fliE flagellar basal body component FliE DVU0314 59 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 46580676 Common - pyruvate formate-lyase activating enzyme, putative DVU2271 85 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 46580307 Common glyQ glycyl-tRNA synthetase subunit alpha DVU1898 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 46578569 Common - phosphoenolpyruvate synthase-related protein DVU0152 178 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 46578521 Common - cation ABC transporter, permease protein, putative DVU0104 89 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 46581508 Nonpathogen - hypothetical protein DVU3105 1 None None None 46579507 Common argH argininosuccinate lyase DVU1094 223 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 46581247 Common - DNA mismatch endonuclease Vsr, putative DVU2843 71 COG3727 Vsr, DNA G:T-mismatch repair endonuclease DNA replication, recombination, and repair 46579173 Common - hypothetical protein DVU0760 2 None None None 46578813 Common - rare lipoprotein A, putative DVU0397 136 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 46579116 Common lepA GTP-binding protein LepA DVU0703 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 46579827 Nonpathogen - hypothetical protein DVU1416 1 None None None 46579522 Common - ATPase domain protein DVU1109 28 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 46581728 Nonpathogen - hypothetical protein DVU3328 1 None None None 46579440 Nonpathogen - hypothetical protein DVU1027 1 None None None 46580369 Common cheA-2 chemotaxis protein CheA DVU1960 151 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 46580286 Common - polysaccharide deacetylase family protein DVU1877 73 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 46580143 Nonpathogen - hypothetical protein DVU1733 1 None None None 46580451 Nonpathogen - hypothetical protein DVU2044 1 None None None 46581605 Common - DNA polymerase III, delta prime subunit, putative DVU3203 208 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 46579594 Common - HD domain protein DVU1183 61 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 46578727 Common - flagellar assembly protein FliH, putative DVU0311 12 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 46578979 Common gap-1 glyceraldehyde 3-phosphate dehydrogenase DVU0565 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 46581762 Common - ADP-heptose synthase, putative DVU3361 115 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 46580916 Common mraW S-adenosyl-methyltransferase MraW DVU2512 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 46578873 Common - EAL domain protein DVU0457 150 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 46581133 Common - tail protein, putative DVU2729 19 COG3778 COG3778, Uncharacterized protein conserved in bacteria Function unknown 46581546 Common - cytochrome c family protein DVU3144 19 None None None 46579694 Common galU UTP-glucose-1-phosphate uridylyltransferase DVU1283 232 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 46579704 Nonpathogen - hypothetical protein DVU1293 1 None None None 46578518 Common - methlytransferase, UbiE/COQ5 family DVU0101 135 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 46581075 Common - HDIG/HD/KH domain protein DVU2671 77 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 46579315 Common - TPR domain protein DVU0902 25 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 46581196 Common - electron transport complex protein RnfC, putative DVU2792 70 COG4656 RnfC, Predicted NADH:ubiquinone oxidoreductase, subunit RnfC Energy production and conversion 46578747 Common - sensory box histidine kinase, putative DVU0331 206 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46579611 Common ribE riboflavin synthase subunit alpha DVU1200 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 46579823 Common - glycerate dehydrogenase DVU1412 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 46579481 Common - branched-chain amino acid ABC transporter, permease protein DVU1068 107 COG4603 COG4603, ABC-type uncharacterized transport system, permease component General function prediction only 46578694 Common - glyoxalase family protein DVU0278 56 COG3607 COG3607, Predicted lactoylglutathione lyase General function prediction only 46580187 Common cynT carbonic anhydrase DVU1777 152 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 46581096 Nonpathogen - hypothetical protein DVU2692 1 None None None 46581404 Nonpathogen - hypothetical protein DVU3001 2 COG3220 COG3220, Uncharacterized protein conserved in bacteria Function unknown 46578503 Nonpathogen - hypothetical protein DVU0086 1 None None None 46581586 Common - rubredoxin DVU3184 122 COG1773 COG1773, Rubredoxin Energy production and conversion 46580641 Nonpathogen - hypothetical protein DVU2236 1 None None None 46580933 Common pgk phosphoglycerate kinase DVU2529 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 46580948 Common - iron-sulfur cluster-binding protein DVU2544 37 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 46581785 Common zraP zinc resistance-associated protein DVU3384 4 None None None 46580700 Common - methyl-accepting chemotaxis protein DVU2295 141 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46581707 Common ubiX 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DVU3307 152 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 46580689 Nonpathogen - hypothetical protein DVU2284 1 None None None 46581320 Common hemK hemK protein DVU2916 218 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 46580943 Nonpathogen - hypothetical protein DVU2539 1 None None None 46581206 Common - transcriptional regulator, GntR family DVU2802 99 COG2186 FadR, Transcriptional regulators Transcription 46580650 Common - mutT/nudix family protein DVU2245 67 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 46580789 Common - ABC transporter, periplasmic substrate-binding protein DVU2384 152 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 46581156 Common - rhodanese-like domain protein DVU2752 14 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 46578703 Nonpathogen - hypothetical protein DVU0287 1 None None None 46581518 Nonpathogen - hypothetical protein DVU3115 1 None None None 46580067 Nonpathogen - hypothetical protein DVU1657 1 None None None 46580136 Nonpathogen - hypothetical protein DVU1726 1 None None None 46578781 Common - hypothetical protein DVU0365 176 COG1496 COG1496, Uncharacterized conserved protein Function unknown 46579382 Common - efflux protein, LysE family DVU0969 113 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 46579058 Nonpathogen - hypothetical protein DVU0644 1 None None None 46581492 Common - hypothetical protein DVU3089 2 None None None 46581644 Common rpoZ DNA-directed RNA polymerase, omega subunit DVU3242 103 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 46578789 Common - CoA-binding domain protein DVU0373 138 COG1042 COG1042, Acyl-CoA synthetase (NDP forming) Energy production and conversion 46579993 Common - hypothetical protein DVU1582 2 None None None 46581167 Common - TPR/GGDEF domain protein DVU2763 107 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 46578918 Common pnp polynucleotide phosphorylase/polyadenylase DVU0503 236 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 46580572 Nonpathogen - hypothetical protein DVU2167 1 None None None 46579044 Nonpathogen - hypothetical protein DVU0630 1 None None None 46579092 Nonpathogen - hypothetical protein DVU0678 1 None None None 46581641 Common - PAP2 family protein DVU3239 6 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 46578947 Nonpathogen - hmc operon protein 5 DVU0532 6 COG2181 NarI, Nitrate reductase gamma subunit Energy production and conversion 46579652 Common - hypothetical protein DVU1241 3 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 46579930 Common - transcriptional regulator, putative DVU1519 44 COG2932 COG2932, Predicted transcriptional regulator Transcription 46580996 Nonpathogen - hypothetical protein DVU2592 2 None None None 46581458 Common - ribonuclease, Rne/Rng family DVU3055 186 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 46581348 Common - ErfK/YbiS/YcfS/YnhG family protein DVU2944 27 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 46578821 Common cobB-1 cobyrinic acid a,c-diamide synthase DVU0405 137 COG1797 CobB, Cobyrinic acid a,c-diamide synthase Coenzyme metabolism 46581301 Common - hypothetical protein DVU2897 66 COG1355 COG1355, Predicted dioxygenase General function prediction only 46579468 Common - heptosyltransferase family protein DVU1055 97 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 46580731 Common - hypothetical protein DVU2326 3 None None None 46580026 Common paaK-2 phenylacetate-coenzyme A ligase DVU1615 121 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 46579407 Nonpathogen - hypothetical protein DVU0994 1 None None None 46578940 Common - transcriptional regulator, MarR family DVU0525 70 COG1846 MarR, Transcriptional regulators Transcription 46581793 Common glnA glutamine synthetase, type I DVU3392 230 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 46579859 Common - hypothetical protein DVU1448 26 COG1315 COG1315, Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain DNA replication, recombination, and repair 46578816 Nonpathogen - hypothetical protein DVU0400 3 None None None 46579684 Common - bacterial type II/III secretion system protein DVU1273 135 COG4796 HofQ, Type II secretory pathway, component HofQ Intracellular trafficking and secretion 46580620 Common - RNA-binding protein DVU2215 66 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 46581160 Common - radical SAM domain protein DVU2756 81 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 46581183 Common - hypothetical protein DVU2779 36 COG4134 COG4134, ABC-type uncharacterized transport system, periplasmic component General function prediction only 46580845 Common - heat shock protein, Hsp20 family DVU2441 159 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 46580579 Nonpathogen - hypothetical protein DVU2174 1 None None None 46578633 Common - phage baseplate assembly protein V, putative DVU0216 21 COG4384 COG4384, Mu-like prophage protein gp45 Function unknown 46581649 Common - efflux transporter, RND family, MFP subunit DVU3247 156 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 46580102 Nonpathogen - hypothetical protein DVU1692 2 None None None 46578828 Common - potassium uptake protein TrkA, putative DVU0412 104 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 46581273 Common - major head protein DVU2869 11 None None None 46579146 Common - hypothetical protein DVU0733 3 None None None 46581258 Common - tail protein, putative DVU2854 21 COG4379 COG4379, Mu-like prophage tail protein gpP General function prediction only 46581562 Nonpathogen - hypothetical protein DVU3160 1 None None None 46580692 Common - hydrogenase, CooK subunit, selenocysteine-containing, putative DVU2287 190 COG0650 HyfC, Formate hydrogenlyase subunit 4 Energy production and conversion 46580529 Common - hypothetical protein DVU2124 88 COG2064 TadC, Flp pilus assembly protein TadC Cell motility and secretion / Intracellular trafficking and secretion 46581684 Nonpathogen - hypothetical protein DVU3283 1 None None None 46581126 Common - hypothetical protein DVU2722 18 COG4228 COG4228, Mu-like prophage DNA circulation protein General function prediction only 46578578 Common purF amidophosphoribosyltransferase DVU0161 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 46580058 Nonpathogen - lipoprotein, putative DVU1648 1 None None None 46580408 Common - sulfate transporter family protein DVU1999 76 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 46579371 Common rplI 50S ribosomal protein L9 DVU0958 216 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 46579955 Common - mechanosensitive ion channel family protein DVU1544 227 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 46581463 Nonpathogen - hypothetical protein DVU3060 1 None None None 46580241 Nonpathogen - hypothetical protein DVU1832 1 None None None 46579862 Common - response regulator DVU1451 112 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 46581085 Nonpathogen - hypothetical protein DVU2681 1 None None None 46581312 Nonpathogen - hypothetical protein DVU2908 2 None None None 46579015 Common - phenylacetic acid degradation protein PaaI DVU0601 48 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 46581706 Nonpathogen - hypothetical protein DVU3306 1 None None None 46579101 Common - aldehyde:ferredoxin oxidoreductase, tungsten-containing, putative DVU0687 58 COG2414 COG2414, Aldehyde:ferredoxin oxidoreductase Energy production and conversion 46579576 Common - pyridine nucleotide-disulfide oxidoreductase DVU1165 173 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 46581432 Common pta phosphate acetyltransferase DVU3029 180 COG0280 Pta, Phosphotransacetylase Energy production and conversion 46581554 Common - sensory box histidine kinase DVU3152 224 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 46580261 Common - hypothetical protein DVU1852 19 COG4461 LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein Function unknown 46579085 Nonpathogen - hypothetical protein DVU0671 30 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 46580552 Common - L-serine dehydratase, putative DVU2147 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 46580501 Nonpathogen - hypothetical protein DVU2096 1 None None None 46581364 Nonpathogen - hypothetical protein DVU2961 1 COG1433 COG1433, Uncharacterized conserved protein Function unknown 46580558 Common - tail fiber protein, putative DVU2153 14 COG4733 COG4733, Phage-related protein, tail component Function unknown 46578692 Common - hypothetical protein DVU0276 33 COG3439 COG3439, Uncharacterized conserved protein Function unknown 46578469 Common era GTP-binding protein Era DVU0052 229 COG1159 Era, GTPase General function prediction only 46579873 Common - cytochrome c assembly protein, putative DVU1462 98 COG4137 COG4137, ABC-type uncharacterized transport system, permease component General function prediction only 46580585 Nonpathogen - hypothetical protein DVU2180 1 None None None 46579006 Common cheW-1 chemotaxis protein CheW DVU0592 119 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 46579606 Common - lipoprotein, putative DVU1195 2 None None None 46580375 Nonpathogen - hypothetical protein DVU1966 1 None None None 46581738 Common kdpB K+-transporting ATPase, B subunit DVU3338 232 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism 46578559 Common trpS tryptophanyl-tRNA synthetase DVU0142 249 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 46581796 Common - peptidase, M23/M37 family DVU3395 191 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 46579831 Nonpathogen - Hpt domain protein DVU1420 2 COG2198 ArcB, FOG: HPt domain Signal transduction mechanisms 46580922 Common rplM 50S ribosomal protein L13 DVU2518 234 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 46580715 Common - metallo-beta-lactamase family protein DVU2310 74 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 46580559 Common - tail assembly protein, putative DVU2154 22 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 46578851 Nonpathogen - hypothetical protein DVU0435 1 None None None 46579338 Common rfbA glucose-1-phosphate thymidylyltransferase DVU0925 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 46579333 Common atpI ATP synthase protein I DVU0920 8 COG5336 COG5336, Uncharacterized protein conserved in bacteria Function unknown 46580876 Common - hypothetical protein DVU2472 20 COG1449 COG1449, Alpha-amylase/alpha-mannosidase Carbohydrate transport and metabolism 46580164 Common - hypothetical protein DVU1754 2 None None None 46581635 Common flhB flagellar biosynthesis protein FlhB DVU3233 130 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 46578458 Common - transglycosylase, SLT family DVU0041 165 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 46579796 Nonpathogen - hypothetical protein DVU1385 1 None None None 46580743 Common - DNA repair protein, HhH-GPD family DVU2338 118 COG2231 COG2231, Uncharacterized protein related to Endonuclease III DNA replication, recombination, and repair 46580096 Common - recombination factor protein RarA DVU1686 209 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 46580231 Common - hypothetical protein DVU1821 184 COG0070 GltB, Glutamate synthase domain 3 Amino acid transport and metabolism 46580524 Common - type II/III secretion system protein DVU2119 140 COG4964 CpaC, Flp pilus assembly protein, secretin CpaC Intracellular trafficking and secretion 46580784 Common - peptidase, M16 family, putative DVU2379 194 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 46578672 Common - ATP-dependent RNA helicase, DEAD/DEAH box family DVU0256 201 COG1205 COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster General function prediction only 46578516 Common - TonB domain protein DVU0099 60 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 46580129 Nonpathogen - hypothetical protein DVU1719 1 None None None 46578880 Common - prephenate dehydrogenase DVU0464 115 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 46579201 Common mreC rod shape-determining protein MreC DVU0788 125 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 46578624 Nonpathogen - hypothetical protein DVU0207 1 None None None 46579620 Common rpmF ribosomal protein L32 DVU1209 6 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 46581567 Nonpathogen - hypothetical protein DVU3165 1 COG3481 COG3481, Predicted HD-superfamily hydrolase General function prediction only 46580345 Common - phosphonate ABC transporter, ATP-binding protein DVU1936 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 46578711 Common - amine oxidase, flavin-containing DVU0295 33 COG1232 HemY, Protoporphyrinogen oxidase Coenzyme metabolism 46580735 Common - MRP family protein DVU2330 229 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 46579965 Common - radical SAM domain protein DVU1554 130 COG1964 COG1964, Predicted Fe-S oxidoreductases General function prediction only 46578686 Common - sensory box histidine kinase DVU0270 218 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46580600 Nonpathogen - hypothetical protein DVU2195 1 None None None 46579748 Common lon ATP-dependent protease La DVU1337 211 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 46581534 Common - glycerol-3-phosphate dehydrogenase, FAD-dependent DVU3132 154 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 46579283 Common frr ribosome recycling factor DVU0870 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 46579392 Common - dihydroxyacetone kinase subunit DhaK DVU0979 77 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 46580515 Common - L-lactate permease DVU2110 106 COG1620 LldP, L-lactate permease Energy production and conversion 46579495 Common - 3'- 5' exonuclease domain protein DVU1082 32 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 46581057 Nonpathogen - hypothetical protein DVU2653 1 None None None 46580323 Common - putative alpha-isopropylmalate/homocitrate synthase family transferase DVU1914 195 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 46580667 Nonpathogen - hypothetical protein DVU2262 1 None None None 46578656 Nonpathogen - hypothetical protein DVU0239 1 None None None 46579963 Common - hypothetical protein DVU1552 116 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 46579165 Common - amino acid ABC transporter, amino acid-binding protein DVU0752 181 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46578970 Nonpathogen - hypothetical protein DVU0555 1 None None None 46580337 Common lspA lipoprotein signal peptidase DVU1928 192 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 46580191 Common - hypothetical protein DVU1781 76 COG1556 COG1556, Uncharacterized conserved protein Function unknown 46580648 Common glgB glycogen branching enzyme DVU2243 151 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 46581751 Common - iron-sulfur cluster-binding protein DVU3350 45 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 46578967 Common - hypothetical protein DVU0552 175 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 46580564 Common - hypothetical protein DVU2159 5 None None None 46579153 Common - hypothetical protein DVU0740 18 None None None 46579232 Common - FMN reductase, NADPH-dependent DVU0819 45 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 46580546 Common - nucleic acid-binding protein, putative DVU2141 47 COG3481 COG3481, Predicted HD-superfamily hydrolase General function prediction only 46580436 Common - ISDvu2, transposase OrfA DVU2029 31 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 46579451 Common hisA phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase DVU1038 215 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 46579793 Common - HesB family selenoprotein DVU1382 3 COG0316 IscA, Uncharacterized conserved protein Function unknown 46580256 Common - hypothetical protein DVU1847 231 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 46581236 Nonpathogen - transcriptional regulator cII, putative DVU2832 1 None None None 46581034 Nonpathogen - lipoprotein, putative DVU2630 1 None None None 46579928 Nonpathogen - transcriptional regulator cII, putative DVU1517 1 None None None 46580680 Common - sigma-54 dependent transcriptional regulator DVU2275 168 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 46579433 Common - HD domain/sensory box protein DVU1020 122 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 46580594 Nonpathogen - transcriptional regulator cII, putative DVU2189 1 None None None 46580918 Common pyk pyruvate kinase DVU2514 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 46580195 Common - membrane protein, MarC family DVU1785 148 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 46580179 Common hydA periplasmic [Fe] hydrogenase, large subunit DVU1769 52 COG4624 COG4624, Iron only hydrogenase large subunit, C-terminal domain General function prediction only 46580238 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA DVU1828 193 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 46579196 Nonpathogen - hypothetical protein DVU0783 1 None None None 46580854 Nonpathogen - hypothetical protein DVU2450 1 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 46580772 Common lpxA UDP-N-acetylglucosamine acyltransferase DVU2367 142 COG1043 LpxA, Acyl- acyl carrier protein 46578683 Nonpathogen - hypothetical protein DVU0267 1 None None None 46579138 Common - hypothetical protein DVU0725 105 COG1331 COG1331, Highly conserved protein containing a thioredoxin domain Posttranslational modification, protein turnover, chaperones 46580701 Common mtgA monofunctional biosynthetic peptidoglycan transglycosylase DVU2296 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 46579374 Common - hypothetical protein DVU0961 44 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 46578602 Nonpathogen - hypothetical protein DVU0185 1 None None None 46580728 Common - hypothetical protein DVU2323 2 None None None 46581524 Common - aminotransferase, class V DVU3121 162 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 46578762 Nonpathogen - hypothetical protein DVU0346 5 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 46580981 Common - DNA-binding response regulator, LuxR family DVU2577 208 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 46579913 Common - portal protein, HK97 family DVU1502 64 COG4695 COG4695, Phage-related protein Function unknown 46580987 Common - lipoprotein, putative DVU2583 13 COG4446 COG4446, Uncharacterized protein conserved in bacteria Function unknown 46581059 Common - D-alanyl-D-alanine carboxypeptidase family protein DVU2655 155 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 46578669 Common - oxidoreductase, FAD/iron-sulfur cluster-binding domain protein DVU0253 199 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 46580818 Common - radical SAM domain protein DVU2413 73 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 46580292 Common - hypothetical protein DVU1883 8 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 46578653 Common - site-specific recombinase, phage integrase family DVU0236 60 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 46580012 Common - ATP-dependent Clp protease adaptor protein ClpS DVU1601 122 COG2127 COG2127, Uncharacterized conserved protein Function unknown 46578801 Nonpathogen - hypothetical protein DVU0385 1 None None None 46580657 Common dnaA-2 chromosomal replication initiator protein DnaA DVU2252 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 46579295 Nonpathogen - hypothetical protein DVU0882 1 None None None 46578617 Common - major head protein DVU0200 11 None None None 46580267 Common - cold shock domain protein DVU1858 30 COG1278 CspC, Cold shock proteins Transcription 46578899 Common - DNA mismatch repair protein MutL, putative DVU0483 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 46581788 Common - hypothetical protein DVU3387 5 None None None 46579537 Nonpathogen - hypothetical protein DVU1124 1 None None None 46579737 Common rpsM 30S ribosomal protein S13 DVU1326 246 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 46579945 Common - hypothetical protein DVU1534 64 COG2391 COG2391, Predicted transporter component General function prediction only 46580339 Common - TPR domain protein DVU1930 89 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 46578542 Common - hypothetical protein DVU0125 98 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 46580205 Common hup-3 DNA-binding protein HU DVU1795 214 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 46579063 Common - iron compound ABC transporter, permease protein DVU0649 189 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 46581602 Common recR recombination protein RecR DVU3200 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 46581417 Common - asparagine synthetase, glutamine-hydrolyzing DVU3014 191 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 46578830 Common - NADP-dependent malic enzyme-related protein DVU0414 183 COG0281 SfcA, Malic enzyme Energy production and conversion 46578919 Common rpsO 30S ribosomal protein S15 DVU0504 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 46579068 Common - peptidase, U32 family DVU0654 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 46579087 Nonpathogen - hypothetical protein DVU0673 1 None None None 46578426 Common - TRAP transporter, DctM subunit DVU0009 121 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 46579696 Common - response regulator DVU1285 32 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46579280 Common - aromatic amino acid decarboxylase, putative DVU0867 119 COG0076 GadB, Glutamate decarboxylase and related PLP-dependent proteins Amino acid transport and metabolism 46580327 Common hysA periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing DVU1918 103 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 46581679 Nonpathogen - hypothetical protein DVU3277 1 None None None 46579155 Nonpathogen - hypothetical protein DVU0742 3 None None None 46579352 Nonpathogen - hypothetical protein DVU0939 1 None None None 46578609 Common - adenine specific DNA methyltransferase, putative DVU0192 88 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 46580157 Common - ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein DVU1747 52 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46581289 Common - alcohol dehydrogenase, iron-containing DVU2885 170 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 46580596 Nonpathogen - hypothetical protein DVU2191 1 None None None 46579036 Common - sensor histidine kinase/response regulator DVU0622 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46578538 Nonpathogen - hypothetical protein DVU0121 4 None None None 46579480 Common - membrane protein, Bmp family DVU1067 100 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 46580833 Common - lipoprotein, putative DVU2428 9 COG3133 SlyB, Outer membrane lipoprotein Cell envelope biogenesis, outer membrane 46579416 Common - dnaJ domain protein DVU1003 121 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 46581359 Common - sigma-54 dependent transcriptional regulator DVU2956 174 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 46581391 Common pspA phage shock protein A DVU2988 53 COG1842 PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription Transcription / Signal transduction mechanisms 46578596 Common - molybdenum-pterin binding domain protein/site-specific recombinase, phage integrase family DVU0179 31 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 46578708 Common - hypothetical protein DVU0292 5 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 46581280 Common - terminase, large subunit, putative DVU2876 36 COG5525 COG5525, Bacteriophage tail assembly protein General function prediction only 46578498 Common - sensory box histidine kinase/response regulator DVU0081 211 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 46581216 Common fdnG-3 formate dehydrogenase, alpha subunit, selenocysteine-containing DVU2812 183 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 46581274 Common - hypothetical protein DVU2870 8 None None None 46579771 Common galE UDP-glucose 4-epimerase DVU1360 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 46580674 Nonpathogen - hypothetical protein DVU2269 1 None None None 46578753 Common - hypothetical protein DVU0337 3 None None None 46579399 Nonpathogen - hypothetical protein DVU0986 1 None None None 46581362 Nonpathogen - hypothetical protein DVU2959 5 None None None 46579682 Common - general secretion pathway protein F, putative DVU1271 141 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 46581078 Common - succinate dehydrogenase and fumarate reductase iron-sulfur protein DVU2674 205 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 46579453 Common hisB imidazoleglycerol-phosphate dehydratase DVU1040 213 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 46581774 Common ilvD dihydroxy-acid dehydratase DVU3373 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 46580453 Nonpathogen - hypothetical protein DVU2046 1 None None None 46579008 Common iciA chromosome replication initiation inhibitor protein DVU0594 97 COG0583 LysR, Transcriptional regulator Transcription 46580503 Common cooS carbon monoxide dehydrogenase DVU2098 41 COG1151 COG1151, 6Fe-6S prismane cluster-containing protein Energy production and conversion 46581352 Common - bacterial flagellin N-terminal domain protein DVU2948 18 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 46581526 Common - HD domain protein DVU3123 121 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 46581117 Common - hypothetical protein DVU2713 7 COG4387 COG4387, Mu-like prophage protein gp36 Function unknown 46579674 Common pppA type IV prepilin-like proteins leader peptidase DVU1263 128 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 46581060 Nonpathogen - hypothetical protein DVU2656 1 None None None 46578662 Common - protein phosphatase, putative DVU0245 23 COG2453 CDC14, Predicted protein-tyrosine phosphatase Signal transduction mechanisms 46578618 Nonpathogen - hypothetical protein DVU0201 1 None None None 46579570 Nonpathogen - hypothetical protein DVU1159 1 None None None 46578554 Nonpathogen - hypothetical protein DVU0137 1 None None None 46580446 Nonpathogen - hypothetical protein DVU2039 1 None None None 46580957 Common - NifU family protein DVU2553 125 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 46580004 Common cheY-1 chemotaxis protein CheY DVU1593 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 46580362 Common proA gamma-glutamyl phosphate reductase DVU1953 189 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 46578645 Nonpathogen - hypothetical protein DVU0228 1 None None None 46580475 Common - TPR domain protein DVU2070 88 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 46579229 Common cobQ cobyric acid synthase CobQ DVU0816 150 COG1492 CobQ, Cobyric acid synthase Coenzyme metabolism 46579657 Common - hypothetical protein DVU1246 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 46578716 Common - radical SAM domain protein DVU0300 64 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 46579403 Common - endonuclease III, putative DVU0990 239 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 46580864 Common - hypothetical protein DVU2460 12 None None None 46578842 Common - chromate transport family protein DVU0426 115 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 46578566 Common - hypothetical protein DVU0149 39 COG0730 COG0730, Predicted permeases General function prediction only 46579326 Common - hypothetical protein DVU0913 5 COG2882 FliJ, Flagellar biosynthesis chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 46578865 Common - sensor/response regulator DVU0449 225 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 46579422 Nonpathogen - hypothetical protein DVU1009 1 None None None 46580185 Common ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase DVU1775 229 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 161343882 Common - hydroxylamine reductase DVU2543 74 COG1151 COG1151, 6Fe-6S prismane cluster-containing protein Energy production and conversion 46579811 Common - methyl-accepting chemotaxis protein DVU1400 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46580616 Common - hypothetical protein DVU2211 2 None None None 46581172 Common - comF family protein DVU2768 149 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 46581018 Common - hypothetical protein DVU2614 12 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 46579971 Common - molybdopterin biosynthesis protein, putative DVU1560 66 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 46580468 Common - hypothetical protein DVU2063 31 COG3893 COG3893, Inactivated superfamily I helicase DNA replication, recombination, and repair 46581179 Nonpathogen - hypothetical protein DVU2775 1 None None None 46581283 Nonpathogen - hypothetical protein DVU2879 5 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 46579267 Common - NirD protein, putative DVU0854 48 COG1522 Lrp, Transcriptional regulators Transcription 46581511 Common nhaC-2 Na+/H+ antiporter NhaC DVU3108 57 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 46579194 Nonpathogen - hypothetical protein DVU0781 1 None None None 46580385 Common groEL chaperonin GroEL DVU1976 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 46579902 Nonpathogen - hypothetical protein DVU1491 1 None None None 46581757 Common - NAD-dependent epimerase/dehydratase family protein DVU3356 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 46578802 Common - amino acid ABC transporter, periplasmic amino acid-binding protein DVU0386 178 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46580461 Nonpathogen - hypothetical protein DVU2056 1 None None None 46580141 Nonpathogen - hypothetical protein DVU1731 1 None None None 46579554 Nonpathogen - hypothetical protein DVU1141 1 None None None 46580775 Common - outer membrane protein OmpH, putative DVU2370 12 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 46581116 Nonpathogen - hypothetical protein DVU2712 1 COG5373 COG5373, Predicted membrane protein Function unknown 46579524 Common - hypothetical protein DVU1111 3 None None None 46579734 Common secY preprotein translocase subunit SecY DVU1323 249 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 46579213 Nonpathogen - hypothetical protein DVU0800 1 None None None 46579635 Common nfo endonuclease IV DVU1224 102 COG0648 Nfo, Endonuclease IV DNA replication, recombination, and repair 46579637 Nonpathogen - hypothetical protein DVU1226 1 None None None 46578484 Nonpathogen - hypothetical protein DVU0067 1 None None None 46579018 Nonpathogen - hypothetical protein DVU0604 1 None None None 46579757 Common xseA exodeoxyribonuclease VII, large subunit DVU1346 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 46580270 Common prfB peptide chain release factor 2, programmed frameshift DVU1861 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 46581746 Nonpathogen - hypothetical protein DVU3345 1 None None None 46578841 Nonpathogen - hypothetical protein DVU0425 4 None None None 46578443 Common - hypothetical protein DVU0026 14 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 46581234 Nonpathogen - hypothetical protein DVU2830 1 None None None 46578581 Common - cation efflux family protein DVU0164 203 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 46580859 Common - NAD-dependent epimerase/dehydratase family protein DVU2455 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 46579896 Nonpathogen - hypothetical protein DVU1485 2 None None None 46580968 Common bioF 8-amino-7-oxononanoate synthase DVU2564 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 46581421 Common - radical SAM domain protein DVU3018 138 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 46581304 Common - amidohydrolase family protein DVU2900 124 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 46578791 Common - Glu/Leu/Phe/Val dehydrogenase family protein DVU0375 159 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 46581022 Nonpathogen - hypothetical protein DVU2618 1 None None None 46581559 Common - hypothetical protein DVU3157 7 None None None 46579878 Common hslU ATP-dependent protease ATP-binding subunit DVU1467 211 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 46580911 Common mraY phospho-N-acetylmuramoyl-pentapeptide-transferase DVU2507 222 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 46578922 Common - hypothetical protein DVU0507 17 COG1550 COG1550, Uncharacterized protein conserved in bacteria Function unknown 46580994 Common - sensory box protein DVU2590 27 COG2461 COG2461, Uncharacterized conserved protein Function unknown 46581440 Common - rhodanese-like domain protein DVU3037 123 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 46579278 Common - membrane-associated zinc metalloprotease, putative DVU0865 210 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 46580104 Common - C4-type zinc finger protein, DksA/TraR family DVU1694 4 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 46580352 Nonpathogen - hypothetical protein DVU1943 1 None None None 46578452 Nonpathogen - hypothetical protein DVU0035 1 None None None 46580052 Common - hypothetical protein DVU1641 10 None None None 46581032 Common - TPR domain protein DVU2628 65 COG0457 NrfG, FOG: TPR repeat General function prediction only 46579518 Nonpathogen - hypothetical protein DVU1105 1 COG3500 COG3500, Phage protein D General function prediction only 46580237 Common - succinyl-diaminopimelate desuccinylase DVU1827 191 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 46579837 Common gcvH glycine cleavage system H protein DVU1426 185 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 46580334 Common - lipase, GDSL family DVU1925 96 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 46579478 Common - peptidyl-prolyl cis-trans isomerse domain protein DVU1065 166 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 46581037 Common - transcriptional regulator, putative DVU2633 30 COG2932 COG2932, Predicted transcriptional regulator Transcription 46578736 Nonpathogen - hypothetical protein DVU0320 1 None None None 46581715 Common pyrK dihydroorotate dehydrogenase, electron transfer subunit DVU3315 58 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 46578491 Common - polysaccharide biosynthesis domain protein DVU0074 22 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 46580024 Common - putative glutamate synthase subunit beta DVU1613 202 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 46580289 Common - hypothetical protein DVU1880 2 None None None 46579725 Common rplX 50S ribosomal protein L24 DVU1314 212 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 46580225 Common - cytochrome c oxidase, subunit I, putative DVU1815 175 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 46578955 Common - sensor histidine kinase DVU0540 222 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46580852 Common panC pantoate--beta-alanine ligase DVU2448 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 46579241 Common smpB SsrA-binding protein DVU0828 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 46580252 Common - hypothetical protein DVU1843 4 None None None 46580627 Common ssb single-strand binding protein DVU2222 214 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 46580884 Nonpathogen - hypothetical protein DVU2480 1 None None None 46580280 Common aspA aspartate ammonia-lyase DVU1871 226 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 46580035 Common kdsA 2-dehydro-3-deoxyphosphooctonate aldolase DVU1624 185 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 46578858 Common - phoH-related protein DVU0442 193 COG1875 COG1875, Predicted ATPase related to phosphate starvation-inducible protein PhoH Signal transduction mechanisms 46580357 Common - hypothetical protein DVU1948 5 None None None 46580707 Common - glutathione-regulated potassium-efflux system protein KefB, putative DVU2302 197 COG4651 RosB, Kef-type K+ transport system, predicted NAD-binding component Inorganic ion transport and metabolism 46581251 Nonpathogen - hypothetical protein DVU2847 1 None None None 46580072 Common - permease, putative DVU1662 66 COG0795 COG0795, Predicted permeases General function prediction only 46579250 Common rimM 16S rRNA processing protein RimM DVU0837 81 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 46580802 Nonpathogen - hypothetical protein DVU2397 1 None None None 46578774 Nonpathogen - hypothetical protein DVU0358 2 COG3510 CmcI, Cephalosporin hydroxylase Defense mechanisms 46579185 Common - hypothetical protein DVU0772 5 None None None 46579579 Nonpathogen - hypothetical protein DVU1168 1 None None None 46580246 Common - competence protein, putative DVU1837 112 COG4105 ComL, DNA uptake lipoprotein General function prediction only 46580574 Common - hypothetical protein DVU2169 9 None None None 46580279 Common - cyclase, putative DVU1870 82 COG1878 COG1878, Predicted metal-dependent hydrolase General function prediction only 46579510 Nonpathogen - hypothetical protein DVU1097 24 COG2122 COG2122, Uncharacterized conserved protein Function unknown 46580514 Common - hypothetical protein DVU2109 230 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 46579939 Common - cytidine/deoxycytidylate deaminase family protein DVU1528 205 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 46579582 Nonpathogen - hypothetical protein DVU1171 1 None None None 46580215 Common - GGDEF domain protein DVU1805 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 46581228 Common - formate acetyltransferase DVU2824 58 COG1882 PflD, Pyruvate-formate lyase Energy production and conversion 46579254 Common - aspartate aminotransferase DVU0841 238 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 46581668 Common - hypothetical protein DVU3266 11 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46580411 Common - transposase, IS5 family, truncation DVU2003 28 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 46581185 Nonpathogen - hypothetical protein DVU2781 1 None None None 46579644 Common - protein-P-II uridylyltransferase, putative DVU1233 123 COG2844 GlnD, UTP:GlnB (protein PII) uridylyltransferase Posttranslational modification, protein turnover, chaperones 46580842 Common - ABC transporter, permease protein DVU2437 159 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 46578996 Common - sensory box histidine kinase DVU0582 222 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46581295 Common nikR nickel responsive regulator DVU2891 67 COG0864 NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain Transcription 46580961 Common birA birA bifunctional protein DVU2557 185 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 46578439 Common - HAMP domain/GGDEF domain/EAL domain protein DVU0022 176 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 46580719 Nonpathogen - hypothetical protein DVU2314 1 None None None 46581410 Common - hypothetical protein DVU3007 3 None None None 46579760 Common - geranylgeranyl diphosphate synthase DVU1349 239 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 46578810 Common - radical SAM domain protein DVU0394 69 COG1243 ELP3, Histone acetyltransferase Transcription / Chromatin structure and dynamics 46580065 Common - aspartate aminotransferase DVU1655 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 46578481 Nonpathogen - hypothetical protein DVU0064 3 None None None 46579894 Nonpathogen - tail fiber assembly protein, putative DVU1483 1 None None None 46581790 Common topA DNA topoisomerase I DVU3389 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 46578451 Common - DSBA-like thioredoxin domain protein DVU0034 119 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 46580898 Common - peptidase, M48 family DVU2494 188 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 46579348 Common - methyl-accepting chemotaxis protein DVU0935 126 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46578741 Common hypD hydrogenase expression/formation protein HypD DVU0325 109 COG0409 HypD, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 46578584 Common - oligopeptide/dipeptide ABC transporter, permease protein DVU0167 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 46579047 Common - penicillin-binding protein DVU0633 202 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 46578889 Nonpathogen - hypothetical protein DVU0473 1 None None None 46580412 Common - ISDvu4, transposase DVU2004 50 None None None 46578965 Common - high-affinity branched-chain amino acid ABC transporter, ATP binding protein DVU0550 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 46580419 Common - ISD1, transposase OrfA DVU2011 54 None None None 46579473 Common - glycosyl transferase, group 1 family protein DVU1060 155 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46580274 Nonpathogen - hypothetical protein DVU1865 1 None None None 46581689 Nonpathogen - hypothetical protein DVU3288 1 None None None 46579285 Common - glycosyl transferase, group 2 family protein DVU0872 101 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 46580872 Common lpxK tetraacyldisaccharide 4'-kinase DVU2468 128 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 46580078 Common - outer membrane lipoprotein carrier protein, putative DVU1668 51 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 46579560 Common - hypothetical protein DVU1148 10 None None None 46580518 Common - xanthine/uracil permease family protein DVU2113 143 COG2252 COG2252, Permeases General function prediction only 46579258 Nonpathogen - hypothetical protein DVU0845 1 None None None 46580774 Common lpxD UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase DVU2369 170 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 46578950 Common - hmc operon protein 2 DVU0535 160 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 46579863 Common dtd D-tyrosyl-tRNA deacylase DVU1452 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 46580019 Common ligA DNA ligase, NAD-dependent DVU1608 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 46580746 Common - amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family DVU2341 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 46578843 Nonpathogen - hypothetical protein DVU0427 1 None None None 46578654 Common serS seryl-tRNA synthetase DVU0237 243 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 46578734 Common - TPR domain protein DVU0318 17 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 46580022 Common - molybdopterin oxidoreductase domain protein DVU1611 176 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 46580704 Common - glycine/betaine/L-proline ABC transporter, ATP binding protein DVU2299 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 46580628 Common - hypothetical protein DVU2223 2 None None None 46580855 Common - L-lactate permease family protein DVU2451 75 COG1620 LldP, L-lactate permease Energy production and conversion 46581015 Nonpathogen - hypothetical protein DVU2611 3 COG5362 COG5362, Phage-related terminase General function prediction only 46581290 Common - transcriptional regulator, AraC family DVU2886 138 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 46579457 Common guaB inosine-5`-monophosphate dehydrogenase DVU1044 241 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 46579942 Common - methyltransferase, putative DVU1531 209 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 46580807 Common hdrA heterodisulfide reductase, A subunit DVU2402 61 COG1148 HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins Energy production and conversion 46578758 Common - NAD-dependent epimerase/dehydratase family protein DVU0342 234 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 46579517 Nonpathogen - baseplate assembly protein, putative DVU1104 2 None None None 46579273 Nonpathogen - hypothetical protein DVU0860 1 None None None 46580506 Common - hypothetical protein DVU2101 89 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 46581080 Nonpathogen - hypothetical protein DVU2676 1 None None None 46580815 Common sodB superoxide dismutase, Fe DVU2410 207 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 46579706 Common sat sulfate adenylyltransferase DVU1295 63 COG2046 MET3, ATP sulfurylase (sulfate adenylyltransferase) Inorganic ion transport and metabolism 46579341 Common rpmA 50S ribosomal protein L27 DVU0928 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 46580243 Common - pyruvate carboxylase DVU1834 236 COG1038 PycA, Pyruvate carboxylase Energy production and conversion 46579502 Common alaS alanyl-tRNA synthetase DVU1089 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 46581268 Nonpathogen - hypothetical protein DVU2864 1 None None None 46579000 Nonpathogen - hypothetical protein DVU0586 1 None None None 46581444 Common - cytochrome c553 DVU3041 10 COG2863 COG2863, Cytochrome c553 Energy production and conversion 46580263 Nonpathogen - hypothetical protein DVU1854 1 None None None 46580463 Common - HDIG domain protein DVU2058 31 COG2316 COG2316, Predicted hydrolase (HD superfamily) General function prediction only 46579901 Common - tail tape measure protein, putative DVU1490 27 COG3941 COG3941, Mu-like prophage protein General function prediction only 46579569 Nonpathogen - hypothetical protein DVU1158 1 None None None 46578982 Common - tRNA 2-selenouridine synthase DVU0568 65 COG2603 COG2603, Predicted ATPase General function prediction only 46581414 Common - hypothetical protein DVU3011 38 None None None 46581135 Common - tail fiber assembly protein, putative DVU2731 5 None None None 46581759 Common - ParA family protein DVU3358 218 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 46580754 Common - carbohydrate phosphorylase family protein DVU2349 149 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 46578606 Common - phage/plasmid primase, P4 family DVU0189 47 COG3378 COG3378, Predicted ATPase General function prediction only 46580592 Nonpathogen - hypothetical protein DVU2187 1 None None None 46579532 Common - virion morphogenesis protein DVU1119 28 COG2369 COG2369, Uncharacterized protein, homolog of phage Mu protein gp30 Function unknown 46579810 Common - ISDvu2, transposase OrfA DVU1399 31 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 46578990 Common msrB methionine sulfoxide reductase B DVU0576 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 46579731 Common rpsE 30S ribosomal protein S5 DVU1320 248 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 46579755 Common ispG 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase DVU1344 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 46579303 Common hom homoserine dehydrogenase DVU0890 217 COG0460 ThrA, Homoserine dehydrogenase Amino acid transport and metabolism 46581281 Nonpathogen - hypothetical protein DVU2877 2 None None None 46580081 Common - ABC transporter, ATP-binding protein/permease protein DVU1671 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 46580153 Nonpathogen - hypothetical protein DVU1743 1 None None None 46580541 Nonpathogen - hypothetical protein DVU2136 1 COG3030 FxsA, Protein affecting phage T7 exclusion by the F plasmid General function prediction only 46579199 Common - penicillin-binding protein DVU0786 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 46581224 Common - amidohydrolase family protein DVU2820 58 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 46581481 Nonpathogen - hypothetical protein DVU3078 1 None None None 46579840 Common - translation-associated GTPase DVU1429 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 46578934 Common - flagellar hook-associated protein FlgK, putative DVU0519 124 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 46579599 Nonpathogen - hypothetical protein DVU1188 1 None None None 46581178 Common - CBS domain protein/ACT domain protein DVU2774 206 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 46578957 Common - universal stress protein family DVU0542 128 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 46581754 Common coaBC phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase DVU3353 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 46580643 Common - RNA methyltransferase, TrmH family DVU2238 164 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 46581176 Common - hypothetical protein DVU2772 64 COG1641 COG1641, Uncharacterized conserved protein Function unknown 46580782 Nonpathogen - hypothetical protein DVU2377 1 None None None 46580725 Common - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein DVU2320 151 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 46581740 Nonpathogen kdpF K+-transporting ATPase, F subunit DVU3339.1 1 None None None 46581442 Common - hypothetical protein DVU3039 11 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46579020 Common - transcriptional regulator, ArsR family/methyltransferase, UbiE/COQ5 family DVU0606 205 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 46578794 Common - thioredoxin, putative DVU0378 5 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 46579589 Nonpathogen - hypothetical protein DVU1178 1 None None None 46581115 Common - major head subunit, putative DVU2711 17 COG4397 COG4397, Mu-like prophage major head subunit gpT General function prediction only 46581333 Common rpoC DNA-directed RNA polymerase, beta prime subunit DVU2929 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 46580353 Common - pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative DVU1944 54 COG1146 COG1146, Ferredoxin Energy production and conversion 46578939 Common - hypothetical protein DVU0524 2 None None None 46580343 Common - phosphonate ABC transporter, permease protein DVU1934 94 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 46580965 Common - oxidoreductase, short chain dehydrogenase/reductase family DVU2561 7 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 46579868 Common - thioredoxin reductase, putative DVU1457 246 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 46581737 Common kdpC K+-transporting ATPase, C subunit DVU3337 95 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 46580180 Common hydB periplasmic [Fe] hydrogenase, small subunit DVU1770 22 None None None 46579882 Common - heat shock protein, Hsp20 family DVU1471 29 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 46580214 Nonpathogen - glycosyl transferase, group 1 family protein DVU1804 3 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46578473 Common cheV-1 chemotaxis protein CheV DVU0056 203 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 46578799 Nonpathogen - hypothetical protein DVU0383 1 None None None 46580125 Common - hypothetical protein DVU1715 6 None None None 46579844 Nonpathogen - hypothetical protein DVU1433 1 None None None 46579071 Common - heat shock protein, Hsp20 family DVU0657 30 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 46579692 Common - hypothetical protein DVU1281 16 None None None 46578713 Nonpathogen - hypothetical protein DVU0297 1 None None None 46580530 Common - TPR domain protein DVU2125 104 COG0457 NrfG, FOG: TPR repeat General function prediction only 46578916 Nonpathogen - hypothetical protein DVU0501 2 None None None 46580303 Nonpathogen - hypothetical protein DVU1894 1 None None None 46581434 Common - hypothetical protein DVU3031 37 COG0857 Pta, BioD-like N-terminal domain of phosphotransacetylase General function prediction only 46580409 Nonpathogen - hypothetical protein DVU2000 1 None None None 46578568 Common - HAMP domain/sigma-54 interaction domain protein DVU0151 170 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46578611 Common - terminase, large subunit, putative DVU0194 36 COG5525 COG5525, Bacteriophage tail assembly protein General function prediction only 46579654 Common - hypothetical protein DVU1243 75 COG2854 Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component Secondary metabolites biosynthesis, transport, and catabolism 46581381 Common - hydrolase, haloacid dehalogenase-like family DVU2978 12 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 46581199 Common - SoxR-reducing system protein RsxE DVU2795 76 COG4660 RnfE, Predicted NADH:ubiquinone oxidoreductase, subunit RnfE Energy production and conversion 46580248 Common trx thioredoxin DVU1839 234 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 46579031 Nonpathogen - hypothetical protein DVU0617 1 None None None 46581512 Common - iron-sulfur cluster-binding protein DVU3109 36 COG1146 COG1146, Ferredoxin Energy production and conversion 46581778 Common dgkA diacylglycerol kinase DVU3377 70 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 46581666 Common - fumarate hydratase DVU3264 148 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 46579038 Common - NapC/NirT cytochrome c family protein DVU0624 39 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 46580567 Nonpathogen - hypothetical protein DVU2162 1 None None None 46581596 Common engA GTP-binding protein EngA DVU3194 224 COG1160 COG1160, Predicted GTPases General function prediction only 46580985 Common - response regulator DVU2581 175 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46580448 Common - hypothetical protein DVU2041 10 None None None 46579472 Common - aminotransferase, putative DVU1059 151 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 46578552 Common - hypothetical protein DVU0135 144 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 46579900 Nonpathogen - hypothetical protein DVU1489 1 None None None 46580295 Common - hypothetical protein DVU1886 12 None None None 46580476 Nonpathogen - hypothetical protein DVU2071 1 None None None 46579372 Common dnaB replicative DNA helicase DVU0959 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 46580032 Nonpathogen - hypothetical protein DVU1621 2 None None None 46581488 Nonpathogen - hypothetical protein DVU3085 1 None None None 46579411 Common - heptosyltransferase family protein DVU0998 61 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 46578768 Common - aminotransferase, DegT/DnrJ/EryC1/StrS family DVU0352 194 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 46581598 Common - twin-arginine translocation pathway signal sequence domain protein DVU3196 15 COG1876 VanY, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 46580953 Nonpathogen - hypothetical protein DVU2549 1 None None None 46581532 Nonpathogen - hypothetical protein DVU3130 1 None None None 46579129 Common - branched-chain amino acid ABC transporter, ATP-binding protein DVU0716 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 46578926 Common - hypothetical protein DVU0511 159 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 46580883 Common - phosphate ABC transporter, permease protein, putative DVU2479 228 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 46581038 Nonpathogen - hypothetical protein DVU2634 1 None None None 46580118 Common - hypothetical protein DVU1708 61 COG3943 COG3943, Virulence protein General function prediction only 46580034 Common pyrG CTP synthetase DVU1623 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 46581495 Nonpathogen - hypothetical protein DVU3092 7 None None None 46579103 Common rnhA ribonuclease HI DVU0689 175 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 46580268 Nonpathogen - hypothetical protein DVU1859 1 None None None 46581603 Common - hypothetical protein DVU3201 5 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46579127 Common - branched-chain amino acid ABC transporter, permease protein DVU0714 152 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 46579551 Nonpathogen - hypothetical protein DVU1138 1 None None None 46579357 Nonpathogen - hypothetical protein DVU0944 1 None None None 46581087 Common - L-lactate permease family protein DVU2683 86 COG1620 LldP, L-lactate permease Energy production and conversion 46579804 Nonpathogen - hypothetical protein DVU1393 1 None None None 46579424 Nonpathogen - hypothetical protein DVU1011 1 None None None 46581211 Nonpathogen - biopolymer transport protein, ExbD/TolR family DVU2807 1 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 46579666 Common - Sua5/YciO/YrdC/YwlC family protein DVU1255 162 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 46579676 Nonpathogen - hypothetical protein DVU1265 1 None None None 46580406 Nonpathogen - hypothetical protein DVU1997 1 None None None 46581286 Common folC folylpolyglutamate synthase DVU2882 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 46578631 Common - tail/DNA circulation protein, putative DVU0214 21 COG4228 COG4228, Mu-like prophage DNA circulation protein General function prediction only 46579061 Common - iron compound ABC transporter, periplasmic iron compount-binding protein, putative DVU0647 134 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 46578557 Common - response regulator DVU0140 36 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46580145 Nonpathogen - hypothetical protein DVU1735 1 COG2929 COG2929, Uncharacterized protein conserved in bacteria Function unknown 46579120 Common dctP TRAP transporter solute receptor DctP DVU0707 103 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 46581556 Common - HAM1 family protein DVU3154 233 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 46579775 Common rfbB dTDP-glucose 4,6-dehydratase DVU1364 232 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 46578456 Common - C4-type zinc finger protein, DksA/TraR family DVU0039 82 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 46579572 Nonpathogen - hypothetical protein DVU1161 1 COG2331 COG2331, Uncharacterized protein conserved in bacteria Function unknown 46579449 Common - hypothetical protein DVU1036 63 COG0398 COG0398, Uncharacterized conserved protein Function unknown 46581786 Nonpathogen - hypothetical protein DVU3385 1 None None None 46579727 Common rpsN 30S ribosomal protein S14 DVU1316 210 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 46581713 Common - transcriptional regulator, LysR family DVU3313 192 COG0583 LysR, Transcriptional regulator Transcription 46580766 Nonpathogen - hypothetical protein DVU2361 1 None None None 46578529 Common - deoxyribodipyrimidine photolyase, putative DVU0112 94 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 46581626 Common sfsA sugar fermentation stimulation protein DVU3224 108 COG1489 SfsA, DNA-binding protein, stimulates sugar fermentation General function prediction only 46581067 Common - hypothetical protein DVU2663 17 COG4087 COG4087, Soluble P-type ATPase General function prediction only 46580955 Common - HD domain protein DVU2551 122 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 46579645 Nonpathogen - hypothetical protein DVU1234 3 COG0730 COG0730, Predicted permeases General function prediction only 46578999 Common - hypothetical protein DVU0585 136 COG1042 COG1042, Acyl-CoA synthetase (NDP forming) Energy production and conversion 46579066 Common cheV-2 chemotaxis protein CheV DVU0652 157 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 46579350 Nonpathogen - hypothetical protein DVU0937 1 None None None 46580377 Common - oxidoreductase, putative DVU1968 102 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 46580834 Nonpathogen - hypothetical protein DVU2429 1 None None None 46579203 Common - radical SAM protein, TIGR01212 family DVU0790 82 COG1242 COG1242, Predicted Fe-S oxidoreductase General function prediction only 46581366 Common - response regulator DVU2963 222 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46578432 Common lgt prolipoprotein diacylglyceryl transferase DVU0015 206 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 46581248 Nonpathogen - hypothetical protein DVU2844 1 None None None 46580189 Nonpathogen - hypothetical protein DVU1779 1 None None None 46580724 Nonpathogen - transcriptional regulator domain protein DVU2319 1 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 46580404 Common - anti-anti-sigma factor DVU1995 68 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 46578868 Nonpathogen - hypothetical protein DVU0452 6 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 46579406 Common - hypothetical protein DVU0993 3 None None None 46579534 Common - hypothetical protein DVU1121 2 None None None 46579558 Nonpathogen - hypothetical protein DVU1145 1 None None None 46578492 Common - aminotransferase, DegT/DnrJ/EryC1/StrS family DVU0075 196 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 46581450 Common - aminotransferase, class IV DVU3047 170 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 46580658 Nonpathogen - hypothetical protein DVU2253 1 None None None 46578588 Common - hemolysin-related protein DVU0171 218 COG1168 MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Amino acid transport and metabolism 46581674 Common - TPR domain protein DVU3272 52 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 46581576 Common ubiE ubiquinone/menaquinone biosynthesis methlytransferase UbiE DVU3174 199 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 46581468 Common - acyl-CoA synthetase DVU3065 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 46580437 Common - ISDvu2, transposase OrfB DVU2030 84 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 46579397 Common miaB tRNA-i(6)A37 modification enzyme MiaB DVU0984 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 46580589 Nonpathogen - DNA-binding domain, excisionase family DVU2184 1 COG3311 AlpA, Predicted transcriptional regulator Transcription 46580928 Nonpathogen - cytochrome c3, putative DVU2524 1 None None None 46579742 Common - transcriptional regulator, LysR family DVU1331 192 COG0583 LysR, Transcriptional regulator Transcription 46578977 Common - ISD1, transposase OrfB DVU0563 119 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 46580172 Common - hypothetical protein DVU1762 43 COG3304 COG3304, Predicted membrane protein Function unknown 46579498 Common phoU phosphate transport system protein PhoU DVU1085 197 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 46579982 Common rho transcription termination factor Rho DVU1571 205 COG1158 Rho, Transcription termination factor Transcription 46579950 Common glpX fructose 1,6-bisphosphatase II DVU1539 112 COG1494 GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins Carbohydrate transport and metabolism 46578718 Common - chemotaxis protein CheX, putative DVU0302 29 COG1406 COG1406, Predicted inhibitor of MCP methylation, homolog of CheC Cell motility and secretion 46580430 Nonpathogen - hypothetical protein DVU2023 3 None None None 46579160 Common - ABC transporter, ATP-binding protein DVU0747 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 46580371 Common - methyl-accepting chemotaxis protein DVU1962 152 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46579270 Common - radical SAM domain protein DVU0857 205 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 46578688 Nonpathogen - hypothetical protein DVU0272 1 None None None 46581521 Common - hypothetical protein DVU3118 20 None None None 46581493 Common - outer membrane protein, OMPP1/FadL/TodX family DVU3090 71 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 46580877 Nonpathogen - hypothetical protein DVU2473 1 None None None 46581269 Nonpathogen - lipoprotein, putative DVU2865 1 None None None 46578660 Common - lipoprotein, putative DVU0243 20 None None None 46581150 Common - hypothetical protein DVU2746 4 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 46579647 Common - amino acid ABC transporter, ATP-binding protein DVU1236 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 46581307 Common - HD domain protein DVU2903 59 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 46578884 Common trpC indole-3-glycerol phosphate synthase DVU0468 218 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 46579968 Nonpathogen - hypothetical protein DVU1557 5 None None None 46579011 Common lytS regulatory protein LytS DVU0597 108 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 46579829 Common - sensory box histidine kinase DVU1418 222 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 46580526 Common - response regulator DVU2121 51 COG4963 CpaE, Flp pilus assembly protein, ATPase CpaE Intracellular trafficking and secretion 46581340 Nonpathogen - hypothetical protein DVU2936 1 None None None 46580333 Common hypC hydrogenase assembly chaperone hypC/hupF DVU1924 54 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 46580888 Common - cytochrome c family protein DVU2484 6 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 46579438 Common upp uracil phosphoribosyltransferase DVU1025 165 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 46580351 Common - DAK2 domain/degV family protein DVU1942 52 COG1461 COG1461, Predicted kinase related to dihydroxyacetone kinase General function prediction only 46579171 Nonpathogen - hypothetical protein DVU0758 1 None None None 46580777 Nonpathogen - hypothetical protein DVU2372 1 None None None 46581574 Nonpathogen - hypothetical protein DVU3172 2 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 46579136 Common purT phosphoribosylglycinamide formyltransferase 2 DVU0723 207 COG0027 PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Nucleotide transport and metabolism 46580535 Nonpathogen - hypothetical protein DVU2130 1 None None None 46579134 Common - sensory box histidine kinase DVU0721 216 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46580360 Common - indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative DVU1951 89 COG4231 COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Energy production and conversion 46580972 Common - peptidase, M20/M25/M40 family DVU2568 172 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 46581237 Nonpathogen - hypothetical protein DVU2833 1 None None None 46579931 Nonpathogen - hypothetical protein DVU1520 1 None None None 46580714 Common - methyl-accepting chemotaxis protein, putative DVU2309 111 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46581543 Nonpathogen - lipoprotein, putative DVU3141 1 None None None 46578571 Nonpathogen - hypothetical protein DVU0154 1 None None None 46579057 Common - thiF protein, putative DVU0643 81 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 46579337 Common rumA 23S rRNA (uracil-5-)-methyltransferase RumA DVU0924 198 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 46579806 Common - C4-type zinc finger protein, DksA/TraR family DVU1395 6 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 46580198 Common rpoD RNA polymerase sigma-70 factor DVU1788 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 46578863 Nonpathogen - hypothetical protein DVU0447 2 COG3162 COG3162, Predicted membrane protein Function unknown 46579076 Common cysE serine O-acetyltransferase DVU0662 190 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 46580795 Common - TonB domain protein DVU2390 23 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 46581378 Common - hydrolase, putative DVU2975 21 COG1988 COG1988, Predicted membrane-bound metal-dependent hydrolases General function prediction only 46579239 Common - glycolate oxidase, iron-sulfur subunit, putative DVU0826 106 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 46579989 Common - TPR domain protein DVU1578 131 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 46580904 Common ftsA cell division protein FtsA DVU2500 186 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 46578822 Common - hypothetical protein DVU0406 173 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 46580694 Common - hydrogenase, CooX subunit, putative DVU2289 81 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 46581253 Common - tail fiber protein, putative DVU2849 19 None None None 46581318 Common prfA peptide chain release factor 1 DVU2914 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 46579574 Common - major facilitator superfamily protein DVU1163 116 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 46580259 Common - CBS domain protein DVU1850 148 COG0517 COG0517, FOG: CBS domain General function prediction only 46581636 Common - flagellar biosynthetic protein FliR DVU3234 129 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 46579029 Nonpathogen - hypothetical protein DVU0615 1 None None None 46578442 Common - sensory box histidine kinase DVU0025 209 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 46580664 Common - hypothetical protein DVU2259 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 46581107 Nonpathogen - hypothetical protein DVU2703 1 None None None 46578504 Common - hypothetical protein DVU0087 7 COG3924 COG3924, Predicted membrane protein Function unknown 46581123 Common - hypothetical protein DVU2719 6 None None None 46580123 Nonpathogen - hypothetical protein DVU1713 1 None None None 46580138 Common - hypothetical protein DVU1728 15 None None None 46580423 Nonpathogen - hypothetical protein DVU2015 1 None None None 46579385 Common - HD domain protein DVU0972 120 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 46580857 Nonpathogen - hypothetical protein DVU2453 1 None None None 46579979 Common - ferritin DVU1568 83 COG1528 Ftn, Ferritin-like protein Inorganic ion transport and metabolism 46579713 Common rpsJ 30S ribosomal protein S10 DVU1302 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 46581731 Nonpathogen - hypothetical protein DVU3331 1 None None None 46579222 Common gatC glutamyl-tRNA(Gln) amidotransferase, C subunit DVU0809 67 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 46581402 Common - methionyl-tRNA formyltransferase, putative DVU2999 225 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 46579470 Common - cobalt ABC transporter, permease protein, putative DVU1057 59 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 46579264 Nonpathogen - hypothetical protein DVU0851 1 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 46580687 Nonpathogen - hypothetical protein DVU2282 9 COG3768 COG3768, Predicted membrane protein Function unknown 46578673 Common - acetyltransferase, GNAT family DVU0257 51 COG0456 RimI, Acetyltransferases General function prediction only 46580582 Nonpathogen - hypothetical protein DVU2177 2 None None None 46581423 Common - hypothetical protein DVU3020 2 None None None 46581048 Common - transcriptional regulator, GntR family DVU2644 135 COG1802 GntR, Transcriptional regulators Transcription 46579797 Common - hypothetical protein DVU1386 53 COG2898 COG2898, Uncharacterized conserved protein Function unknown 46580320 Common - CBS domain protein DVU1911 167 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 46578777 Common - acetolactate synthase 1 regulatory subunit DVU0361 68 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 46579790 Nonpathogen - hypothetical protein DVU1379 1 None None None 46580233 Common - glutamate synthase, iron-sulfur cluster-binding subunit, putative DVU1823 208 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 46581467 Common - sensory box/GGDEF domain/EAL domain protein DVU3064 177 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 46578770 Common - hypothetical protein DVU0354 30 COG3126 COG3126, Uncharacterized protein conserved in bacteria Function unknown 46581624 Common pgi glucose-6-phosphate isomerase DVU3222 210 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 46581611 Nonpathogen - hypothetical protein DVU3209 1 None None None 46578691 Common - polysaccharide deacetylase family protein DVU0275 129 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 46580496 Common thiE-1 thiamine-phosphate pyrophosphorylase DVU2091 208 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 46581618 Common - sensor histidine kinase DVU3216 222 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46578535 Common - sigma-54 dependent transcriptional regulator/response regulator DVU0118 211 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46581192 Common - transcriptional regulator, ArsR family DVU2788 82 COG0640 ArsR, Predicted transcriptional regulators Transcription 46578728 Common fliG flagellar motor switch protein FliG DVU0312 125 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 46580602 Common - site-specific recombinase, phage integrase family DVU2197 198 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 46580881 Common pstS phosphate ABC transporter, periplasmic phosphate-binding protein PstS DVU2477 153 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 46579390 Nonpathogen - hypothetical protein DVU0977 1 None None None 46579991 Common - ribose 5-phosphate isomerase, putative DVU1580 128 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 46578942 Common maF septum formation protein Maf DVU0527 191 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 46580636 Common typA GTP-binding protein TypA DVU2231 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 46578751 Common - 3-deoxy-D-manno-octulosonic-acid transferase, putative DVU0335 112 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 46580338 Nonpathogen - hypothetical protein DVU1929 1 None None None 46581162 Common - hypothetical protein DVU2758 31 COG1427 COG1427, Predicted periplasmic solute-binding protein General function prediction only 46578780 Common pabA para-aminobenzoate/anthranilate synthase glutamine amidotransferase DVU0364 226 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 46581779 Common - YbaK/EbsC protein DVU3378 70 COG2606 EbsC, Uncharacterized conserved protein Function unknown 46578428 Common - TRAP transporter solute receptor DctP DVU0011 95 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 46578852 Common - transcriptional regulator, TetR family DVU0436 77 COG1309 AcrR, Transcriptional regulator Transcription 46579781 Nonpathogen - hypothetical protein DVU1370 1 None None None 46581097 Nonpathogen - hypothetical protein DVU2693 1 None None None 46579243 Common ptsH phosphocarrier protein HPr DVU0830 151 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 46581058 Nonpathogen - hypothetical protein DVU2654 1 None None None 46580486 Nonpathogen - hypothetical protein DVU2081 1 None None None 46579469 Common - cobalt ABC transporter, ATP-binding protein, putative DVU1056 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 46581772 Common metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase DVU3371 139 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 46579765 Nonpathogen - hypothetical protein DVU1354 1 None None None 46581428 Common poR pyruvate-ferredoxin oxidoreductase DVU3025 122 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 46580397 Common - hypothetical protein DVU1988 48 COG1811 COG1811, Uncharacterized membrane protein, possible Na+ channel or pump General function prediction only 46579365 Common - conserved hypothetical protein TIGR00282 DVU0952 81 COG1692 COG1692, Uncharacterized protein conserved in bacteria Function unknown 46581724 Common - ABC transporter, ATP-binding protein DVU3324 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 46579500 Common - hypothetical protein DVU1087 21 COG0391 COG0391, Uncharacterized conserved protein Function unknown 46579623 Common fsxA fxsA protein DVU1212 51 COG3030 FxsA, Protein affecting phage T7 exclusion by the F plasmid General function prediction only 46578721 Common - ferredoxin II DVU0305 17 COG1141 Fer, Ferredoxin Energy production and conversion 46578846 Common - Ech hydrogenase, subunit EchE, putative DVU0430 193 COG3261 HycE, Ni,Fe-hydrogenase III large subunit Energy production and conversion 46581027 Nonpathogen - hypothetical protein DVU2623 1 None None None 46580850 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase DVU2446 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 46580930 Common hynA-2 periplasmic [NiFe] hydrogenase, large subunit, isozyme 2 DVU2526 104 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 46580057 Common lysA-1 diaminopimelate decarboxylase DVU1647 217 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 46580847 Common - hypothetical protein DVU2443 40 COG3647 COG3647, Predicted membrane protein Function unknown 46579311 Common - hypothetical protein DVU0898 137 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 46581409 Common - polysaccharide biosynthesis protein/methyltransferase, putative DVU3006 28 COG1861 SpsF, Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog Cell envelope biogenesis, outer membrane 46578949 Common - hmc operon protein 3 DVU0534 29 COG5557 COG5557, Polysulphide reductase Energy production and conversion 46579180 Common - aminotransferase, class V DVU0767 154 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 46581345 Common - hypothetical protein DVU2941 58 COG2331 COG2331, Uncharacterized protein conserved in bacteria Function unknown 46578515 Common potA putrescine/spermidine ABC transporter ATPase protein DVU0098 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 46581473 Common - hypothetical protein DVU3070 105 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 46579455 Common tatB twin-arginine translocation protein TatB DVU1042 4 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 46581354 Common glnS glutaminyl-tRNA synthetase DVU2951 247 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 46580456 Nonpathogen - hypothetical protein DVU2051 1 None None None 46580392 Nonpathogen - hypothetical protein DVU1983 2 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 46579169 Common - TPR domain protein DVU0756 2 None None None 46579681 Common - twitching motility protein DVU1270 202 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 46579750 Common - lipoprotein, putative DVU1339 14 None None None 46578698 Common mutY A/G-specific adenine glycosylase DVU0282 230 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 46580315 Nonpathogen - hypothetical protein DVU1906 1 None None None 46580614 Common - hypothetical protein DVU2209 21 COG3897 COG3897, Predicted methyltransferase General function prediction only 46578486 Common - hypothetical protein DVU0069 33 COG4717 COG4717, Uncharacterized conserved protein Function unknown 46580844 Nonpathogen - hypothetical protein DVU2440 1 None None None 46581071 Common - phosphate ABC transporter, periplasmic phosphate-binding protein, putative DVU2667 103 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 46578651 Nonpathogen - hypothetical protein DVU0234 1 None None None 46580612 Nonpathogen - hypothetical protein DVU2207 1 None None None 46578788 Common - hypothetical protein DVU0372 6 None None None 46581682 Nonpathogen - hypothetical protein DVU3281 1 None None None 46579202 Common mreB-1 rod shape-determining protein MreB DVU0789 236 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 46580163 Nonpathogen - hypothetical protein DVU1753 1 None None None 46578878 Common - chorismate mutase/prephenate dehydratase DVU0462 212 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 46579613 Common - cytidine/deoxycytidylate deaminase family protein DVU1202 87 COG2131 ComEB, Deoxycytidylate deaminase Nucleotide transport and metabolism 46579880 Common rpsA 30S ribosomal protein S1 DVU1469 217 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 46579929 Nonpathogen - transcriptional regulator cI, truncation DVU1518 1 COG1396 HipB, Predicted transcriptional regulators Transcription 46581763 Common - hypothetical protein DVU3362 28 None None None 46581321 Common lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase DVU2917 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 46580367 Common - sensory box histidine kinase DVU1958 216 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46580441 Common - hypothetical protein DVU2034 2 None None None 46581453 Common - hypothetical protein DVU3050 54 COG3238 COG3238, Uncharacterized protein conserved in bacteria Function unknown 46578636 Common - tail protein, putative DVU0219 19 COG3778 COG3778, Uncharacterized protein conserved in bacteria Function unknown 46579509 Common argF ornithine carbamoyltransferase DVU1096 240 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 46579593 Nonpathogen - hypothetical protein DVU1182 2 None None None 46578895 Common - serine/threonine protein kinase, putative DVU0479 149 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 46579462 Common - ABC transporter, ATP-binding protein DVU1049 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 46581277 Nonpathogen - hypothetical protein DVU2873 1 None None None 46581694 Common - acetolactate synthase DVU3293 222 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 46580688 Nonpathogen - hypothetical protein DVU2283 1 None None None 46578620 Common - hypothetical protein DVU0203 27 COG3926 zliS, Putative secretion activating protein General function prediction only 46581241 Common - hypothetical protein DVU2837 39 COG4748 COG4748, Uncharacterized conserved protein Function unknown 46580979 Common - peptidase, M20/M25/M40 family DVU2575 159 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 46579998 Common - acetyltransferase DVU1587 79 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 46579318 Common lipA lipoyl synthase DVU0905 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 46581502 Common tolQ-2 tolQ protein DVU3099 148 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 46581181 Nonpathogen - hypothetical protein DVU2777 1 None None None 46579958 Common - sensory box protein DVU1547 25 COG2202 AtoS, FOG: PAS/PAC domain Signal transduction mechanisms 46579542 Common - hypothetical protein DVU1129 10 None None None 46579601 Common - sensory box/GGDEF domain/EAL domain protein DVU1190 188 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 46580048 Nonpathogen - hypothetical protein DVU1637 1 None None None 46579402 Common - periplasmic divalent cation tolerance protein cutA, putative DVU0989 119 COG1324 CutA, Uncharacterized protein involved in tolerance to divalent cations Inorganic ion transport and metabolism 46579414 Common - coenzyme A binding protein DVU1001 119 COG1832 COG1832, Predicted CoA-binding protein General function prediction only 46578544 Common - hypothetical protein DVU0127 114 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 46580063 Common - polyA polymerase family protein DVU1653 199 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 46580938 Common pheS phenylalanyl-tRNA synthetase, alpha subunit DVU2534 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 46581655 Common - phenylacetate-coenzyme A ligase, putative DVU3253 110 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 46579142 Nonpathogen - hypothetical protein DVU0729 1 None None None 46579110 Nonpathogen - hypothetical protein DVU0696 1 None None None 46579616 Common acpP acyl carrier protein DVU1205 211 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 46580693 Common - hydrogenase, CooL subunit, putative DVU2288 192 COG3260 COG3260, Ni,Fe-hydrogenase III small subunit Energy production and conversion 46581600 Common - DNA polymerase III, gamma and tau subunits, putative DVU3198 247 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 46580282 Common ppiB-2 peptidyl-prolyl cis-trans isomerase B DVU1873 201 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 46580090 Common suhB inositol-1-monophosphatase DVU1680 197 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 46581266 Nonpathogen - hypothetical protein DVU2862 1 None None None 46581583 Common purL phosphoribosylformylglycinamidine synthase II DVU3181 233 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 46580625 Common - hypothetical protein DVU2220 7 None None None 46581437 Nonpathogen - hypothetical protein DVU3034 1 None None None 46581396 Common - glycosyl transferase, group 1/2 family protein DVU2993 38 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46579608 Common nusB N utilization substance protein B DVU1197 190 COG0781 NusB, Transcription termination factor Transcription 46580322 Common - aspartate kinase, monofunctional class DVU1913 234 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 46579172 Common - peptidase, M29 family DVU0759 55 COG2309 AmpS, Leucyl aminopeptidase (aminopeptidase T) Amino acid transport and metabolism 46579488 Common rnpA ribonuclease P protein component DVU1075 13 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 46581705 Common - sigma-54 dependent transcriptional regulator/response regulator DVU3305 190 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46581194 Nonpathogen - hypothetical protein DVU2790 1 None None None 46579736 Common rpmJ 50S ribosomal protein L36 DVU1325 139 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 46579711 Common fusA-1 elongation factor G DVU1300 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 46578468 Common - conserved hypothetical protein TIGR00044 DVU0051 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 46579119 Common - TRAP transporter, DctQ subunit DVU0706 29 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 46581209 Common - cobalamin synthesis protein/P47K family DVU2805 127 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 46581795 Nonpathogen - hypothetical protein DVU3394 1 None None None 46579922 Nonpathogen - hypothetical protein DVU1511 1 None None None 46581204 Common - heavy metal translocating P-type ATPase DVU2800 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 46579834 Common lpdA 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase DVU1423 238 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 46580923 Common rpsI 30S ribosomal protein S9 DVU2519 248 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 46581239 Nonpathogen - transcriptional regulator, putative DVU2835 1 None None None 46579625 Common - dolichyl-phosphate-mannose-protein mannosyltransferase family protein DVU1214 54 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 46578461 Common fliP flagellar biosynthesis protein FliP DVU0044 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 46579530 Nonpathogen - hypothetical protein DVU1117 1 None None None 46579309 Common - lipoprotein, NLP/P60 family DVU0896 25 None None None 46579379 Common - amino acid ABC transporter, periplasmic amino acid-binding protein DVU0966 183 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46580590 Common - terminase, large subunit, putative DVU2185 37 COG5525 COG5525, Bacteriophage tail assembly protein General function prediction only 46579001 Common fdnG-1 formate dehydrogenase, alpha subunit, selenocysteine-containing DVU0587 183 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 46578488 Common dinP DNA polymerase IV DVU0071 187 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 46580111 Nonpathogen - hypothetical protein DVU1701 1 None None None 46581579 Nonpathogen - hypothetical protein DVU3177 1 None None None 46578861 Common - CBS domain protein DVU0445 88 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 46581089 Nonpathogen - hypothetical protein DVU2685 1 None None None 46581702 Nonpathogen - hypothetical protein DVU3301 1 None None None 46579504 Common - hypothetical protein DVU1091 29 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 46578992 Common - formate dehydrogenase accessory protein FdhD, putative DVU0578 134 COG1526 FdhD, Uncharacterized protein required for formate dehydrogenase activity Energy production and conversion 46580341 Common adk adenylate kinase DVU1932 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 46579861 Nonpathogen - anti-sigma factor, putative DVU1450 1 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 46578465 Common - chemotaxis protein MotB DVU0048 138 COG1360 MotB, Flagellar motor protein Cell motility and secretion 46580234 Common - hypothetical protein DVU1824 44 COG1647 COG1647, Esterase/lipase General function prediction only 46580963 Common bioA adenosylmethionine--8-amino-7-oxononanoate aminotransferase DVU2559 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 46579426 Common - type I secretion outer membrane protein, TolC family DVU1013 112 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 46579097 Common - hflC protein, putative DVU0683 217 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 46580029 Common - iojap-related protein DVU1618 191 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 46578614 Common - phage portal protein, lambda family DVU0197 37 COG5511 COG5511, Bacteriophage capsid protein General function prediction only 46581446 Nonpathogen - hypothetical protein DVU3043 2 None None None 46579664 Nonpathogen - hypothetical protein DVU1253 1 None None None 46581639 Common - phosphoenolpyruvate synthase-related protein DVU3237 125 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 46579275 Common - flagellar protein FliS/hypothetical protein, fusion DVU0862 84 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 46581331 Common rplL 50S ribosomal protein L7/L12 DVU2927 213 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 46580083 Common - acyltransferase, putative DVU1673 128 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 46581012 Common motA-3 flagellar motor protein MotA DVU2608 119 COG1291 MotA, Flagellar motor component Cell motility and secretion 46579914 Common - terminase, large subunit DVU1503 47 COG4626 COG4626, Phage terminase-like protein, large subunit General function prediction only 46579218 Nonpathogen - hypothetical protein DVU0805 2 None None None 46578848 Common - Ech hydrogenase, subunit EchC, putative DVU0432 192 COG3260 COG3260, Ni,Fe-hydrogenase III small subunit Energy production and conversion 46580927 Nonpathogen - lipoprotein, putative DVU2523 1 None None None 46581558 Common glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing) DVU3156 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 46580006 Common cheR-1 chemotaxis protein methyltransferase DVU1595 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 46580756 Nonpathogen - hypothetical protein DVU2351 1 None None None 46579027 Nonpathogen - hypothetical protein DVU0613 1 None None None 46581514 Common - transcriptional regulator, Crp/Fnr family DVU3111 12 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 46580780 Common - lipoprotein releasing system, permease protein DVU2375 215 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 46581662 Nonpathogen - hypothetical protein DVU3260 1 None None None 46579539 Nonpathogen - lipoprotein, putative DVU1126 1 None None None 46579587 Nonpathogen - hypothetical protein DVU1176 1 None None None 46579842 Nonpathogen - hpt domain protein/STAS domain protein DVU1431 2 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 46579301 Common - response regulator DVU0888 218 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 46581742 Nonpathogen - hypothetical protein DVU3341 1 None None None 46581572 Common cobJ precorrin-3b C17-methyltransferase DVU3170 119 COG1010 CobJ, Precorrin-3B methylase Coenzyme metabolism 46581374 Nonpathogen - glycosyl transferase, family 8 DVU2971 1 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 46579753 Common - cation ABC transporter, ATP-binding protein, putative DVU1342 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 46578951 Common hmcA high-molecular-weight cytochrome C DVU0536 15 None None None 46578441 Common - hypothetical protein DVU0024 13 None None None 46578936 Common csrA carbon storage regulator DVU0521 61 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 46578555 Common - response regulator DVU0138 205 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46579388 Common - hypothetical protein DVU0975 60 COG3028 COG3028, Uncharacterized protein conserved in bacteria Function unknown 46581197 Common - electron transport complex protein RnfD, putative DVU2793 76 COG4658 RnfD, Predicted NADH:ubiquinone oxidoreductase, subunit RnfD Energy production and conversion 46579049 Common - dolichyl-phosphate-mannose-protein mannosyltransferase family protein DVU0635 28 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 46578732 Common flgB flagellar basal body rod protein FlgB DVU0316 68 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 46580093 Common - hypothetical protein DVU1683 2 None None None 46580604 Nonpathogen - hypothetical protein DVU2199 1 None None None 46580276 Common dapF diaminopimelate epimerase DVU1867 200 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 46580958 Common - hypothetical protein DVU2554 24 COG4866 COG4866, Uncharacterized conserved protein Function unknown 46579940 Common - decarboxylase family protein DVU1529 132 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 46581069 Common - phosphate ABC transporter, permease protein, putative DVU2665 15 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 46581669 Nonpathogen - hypothetical protein DVU3267 2 None None None 46578573 Common - ATP-dependent DNA helicase, UvrD/REP family DVU0156 231 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 46578586 Common - oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein DVU0169 199 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 46580836 Nonpathogen - hypothetical protein DVU2431 1 None None None 46579659 Common argS arginyl-tRNA synthetase DVU1248 247 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 46579633 Nonpathogen - hypothetical protein DVU1222 1 None None None 46580216 Common mgtE magnesium transporter DVU1806 172 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 46580891 Nonpathogen - hypothetical protein DVU2487 1 None None None 46578887 Common trpA tryptophan synthase subunit alpha DVU0471 172 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 46579975 Nonpathogen - hypothetical protein DVU1564 1 None None None 46578807 Nonpathogen - hypothetical protein DVU0391 1 COG4681 COG4681, Uncharacterized protein conserved in bacteria Function unknown 46580870 Nonpathogen - flocculin repeat domain DVU2466 2 None None None 46581144 Common livF high-affinity branched-chain amino acid ABC transporter, ATP-binding protein DVU2740 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 46579189 Common atpG ATP synthase, F1 gamma subunit DVU0776 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 46579892 Common - nuclease domain protein DVU1481 78 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 46580861 Nonpathogen - hypothetical protein DVU2457 1 None None None 46580184 Nonpathogen - hypothetical protein DVU1774 1 None None None 46581730 Nonpathogen - hypothetical protein DVU3330 1 None None None 46581025 Nonpathogen - hypothetical protein DVU2621 1 None None None 46580645 Common - hydantoinase/oxoprolinase family protein DVU2240 117 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 46580017 Common - potassium uptake protein, TrkA family DVU1606 219 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 46579290 Nonpathogen - hypothetical protein DVU0877 1 None None None 46581020 Common - sensory box histidine kinase/response regulator DVU2616 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46579190 Common atpA F0F1 ATP synthase subunit alpha DVU0777 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 46578705 Common moaC molybdenum cofactor biosynthesis protein C DVU0289 195 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 46579899 Nonpathogen - minor tail protein, putative DVU1488 1 None None None 46581013 Common - chemotaxis MotB protein, putative DVU2609 151 COG1360 MotB, Flagellar motor protein Cell motility and secretion 46579717 Common rplB 50S ribosomal protein L2 DVU1306 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 46580417 Common - hypothetical protein DVU2009 4 None None None 46580673 Nonpathogen - hypothetical protein DVU2268 1 None None None 46579874 Common - siroheme synthase, N-terminal domain protein DVU1463 140 COG1648 CysG, Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) Coenzyme metabolism 46581243 Nonpathogen - hypothetical protein DVU2839 1 COG3465 COG3465, Uncharacterized conserved protein Function unknown 46579787 Common ilvB-2 acetolactate synthase, large subunit, biosynthetic type DVU1376 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 46579747 Common clpX ATP-dependent protease ATP-binding subunit DVU1336 226 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 46578973 Nonpathogen - lipoprotein, putative DVU0559 1 None None None 46578497 Common fumC fumarate hydratase DVU0080 204 COG0114 FumC, Fumarase Energy production and conversion 46578756 Common - acetyltransferase, CysE/LacA/LpxA/NodL family DVU0340 74 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 46581149 Nonpathogen - hypothetical protein DVU2745 1 None None None 46580508 Common - iron-sulfur cluster-binding/ATPase domain protein DVU2103 45 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 46581138 Nonpathogen - hypothetical protein DVU2734 1 None None None 46578541 Nonpathogen - hypothetical protein DVU0124 1 None None None 46580813 Nonpathogen - hypothetical protein DVU2408 1 None None None 46581062 Common - hypothetical protein DVU2658 127 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 46578548 Nonpathogen - hypothetical protein DVU0131 1 None None None 46580209 Common fusA-2 elongation factor G DVU1799 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 46580663 Common ruvC crossover junction endodeoxyribonuclease RuvC DVU2258 192 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 46581717 Nonpathogen - hypothetical protein DVU3317 1 None None None 46578963 Common - high-affinity branched-chain amino acid ABC transporter, permease protein DVU0548 162 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 46581628 Nonpathogen - hypothetical protein DVU3226 1 None None None 46578527 Common - sigma-54 dependent transcriptional regulator/response regulator DVU0110 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46579343 Common proB gamma-glutamyl kinase DVU0930 193 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 46578643 Nonpathogen - hypothetical protein DVU0226 1 None None None 46580161 Nonpathogen - hypothetical protein DVU1751 1 None None None 46578470 Common - sulfate permease, putative DVU0053 167 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 46578981 Common - TerC family protein DVU0567 97 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 46580623 Common - GTP-binding protein, putative DVU2218 163 COG1162 COG1162, Predicted GTPases General function prediction only 46580471 Common - site-specific recombinase, phage integrase family DVU2066 226 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 46580106 Nonpathogen - hypothetical protein DVU1696 2 None None None 46581664 Common fdrA fumarate reductase DVU3262 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 46581677 Nonpathogen - hypothetical protein DVU3275 1 None None None 46581300 Common - TPR domain protein DVU2896 4 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 46579064 Common - chelatase, putative DVU0650 24 COG4822 CbiK, Cobalamin biosynthesis protein CbiK, Co2+ chelatase Coenzyme metabolism 46580285 Common - dnaJ protein, putative DVU1876 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 46581711 Nonpathogen - hypothetical protein DVU3311 1 None None None 46581388 Common leuB 3-isopropylmalate dehydrogenase DVU2985 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 46578984 Nonpathogen - hypothetical protein DVU0570 1 None None None 46578448 Common - AzlC family protein DVU0031 111 COG1296 AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) Amino acid transport and metabolism 46580901 Common - lipoprotein, putative DVU2497 2 None None None 46578434 Nonpathogen - hypothetical protein DVU0017 1 None None None 46579935 Nonpathogen - hypothetical protein DVU1524 3 None None None 46580147 Nonpathogen - hypothetical protein DVU1737 1 None None None 46580200 Common - MutS2 family protein DVU1790 203 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 46579907 Nonpathogen - hypothetical protein DVU1496 1 None None None 46581710 Common - ATP-dependent RNA helicase, DEAD/DEAH family DVU3310 233 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 46579125 Common - amino acid ABC transporter, periplasmic-binding protein DVU0712 150 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 46580415 Common - nuclease, putative DVU2007 62 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 46580543 Common - hypothetical protein DVU2138 20 None None None 46581324 Common tuf elongation factor Tu DVU2920 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 46579949 Nonpathogen - hypothetical protein DVU1538 1 None None None 46579729 Common rplF 50S ribosomal protein L6 DVU1318 233 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 46580402 Common - cation-transporting ATPase, E1-E2 family DVU1993 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 46578494 Common - hypothetical protein DVU0077 65 COG4129 COG4129, Predicted membrane protein Function unknown 46581784 Nonpathogen - hypothetical protein DVU3383 1 None None None 46579262 Nonpathogen - heterodisulfide reductase, iron-sulfur-binding subunit, putative DVU0849 38 COG1148 HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins Energy production and conversion 46580685 Common - amino acid permease family protein DVU2280 147 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 46580388 Common - ABC transporter, ATP-binding protein DVU1979 247 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 46580222 Common - cytochrome c oxidase, subunit II, putative DVU1812 158 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 46579565 Nonpathogen - hypothetical protein DVU1154 1 None None None 46580826 Nonpathogen - 4-oxalocrotonate tautomerase family protein DVU2421 8 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 46580599 Nonpathogen - hypothetical protein DVU2194 1 None None None 46578866 Common ribF riboflavin biosynthesis protein RibF DVU0450 211 COG0196 RibF, FAD synthase Coenzyme metabolism 46579701 Nonpathogen - nitrate reductase, gamma subunit, putative DVU1290 21 COG2181 NarI, Nitrate reductase gamma subunit Energy production and conversion 46579156 Common - sensory box histidine kinase DVU0743 216 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46579889 Nonpathogen - hypothetical protein DVU1478 1 None None None 46579526 Nonpathogen - hypothetical protein DVU1113 1 None None None 46578430 Common - sensory box histidine kinase DVU0013 221 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 46580355 Common - 2-oxoglutarate ferredoxin oxidoreductase subunit beta DVU1946 132 COG1013 PorB, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Energy production and conversion 46578832 Common - GGDEF domain protein DVU0416 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 46580868 Nonpathogen - hypothetical protein DVU2464 1 None None None 46580849 Nonpathogen - hypothetical protein DVU2445 1 None None None 46578665 Common - hypothetical protein DVU0249 67 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 46579846 Common - hypothetical protein DVU1435 22 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 46579324 Common truA tRNA pseudouridine synthase A DVU0911 220 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 46578648 Nonpathogen - hypothetical protein DVU0231 1 None None None 46578907 Common argC N-acetyl-gamma-glutamyl-phosphate reductase DVU0492 210 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 46581113 Nonpathogen - hypothetical protein DVU2709 1 None None None 46578904 Common purD phosphoribosylamine--glycine ligase DVU0488 231 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 46578613 Nonpathogen - hypothetical protein DVU0196 1 None None None 46580410 Nonpathogen - hypothetical protein DVU2002 1 None None None 46578743 Common - exopolysaccharide biosynthesis protein, putative DVU0327 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 46580210 Nonpathogen - hypothetical protein DVU1800 1 None None None 46579297 Nonpathogen - hypothetical protein DVU0884 18 COG4802 FtrB, Ferredoxin-thioredoxin reductase, catalytic subunit Energy production and conversion 46579852 Common - flagellin DVU1441 113 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 46579819 Nonpathogen - hypothetical protein DVU1408 1 None None None 46580748 Common - amino acid ABC transporter, ATP-binding protein DVU2343 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 46581006 Nonpathogen - hypothetical protein DVU2602 1 None None None 46578724 Common - hypothetical protein DVU0308 41 COG4125 COG4125, Predicted membrane protein Function unknown 46579986 Common prsA ribose-phosphate pyrophosphokinase DVU1575 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 46581427 Nonpathogen - hypothetical protein DVU3024 1 None None None 46578561 Common - cytidyltransferase-related domain protein DVU0144 138 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 46581355 Common - hypothetical protein DVU2952 117 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 46578928 Common flgG flagellar basal body rod protein FlgG DVU0513 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 46578550 Nonpathogen - hypothetical protein DVU0133 4 None None None 46581530 Common - lipoprotein, putative DVU3128 20 COG3009 COG3009, Uncharacterized protein conserved in bacteria Function unknown 46580297 Common - ATP-NAD kinase domain protein DVU1888 226 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 46580569 Nonpathogen - lipoprotein, putative DVU2164 1 None None None 46578845 Common - Ech hydrogenase, subunit EchF, putative DVU0429 155 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 46581368 Nonpathogen - hypothetical protein DVU2965 1 None None None 46580653 Nonpathogen - hypothetical protein DVU2248 1 None None None 46578827 Common - heptosyltransferase family protein DVU0411 85 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 46581407 Common - radical SAM domain protein DVU3004 33 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 46578479 Common - RND efflux system, outer membrane protein, NodT family DVU0062 133 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 46578667 Nonpathogen - hypothetical protein DVU0251 5 COG0730 COG0730, Predicted permeases General function prediction only 46580245 Common - tRNA nucleotidyltransferase, putative DVU1836 186 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 46579105 Nonpathogen - hypothetical protein DVU0691 8 COG3366 COG3366, Uncharacterized protein conserved in archaea Function unknown 46579224 Common dnaK dnaK protein DVU0811 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 46579640 Nonpathogen - hypothetical protein DVU1229 1 None None None 46579733 Common rplO 50S ribosomal protein L15 DVU1322 220 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 46581338 Common - sigma-54 dependent transcriptional regulator/response regulator DVU2934 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46581439 Common - hypothetical protein DVU3036 31 COG2006 COG2006, Uncharacterized conserved protein Function unknown 46579387 Nonpathogen - hypothetical protein DVU0974 1 None None None 46581781 Nonpathogen - hypothetical protein DVU3380 1 None None None 46580990 Common - putative ABC transporter ATP-binding protein DVU2586 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 46578508 Common - hypothetical protein DVU0091 67 COG1432 COG1432, Uncharacterized conserved protein Function unknown 46579563 Nonpathogen - hypothetical protein DVU1152 1 None None None 46579977 Common - phosphoadenosine phosphosulfate reductase, putative DVU1566 176 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 46580055 Common - transcriptional regulator, ArsR family DVU1645 160 COG0640 ArsR, Predicted transcriptional regulators Transcription 46580696 Common - carbon monoxide-induced hydrogenase CooH, putative DVU2291 192 COG3261 HycE, Ni,Fe-hydrogenase III large subunit Energy production and conversion 46580779 Common lolD lipoprotein releasing system, ATP-binding protein DVU2374 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 46581002 Common - hypothetical protein DVU2598 8 None None None 46581121 Common - hypothetical protein DVU2717 3 None None None 46580906 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase DVU2502 208 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 46578766 Common spsF spore coat polysaccharide biosynthesis protein spsF DVU0350 32 COG1861 SpsF, Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog Cell envelope biogenesis, outer membrane 46578513 Common potC spermidine/putrescine ABC transporter membrane protein DVU0096 194 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 46579237 Nonpathogen - hypothetical protein DVU0824 1 None None None 46581112 Common - virion morphogenesis protein DVU2708 20 COG5005 COG5005, Mu-like prophage protein gpG General function prediction only 46578837 Common - agmatinase, putative DVU0421 155 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 46579791 Nonpathogen - hypothetical protein DVU1380 1 None None None 46580478 Common cheY-2 chemotaxis protein CheY DVU2073 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 46580425 Common - ISDvu5, transposase DVU2017 47 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 46581152 Common cobM precorrin-4 C11-methyltransferase DVU2748 201 COG2875 CobM, Precorrin-4 methylase Coenzyme metabolism 46580580 Common - adenine specific DNA methyltransferase, putative DVU2175 36 COG4889 COG4889, Predicted helicase General function prediction only 46581425 Common - sensory box histidine kinase/response regulator DVU3022 212 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46579088 Common - ABC transporter, permease protein, His/Glu/Gln/Arg/opine family DVU0674 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 46578533 Common - polysaccharide deacetylase family protein DVU0116 15 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 46580554 Common - hypothetical protein DVU2149 33 COG1293 COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP Transcription 46578796 Common - sulfatase, putative DVU0380 90 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 46578726 Common fliI flagellum-specific ATP synthase FliI DVU0310 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 46581157 Common - C_GCAxxG_C_C family protein DVU2753 14 None None None 46580443 Common - helix-turn-helix protein, CopG family DVU2036 17 COG3905 COG3905, Predicted transcriptional regulator Transcription 46580177 Common - biotin synthase DVU1767 71 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 46580915 Nonpathogen - hypothetical protein DVU2511 1 None None None 46580465 Nonpathogen - hypothetical protein DVU2060 1 None None None 46581616 Common - phosphoenolpyruvate synthase-related protein DVU3214 133 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 46581230 Nonpathogen - hypothetical protein DVU2826 1 None None None 46581430 Common glcD glycolate oxidase, subunit GlcD DVU3027 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 46580168 Common - lipoprotein, putative DVU1758 2 None None None 46578419 Common dnaN DNA polymerase III, beta subunit DVU0002 196 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 46579178 Common - hydroxypyruvate reductase, putative DVU0765 86 COG2379 GckA, Putative glycerate kinase Carbohydrate transport and metabolism 46580803 Nonpathogen - hypothetical protein DVU2398 4 COG1633 COG1633, Uncharacterized conserved protein Function unknown 46581082 Common - RNA pseudouridine synthase family protein DVU2678 83 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 46581319 Nonpathogen - hypothetical protein DVU2915 1 None None None 46580494 Nonpathogen - hypothetical protein DVU2089 1 None None None 46579205 Common - hypothetical protein DVU0792 3 None None None 46580439 Common - ERF family protein DVU2032 7 None None None 46580170 Common - transcriptional regulator, TetR family DVU1760 21 COG1309 AcrR, Transcriptional regulator Transcription 46581056 Nonpathogen - hypothetical protein DVU2652 1 None None None 46579603 Common - acylphosphatase DVU1192 121 COG1254 AcyP, Acylphosphatases Energy production and conversion 46578639 Nonpathogen - hypothetical protein DVU0222 1 None None None 46579744 Nonpathogen - hypothetical protein DVU1333 1 None None None 46578975 Common - glycosyl transferase, group 1 family protein DVU0561 141 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46580879 Common - ferredoxin--NADP(+) reductase subunit alpha DVU2475 76 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 46579491 Common - R3H domain protein DVU1078 69 COG1847 Jag, Predicted RNA-binding protein General function prediction only 46579952 Nonpathogen - hypothetical protein DVU1541 1 None None None 46578819 Common dvsB dissimilatory sulfite reductase beta subunit DVU0403 37 COG2221 DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits Energy production and conversion 46580432 Common - hypothetical protein DVU2025 23 None None None 46579431 Common - type I secretion membrane fusion protein, HlyD family DVU1018 117 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 46580399 Nonpathogen - hypothetical protein DVU1990 1 None None None 46578961 Nonpathogen - hypothetical protein DVU0546 1 None None None 46579132 Common - ISDvu2, transposase OrfB DVU0719 84 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 46580219 Common nadB L-aspartate oxidase DVU1809 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 46580020 Common dapB dihydrodipicolinate reductase DVU1609 206 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 46580560 Nonpathogen - hypothetical protein DVU2155 4 None None None 46580039 Common rpoN RNA polymerase sigma-54 factor DVU1628 145 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 46578685 Common - transcriptional regulator, rrf2 protein, putative DVU0269 174 COG1959 COG1959, Predicted transcriptional regulator Transcription 46579970 Common mop aldehyde oxidoreductase DVU1559 122 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 46580768 Common thiM hydroxyethylthiazole kinase DVU2363 76 COG2145 ThiM, Hydroxyethylthiazole kinase, sugar kinase family Coenzyme metabolism 46581497 Common rr rubrerythrin DVU3094 79 COG1592 COG1592, Rubrerythrin Energy production and conversion 46579055 Common - hypothetical protein DVU0641 19 COG1315 COG1315, Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain DNA replication, recombination, and repair 46581768 Common aspS aspartyl-tRNA synthetase DVU3367 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 46578525 Nonpathogen - hypothetical protein DVU0108 1 None None None 46580537 Nonpathogen - hypothetical protein DVU2132 1 None None None 46578882 Common trpG anthranilate synthase, glutamine amidotransferase component DVU0466 228 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 46579662 Nonpathogen - hypothetical protein DVU1251 1 None None None 46580030 Common gpmA phosphoglyceromutase DVU1619 125 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 46581326 Nonpathogen secE preprotein translocase subunit SecE DVU2922 1 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 46579984 Common pth peptidyl-tRNA hydrolase DVU1573 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 46579212 Common - hypothetical protein DVU0799 2 None None None 46580577 Nonpathogen - hypothetical protein DVU2172 1 None None None 46580335 Common - hypothetical protein DVU1926 4 COG2105 COG2105, Uncharacterized conserved protein Function unknown 46580570 Common - lysozyme, putative DVU2165 7 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 46579286 Common tsf elongation factor Ts DVU0873 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 46581539 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase DVU3137 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 46580977 Nonpathogen - hypothetical protein DVU2573 1 None None None 46579567 Common - sigma-54 dependent transcriptional regulator, putative/response regulator DVU1156 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46578421 Common gyrA DNA gyrase, A subunit DVU0004 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 46579924 Common - hypothetical protein DVU1513 4 None None None 46580763 Nonpathogen - hypothetical protein DVU2358 1 None None None 46581634 Common flhA flagellar biosynthesis protein A DVU3232 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 46579515 Common - baseplate assembly protein, putative DVU1102 18 COG3299 XkdT, Uncharacterized homolog of phage Mu protein gp47 Function unknown 46579615 Common fabF 3-oxoacyl-(acyl-carrier-protein) synthase II DVU1204 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 46578824 Common - response regulator/sensory box/GGDEF domain/EAL domain protein DVU0408 225 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 46578622 Nonpathogen - hypothetical protein DVU0205 1 None None None 46579464 Common ccmE cytochrome c-type biogenesis protein CcmE DVU1051 20 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 46580044 Common - PTS system, IIB component DVU1633 40 COG3444 COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB Carbohydrate transport and metabolism 46581376 Common - integration host factor, beta subunit DVU2973 207 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 46578893 Common icd isocitrate dehydrogenase, NADP-dependent DVU0477 222 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 46578809 Common ung uracil-DNA glycosylase DVU0393 128 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 46580976 Common - ferrous iron transport protein A, putative DVU2572 53 COG1918 FeoA, Fe2+ transport system protein A Inorganic ion transport and metabolism 46580831 Nonpathogen - hypothetical protein DVU2426 1 None None None 46581646 Nonpathogen - hypothetical protein DVU3244 1 None None None 46580661 Common ruvA Holliday junction DNA helicase RuvA DVU2256 208 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 46581563 Common - ABC transporter, ATP-binding protein DVU3161 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 46580647 Common - asparaginase family protein DVU2242 84 COG1446 COG1446, Asparaginase Amino acid transport and metabolism 46581255 Common - tail protein, putative DVU2851 21 COG3299 XkdT, Uncharacterized homolog of phage Mu protein gp47 Function unknown 46578763 Common - transferase, hexapeptide repeat family DVU0347 190 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 46579436 Common - rhomboid family protein DVU1023 149 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 46581046 Common - alanyl-tRNA synthetase family protein, putative DVU2642 70 COG2872 COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain General function prediction only 46580970 Common lysA-2 diaminopimelate decarboxylase DVU2566 217 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 46580046 Nonpathogen - hypothetical protein DVU1635 1 None None None 46580793 Common tolQ-1 tolQ protein DVU2388 147 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 46580366 Nonpathogen - hypothetical protein DVU1957 1 None None None 46578875 Nonpathogen - hypothetical protein DVU0459 1 None None None 46579486 Common - hypothetical protein DVU1073 7 None None None 46581475 Common - ABC transporter, permease protein, putative DVU3072 168 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 46580108 Nonpathogen - hypothetical protein DVU1698 1 None None None 46580936 Common - transcriptional regulator, MerR family DVU2532 105 COG0789 SoxR, Predicted transcriptional regulators Transcription 46581264 Common - hypothetical protein DVU2860 4 None None None 46580116 Nonpathogen - hypothetical protein DVU1706 1 None None None 46581504 Common - tonB protein, putative DVU3101 4 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 46581456 Common - hypothetical protein DVU3053 60 COG2519 GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases Translation, ribosomal structure and biogenesis 46579917 Nonpathogen - hypothetical protein DVU1506 1 None None None 46580061 Nonpathogen - hypothetical protein DVU1651 1 None None None 46579690 Common folP dihydropteroate synthase DVU1279 218 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 46578466 Common - OmpA family protein DVU0049 65 COG1360 MotB, Flagellar motor protein Cell motility and secretion 46578546 Common - sensory box/HDIG domain protein DVU0129 153 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 46580309 Common - hypothetical protein DVU1900 70 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 46579866 Common - hypothetical protein DVU1455 50 COG1579 COG1579, Zn-ribbon protein, possibly nucleic acid-binding General function prediction only 46581207 Nonpathogen - hypothetical protein DVU2803 2 None None None 46579548 Nonpathogen - hypothetical protein DVU1135 1 None None None 46579249 Common trmD tRNA (guanine-N1)-methyltransferase DVU0836 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 46580313 Common cheW-2 chemotaxis protein CheW DVU1904 136 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 46579618 Common fabH 3-oxoacyl-(acyl-carrier-protein) synthase III DVU1207 198 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 46579738 Common rpsK 30S ribosomal protein S11 DVU1327 247 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 46581202 Common - ApbE family protein DVU2798 139 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 46581581 Common ispB octaprenyl-diphosphate synthase DVU3179 236 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 46581765 Common - hypothetical protein DVU3364 30 COG1852 COG1852, Uncharacterized conserved protein Function unknown 46578506 Common - hypothetical protein DVU0089 9 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46581703 Nonpathogen - hypothetical protein DVU3302 1 None None None 46579140 Common - hypothetical protein DVU0727 19 None None None 46580921 Common - hypothetical protein DVU2517 11 COG1896 COG1896, Predicted hydrolases of HD superfamily General function prediction only 46579541 Common - lysozyme, putative DVU1128 38 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 46581632 Common - flagellar synthesis regulator FleN DVU3230 211 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 46581099 Common - hypothetical protein DVU2695 18 COG4382 COG4382, Mu-like prophage protein gp16 Function unknown 46581164 Nonpathogen - hypothetical protein DVU2760 1 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 46578913 Common - iron-sulfur cluster-binding protein, putative DVU0498 33 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 46580488 Common relA GTP pyrophosphokinase DVU2083 207 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 46579369 Common rpsF 30S ribosomal protein S6 DVU0956 191 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 46579763 Common - 6-pyruvoyl tetrahydrobiopterin synthase, putative DVU1352 112 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 46579033 Common - sigma-54 dependent transcriptional regulator DVU0619 171 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46581131 Common - hypothetical protein DVU2727 9 COG4381 COG4381, Mu-like prophage protein gp46 Function unknown 46581697 Nonpathogen - hypothetical protein DVU3296 8 None None None 46578676 Common - response regulator DVU0260 210 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46579447 Nonpathogen - hypothetical protein DVU1034 1 None None None 46579782 Common - HAD-superfamily hydrolase, subfamily IA DVU1371 71 COG0546 Gph, Predicted phosphatases General function prediction only 46580481 Common cheR-2 chemotaxis protein methyltransferase DVU2076 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 46578592 Common - tungsten formylmethanofuran dehydrogenase family protein/molybdopterin binding protein DVU0175 79 COG2191 COG2191, Formylmethanofuran dehydrogenase subunit E Energy production and conversion 46581091 Nonpathogen - hypothetical protein DVU2687 1 None None None 46579099 Common - phosphomannomutase DVU0685 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 46578944 Common - transcriptional regulator, rrf2 protein, putative DVU0529 178 COG1959 COG1959, Predicted transcriptional regulator Transcription 46579367 Common - organic solvent tolerance protein, putative DVU0954 110 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 46581721 Nonpathogen - hypothetical protein DVU3321 1 None None None 46581190 Nonpathogen - hypothetical protein DVU2786 1 None None None 46579628 Common - MATE efflux family protein DVU1217 176 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 46578775 Common - HesB-like domain DVU0359 3 COG0316 IscA, Uncharacterized conserved protein Function unknown 46580001 Common radA DNA repair protein RadA DVU1590 213 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 46581100 Common - hypothetical protein DVU2696 7 COG5566 COG5566, Uncharacterized conserved protein Function unknown 46578422 Common - lipoprotein, putative DVU0005 4 None None None 46580678 Nonpathogen - hypothetical protein DVU2273 1 None None None 46581316 Common rpmE 50S ribosomal protein L31 DVU2912 168 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 46581400 Nonpathogen - hypothetical protein DVU2997 4 COG4122 COG4122, Predicted O-methyltransferase General function prediction only 46580008 Common - sulfite reductase, assimilatory-type DVU1597 143 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 46581747 Nonpathogen - hypothetical protein DVU3346 1 None None None 46580886 Common fdnG-2 formate dehydrogenase, alpha subunit, selenocysteine-containing DVU2482 183 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 46579395 Common - hypothetical protein DVU0982 41 COG1387 HIS2, Histidinol phosphatase and related hydrolases of the PHP family Amino acid transport and metabolism / General function prediction only 46578786 Nonpathogen - hypothetical protein DVU0370 1 None None None 46581120 Common - tail sheath protein, putative DVU2716 21 COG4386 COG4386, Mu-like prophage tail sheath protein gpL General function prediction only 46578678 Nonpathogen - hypothetical protein DVU0262 1 None None None 46580302 Common - ATP-dependent protease, putative DVU1893 89 COG1067 LonB, Predicted ATP-dependent protease Posttranslational modification, protein turnover, chaperones 46579083 Nonpathogen - hypothetical protein DVU0669 1 None None None 46579699 Nonpathogen - cytochrome c family protein DVU1288 13 None None None 46580712 Common - C4-type zinc finger protein, DksA/TraR family DVU2307 7 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 46581343 Common - hypothetical protein DVU2939 63 COG1606 COG1606, ATP-utilizing enzymes of the PP-loop superfamily General function prediction only 46581680 Common - peptidase/PDZ domain protein DVU3278 220 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 46578599 Common - radical SAM domain protein DVU0182 24 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 46581733 Nonpathogen - hypothetical protein DVU3333 2 None None None 46578671 Nonpathogen - hypothetical protein DVU0255 1 None None None 46579688 Nonpathogen - hypothetical protein DVU1277 1 None None None 46581541 Common - bacterial extracellular solute-binding protein, family 3 DVU3139 68 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46581328 Common rplK 50S ribosomal protein L11 DVU2924 248 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 46580610 Common - tryptophan-specific transport protein DVU2205 31 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 46579040 Common ilvN-1 acetolactate synthase, small subunit DVU0626 187 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 46579887 Nonpathogen - hypothetical protein DVU1476 1 None None None 46580531 Nonpathogen - hypothetical protein DVU2126 1 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 46578854 Common - AcrB/AcrD/AcrF family protein DVU0438 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 46578424 Common asnC asparaginyl-tRNA synthetase DVU0007 248 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 46580962 Common bioB biotin synthase DVU2558 181 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 46579219 Common - chemotaxis protein CheY, putative DVU0806 216 COG4753 COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Signal transduction mechanisms 46581003 Nonpathogen - hypothetical protein DVU2599 1 None None None 46579260 Common aprA adenylylsulfate reductase DVU0847 42 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 46578911 Common polA DNA polymerase I DVU0496 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 46580218 Common nadA quinolinate synthetase DVU1808 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 46579578 Nonpathogen - hypothetical protein DVU1167 1 None None None 46578477 Common - efflux transporter, RND family, MFP subunit DVU0060 162 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 46579571 Common - urea transporter, putative DVU1160 20 COG4413 Utp, Urea transporter Amino acid transport and metabolism 46579528 Nonpathogen - hypothetical protein DVU1115 1 None None None 46579848 Nonpathogen - hypothetical protein DVU1437 1 None None None 46579816 Nonpathogen - hypothetical protein DVU1405 1 None None None 46579323 Common fliM flagellar motor switch protein FliM DVU0910 109 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 46579906 Nonpathogen - hypothetical protein DVU1495 1 None None None 46578795 Common - transcriptional regulator, putative DVU0379 68 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 46579980 Common porA pyruvate ferredoxin oxidoreductase, alpha subunit DVU1569 112 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 46579014 Common ldh L-lactate dehydrogenase DVU0600 167 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 46581023 Common - hypothetical protein DVU2619 14 None None None 46580186 Nonpathogen - hypothetical protein DVU1776 1 None None None 46579358 Common - sensor histidine kinase DVU0945 220 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46579697 Common - reductase, transmembrane subunit, putative DVU1286 45 COG5557 COG5557, Polysulphide reductase Energy production and conversion 46579987 Common ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase DVU1576 177 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 46581385 Common - 3-isopropylmalate dehydratase, large subunit DVU2982 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 46579035 Common - sigma-54 dependent DNA-binding response regulator DVU0621 215 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46579631 Common - nitroreductase family protein DVU1220 56 COG0778 NfnB, Nitroreductase Energy production and conversion 46580956 Common gltX-2 glutamyl-tRNA synthetase DVU2552 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 46581667 Common - tartrate dehydratase beta subunit, putative DVU3265 146 COG1838 FumA, Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain Energy production and conversion 46578739 Common folD methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase DVU0323 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 46579404 Common - hypothetical protein DVU0991 21 COG3359 COG3359, Predicted exonuclease DNA replication, recombination, and repair 46579521 Nonpathogen - hypothetical protein DVU1108 1 None None None 46580381 Nonpathogen - hypothetical protein DVU1972 1 None None None 46578563 Nonpathogen - hypothetical protein DVU0146 2 None None None 46580075 Common aroQ 3-dehydroquinate dehydratase DVU1665 170 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 46579865 Common ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DVU1454 196 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 46580988 Common - transporter, CorA family DVU2584 83 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 46579877 Common argB acetylglutamate kinase DVU1466 219 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 46578923 Common infB translation initiation factor IF-2 DVU0508 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 46579409 Common - hypothetical protein DVU0996 4 None None None 46581460 Common - oxygen-independent coproporphyrinogen III oxidase, putative DVU3057 205 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 46580348 Common - anaerobic glycerol-3-phosphate dehydrogenase subunit B DVU1939 32 COG3075 GlpB, Anaerobic glycerol-3-phosphate dehydrogenase Amino acid transport and metabolism 46580472 Common - GGDEF domain protein DVU2067 52 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 46578543 Common - ABC transporter, ATP-binding protein DVU0126 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 46580608 Common - endoribonuclease, L-PSP family DVU2203 188 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 46581773 Nonpathogen - hypothetical protein DVU3372 1 None None None 46580742 Common - peptidase, M23/M37 family DVU2337 115 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 46579062 Common - iron compound ABC transporter, ATP-binding protein DVU0648 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 46579648 Common - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family DVU1237 176 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 46580364 Common - TPR domain protein DVU1955 12 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 46579673 Common - twitching motility protein PilT DVU1262 208 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 46581416 Common - glycosyl transferase, group 2 family protein DVU3013 207 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 46580671 Nonpathogen - hypothetical protein DVU2266 1 None None None 46579005 Common - methyl-accepting chemotaxis protein DVU0591 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46579789 Common ilvC ketol-acid reductoisomerase DVU1378 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 46580206 Nonpathogen - hypothetical protein DVU1796 1 None None None 46581678 Common - ferredoxin I DVU3276 58 COG4231 COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Energy production and conversion 46578553 Nonpathogen - hypothetical protein DVU0136 1 None None None 46581577 Nonpathogen - hypothetical protein DVU3175 1 COG3242 COG3242, Uncharacterized protein conserved in bacteria Function unknown 46581210 Common - MotA/TolQ/ExbB proton channel family protein DVU2806 4 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 46581010 Nonpathogen - hypothetical protein DVU2606 1 None None None 46578616 Common - hypothetical protein DVU0199 8 None None None 46579353 Common - GGDEF domain protein DVU0940 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 46580264 Common - integrase, truncation DVU1855 74 None None None 46581049 Common - Na+/H+ antiporter family protein DVU2645 71 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 46580086 Common secG preprotein translocase subunit SecG DVU1676 9 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 46581749 Common - pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative DVU3348 110 COG1013 PorB, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Energy production and conversion 46578431 Common infA-1 translation initiation factor IF-1 DVU0014 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 46580255 Common pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase DVU1846 207 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 46579428 Nonpathogen - hypothetical protein DVU1015 1 None None None 46579716 Common rplW 50S ribosomal protein L23 DVU1305 12 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 46579641 Nonpathogen - hypothetical protein DVU1230 1 None None None 46578532 Common aroE shikimate 5-dehydrogenase DVU0115 224 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 46579421 Common - hypothetical protein DVU1008 2 None None None 46581375 Common - chemotaxis protein CheD, putative DVU2972 85 COG1871 CheD, Chemotaxis protein; stimulates methylation of MCP proteins Cell motility and secretion / Signal transduction mechanisms 46581608 Common - phosphoribosylaminoimidazolecarboxamide formyltransferase, putative DVU3206 218 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 46580291 Common - HDIG domain protein DVU1882 56 COG1480 COG1480, Predicted membrane-associated HD superfamily hydrolase General function prediction only 46579123 Common - competence protein comM, putative DVU0710 189 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 46581484 Common - hypothetical protein DVU3081 127 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 46581215 Common - formate dehydrogenase, beta subunit, putative DVU2811 140 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 46580980 Common - oligopeptide ABC transporter, ATP-binding protein DVU2576 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 46579946 Nonpathogen - hypothetical protein DVU1535 13 None None None 46579292 Nonpathogen - hypothetical protein DVU0879 1 None None None 46580597 Nonpathogen - hypothetical protein DVU2192 1 None None None 46580828 Common - transcriptional regulator, putative DVU2423 146 COG1733 COG1733, Predicted transcriptional regulators Transcription 46581392 Common pspF psp operon transcriptional activator DVU2989 171 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46580654 Nonpathogen - hypothetical protein DVU2249 1 None None None 46579228 Common - AsmA family protein DVU0815 55 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 46580326 Common hysB periplasmic [NiFeSe] hydrogenase, small subunit DVU1917 77 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 46579916 Common - holin, putative DVU1505 37 COG1403 McrA, Restriction endonuclease Defense mechanisms 46578634 Common - tail protein, putative DVU0217 18 COG4381 COG4381, Mu-like prophage protein gp46 Function unknown 46580787 Common - hypothetical protein DVU2382 4 None None None 46578700 Common ppiB-1 peptidyl-prolyl cis-trans isomerase B DVU0284 200 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 46581079 Common - DNA-binding response regulator, LuxR family DVU2675 171 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 46578436 Common ngr nigerythrin DVU0019 77 COG1592 COG1592, Rubrerythrin Energy production and conversion 46578836 Nonpathogen - hypothetical protein DVU0420 1 None None None 46580502 Common - transcriptional regulator, putative DVU2097 45 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 46579779 Common - rhodanese-like domain protein DVU1368 35 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 46578901 Common - hypothetical protein DVU0485 70 COG0390 COG0390, ABC-type uncharacterized transport system, permease component General function prediction only 46581787 Common - permease, putative DVU3386 92 COG0701 COG0701, Predicted permeases General function prediction only 46579974 Common - sensory box histidine kinase/response regulator DVU1563 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46578776 Common ilvB-1 acetolactate synthase catalytic subunit DVU0360 224 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 46579253 Common ffh signal recognition particle protein DVU0840 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 46580801 Common - alcohol dehydrogenase, iron-containing DVU2396 175 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 46580087 Common tpiA triosephosphate isomerase DVU1677 217 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 46578956 Nonpathogen - lipoprotein, putative DVU0541 1 None None None 46580606 Common - alcohol dehydrogenase, iron-containing DVU2201 169 COG1979 COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family Energy production and conversion 46578995 Common - response regulator/anti-anti-sigma factor DVU0581 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46580934 Common tkt transketolase DVU2530 221 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 46578580 Common - lipoprotein, putative DVU0163 17 None None None 46578746 Common - response regulator DVU0330 159 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 46580885 Common - formate dehydrogenase, beta subunit, putative DVU2481 134 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 46578896 Nonpathogen - hypothetical protein DVU0480 4 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 46578715 Common - anaerobic ribonucleoside triphosphate reductase DVU0299 106 COG1328 NrdD, Oxygen-sensitive ribonucleoside-triphosphate reductase Nucleotide transport and metabolism 46580894 Common - histidinol phosphatase, putative DVU2490 38 COG1387 HIS2, Histidinol phosphatase and related hydrolases of the PHP family Amino acid transport and metabolism / General function prediction only 46579184 Common - molybdenum-pterin binding domain protein/site-specific recombinase, phage integrase family DVU0771 54 COG3585 MopI, Molybdopterin-binding protein Coenzyme metabolism 46578575 Common - conserved hypothetical protein TIGR00104 DVU0158 133 COG1720 COG1720, Uncharacterized conserved protein Function unknown 46580669 Nonpathogen - hypothetical protein DVU2264 1 None None None 46581570 Common hemL glutamate-1-semialdehyde-2,1-aminomutase DVU3168 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 46580005 Common cheA-1 chemotaxis protein CheA DVU1594 160 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 46581188 Common - dehydrogenase, FMN-dependent family DVU2784 111 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 46580846 Common - heat shock protein, Hsp20 family DVU2442 117 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 46579626 Common - PAP2 family protein DVU1215 70 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 46578524 Common glnH glutamine ABC transporter, periplasmic glutamine-binding protein DVU0107 183 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46579656 Common - ABC transporter, ATP-binding protein DVU1245 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 46581294 Common - hypothetical protein DVU2890 53 COG3897 COG3897, Predicted methyltransferase General function prediction only 46580895 Common - ABC transporter, ATP-binding protein DVU2491 249 COG1119 ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA Inorganic ion transport and metabolism 46580708 Common - hypothetical protein DVU2303 100 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 46581441 Nonpathogen - hypothetical protein DVU3038 1 None None None 46581019 Common - bacterial extracellular solute-binding protein, family 3 DVU2615 100 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46580819 Nonpathogen - hypothetical protein DVU2414 1 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 46580511 Common - sigma-54 dependent transcriptional regulator DVU2106 178 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 46581551 Common sppA signal peptide peptidase SppA, 36K type DVU3149 190 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 46581517 Common kdsB 3-deoxy-manno-octulosonate cytidylyltransferase DVU3114 142 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 46578499 Common - hypothetical protein DVU0082 142 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 46581171 Common - iron-sulfur flavoprotein, putative DVU2767 32 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 46579476 Common - transcriptional regulatory protein DVU1063 173 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46580051 Nonpathogen - hypothetical protein DVU1640 1 None None None 46579720 Common rpsC 30S ribosomal protein S3 DVU1309 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 46581780 Common - ribonucleotide-diphosphate reductase subunit alpha DVU3379 224 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 46578658 Common - hypothetical protein DVU0241 26 COG1433 COG1433, Uncharacterized conserved protein Function unknown 46580114 Common - hypothetical protein DVU1704 26 None None None 46578891 Common - membrane protein, putative, truncation DVU0475 8 COG3274 COG3274, Uncharacterized protein conserved in bacteria Function unknown 46579911 Common - major capsid protein, HK97 family DVU1500 54 COG4653 COG4653, Predicted phage phi-C31 gp36 major capsid-like protein General function prediction only 46579477 Common - aconitate hydratase DVU1064 223 COG1048 AcnA, Aconitase A Energy production and conversion 46581716 Common pyrD dihydroorotate dehydrogenase DVU3316 183 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 46581225 Nonpathogen - hypothetical protein DVU2821 1 None None None 46581084 Common - flavodoxin DVU2680 89 COG0716 FldA, Flavodoxins Energy production and conversion 46580863 Common - hypothetical protein DVU2459 9 None None None 46581529 Common pqiB paraquat-inducible protein B DVU3127 63 COG3008 PqiB, Paraquat-inducible protein B General function prediction only 46581064 Nonpathogen - hypothetical protein DVU2660 1 None None None 46579555 Nonpathogen - transcriptional regulator, putative DVU1142 1 None None None 46578663 Common - pyruvate phosphate dikinase, PEP/pyruvate binding domain protein DVU0246 134 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 46579756 Common proS prolyl-tRNA synthetase DVU1345 247 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 46578814 Common - HMGL-like domain protein DVU0398 190 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 46581284 Nonpathogen - hypothetical protein DVU2880 1 None None None 46581498 Common - transcriptional regulator, Fur family DVU3095 163 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 46580851 Common - hypothetical protein DVU2447 2 None None None 46579513 Common - tail fiber protein, putative DVU1100 22 COG5301 COG5301, Phage-related tail fibre protein General function prediction only 46581279 Nonpathogen - DNA-binding domain, excisionase family DVU2875 1 COG3311 AlpA, Predicted transcriptional regulator Transcription 46579098 Common - hflK protein, putative DVU0684 176 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 46581147 Common livH high-affinity branched-chain amino acid ABC ransporter, permease protein DVU2743 150 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 46579151 Common - substrate-binding protein, putative DVU0738 134 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 46578943 Common - phosphatidylglycerophosphatase DVU0528 104 COG1267 PgpA, Phosphatidylglycerophosphatase A and related proteins Lipid metabolism 46578754 Common - hydrolase, haloacid dehalogenase-like family DVU0338 26 COG0546 Gph, Predicted phosphatases General function prediction only 46580271 Common - GGDEF domain protein DVU1862 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 46579638 Nonpathogen - hypothetical protein DVU1227 1 None None None 46581293 Common - BioY family protein DVU2889 108 COG1268 BioY, Uncharacterized conserved protein General function prediction only 46580247 Common trxB-2 thioredoxin-disulfide reductase DVU1838 245 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 46580729 Common - copper-translocating P-type ATPase DVU2324 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 46580660 Common ruvB Holliday junction DNA helicase B DVU2255 219 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 46578455 Common - acyltransferase domain protein DVU0038 65 COG3176 COG3176, Putative hemolysin General function prediction only 46580396 Common uvrA excinuclease ABC, A subunit DVU1987 241 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 46581448 Common - sensory box histidine kinase/response regulator DVU3045 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46579195 Nonpathogen - hypothetical protein DVU0782 1 None None None 46580140 Common - DNA-binding protein DVU1730 78 COG3093 VapI, Plasmid maintenance system antidote protein General function prediction only 46581305 Common pyrB aspartate carbamoyltransferase catalytic subunit DVU2901 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 46580358 Common nifA-1 nif-specific regulatory protein DVU1949 173 COG3604 FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains Transcription / Signal transduction mechanisms 46581660 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase DVU3258 211 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 46579669 Common glnN glutamine synthetase, type III DVU1258 144 COG3968 COG3968, Uncharacterized protein related to glutamine synthetase General function prediction only 46579158 Common - ABC transporter, periplasmic substrate-binding protein DVU0745 62 COG2998 TupB, ABC-type tungstate transport system, permease component Coenzyme metabolism 46579024 Common - hypothetical protein DVU0610 77 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 46580632 Nonpathogen - hypothetical protein DVU2227 1 None None None 46581708 Common - metallo-beta-lactamase family protein DVU3308 121 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 46580821 Common - hypothetical protein DVU2416 93 COG2947 COG2947, Uncharacterized conserved protein Function unknown 46579307 Common aroC chorismate synthase DVU0894 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 46579585 Nonpathogen - hypothetical protein DVU1174 3 None None None 46581613 Nonpathogen - hypothetical protein DVU3211 1 None None None 46581263 Common - tail sheath protein, putative DVU2859 21 COG4386 COG4386, Mu-like prophage tail sheath protein gpL General function prediction only 46580758 Nonpathogen - glycosyl transferase, group 2 family protein DVU2353 1 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 46579891 Nonpathogen - hypothetical protein DVU1480 1 None None None 46581591 Common - NOL1/NOP2/sun family protein DVU3189 195 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 46579897 Common - tail fiber protein, truncation DVU1486 20 COG4733 COG4733, Phage-related protein, tail component Function unknown 46580969 Common bioD dethiobiotin synthetase DVU2565 109 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 46579856 Common - flagellar hook-length control domain protein DVU1445 4 COG3144 FliK, Flagellar hook-length control protein Cell motility and secretion 46579377 Common - Glu/Leu/Phe/Val dehydrogenase family protein DVU0964 132 COG2902 COG2902, NAD-specific glutamate dehydrogenase Amino acid transport and metabolism 46581159 Common - hypothetical protein DVU2755 36 COG2107 COG2107, Predicted periplasmic solute-binding protein General function prediction only 46578953 Nonpathogen - AP endonuclease, family 2 DVU0538 17 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 46579671 Common - outer membrane protein P1, putative DVU1260 75 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 46578462 Common - flagellar biosynthesis protein, FliO, putative DVU0045 2 COG3190 FliO, Flagellar biogenesis protein Cell motility and secretion 46578938 Common flgM negative regulator of flagellin synthesis FlgM DVU0523 10 COG2747 FlgM, Negative regulator of flagellin synthesis (anti-sigma28 factor) Transcription / Cell motility and secretion / Intracellular trafficking and secretion 46579268 Common - radical SAM domain protein DVU0855 179 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 46580099 Nonpathogen - hypothetical protein DVU1689 1 None None None 46579345 Common - sensor histidine kinase DVU0932 124 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46578857 Common ade adenine deaminase DVU0441 71 COG1001 AdeC, Adenine deaminase Nucleotide transport and metabolism 46580103 Common gltX-1 glutamyl-tRNA synthetase DVU1693 247 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 46580384 Common - methyl-accepting chemotaxis protein DVU1975 145 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46579523 Nonpathogen - hypothetical protein DVU1110 1 None None None 46580253 Common - septum formation initiator family protein DVU1844 5 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 46578485 Nonpathogen - hypothetical protein DVU0068 21 COG2403 COG2403, Predicted GTPase General function prediction only 46581758 Nonpathogen - hypothetical protein DVU3357 1 None None None 46580027 Nonpathogen - hypothetical protein DVU1616 1 None None None 46581654 Nonpathogen - hypothetical protein DVU3252 1 None None None 46580319 Common - YjeF-related protein DVU1910 210 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 46579329 Common - redox-sensing transcriptional repressor Rex DVU0916 56 COG2344 COG2344, AT-rich DNA-binding protein General function prediction only 46580312 Common mfd transcription-repair coupling factor DVU1903 223 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 46579317 Common recJ single-stranded-DNA-specific exonuclease RecJ DVU0904 192 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 46580640 Nonpathogen - hypothetical protein DVU2235 2 None None None 46581459 Common - hypothetical protein DVU3056 67 COG1636 COG1636, Uncharacterized protein conserved in bacteria Function unknown 46579815 Common - radical SAM domain protein DVU1404 85 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 46579210 Common - hypothetical protein DVU0797 4 None None None 46580790 Common - ABC transporter, permease protein DVU2385 219 COG4174 COG4174, ABC-type uncharacterized transport system, permease component General function prediction only 46579678 Nonpathogen - hypothetical protein DVU1267 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 46578784 Nonpathogen - hypothetical protein DVU0368 1 None None None 46580149 Nonpathogen - hypothetical protein DVU1739 1 None None None 46581659 Common - DNA internalization-related competence protein ComEC/Rec2 DVU3257 128 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 46579769 Common - hydrolase, haloacid dehalogenase-like family DVU1358 18 COG0546 Gph, Predicted phosphatases General function prediction only 46579685 Nonpathogen - hypothetical protein DVU1274 2 None None None 46581405 Common - hypothetical protein DVU3002 95 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 46578512 Common - polyamine ABC transporter, periplasmic polyamine-binding protein DVU0095 136 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 46579360 Common - hypothetical protein DVU0947 185 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 46578628 Common - tail tube protein, putative DVU0211 10 None None None 46580483 Common cheB-2 protein-glutamate methylesterase CheB DVU2078 220 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 46580420 Nonpathogen - hypothetical protein DVU2012 2 None None None 46581367 Nonpathogen - hypothetical protein DVU2964 4 None None None 46581792 Nonpathogen - hypothetical protein DVU3391 1 None None None 46579277 Common - glycoprotease family protein, putative DVU0864 59 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 46578744 Common - glycosyl transferase, group 1 family protein DVU0328 197 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46580533 Nonpathogen - hypothetical protein DVU2128 1 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 46579381 Common - amino acid ABC transporter, ATP-binding protein DVU0968 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 46578632 Common - tail protein, putative DVU0215 21 COG4379 COG4379, Mu-like prophage tail protein gpP General function prediction only 46579052 Common - hypothetical protein DVU0638 5 None None None 46579761 Common dxs 1-deoxy-D-xylulose-5-phosphate synthase DVU1350 227 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 46581246 Common - type II DNA modification methyltransferase, putative DVU2842 125 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 46581454 Common mutT mutator mutT protein DVU3051 128 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 46581776 Common - cell division ATP-binding protein FtsE, putative DVU3375 249 COG2884 FtsE, Predicted ATPase involved in cell division Cell division and chromosome partitioning 46580068 Common - putative translaldolase DVU1658 154 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 46581720 Common - hypothetical protein DVU3320 2 None None None 46581729 Nonpathogen - hypothetical protein DVU3329 1 None None None 46578829 Common - potassium uptake protein, TrkH family DVU0413 109 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 46580997 Nonpathogen - hypothetical protein DVU2593 1 None None None 46581093 Common - bacteriophage DNA transposition B protein DVU2689 21 COG2842 COG2842, Uncharacterized ATPase, putative transposase General function prediction only 46579855 Common flgD basal-body rod modification protein FlgD DVU1444 122 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 46581007 Nonpathogen - hypothetical protein DVU2603 1 None None None 46581349 Common - hypothetical protein DVU2945 2 None None None 46579735 Common map methionine aminopeptidase, type I DVU1324 247 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 46579976 Nonpathogen - hypothetical protein DVU1565 1 None None None 46579347 Nonpathogen - hypothetical protein DVU0934 1 None None None 46581587 Common roO rubredoxin-oxygen oxidoreductase DVU3185 82 COG0426 FpaA, Uncharacterized flavoproteins Energy production and conversion 46579996 Common - vitamin B12-dependent methionine synthase family protein DVU1585 177 COG1410 MetH, Methionine synthase I, cobalamin-binding domain Amino acid transport and metabolism 46580492 Common - hypothetical protein DVU2087 2 COG3382 COG3382, Uncharacterized conserved protein Function unknown 46579093 Common - sigma-54 dependent transcriptional regulator/response regulator DVU0679 222 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46581231 Common - sigma-54 dependent transcriptional regulator DVU2827 172 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 46581134 Common - tail fiber protein, putative DVU2730 19 None None None 46581166 Common - hypothetical protein DVU2762 19 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 46580226 Common - hypothetical protein DVU1816 20 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 46581074 Nonpathogen - hypothetical protein DVU2670 1 None None None 46578806 Common - glycolate oxidase, subunit GlcD, putative DVU0390 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 46579314 Common pyrF orotidine 5`-phosphate decarboxylase DVU0901 159 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 46581041 Common - HAMP domain protein DVU2637 76 COG4564 COG4564, Signal transduction histidine kinase Signal transduction mechanisms 46578517 Common - TonB-dependent receptor DVU0100 44 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 46578697 Common - exopolysaccharide biosynthesis protein, putative DVU0281 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 46580452 Nonpathogen - hypothetical protein DVU2045 1 None None None 46581589 Common hup-4 DNA-binding protein HU DVU3187 139 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 46579418 Common - hypothetical protein DVU1005 2 None None None 46579809 Common - ISDvu2, transposase OrfB DVU1398 84 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 46580975 Common feoB ferrous iron transport protein B DVU2571 197 COG0370 FeoB, Fe2+ transport system protein B Inorganic ion transport and metabolism 46581102 Common - lipoprotein, putative DVU2698 10 None None None 46580944 Common - 2-hydroxyglutaryl-CoA dehydratase, D-component DVU2540 35 COG1775 HgdB, Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB Amino acid transport and metabolism 46578877 Common - 3-dehydroquinate synthase DVU0461 28 COG1465 COG1465, Predicted alternative 3-dehydroquinate synthase Amino acid transport and metabolism 46580042 Common - hypothetical protein DVU1631 140 COG1660 COG1660, Predicted P-loop-containing kinase General function prediction only 46580621 Common infA-2 translation initiation factor IF-1 DVU2216 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 46579484 Nonpathogen - hypothetical protein DVU1071 2 None None None 46578986 Nonpathogen - hypothetical protein DVU0572 1 None None None 46581205 Nonpathogen - hypothetical protein DVU2801 6 None None None 46581685 Common - L-lactate permease DVU3284 106 COG1620 LldP, L-lactate permease Energy production and conversion 46579147 Common - uroporphyrinogen III synthase/methyltransferase DVU0734 208 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 46579820 Nonpathogen - hypothetical protein DVU1409 1 None None None 46580150 Nonpathogen - hypothetical protein DVU1740 1 None None None 46578625 Nonpathogen - hypothetical protein DVU0208 1 None None None 46581507 Common - peptidoglycan-associated lipoprotein, putative DVU3104 154 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 46581582 Common - GGDEF domain protein DVU3180 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 46579624 Common - rhomboid family protein DVU1213 21 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 46579207 Common fabI enoyl-(acyl-carrier-protein) reductase DVU0794 231 COG0623 FabI, Enoyl- acyl-carrier-protein 46580105 Nonpathogen - tail fiber assembly protein, putative DVU1695 1 None None None 46579081 Common - HD domain protein DVU0667 118 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 46581282 Common - adenine specific DNA methyltransferase, putative DVU2878 87 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 46579546 Nonpathogen - hypothetical protein DVU1133 1 None None None 46581701 Nonpathogen - hypothetical protein DVU3300 1 None None None 46579925 Nonpathogen - hypothetical protein DVU1514 2 None None None 46580639 Common - conserved hypothetical protein TIGR00275 DVU2234 144 COG2081 COG2081, Predicted flavoproteins General function prediction only 46581690 Nonpathogen - hypothetical protein DVU3289 1 None None None 46581329 Common rplA 50S ribosomal protein L1 DVU2925 229 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 46579148 Common - MOSC domain protein DVU0735 32 COG2258 COG2258, Uncharacterized protein conserved in bacteria Function unknown 46580738 Common ndk nucleoside diphosphate kinase DVU2333 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 46580460 Common metG methionyl-tRNA synthetase DVU2055 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 46580221 Common - protoheme IX farnesyltransferase, putative DVU1811 158 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 46578803 Common - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family DVU0387 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 46578769 Common - alcohol dehydrogenase, iron-containing DVU0353 160 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 46581652 Common - hypothetical protein DVU3250 2 None None None 46580407 Nonpathogen - hypothetical protein DVU1998 1 None None None 46581477 Common - hypothetical protein DVU3074 97 COG2962 RarD, Predicted permeases General function prediction only 46578500 Common - hypothetical protein DVU0083 24 COG1547 COG1547, Uncharacterized conserved protein Function unknown 46581413 Common - aminotransferase, DegT/DnrJ/EryC1/StrS family DVU3010 197 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 46581622 Common - sigma-54 dependent transcriptional regulator/response regulator DVU3220 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46579830 Common - sigma-54 dependent transcriptional regulator/response regulator DVU1419 211 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46578464 Common - flagellar protein FliL DVU0047 39 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 46581606 Common purA adenylosuccinate synthetase DVU3204 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 46579538 Nonpathogen - hypothetical protein DVU1125 2 None None None 46581200 Common - electron transport complex protein RnfA, putative DVU2796 76 COG4657 RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA Energy production and conversion 46579824 Common - hypothetical protein DVU1413 42 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 46579784 Common divIVA cell-division initiation protein DivIVA DVU1373 29 COG3599 DivIVA, Cell division initiation protein Cell division and chromosome partitioning 46580182 Common - pyridine nucleotide-disulfide oxidoreductase DVU1772 205 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 46581640 Common - response regulator DVU3238 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46580287 Common ltaE threonine aldolase, low-specificity DVU1878 95 COG2008 GLY1, Threonine aldolase Amino acid transport and metabolism 46579954 Common hrpB ATP-dependent helicase HrpB DVU1543 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 46580433 Common - hypothetical protein DVU2026 17 None None None 46578459 Common - RNA methyltransferase, TrmH family, group 3 DVU0042 209 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 46579177 Common hup-2 DNA-binding protein HU DVU0764 210 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 46579794 Nonpathogen - hypothetical protein DVU1383 1 None None None 46579552 Common - bacteriophage DNA transposition B protein, putative DVU1139 10 COG2842 COG2842, Uncharacterized ATPase, putative transposase General function prediction only 46580194 Common - oxidoreductase, short-chain dehydrogenase/reductase family DVU1784 237 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 46579718 Common rpsS 30S ribosomal protein S19 DVU1307 246 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 46579932 Nonpathogen - hypothetical protein DVU1521 1 None None None 46579445 Nonpathogen - hypothetical protein DVU1032 1 None None None 46581033 Common - hypothetical protein DVU2629 2 None None None 46580683 Common - hypothetical protein DVU2278 52 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 46581244 Common - hypothetical protein DVU2840 5 None None None 46581325 Common rpmG 50S ribosomal protein L33 DVU2921 92 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 46580619 Nonpathogen - hypothetical protein DVU2214 1 None None None 46579423 Nonpathogen - hypothetical protein DVU1010 1 None None None 46578817 Nonpathogen - hypothetical protein DVU0401 1 None None None 46580727 Common - UTP--glucose-1-phosphate uridylyltransferase, putative DVU2322 7 COG4284 COG4284, UDP-glucose pyrophosphorylase Carbohydrate transport and metabolism 46580015 Nonpathogen - hypothetical protein DVU1604 1 None None None 46580376 Common - transcriptional regulator, rrf2 protein, putative DVU1967 174 COG1959 COG1959, Predicted transcriptional regulator Transcription 46578595 Nonpathogen - hypothetical protein DVU0178 1 None None None 46579130 Common - GGDEF domain/EAL domain protein DVU0717 178 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 46578707 Common - ABC transporter, ATP-binding protein DVU0291 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 46578601 Nonpathogen - hypothetical protein DVU0184 1 None None None 46579962 Common - HD domain protein DVU1551 83 COG2068 COG2068, Uncharacterized MobA-related protein General function prediction only 46580873 Nonpathogen - hypothetical protein DVU2469 1 None None None 46580175 Common thiH thiamine biosynthesis protein ThiH DVU1765 58 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 46578687 Common - response regulator DVU0271 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46578948 Nonpathogen - hmc operon protein 4 DVU0533 1 None None None 46579802 Nonpathogen - hypothetical protein DVU1391 1 None None None 46580867 Common recN DNA repair protein RecN DVU2463 203 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 46579605 Common - hypothetical protein DVU1194 2 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 46578903 Common purE phosphoribosylaminoimidazole carboxylase, catalytic subunit DVU0487 228 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 46580332 Common hupD hydrogenase expression/formation protein HupD DVU1923 74 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 46580190 Nonpathogen - hypothetical protein DVU1780 4 COG4728 COG4728, Uncharacterized protein conserved in bacteria Function unknown 46579043 Common - transcriptional regulator, TetR family DVU0629 78 COG1309 AcrR, Transcriptional regulator Transcription 46580575 Common - minor capsid protein C DVU2170 189 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 46579164 Common - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family DVU0751 175 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 46580128 Nonpathogen - hypothetical protein DVU1718 1 None None None 46581699 Nonpathogen - hypothetical protein DVU3298 1 None None None 46579163 Common - methyl-accepting chemotaxis protein DVU0750 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46581735 Common - sensory box histidine kinase DVU3335 222 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 46581537 Common - flavodoxin-like fold domain protein DVU3135 34 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 46579107 Common - molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative DVU0693 161 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 46579226 Common hrcA heat-inducible transcription repressor HrcA DVU0813 151 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 46579465 Common - CBS domain protein DVU1052 216 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 46580544 Common - histone deacetylase family protein DVU2139 161 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 46579109 Nonpathogen - hypothetical protein DVU0695 1 None None None 46580902 Nonpathogen - hypothetical protein DVU2498 1 None None None 46579215 Nonpathogen - hypothetical protein DVU0802 1 None None None 46579332 Common - hypothetical protein DVU0919 2 None None None 46579434 Common - hypothetical protein DVU1021 188 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 46579086 Nonpathogen - hypothetical protein DVU0672 1 None None None 46580427 Common - hypothetical protein DVU2020 20 None None None 46580499 Common thiG thiazole synthase DVU2094 166 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 46579985 Common rplY 50S ribosomal protein L25/general stress protein Ctc DVU1574 165 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 46580527 Common - type II/IV secretion system protein DVU2122 223 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 46579580 Common - methyl-accepting chemotaxis protein DVU1169 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 161343883 Common rpsU 30S ribosomal protein S21 DVU1792 74 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 46578680 Common - ferredoxin, 4Fe-4S, putative DVU0264 89 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 46580139 Common - killer protein, putative DVU1729 63 COG3549 HigB, Plasmid maintenance system killer protein General function prediction only 46580718 Common pgl 6-phosphogluconolactonase DVU2313 120 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 46579139 Common tgt queuine tRNA-ribosyltransferase DVU0726 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 46578761 Nonpathogen - hypothetical protein DVU0345 1 None None None 46581257 Common - phage baseplate assembly protein V, putative DVU2853 21 COG4384 COG4384, Mu-like prophage protein gp45 Function unknown 46580521 Nonpathogen - pilin, putative DVU2116 1 COG3847 Flp, Flp pilus assembly protein, pilin Flp Intracellular trafficking and secretion 46579705 Common - hypothetical protein DVU1294 137 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 46581127 Common - tail protein, putative DVU2723 19 COG4379 COG4379, Mu-like prophage tail protein gpP General function prediction only 46581566 Common - ABC transporter, permease protein DVU3164 158 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 46581313 Common - transcriptional regulator, MarR family DVU2909 122 COG1846 MarR, Transcriptional regulators Transcription 46580299 Common hemC porphobilinogen deaminase DVU1890 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 46581648 Common - RND efflux system, outer membrane protein, NodT family DVU3246 117 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 46581470 Common hypF [NiFe] hydrogenase maturation protein HypF DVU3067 109 COG0068 HypF, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 46580144 Nonpathogen - hypothetical protein DVU1734 1 None None None 46581627 Common - hypothetical protein DVU3225 2 None None None 46580555 Common - dnaK suppressor protein, putative DVU2150 160 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 46580586 Common - antirepressor, putative DVU2181 26 COG3646 COG3646, Uncharacterized phage-encoded protein Function unknown 46579494 Common - iron-sulfur cluster-binding protein DVU1081 7 COG0348 NapH, Polyferredoxin Energy production and conversion 46580992 Common - DNA-binding response regulator DVU2588 216 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 46579075 Common - dihydrouridine synthase family protein DVU0661 207 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 46580913 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase DVU2509 210 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 46579100 Common - iron-sulfur cluster-binding protein DVU0686 90 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 46578797 Common nhaC-1 Na+/H+ antiporter NhaC DVU0381 69 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 46580467 Common - ATP-dependent DNA helicase, UvrD/REP family DVU2062 174 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 46579393 Common - DAK2 domain protein DVU0980 76 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 46581270 Common - hypothetical protein DVU2866 26 COG3926 zliS, Putative secretion activating protein General function prediction only 46579459 Nonpathogen - hypothetical protein DVU1046 1 None None None 46579113 Common - methyl-accepting chemotaxis protein DVU0700 153 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46580563 Nonpathogen - hypothetical protein DVU2158 1 None None None 46578646 Nonpathogen - hypothetical protein DVU0229 1 None None None 46580133 Nonpathogen - hypothetical protein DVU1723 1 None None None 46580805 Common - hydrogenase, putative DVU2400 31 COG1453 COG1453, Predicted oxidoreductases of the aldo/keto reductase family General function prediction only 46579247 Common rnhB ribonuclease HII DVU0834 234 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 46580457 Common - glycosyl transferase, group 2 family protein DVU2052 205 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 46579004 Nonpathogen - hypothetical protein DVU0590 1 None None None 46579235 Nonpathogen - hypothetical protein DVU0822 1 None None None 46580698 Common cooF iron-sulfur protein CooF DVU2293 143 COG1142 HycB, Fe-S-cluster-containing hydrogenase components 2 Energy production and conversion 46579885 Nonpathogen - hypothetical protein DVU1474 1 None None None 46581051 Common - endoribonuclease, L-PSP family DVU2647 182 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 46579007 Common - L-lysine exporter, putative DVU0593 82 COG1279 COG1279, Lysine efflux permease General function prediction only 46580504 Common - carbon monoxide dehydrogenase accessory protein CooC, putative DVU2099 26 COG3640 CooC, CO dehydrogenase maturation factor Cell division and chromosome partitioning 46581047 Common htpG heat shock protein 90 DVU2643 147 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 46581672 Common cydB cytochrome d ubiquinol oxidase, subunit II DVU3270 155 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 46580547 Common surE acid phosphatase SurE DVU2142 186 COG0496 SurE, Predicted acid phosphatase General function prediction only 46580823 Common - vanZ-like family protein DVU2418 12 COG5652 COG5652, Predicted integral membrane protein Function unknown 46580036 Common - phosphatase, YrbI family DVU1625 111 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 46579432 Common - hypothetical protein DVU1019 38 COG3672 COG3672, Predicted periplasmic protein Function unknown 46579069 Common - PHP domain protein DVU0655 117 COG0613 COG0613, Predicted metal-dependent phosphoesterases (PHP family) General function prediction only 46581077 Common - anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation DVU2673 50 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 46579591 Nonpathogen - hypothetical protein DVU1180 11 COG2104 ThiS, Sulfur transfer protein involved in thiamine biosynthesis Coenzyme metabolism 46578831 Common pepA cytosol aminopeptidase DVU0415 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 46580785 Common - ABC transporter, ATP-binding protein DVU2380 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 46579812 Common - hypothetical protein DVU1401 153 COG0679 COG0679, Predicted permeases General function prediction only 46579557 Common - transcriptional regulator, Cro/CI family DVU1144 31 COG2932 COG2932, Predicted transcriptional regulator Transcription 46581222 Nonpathogen - hypothetical protein DVU2818 1 None None None 46578474 Common - transcriptional regulator, TetR family DVU0057 63 COG1309 AcrR, Transcriptional regulator Transcription 46581288 Common - putative aminopeptidase 1 DVU2884 44 COG1362 LAP4, Aspartyl aminopeptidase Amino acid transport and metabolism 46580841 Common - hypothetical protein DVU2436 32 COG1896 COG1896, Predicted hydrolases of HD superfamily General function prediction only 46578530 Common hisI phosphoribosyl-AMP cyclohydrolase DVU0113 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 46579281 Common cdsA phosphatidate cytidylyltransferase DVU0868 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 46578604 Common - GGDEF domain protein DVU0187 167 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 46578539 Nonpathogen - hypothetical protein DVU0122 1 None None None 46579479 Common gpt xanthine-guanine phosphoribosyltransferase DVU1066 79 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 46580281 Nonpathogen - hypothetical protein DVU1872 1 None None None 46581523 Nonpathogen - hypothetical protein DVU3120 1 None None None 46580266 Common - methyl-accepting chemotaxis protein DVU1857 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46578572 Nonpathogen - type I phosphodiesterase/nucleotide pyrophosphatase family protein DVU0155 18 COG3379 COG3379, Uncharacterized conserved protein Function unknown 46579415 Common - hypothetical protein DVU1002 26 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 46581398 Common - glycosyl transferase, group 1 family protein DVU2995 22 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46581593 Common rluC ribosomal large subunit pseudouridine synthase C DVU3191 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 46578668 Nonpathogen - hypothetical protein DVU0252 1 None None None 46578652 Nonpathogen - hypothetical protein DVU0235 1 None None None 46578490 Common - CDP-glucose-4,6-dehydratase, putative DVU0073 225 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 46580853 Common metK S-adenosylmethionine synthetase DVU2449 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 46579197 Common - hypothetical protein DVU0784 69 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 46579944 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase DVU1533 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 46580603 Nonpathogen - hypothetical protein DVU2198 1 None None None 46580013 Common clpA ATP-dependent Clp protease, ATP-binding subunit ClpA DVU1602 237 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 46580092 Common - GAF domain protein DVU1682 2 COG3605 PtsP, Signal transduction protein containing GAF and PtsI domains Signal transduction mechanisms 46578997 Common - lipoprotein, putative DVU0583 94 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 46580293 Common - methyl-accepting chemotaxis protein DVU1884 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46579536 Nonpathogen - hypothetical protein DVU1123 2 None None None 46581066 Common - hypothetical protein DVU2662 10 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46581486 Nonpathogen - hypothetical protein DVU3083 1 None None None 46581752 Common queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase DVU3351 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 46579121 Nonpathogen - hypothetical protein DVU0708 1 None None None 46580656 Common - DNA-binding protein DVU2251 87 COG3837 COG3837, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 46578644 Common - hypothetical protein DVU0227 15 COG3013 COG3013, Uncharacterized conserved protein Function unknown 46578898 Common - sensory box histidine kinase/response regulator DVU0482 187 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46578710 Nonpathogen - glycosyl transferase, group 2 family protein DVU0294 1 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 46578717 Nonpathogen - hypothetical protein DVU0301 1 None None None 46579152 Common - conserved hypothetical protein TIGR00296 DVU0739 72 COG2078 AMMECR1, Uncharacterized conserved protein Function unknown 46579294 Common - elongation factor G DVU0881 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 46579583 Nonpathogen - hypothetical protein DVU1172 1 None None None 46579903 Nonpathogen - hypothetical protein DVU1492 1 None None None 46578438 Nonpathogen - hypothetical protein DVU0021 8 COG4122 COG4122, Predicted O-methyltransferase General function prediction only 46580379 Common - response regulator DVU1970 129 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46581040 Nonpathogen - hypothetical protein DVU2636 6 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 46579251 Common - hypothetical protein DVU0838 70 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 46581213 Nonpathogen - cytochrome c3 DVU2809 3 None None None 46580982 Common - response regulator DVU2578 169 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46578862 Common - sodium/solute symporter family protein DVU0446 167 COG4147 DhlC, Predicted symporter General function prediction only 46580474 Common - DNA processing protein DprA, putative DVU2069 208 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 46580445 Nonpathogen - hypothetical protein DVU2038 1 COG3831 COG3831, Uncharacterized conserved protein Function unknown 46579321 Common - iron-sulfur cluster-binding protein, putative DVU0908 38 COG3894 COG3894, Uncharacterized metal-binding protein General function prediction only 46578522 Common - glutamine ABC transporter, ATP-binding protein DVU0105 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 46579807 Nonpathogen - hypothetical protein DVU1396 1 None None None 46578800 Common flr flavoredoxin DVU0384 84 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 46579999 Common hpt hypoxanthine phosphoribosyltransferase DVU1588 151 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 46578619 Nonpathogen - holin DVU0202 1 COG4824 COG4824, Phage-related holin (Lysis protein) General function prediction only 46579073 Nonpathogen - hypothetical protein DVU0659 1 None None None 46580812 Common - hypothetical protein DVU2407 8 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 46580809 Nonpathogen hdrC heterodisulfide reductase, C subunit DVU2404 21 COG1150 HdrC, Heterodisulfide reductase, subunit C Energy production and conversion 46579770 Common - hypothetical protein DVU1359 14 None None None 46580429 Common - hypothetical protein DVU2022 30 COG1002 COG1002, Type II restriction enzyme, methylase subunits Defense mechanisms 46581527 Nonpathogen - hypothetical protein DVU3124 1 None None None 46580454 Nonpathogen - hypothetical protein DVU2047 1 None None None 46580080 Common - hypothetical protein DVU1670 25 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 46580414 Nonpathogen - hypothetical protein DVU2006 2 None None None 46580744 Common - ribosomal protein L11 methyltransferase, putative DVU2339 173 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 46581531 Nonpathogen - hypothetical protein DVU3129 1 None None None 46581561 Common gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) DVU3159 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 46581296 Common - hypothetical protein DVU2892 81 COG1469 COG1469, Uncharacterized conserved protein Function unknown 46580316 Common ugd UDP-glucose 6-dehydrogenase DVU1907 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 46581125 Common - phage tail tape measure protein, TP901 family, putative DVU2721 18 COG3941 COG3941, Mu-like prophage protein General function prediction only 46579858 Common - CgeB family protein DVU1447 20 COG4641 COG4641, Uncharacterized protein conserved in bacteria Function unknown 46581771 Nonpathogen - hypothetical protein DVU3370 1 None None None 46579722 Common rpmC 50S ribosomal protein L29 DVU1311 162 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 46581275 Common - minor capsid protein C DVU2871 184 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 46581433 Common ackA acetate kinase DVU3030 162 COG0282 ackA, Acetate kinase Energy production and conversion 46579683 Common - general secretion pathway protein E, putative DVU1272 174 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 46581351 Common - anaerobic ribonucleoside triphosphate reductase DVU2947 104 COG1328 NrdD, Oxygen-sensitive ribonucleoside-triphosphate reductase Nucleotide transport and metabolism 46579182 Common - pyridoxamine kinase DVU0769 104 COG2240 PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase Coenzyme metabolism 46578661 Nonpathogen - hypothetical protein DVU0244 2 COG4564 COG4564, Signal transduction histidine kinase Signal transduction mechanisms 46579851 Common rnc ribonuclease III DVU1440 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 46581361 Common - hypothetical protein DVU2958 40 COG0730 COG0730, Predicted permeases General function prediction only 46580716 Nonpathogen - hypothetical protein DVU2311 1 None None None 46579452 Common - lipoprotein, putative DVU1039 5 COG4314 NosL, Predicted lipoprotein involved in nitrous oxide reduction Energy production and conversion 46578737 Common - pantothenate kinase DVU0321 124 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 46580059 Common mutS DNA mismatch repair protein DVU1649 202 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 46580124 Common - hypothetical protein DVU1714 10 None None None 46580540 Nonpathogen - hypothetical protein DVU2135 1 None None None 46581118 Common - hypothetical protein DVU2714 7 COG5003 COG5003, Mu-like prophage protein gp37 General function prediction only 46581029 Nonpathogen - hypothetical protein DVU2625 1 None None None 46579305 Common aroL shikimate kinase II DVU0892 191 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 46581347 Common pyrE orotate phosphoribosyltransferase DVU2943 191 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 46578840 Common cls cardiolipin synthetase DVU0424 142 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 46579017 Nonpathogen - hypothetical protein DVU0603 1 None None None 46578444 Common - hypothetical protein DVU0027 28 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 46579675 Common - transglycosylase SLT domain protein DVU1264 177 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 46579708 Nonpathogen - hypothetical protein DVU1297 1 None None None 46580509 Common - iron-sulfur cluster-binding/ATPase domain protein DVU2104 33 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 46580142 Nonpathogen - hypothetical protein DVU1732 1 None None None 46578453 Nonpathogen - hypothetical protein DVU0036 1 None None None 46578545 Common - hypothetical protein DVU0128 85 COG0628 PerM, Predicted permease General function prediction only 46579636 Nonpathogen - hypothetical protein DVU1225 1 None None None 46579355 Common - transcriptional regulator, Fur family DVU0942 199 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 46581420 Common - hypothetical protein DVU3017 37 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 46579643 Common glnB-1 nitrogen regulatory protein P-II DVU1232 187 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 46581303 Nonpathogen - hypothetical protein DVU2899 3 None None None 46581411 Common - NeuB family protein DVU3008 78 COG2089 SpsE, Sialic acid synthase Cell envelope biogenesis, outer membrane 46579279 Common dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase DVU0866 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 46580967 Common - beta-ketoacyl synthase, putative DVU2563 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 46579634 Common - hypothetical protein DVU1223 32 COG1944 COG1944, Uncharacterized conserved protein Function unknown 46578968 Nonpathogen - hypothetical protein DVU0553 1 None None None 46579660 Common fabD malonyl CoA-acyl carrier protein transacylase DVU1249 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 46579992 Nonpathogen - hypothetical protein DVU1581 1 None None None 46580910 Common murD UDP-N-acetylmuramoylalanine--D-glutamate ligase DVU2506 207 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 46579773 Common - hypothetical protein DVU1362 18 None None None 46579022 Common - methyl-accepting chemotaxis protein DVU0608 142 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46580839 Common - hypothetical protein DVU2434 5 None None None 46580073 Common - permease, putative DVU1663 39 COG0795 COG0795, Predicted permeases General function prediction only 46581642 Common - peptidase, M23/M37 family DVU3240 191 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 46580617 Nonpathogen - hypothetical protein DVU2212 7 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 46579266 Common - hypothetical protein DVU0853 121 COG1690 RtcB, Uncharacterized conserved protein Function unknown 46579525 Nonpathogen - hypothetical protein DVU1112 1 None None None 46581510 Nonpathogen - cytochrome c family protein DVU3107 7 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 46580800 Common - sensor histidine kinase DVU2395 221 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46581298 Common - sigma-54 dependent transcriptional regulator DVU2894 171 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 46578838 Common - sensory box/GGDEF domain/EAL domain protein DVU0422 192 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 46581017 Common - hypothetical protein DVU2613 16 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 46581261 Nonpathogen - hypothetical protein DVU2857 1 None None None 46580386 Common groES chaperonin, 10 kDa DVU1977 216 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 46579408 Common - ThiJ/PfpI family protein DVU0995 140 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 46580097 Nonpathogen - glycosyl transferase, group 2 family protein DVU1687 1 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 46581743 Nonpathogen - hypothetical protein DVU3342 1 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 46580155 Nonpathogen - DNA-binding protein DVU1745 1 COG1396 HipB, Predicted transcriptional regulators Transcription 46578792 Nonpathogen - hypothetical protein DVU0376 1 None None None 46579214 Common uvrC excinuclease ABC, C subunit DVU0801 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 46579972 Common - molybdenum-binding protein, HTH domain DVU1561 67 COG2005 ModE, N-terminal domain of molybdenum-binding protein General function prediction only 46580776 Common - N-acetylmuramoyl-L-alanine amidase, putative DVU2371 182 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 46578859 Common - exonulcease, putative DVU0443 67 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 46578931 Common flgI flagellar basal body P-ring protein DVU0516 104 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 46579255 Nonpathogen - hypothetical protein DVU0842 1 None None None 46580848 Common - flagellin DVU2444 113 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 46579938 Common - site-specific recombinase, phage integrase family DVU1527 107 COG0582 XerC, Integrase DNA replication, recombination, and repair 46579288 Common - fumarylacetoacetate hydrolase family protein DVU0875 180 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 46580513 Nonpathogen - hypothetical protein DVU2108 18 COG1433 COG1433, Uncharacterized conserved protein Function unknown 46580573 Common - major head protein DVU2168 11 None None None 46580071 Nonpathogen - hypothetical protein DVU1661 1 None None None 46579918 Nonpathogen - hypothetical protein DVU1507 1 None None None 46581186 Nonpathogen - hypothetical protein DVU2782 1 None None None 46578748 Nonpathogen - hypothetical protein DVU0332 1 None None None 46579511 Common - adenine specific DNA methyltransferase, putative DVU1098 110 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 46580734 Common hypB hydrogenase accessory protein HypB DVU2329 140 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 46580278 Common - methyl-accepting chemotaxis protein DVU1869 138 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46580003 Common - arginine N-succinyltransferase, beta subunit, putative DVU1592 131 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46578773 Nonpathogen - hypothetical protein DVU0357 8 None None None 46579609 Common ribH riboflavin synthase, beta subunit DVU1198 230 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 46581336 Common - conserved hypothetical protein TIGR01777 DVU2932 146 COG1090 COG1090, Predicted nucleoside-diphosphate sugar epimerase General function prediction only 46579597 Common mazG nucleoside triphosphate pyrophosphohydrolase DVU1186 156 COG3956 COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain General function prediction only 46581670 Common - hypothetical protein DVU3268 33 COG1915 COG1915, Uncharacterized conserved protein Function unknown 46581193 Common - Gpr1/Fun34/YaaH family protein DVU2789 49 COG1584 COG1584, Predicted membrane protein Function unknown 46581383 Common pssA CDP-diacylglycerol--serine O-phosphatidyltransferase DVU2980 150 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 46579256 Common - hypothetical protein DVU0843 2 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 46581031 Nonpathogen - hypothetical protein DVU2627 1 None None None 46578598 Common modB molybdenum ABC transporter, permease protein DVU0181 230 COG4149 ModC, ABC-type molybdate transport system, permease component Inorganic ion transport and metabolism 46581021 Common - sodium/calcium exchanger family protein DVU2617 9 COG0530 ECM27, Ca2+/Na+ antiporter Inorganic ion transport and metabolism 46581145 Common livG high-affinity branched chain amino acid ABC transporter, ATP-binding protein DVU2741 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 46581140 Common - hypothetical protein DVU2736 2 None None None 46579658 Common - hypothetical protein DVU1247 2 COG3087 FtsN, Cell division protein Cell division and chromosome partitioning 46580960 Nonpathogen - hypothetical protein DVU2556 1 None None None 46580897 Common - iron-sulfur cluster-binding protein DVU2493 73 COG0348 NapH, Polyferredoxin Energy production and conversion 46578752 Common - aminotransferase, DegT/DnrJ/EryC1/StrS family DVU0336 193 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 46579870 Common - hypothetical protein DVU1459 210 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 46578812 Common hup-1 DNA-binding protein HU DVU0396 204 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 46580751 Nonpathogen - hypothetical protein DVU2346 1 None None None 46579050 Common - response regulator/GGDEF domain protein DVU0636 204 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 46578921 Common - DHH family protein DVU0506 70 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 46581259 Common - tail/DNA circulation protein, putative DVU2855 21 COG4228 COG4228, Mu-like prophage DNA circulation protein General function prediction only 46579879 Common - peptidase/PDZ domain protein DVU1468 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 46579764 Common dnaE DNA polymerase III, alpha subunit DVU1353 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 46580273 Common - DNA-binding protein HU, beta subunit, putative DVU1864 204 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 46581227 Common - TRAP transporter, DctMQ subunit DVU2823 126 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 46579651 Common - hypothetical protein DVU1240 2 COG2431 COG2431, Predicted membrane protein Function unknown 46581429 Common - L-lactate permease family protein DVU3026 103 COG1620 LldP, L-lactate permease Energy production and conversion 46579743 Common selD selenide, water dikinase, selenocysteine-containing DVU1332 153 COG0709 SelD, Selenophosphate synthase Amino acid transport and metabolism 46579838 Common - response regulator DVU1427 207 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 46579508 Common argG argininosuccinate synthase DVU1095 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 46581519 Common prfC peptide chain release factor 3 DVU3116 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 46580983 Common - TPR domain protein DVU2579 80 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 46579059 Common - methyl-accepting chemotaxis protein DVU0645 140 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46580204 Nonpathogen - hypothetical protein DVU1794 1 None None None 46579519 Nonpathogen - hypothetical protein DVU1106 1 None None None 46580224 Common - cytochrome c oxidase, subunit III, putative DVU1814 159 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 46580817 Common - sensory box histidine kinase DVU2412 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46580677 Common - formate acetyltransferase, putative DVU2272 58 COG1882 PflD, Pyruvate-formate lyase Energy production and conversion 46580236 Nonpathogen - hypothetical protein DVU1826 6 None None None 46579822 Common thiC thiamine biosynthesis protein ThiC DVU1411 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 46581104 Nonpathogen - hypothetical protein DVU2700 1 None None None 46579936 Nonpathogen - hypothetical protein DVU1525 1 COG1391 GlnE, Glutamine synthetase adenylyltransferase Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms 46580165 Nonpathogen - hypothetical protein DVU1755 1 None None None 46581220 Common - multidrug resistance protein DVU2816 181 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 46580946 Nonpathogen - hypothetical protein DVU2542 1 None None None 46580651 Common - S1 RNA binding domain protein DVU2246 147 COG2183 Tex, Transcriptional accessory protein Transcription 46581203 Common - transcriptional regulator, MarR family DVU2799 141 COG1846 MarR, Transcriptional regulators Transcription 46581638 Common hflX GTP-binding protein HflX DVU3236 211 COG2262 HflX, GTPases General function prediction only 46578820 Nonpathogen - dissimilatory sulfite reductase B DVU0404 5 None None None 46580188 Common - cation efflux family protein DVU1778 200 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 46578695 Common - sulfate permease family protein DVU0279 161 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 46581195 Common - cytochrome c family protein DVU2791 14 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 46579467 Common - hydrolase, HAD-superfamily, subfamily IIIA DVU1054 124 COG0241 HisB, Histidinol phosphatase and related phosphatases Amino acid transport and metabolism 46581585 Common rbO desulfoferrodoxin DVU3183 34 COG2033 COG2033, Desulfoferrodoxin Energy production and conversion 46579166 Common - amino acid ABC transporter, ATP-binding protein DVU0753 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 46580732 Nonpathogen - hypothetical protein DVU2327 1 None None None 46579482 Common - branched chain amino acid ABC transporter, permease protein DVU1069 109 COG1079 COG1079, Uncharacterized ABC-type transport system, permease component General function prediction only 46580999 Nonpathogen - hypothetical protein DVU2595 1 None None None 46579489 Common - conserved hypothetical protein TIGR00278 DVU1076 182 COG0759 COG0759, Uncharacterized conserved protein Function unknown 46579836 Common gcvPA glycine dehydrogenase subunit 1 DVU1425 172 COG0403 GcvP, Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain Amino acid transport and metabolism 46580040 Common yfiA ribosomal subunit interface protein DVU1629 138 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 46581472 Common - conserved hypothetical protein TIGR00247 DVU3069 185 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 46578879 Common aroA 3-phosphoshikimate 1-carboxyvinyltransferase DVU0463 228 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 46578988 Nonpathogen - hypothetical protein DVU0574 1 None None None 46580973 Common - peptidyl-prolyl cis-trans isomerase, FKBP-type DVU2569 152 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 46580121 Nonpathogen - hypothetical protein DVU1711 1 None None None 46581076 Common - hypothetical protein DVU2672 128 COG2860 COG2860, Predicted membrane protein Function unknown 46580736 Common - Smr family protein DVU2331 101 COG2840 COG2840, Uncharacterized protein conserved in bacteria Function unknown 46579506 Common - HAD-superfamily hydrolase, subfamily IA, variant 3 DVU1093 3 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 46579667 Common - heptosyltransferase family protein DVU1256 67 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 46581604 Common - hydrolase, TatD family DVU3202 233 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 46580462 Common - hypothetical protein DVU2057 58 COG1774 COG1774, Uncharacterized homolog of PSP1 Function unknown 46578771 Common - sensory box/GGDEF domain protein DVU0355 192 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 46578675 Common - DNA-binding response regulator DVU0259 217 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46578910 Common - hypothetical protein DVU0495 105 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 46578520 Common - cation ABC transporter, ATP-binding protein, putative DVU0103 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 46581357 Common - GGDEF domain protein DVU2954 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 46580305 Common rpsT 30S ribosomal protein S20 DVU1896 196 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 46580368 Common - EAL domain/GGDEF domain protein DVU1959 164 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 46579117 Common lepB signal peptidase I DVU0704 212 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 46579920 Nonpathogen - hypothetical protein DVU1509 7 None None None 46578900 Common - ABC transporter, ATP-binding protein DVU0484 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 46578870 Nonpathogen - hypothetical protein DVU0454 1 None None None 46580949 Common - alcohol dehydrogenase, iron-containing DVU2545 174 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 46580691 Common - hydrogenase, CooM subunit, putative DVU2286 210 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 46581761 Common - ParB family protein DVU3360 186 COG1475 Spo0J, Predicted transcriptional regulators Transcription 46579927 Nonpathogen - hypothetical protein DVU1516 1 None None None 46580681 Common - hypothetical protein DVU2276 17 COG0730 COG0730, Predicted permeases General function prediction only 46579240 Common - glycolate oxidase, subunit GlcD, putative DVU0827 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 46578502 Common trpB-1 tryptophan synthase subunit beta DVU0085 228 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 46580119 Common hsdM type I restriction-modification system, M subunit DVU1709 163 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 46580722 Common - methyl-accepting chemotaxis protein, putative DVU2317 112 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46579545 Common - hypothetical protein DVU1132 4 None None None 46579595 Nonpathogen - hypothetical protein DVU1184 1 None None None 46580917 Common mraZ hypothetical protein DVU2513 140 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 46579610 Common ribAB 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II DVU1199 232 COG0807 RibA, GTP cyclohydrolase II Coenzyme metabolism 46579826 Common - AsmA family protein DVU1415 14 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 46579767 Common - HD domain protein DVU1356 9 None None None 46580642 Common - cobalamin biosynthesis protein CobD, putative DVU2237 149 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 46580993 Nonpathogen - hypothetical protein DVU2589 1 None None None 46581168 Common - nitroreductase family protein DVU2764 113 COG0778 NfnB, Nitroreductase Energy production and conversion 46581302 Common - hypothetical protein DVU2898 5 COG2348 COG2348, Uncharacterized protein involved in methicillin resistance Defense mechanisms 46579695 Common priA primosomal protein n' DVU1284 212 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 46580459 Nonpathogen - hypothetical protein DVU2054 1 None None None 46581233 Nonpathogen - hypothetical protein DVU2829 3 None None None 46578582 Common - oligopeptide/dipeptide ABC transporter, ATP-binding protein DVU0165 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 46579362 Common - hypothetical protein DVU0949 15 COG5266 CbiK, ABC-type Co2+ transport system, periplasmic component Inorganic ion transport and metabolism 46580565 Nonpathogen - hypothetical protein DVU2160 1 None None None 46580025 Common - iron-sulfur cluster-binding protein DVU1614 155 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 46581794 Nonpathogen - hypothetical protein DVU3393 1 None None None 46581350 Nonpathogen - hypothetical protein DVU2946 1 None None None 46580932 Nonpathogen - hypothetical protein DVU2528 1 None None None 46581657 Nonpathogen - transcriptional regulator, CopG family DVU3255 6 COG1598 COG1598, Uncharacterized conserved protein Function unknown 46580049 Common - hypothetical protein DVU1638 34 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 46580101 Nonpathogen - hypothetical protein DVU1691 1 None None None 46580400 Common - hypothetical protein DVU1991 6 None None None 46580797 Nonpathogen - type III secretion chaperone, CesT family DVU2392 1 None None None 46580089 Common idi isopentenyl-diphosphate delta-isomerase DVU1679 3 COG1443 Idi, Isopentenyldiphosphate isomerase Lipid metabolism 46581479 Nonpathogen - hypothetical protein DVU3076 6 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 46579621 Common - hypothetical protein DVU1210 45 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 46580317 Common pdxJ pyridoxal phosphate biosynthetic protein PdxJ DVU1908 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 46581272 Nonpathogen - hypothetical protein DVU2868 1 None None None 46581399 Common - NAD-dependent epimerase/dehydratase family protein DVU2996 230 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 46580485 Nonpathogen - hypothetical protein DVU2080 1 None None None 46578510 Common - conserved domain protein/glycosyl transferase, group 1 family protein DVU0093 215 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 46579340 Common rplU 50S ribosomal protein L21 DVU0927 215 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 46578627 Common - tail sheath protein, putative DVU0210 21 COG4386 COG4386, Mu-like prophage tail sheath protein gpL General function prediction only 46578881 Common - anthranilate synthase, component I DVU0465 223 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 46580523 Common - hypothetical protein DVU2118 68 COG3745 CpaB, Flp pilus assembly protein CpaB Intracellular trafficking and secretion 46579078 Common - cysteine desulfurase DVU0664 238 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 46581726 Common - multidrug resistance protein, Smr family DVU3326 2 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 46579095 Common - sensor histidine kinase/response regulator DVU0681 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46581491 Common - ATP-dependent RNA helicase, DEAD/DEAH box family DVU3088 233 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 46580011 Nonpathogen - adenylate cyclase DVU1600 6 COG1437 CyaB, Adenylate cyclase, class 2 (thermophilic) Nucleotide transport and metabolism 46580940 Common rpmI 50S ribosomal protein L35 DVU2536 150 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 46580310 Common - peptidyl-prolyl cis-trans isomerase domain protein DVU1901 81 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 46581545 Common - iron-sulfur cluster-binding protein DVU3143 153 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 46579994 Common - TPR domain protein DVU1583 155 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 46581095 Nonpathogen - hypothetical protein DVU2691 1 None None None 46581727 Common - multidrug resistance protein, Smr family DVU3327 46 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 46579443 Common - universal stress protein family DVU1030 87 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 46579800 Common - hypothetical protein DVU1389 2 None None None 46581369 Common - response regulator DVU2966 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 46578850 Common - Ech hydrogenase, subunit EchA, putative DVU0434 209 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 46578888 Nonpathogen - hypothetical protein DVU0472 1 None None None 46581693 Common - pyridine nucleotide-disulfide oxidoreductase DVU3292 204 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 46581136 Common - hypothetical protein DVU2732 3 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 46579221 Common gatA glutamyl-tRNA(Gln) amidotransferase, A subunit DVU0808 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 46580447 Nonpathogen - hypothetical protein DVU2040 1 None None None 46579566 Nonpathogen - hypothetical protein DVU1155 1 None None None 46578864 Common gmd GDP-mannose 4,6-dehydratase DVU0448 218 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 46581235 Nonpathogen - hypothetical protein DVU2831 1 None None None 46579115 Nonpathogen - cytochrome c family protein DVU0702 12 None None None 46580257 Common - hypothetical protein DVU1848 53 COG1238 COG1238, Predicted membrane protein Function unknown 46580152 Common - prevent-host-death family protein DVU1742 48 COG2161 StbD, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 46580950 Common - sensory box histidine kinase DVU2546 188 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 46579795 Common pyrR pyrimidine regulatory protein PyrR DVU1384 120 COG2065 PyrR, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase Nucleotide transport and metabolism 46581250 Nonpathogen - hypothetical protein DVU2846 1 None None None 46579330 Common atpE ATP synthase F0, C subunit DVU0917 49 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 46580095 Common - conserved hypothetical protein TIGR00046 DVU1685 141 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 46579339 Nonpathogen - hypothetical protein DVU0926 1 None None None 46579200 Common - hypothetical protein DVU0787 2 None None None 46581629 Common - flagellar basal body-associated protein, putative DVU3227 3 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 46581105 Nonpathogen - hypothetical protein DVU2701 1 None None None 46580346 Common - phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative DVU1937 90 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 46578519 Common - cation ABC transporter, periplasmic binding protein DVU0102 10 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 46579244 Common - PTS system, IID component, putative DVU0831 39 COG3716 ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID Carbohydrate transport and metabolism 46580135 Common - hypothetical protein DVU1725 10 None None None 46580497 Common - thiamine biosynthesis protein ThiF DVU2092 222 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 46581575 Nonpathogen - hypothetical protein DVU3173 1 None None None 46579703 Nonpathogen - hypothetical protein DVU1292 1 None None None 46581568 Common - alanyl-tRNA synthetase family protein, putative DVU3166 157 COG2872 COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain General function prediction only 46580173 Nonpathogen - hypothetical protein DVU1763 1 None None None 46581462 Common ftsY signal recognition particle-docking protein FtsY DVU3059 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 46580324 Nonpathogen - hypothetical protein DVU1915 1 None None None 46580551 Nonpathogen - hypothetical protein DVU2146 1 None None None 46579715 Common rplD 50S ribosomal protein L4 DVU1304 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 46579016 Common - hypothetical protein DVU0602 2 None None None 46580584 Common - ISDvu2, transposase OrfA DVU2179 31 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 46579425 Common - hemolysin-type calcium-binding repeat protein DVU1012 75 None None None 46579749 Common - hypothetical protein DVU1338 10 None None None 46578693 Common - transcriptional regulator, AraC family DVU0277 131 COG3449 COG3449, DNA gyrase inhibitor DNA replication, recombination, and repair 46579370 Common rpsR 30S ribosomal protein S18 DVU0957 206 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 46581435 Common - hypothetical protein DVU3032 84 COG1556 COG1556, Uncharacterized conserved protein Function unknown 46581465 Common - sensor histidine kinase/response regulator DVU3062 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 46580405 Common - quaternary ammonium compound-resistance protein QacC, putative DVU1996 134 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 46578760 Common - methyl-accepting chemotaxis protein DVU0344 139 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 46581311 Common umuD umuD protein DVU2907 164 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 46579174 Common - lipoprotein, putative DVU0761 2 None None None 46579312 Common - hypothetical protein DVU0899 33 COG2052 COG2052, Uncharacterized protein conserved in bacteria Function unknown 46579832 Common - hypothetical protein DVU1421 2 None None None 46580919 Common - HD domain protein DVU2515 116 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 46579209 Common hisD histidinol dehydrogenase DVU0796 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 46580557 Nonpathogen - hypothetical protein DVU2152 1 None None None 46581650 Common - AcrB/AcrD/AcrF family protein DVU3248 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 46580146 Nonpathogen - hypothetical protein DVU1736 1 None None None 46580550 Common - chloramphenicol acetyltransferase, putative DVU2145 17 COG4845 COG4845, Chloramphenicol O-acetyltransferase Defense mechanisms 46579872 Common hemA glutamyl-tRNA reductase DVU1461 180 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 46580374 Nonpathogen - hypothetical protein DVU1965 1 None None None 46581509 Common - GGDEF domain protein DVU3106 177 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 46578782 Common - 5-formyltetrahydrofolate cyclo-ligase family protein DVU0366 184 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 46579233 Nonpathogen - hypothetical protein DVU0820 1 None None None 46579383 Nonpathogen - lipoprotein, putative DVU0970 1 None None None 46579230 Nonpathogen - hypothetical protein DVU0817 1 None None None 46580545 Common tmk thymidylate kinase DVU2140 232 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 46580239 Nonpathogen - hypothetical protein DVU1829 1 None None None 46578457 Common - hypothetical protein DVU0040 4 None None None 46578593 Common - glycerophosphoryl diester phosphodiesterase family protein DVU0176 164 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 46580634 Common motA-2 chemotaxis protein MotA DVU2229 106 COG1291 MotA, Flagellar motor component Cell motility and secretion 46579964 Common - AMP-binding protein DVU1553 108 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 46580595 Nonpathogen - transcriptional regulator, putative DVU2190 1 None None None 46581153 Common cobL precorrin-6Y C5,15-methyltransferase (decarboxylating) DVU2749 106 COG2242 CobL, Precorrin-6B methylase 2 Coenzyme metabolism 46578537 Common - ABC transporter, substrate-binding protein, putative DVU0120 73 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 46580196 Common - GGDEF domain protein DVU1786 164 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 46579740 Common rpoA DNA-directed RNA polymerase subunit alpha DVU1329 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 46580516 Common - transcriptional regulator, LysR family DVU2111 190 COG0583 LysR, Transcriptional regulator Transcription 46580771 Nonpathogen - hypothetical protein DVU2366 1 None None None 46578709 Common - prokaryotic dksA/traR C4-type zinc finger family protein DVU0293 21 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 46580490 Common - Snf2 family protein DVU2085 135 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 46578570 Common - hypothetical protein DVU0153 2 None None None 46580702 Common - glycine/betaine/L-proline ABC transporter, periplasmic-binding protein DVU2297 72 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 46581379 Common - hypothetical protein DVU2976 62 COG3272 COG3272, Uncharacterized conserved protein Function unknown 46580435 Common - hypothetical protein DVU2028 16 COG2378 COG2378, Predicted transcriptional regulator Transcription 46579450 Common - mercuric reductase, putative DVU1037 242 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 46579282 Common uppS undecaprenyl diphosphate synthase DVU0869 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 46580875 Nonpathogen - oxidoreductase, selenocysteine-containing DVU2471 46 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 46581309 Common - alcohol dehydrogenase, iron-containing DVU2905 105 COG1979 COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family Energy production and conversion 46581342 Common - hypothetical protein DVU2938 34 COG1900 COG1900, Uncharacterized conserved protein Function unknown 46580422 Common - metallo-beta-lactamase family protein DVU2014 82 COG0426 FpaA, Uncharacterized flavoproteins Energy production and conversion 46580440 Common - hypothetical protein DVU2033 4 None None None 46579045 Common - hypothetical protein DVU0631 19 None None None 46578702 Common hisF imidazoleglycerol phosphate synthase, cyclase subunit DVU0286 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 46579145 Common valS valyl-tRNA synthetase DVU0732 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 46580158 Nonpathogen - hypothetical protein DVU1748 3 None None None 46581372 Common - acetoacetyl-CoA synthase DVU2969 215 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 46581535 Common - glycerol uptake facilitator protein DVU3133 124 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 46579956 Common - hemolysin-type calcium-binding repeat/calx-beta domain protein DVU1545 82 None None None 46578657 Nonpathogen - hypothetical protein DVU0240 1 None None None 46580601 Nonpathogen - hypothetical protein DVU2196 1 None None None 46578630 Common - hypothetical protein DVU0213 12 COG3941 COG3941, Mu-like prophage protein General function prediction only 46581520 Nonpathogen - hypothetical protein DVU3117 1 None None None 46579084 Nonpathogen - exopolysaccharide production protein, putative DVU0670 1 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 46579607 Common leuS leucyl-tRNA synthetase DVU1196 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 46580649 Common glgA glycogen synthase DVU2244 169 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 46580629 Common - hypothetical protein DVU2224 3 None None None 46579912 Common - ClpP protease family protein DVU1501 42 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 46580192 Common - iron-sulfur cluster-binding protein DVU1782 94 COG1139 COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain Energy production and conversion 46579799 Common - hypothetical protein DVU1388 17 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 46580666 Common - hypothetical protein DVU2261 3 COG4641 COG4641, Uncharacterized protein conserved in bacteria Function unknown 46580865 Common - oligopeptide ABC transporter, permease protein DVU2461 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 46580390 Common - nucleotide-binding protein DVU1981 107 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 46578966 Common - high-affinity branched-chain amino acid ABC transporter ATP-binding protein DVU0551 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 46578971 Common - ISDvu3, transposase OrfA DVU0556 64 None None None 46579966 Nonpathogen - hypothetical protein DVU1555 7 None None None 46581382 Common - phosphatidylserine decarboxylase DVU2979 95 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism