Chlamydia muridarum Nigg, complete genome NC_002620 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 15834717 Pathogen - type III secretion system protein TC0092 2 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 15834635 Pathogen - hypothetical protein TC0010 3 None None None 15835402 Common ruvA Holliday junction DNA helicase motor protein TC0788 212 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 15835328 Pathogen - hypothetical protein TC0713 3 None None None 15834645 Pathogen - hypothetical protein TC0020 2 None None None 15834650 Common kdsA 2-dehydro-3-deoxyphosphooctonate aldolase TC0025 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 15835317 Common - hypothetical protein TC0702 72 COG2928 COG2928, Uncharacterized conserved protein Function unknown 15834882 Common pmpE/F-2 polymorphic membrane protein E/F family TC0262 6 None None None 15835353 Common - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative TC0738 137 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 15835365 Pathogen - hypothetical protein TC0751 2 None None None 15835127 Common fabD acyl-carrier-protein S-malonyltransferase TC0509 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 15834856 Pathogen - hypothetical protein TC0236 2 None None None 15835344 Pathogen - hypothetical protein TC0729 2 None None None 15835439 Pathogen - hypothetical protein TC0825 3 None None None 15834936 Pathogen hctB Hc2 nucleoprotein TC0316 2 None None None 15834747 Common hemE uroporphyrinogen decarboxylase TC0123 174 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 15835349 Pathogen - hypothetical protein TC0734 1 None None None 15835498 Common - thiol:disulfide interchange protein DsbD, putative TC0884 143 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 15834837 Common - hypothetical protein TC0217 30 COG2519 GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases Translation, ribosomal structure and biogenesis 15835042 Pathogen - hypothetical protein TC0424 2 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15834898 Common - lipid A biosynthesis lauroyl acyltransferase TC0278 39 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 15834825 Common - Mtr/TnaB/TyrO permease family protein TC0205 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 15835046 Common rpmG 50S ribosomal protein L33 TC0428 59 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 15834627 Common - Na(+)-translocating NADH-quinone reductase subunit A TC0002 40 COG1726 NqrA, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA Energy production and conversion 15834698 Pathogen - hypothetical protein TC0073 2 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 15834681 Common - cysteine desulfurase activator complex subunit SufB TC0056 184 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 15835381 Common - hypothetical protein TC0767 7 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 15834780 Pathogen - hypothetical protein TC0160 2 None None None 15835157 Common - N-acetylmuramoyl-L-alanine amidase, putative TC0539 184 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 15835425 Common rpsS 30S ribosomal protein S19 TC0811 245 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 15835450 Pathogen - hypothetical protein TC0836 3 None None None 15834769 Pathogen - hypothetical protein TC0149 3 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15835031 Common - serine esterase, putative TC0413 34 COG0400 COG0400, Predicted esterase General function prediction only 15834737 Common - cell division protein FtsK, putative TC0112 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 15835448 Pathogen - hypothetical protein TC0834 3 None None None 15835480 Pathogen - hypothetical protein TC0866 2 None None None 15835510 Pathogen - hypothetical protein TC0896 2 None None None 15834965 Common recF recombination protein F TC0346 167 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 15834760 Common - hypothetical protein TC0140 49 COG1388 LytE, FOG: LysM repeat Cell envelope biogenesis, outer membrane 15835117 Pathogen - hypothetical protein TC0499 1 None None None 15835487 Pathogen - hypothetical protein TC0873 2 None None None 15834730 Common ribH riboflavin synthase subunit beta TC0105 227 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 15835514 Common - coenzyme PQQ synthesis protein c, putative TC0900 44 COG5424 COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C Coenzyme metabolism 15835441 Common - spoU rRNA methylase family protein TC0827 169 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 15834887 Pathogen pmpG-2 polymorphic membrane protein G family TC0267 2 None None None 15835466 Common sctS type III secretion inner membrane protein SctS TC0852 66 COG4794 EscS, Type III secretory pathway, component EscS Intracellular trafficking and secretion 15834976 Common - phospholipase D family protein TC0357 50 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 15834864 Common fumC fumarate hydratase TC0244 233 COG0114 FumC, Fumarase Energy production and conversion 15835360 Common - hypothetical protein TC0746 77 COG1408 COG1408, Predicted phosphohydrolases General function prediction only 15835407 Common rplQ 50S ribosomal protein L17 TC0793 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 15835164 Common - type III secretion chaperone, putative TC0546 4 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 15835288 Common hrcA heat-inducible transcription repressor TC0673 151 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 15835276 Common - 3-deoxy-7-phosphoheptulonate synthase TC0661 81 COG2876 AroA, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 15835092 Common - peptide ABC transporter, ATP-binding protein TC0473.1 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15835173 Pathogen - hypothetical protein TC0556 3 None None None 15834949 Common - ferredoxin TC0329 12 COG0633 Fdx, Ferredoxin Energy production and conversion 15835198 Common atpB V-type ATP synthase subunit B TC0581 247 COG1156 NtpB, Archaeal/vacuolar-type H+-ATPase subunit B Energy production and conversion 15835263 Common aroB 3-dehydroquinate synthase TC0648 205 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 15835004 Pathogen - hypothetical protein TC0385 2 None None None 15835082 Pathogen - hypothetical protein TC0464 1 None None None 15834655 Common - hypothetical protein TC0030 34 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 15835312 Common - ABC transporter, ATP-binding protein TC0697 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 15834787 Common rnpA ribonuclease P TC0167 31 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 15835211 Common nusG transcription antitermination protein NusG TC0594 215 COG0250 NusG, Transcription antiterminator Transcription 15835471 Pathogen - hypothetical protein TC0857 2 None None None 15835133 Pathogen - hypothetical protein TC0515 2 None None None 15835534 Common - hypothetical protein TC0921 14 COG1351 THY1, Predicted alternative thymidylate synthase Nucleotide transport and metabolism 15835335 Common rpsJ 30S ribosomal protein S10 TC0720 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 15834914 Common ffh signal recognition particle TC0294 246 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 15835029 Pathogen - hypothetical protein TC0411 1 None None None 15835286 Pathogen - hypothetical protein TC0671 2 None None None 15834817 Common pmpD polymorphic membrane protein D family TC0197 5 None None None 15835123 Common - hypothetical protein TC0505 9 COG3202 COG3202, ATP/ADP translocase Energy production and conversion 15834685 Common - chromosome partioning protein, ParB family TC0060 185 COG1475 Spo0J, Predicted transcriptional regulators Transcription 15835013 Pathogen - hypothetical protein TC0394 1 None None None 15835061 Common - inosine-5`-monophosphate dehydrogenase, putative TC0443 233 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 15835230 Common ptsI phosphoenolpyruvate-protein phosphotransferase TC0613 221 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 15835000 Pathogen - hypothetical protein TC0381 2 None None None 15835022 Common - Nlp/P60 family protein TC0403 64 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 15834677 Pathogen ompA major outer membrane protein, porin TC0052 2 None None None 15835140 Common - putative inner membrane protein translocase component YidC TC0522 211 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 15835391 Pathogen - hypothetical protein TC0777 1 None None None 15835415 Common rplF 50S ribosomal protein L6 TC0801 232 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 15834763 Common murC/ddlA UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase TC0143 216 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 15834771 Common fabF 3-oxoacyl-(acyl carrier protein) synthase II TC0151 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15835410 Common rpsM 30S ribosomal protein S13 TC0796 241 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 15834878 Pathogen - hypothetical protein TC0258 2 None None None 15835091 Common - peptide ABC transporter, permease protein TC0473 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15835270 Common mdh malate dehydrogenase TC0655 64 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 15834790 Common rpsN 30S ribosomal protein S14 TC0170 212 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 15834866 Pathogen - hypothetical protein TC0246 1 None None None 15834722 Pathogen - hypothetical protein TC0097 3 None None None 15834669 Common - serine/threonine-protein kinase TC0044 149 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 15835080 Common gyrB DNA gyrase subunit B TC0462 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 15834924 Pathogen - hypothetical protein TC0304 1 None None None 15835076 Common - 6-phosphogluconolactonase TC0458 106 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 15835168 Common - Na(+)-translocating NADH-quinone reductase subunit B TC0550 74 COG1805 NqrB, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB Energy production and conversion 15834845 Pathogen - hypothetical protein TC0225 2 None None None 15835103 Common rpiA ribose-5-phosphate isomerase A TC0485 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 15835351 Common - phosphatidate cytidylyltransferase, putative TC0736 83 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 15834661 Pathogen - hypothetical protein TC0036 3 None None None 15834695 Common trmE tRNA modification GTPase TrmE TC0070 224 COG0486 ThdF, Predicted GTPase General function prediction only 15835052 Common - phospholipase D family protein TC0434 34 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 15834757 Common - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase MurF, putative TC0137 207 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 15835496 Common - succinate dehydrogenase, cytochrome b558 subunit, putative TC0882 11 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 15834683 Common - hypothetical protein TC0058 153 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 15834749 Common alaS alanyl-tRNA synthetase TC0125 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15835458 Pathogen - hypothetical protein TC0844 2 None None None 15835512 Common pcrA ATP-dependent helicase PcrA TC0898 230 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 15834711 Pathogen - major outer membrane protein, putative TC0086 2 None None None 15835433 Common fabZ (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase TC0819 186 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 15834901 Common cydA cytochrome D ubiquinol oxidase, subunit I TC0281 165 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 15835528 Common rpsD 30S ribosomal protein S4 TC0915 221 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 15834805 Common rpsR 30S ribosomal protein S18 TC0185 215 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 161579047 Common rnhB-1 ribonuclease HIII TC0276 33 COG1039 RnhC, Ribonuclease HIII DNA replication, recombination, and repair 15834854 Pathogen - hypothetical protein TC0234 2 None None None 15834759 Common murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TC0139 207 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 15835024 Common - amino acid ABC transporter, permease protein TC0405 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 15835310 Common pmpB/C-2 polymorphic membrane protein B/C family TC0695 13 None None None 15835308 Common pmpA polymorphic membrane protein A family TC0693 8 None None None 15834638 Common - NifR3/Smm1 family protein TC0013 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 15835166 Common - hypothetical protein TC0548 47 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 15834751 Common tkt transketolase TC0131 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 15834679 Common - penicillin-binding protein, putative TC0054 167 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 15835129 Common recR recombination protein RecR TC0511 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 15835383 Pathogen - hypothetical protein TC0769 2 None None None 15834719 Common - nifS protein, putative TC0094 98 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 15834740 Pathogen - hypothetical protein TC0115 1 None None None 15835342 Common omcB 60 kDa outer membrane protein TC0727 14 None None None 15834981 Common malQ 4-alpha-glucanotransferase TC0362 120 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 15834647 Pathogen - hypothetical protein TC0022 3 None None None 15835223 Pathogen xseB exodeoxyribonuclease VII small subunit TC0606 2 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 15834835 Common nrdB ribonucleotide-diphosphate reductase subunit beta TC0215 161 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 15834952 Common tyrS tyrosyl-tRNA synthetase TC0332 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15835096 Common - hypothetical protein TC0478 8 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 15835162 Common mraW S-adenosyl-methyltransferase MraW TC0544 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 15834859 Pathogen - hypothetical protein TC0239 2 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15834889 Pathogen - hypothetical protein TC0269 2 COG2155 COG2155, Uncharacterized conserved protein Function unknown 15835400 Common - lipoate-protein ligase-related protein TC0786 49 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 15835155 Pathogen - hypothetical protein TC0537 3 None None None 15835176 Common clpC ATP-dependent Clp protease, ATP-binding subunit ClpC TC0559 225 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 15834767 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase TC0147 213 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 15835112 Common - hypothetical protein TC0494 47 COG1284 COG1284, Uncharacterized conserved protein Function unknown 15835266 Pathogen - hypothetical protein TC0651 2 COG3659 OprB, Carbohydrate-selective porin Cell envelope biogenesis, outer membrane 15834776 Common - hypothetical protein TC0156 24 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 15835481 Pathogen - hypothetical protein TC0867 2 None None None 15835459 Pathogen - hypothetical protein TC0845 1 None None None 15834959 Common - ABC transporter, ATP-binding protein TC0339 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 15834934 Common ssb single-strand DNA-binding protein TC0314 14 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 15835251 Pathogen - hypothetical protein TC0636 1 None None None 15835245 Pathogen - hypothetical protein TC0630 3 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 15835532 Common - transcriptional regulator TC0919 169 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 15835115 Pathogen - hypothetical protein TC0497 1 None None None 15834783 Common lysS lysyl-tRNA synthetase TC0163 235 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 15835509 Common - putative deoxyribonucleotide triphosphate pyrophosphatase TC0895 232 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 15835492 Pathogen - hypothetical protein TC0878 2 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 15835229 Common - hypothetical protein TC0612 36 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 15835149 Pathogen - hypothetical protein TC0531 3 COG5465 COG5465, Uncharacterized conserved protein Function unknown 15834912 Common prfA peptide chain release factor 1 TC0292 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 15834991 Common nusA transcription elongation factor NusA TC0372 216 COG0195 NusA, Transcription elongation factor Transcription 15835236 Common - hypothetical protein TC0621 10 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 15835002 Common mutY A/G-specific adenine glycosylase TC0383 237 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 15835337 Common rpsG 30S ribosomal protein S7 TC0722 243 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 15835191 Pathogen - hypothetical protein TC0574 1 None None None 15835105 Common fbaB fructose-bisphosphate aldolase TC0487 65 COG1830 FbaB, DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes Carbohydrate transport and metabolism 15834687 Common - peptide ABC transporter, ATP-binding protein TC0062 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15835184 Common sod superoxide dismutase TC0567 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 15835178 Pathogen - hypothetical protein TC0561 2 None None None 15834940 Pathogen - hypothetical protein TC0320 2 None None None 15835011 Pathogen - hypothetical protein TC0392 1 None None None 15835417 Common rplE 50S ribosomal protein L5 TC0803 243 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 15835393 Common coaE dephospho-CoA kinase TC0779 203 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 15835356 Pathogen - hypothetical protein TC0741 2 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 15835153 Common - ABC transporter, ATP-binding protein TC0535 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 15834789 Pathogen rpmJ 50S ribosomal protein L36 TC0169 3 None None None 15834884 Common pmpH polymorphic membrane protein H family TC0264 32 None None None 15835195 Common atpK V-type ATP synthase subunit K TC0578 17 None None None 15835494 Common sdhB succinate dehydrogenase iron-sulfur subunit TC0880 208 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 15835027 Common - hypothetical protein TC0409 12 COG1295 Rbn, Predicted membrane protein Function unknown 15835314 Common obgE GTPase ObgE TC0699 249 COG0536 Obg, Predicted GTPase General function prediction only 15835473 Common gspF general secretion pathway protein F TC0859 142 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 15834724 Common - cell shape-determining protein MrdB, putative TC0099 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 15834895 Pathogen - hypothetical protein TC0275 3 None None None 15834843 Common rplT 50S ribosomal protein L20 TC0223 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 15835294 Common - carbohydrate isomerase, KpsF/GutQ family TC0679 148 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 15834692 Pathogen - hypothetical protein TC0067 2 None None None 161579046 Common rpsA 30S ribosomal protein S1 TC0373 215 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 15835272 Common pgi glucose-6-phosphate isomerase TC0657 210 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 15834947 Common gcpE 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TC0327 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 15835125 Common acpP acyl carrier protein TC0507 209 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15835131 Common - cationic outer membrane protein OmpH, putative TC0513 5 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 15834967 Common smpB SsrA-binding protein TC0348 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 15835059 Common - hypothetical protein TC0441 69 COG1816 Add, Adenosine deaminase Nucleotide transport and metabolism 15835279 Common - HIT family protein TC0664 182 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 15834708 Common pckA phosphoenolpyruvate carboxykinase TC0083 59 COG1274 PckA, Phosphoenolpyruvate carboxykinase (GTP) Energy production and conversion 15835209 Common rplA 50S ribosomal protein L1 TC0592 236 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 15835078 Common tdk thymidylate kinase TC0460 225 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 15834663 Pathogen - hypothetical protein TC0038 3 None None None 15835261 Common aroK shikimate kinase TC0646 61 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 15834702 Common - poly(A) polymerase family protein TC0077 213 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 15834960 Common - ABC transporter, permease protein, putative TC0341 151 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 15834701 Common engA GTP-binding protein EngA TC0076 223 COG1160 COG1160, Predicted GTPases General function prediction only 15834871 Pathogen - hypothetical protein TC0251 2 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15835442 Common mip peptidyl-prolyl cis-trans isomerase Mip TC0828 130 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 15835171 Common - Na(+)-translocating NADH-quinone reductase subunit E TC0553 76 COG2209 NqrE, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE Energy production and conversion 15834795 Common dnaG DNA primase TC0175 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 15835435 Common lnt apolipoprotein N-acyltransferase TC0821 144 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 15835375 Common - hypothetical protein TC0761 5 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 15835527 Common nfo endonuclease IV TC0914 97 COG0648 Nfo, Endonuclease IV DNA replication, recombination, and repair 15834815 Common rpmF 50S ribosomal protein L32 TC0195 57 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 15835411 Common secY preprotein translocase subunit SecY TC0797 241 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 15835259 Pathogen - hypothetical protein TC0644 2 None None None 15834670 Common sctC type III secretion protein SctC TC0045 124 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 15834926 Pathogen - hypothetical protein TC0306 2 None None None 15834803 Common pth peptidyl-tRNA hydrolase TC0183 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 15835218 Pathogen - hypothetical protein TC0601 1 None None None 15834832 Common - hypothetical protein TC0212 143 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 15835240 Common - ribonuclease Z TC0625 97 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 15835017 Common efp-2 elongation factor P TC0398 201 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 15835385 Pathogen - hypothetical protein TC0771 3 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 15835453 Common - D-alanyl-D-alanine carboxypeptidase, putative TC0839 146 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 15835518 Common - DhnA family protein TC0904 6 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 15835445 Common - GlpT/PgpT/UhpT family protein TC0831 112 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 15834933 Pathogen - hypothetical protein TC0313 3 None None None 15835098 Common kdtA 3-deoxy-D-manno-octulosonic-acid transferase TC0480 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 15835038 Pathogen - hypothetical protein TC0420 2 None None None 15834742 Common yajC preprotein translocase subunit YajC TC0117 41 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 15835247 Common def peptide deformylase TC0632 214 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 15834764 Common - hypothetical protein TC0144 46 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 15834672 Common - hypothetical protein TC0047 7 COG3880 COG3880, Uncharacterized protein with conserved CXXC pairs Function unknown 15834918 Common rnhB ribonuclease HII TC0298 227 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 15835265 Pathogen - hypothetical protein TC0650 2 None None None 15835235 Common rpsU 30S ribosomal protein S21 TC0620 5 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 15835208 Common rplJ 50S ribosomal protein L10 TC0591 131 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 15834883 Pathogen pmpG-1 polymorphic membrane protein G family TC0263 2 None None None 15834857 Pathogen - hypothetical protein TC0237 2 None None None 15835107 Common - hypothetical protein TC0489 114 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 15835524 Pathogen - hypothetical protein TC0910 2 None None None 15835502 Common tolB translocation protein TolB TC0888 136 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 15834659 Pathogen - hypothetical protein TC0034 2 None None None 15835296 Common - sodium:dicarboxylate symporter family protein TC0681 161 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 15835175 Common - hypothetical protein TC0558 19 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 15835321 Common - hemolysin, putative TC0706 217 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 15834772 Common - mutT/Nudix family protein TC0152 26 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 15834733 Common - sodium/alanine symporter family protein TC0108 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 15835285 Common - hypothetical protein TC0670 17 COG2984 COG2984, ABC-type uncharacterized transport system, periplasmic component General function prediction only 15835405 Pathogen - hypothetical protein TC0791 3 None None None 15834990 Common infB translation initiation factor IF-2 TC0371 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 15835110 Common ubiA prenyltransferase TC0492 89 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 15834822 Common - phosphoglucomutase/phosphomannomutase family protein TC0202 241 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 15834894 Pathogen - hypothetical protein TC0274 2 None None None 15835071 Pathogen - hypothetical protein TC0453 3 None None None 15834628 Pathogen - hypothetical protein TC0003 2 None None None 15835019 Common accC acetyl-CoA carboxylase biotin carboxylase subunit TC0400 226 COG0439 AccC, Biotin carboxylase Lipid metabolism 15834829 Common sucD succinyl-CoA synthetase subunit alpha TC0209 213 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 15835313 Common - ABC transporter, permease protein TC0698 184 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 15835203 Pathogen - hypothetical protein TC0586 2 None None None 15834868 Common - hypothetical protein TC0248 8 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 15834806 Common rplI 50S ribosomal protein L9 TC0186 212 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 15835319 Pathogen - hypothetical protein TC0704 3 None None None 15834639 Common - hypothetical protein TC0014 26 COG0762 COG0762, Predicted integral membrane protein Function unknown 15835248 Common ksgA dimethyladenosine transferase TC0633 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 15834713 Common - UDP-N-acetylglucosamine pyrophosphorylase, putative TC0088 7 COG4284 COG4284, UDP-glucose pyrophosphorylase Carbohydrate transport and metabolism 15835348 Common - bifunctional preprotein translocase subunit SecD/SecF TC0733 212 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 15835028 Common - hypothetical protein TC0410 14 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 15834812 Pathogen - glycerol-3-phosphate acyltransferase, putative TC0192 3 None None None 15834630 Common - aromatic amino acid aminotransferase TC0005 73 COG1448 TyrB, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 15834986 Common - translation-associated GTPase TC0367 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 15834958 Common - ABC transporter, periplasmic substrate-binding protein, putative TC0338 136 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 15835221 Common tpiA triosephosphate isomerase TC0604 219 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 15834973 Pathogen - hypothetical protein TC0354 1 None None None 15834852 Common - cytidine/deoxycytidylate deaminase family protein TC0232 210 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 15834968 Common - thiamine biosynthesis lipoprotein, putative TC0349 126 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 15835491 Common - regulatory protein, putative TC0877 88 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 15835258 Common dapB dihydrodipicolinate reductase TC0643 216 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 15835281 Common - hypothetical protein TC0666 50 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 15835056 Common - adherence factor TC0438 5 COG1579 COG1579, Zn-ribbon protein, possibly nucleic acid-binding General function prediction only 15834741 Common - Na(+)-translocating NADH-quinone reductase subunit F TC0116 127 COG2871 NqrF, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF Energy production and conversion 15835526 Common - hypothetical protein TC0913 146 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 15835257 Common asd aspartate-semialdehyde dehydrogenase TC0642 208 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 15835484 Common thrS threonyl-tRNA synthetase TC0870 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15834797 Pathogen - hypothetical protein TC0177 2 None None None 15834665 Common sctN type III secretion system ATPase TC0040 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 15834848 Common - MesJ/Ycf62 family protein TC0228 212 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 15835420 Common rpsQ 30S ribosomal protein S17 TC0806 240 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 15835429 Common rplC 50S ribosomal protein L3 TC0815 224 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 15834778 Common - 8-amino-7-oxononanoate synthase TC0158 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 15834841 Common infC translation initiation factor IF-3 TC0221 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 15835413 Common rpsE 30S ribosomal protein S5 TC0799 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 15834688 Common - hypothetical protein TC0063 38 COG1392 COG1392, Phosphate transport regulator (distant homolog of PhoU) Inorganic ion transport and metabolism 15835034 Common - peptide ABC transporter, periplasmic peptide-binding protein, putative TC0416 150 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15834927 Pathogen - hypothetical protein TC0307 1 None None None 15835068 Common - hypothetical protein TC0450 10 None None None 15835253 Common - BioY family protein TC0638 91 COG1268 BioY, Uncharacterized conserved protein General function prediction only 15834690 Common pgk phosphoglycerate kinase TC0065 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 15835094 Common - sodium:sulfate symporter family protein TC0476 103 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 15835462 Common sctJ type III secretion protein SctJ TC0848 52 COG4669 EscJ, Type III secretory pathway, lipoprotein EscJ Intracellular trafficking and secretion 15835436 Common - cytosolic acyl-CoA thioester hydrolase family protein TC0822 135 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 15834804 Common rpsF 30S ribosomal protein S6 TC0184 107 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 15834704 Common clpP ATP-dependent Clp protease proteolytic subunit TC0079 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 15834945 Common sucB dihydrolipoamide acetyltransferase TC0325 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 15834873 Pathogen - hypothetical protein TC0253 2 None None None 15835053 Pathogen - phospholipase D family protein TC0435 3 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 15835358 Common - acetyltransferase, GNAT family TC0743 12 COG0456 RimI, Acetyltransferases General function prediction only 15835275 Common - amino acid ABC transporter, periplasmic amino acid-binding protein TC0660 169 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 15835377 Common - peptide ABC transporter, permease protein, putative TC0763 219 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15834727 Common serS seryl-tRNA synthetase TC0102 245 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 15835323 Common - hypothetical protein TC0708 9 None None None 15834900 Common - hypothetical protein TC0280 67 COG1624 COG1624, Uncharacterized conserved protein Function unknown 15835177 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TC0560 213 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 15835372 Common - hypothetical protein TC0758 180 COG0759 COG0759, Uncharacterized conserved protein Function unknown 15835306 Common - poly(A) polymerase family protein TC0691 213 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 15834753 Common efp-1 elongation factor P TC0133 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 15835197 Pathogen atpD V-type ATP synthase subunit D TC0580 8 COG1394 NtpD, Archaeal/vacuolar-type H+-ATPase subunit D Energy production and conversion 15835100 Common hemL glutamate-1-semialdehyde aminotransferase TC0482 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 15834782 Pathogen - hypothetical protein TC0162 1 None None None 15834891 Common gatA aspartyl/glutamyl-tRNA amidotransferase subunit A TC0271 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 15835187 Common rnc ribonuclease III TC0570 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 15834993 Pathogen - hypothetical protein TC0374 1 None None None 15834885 Pathogen - hypothetical protein TC0265 1 None None None 15834905 Common - hypothetical protein TC0285 6 COG3103 COG3103, SH3 domain protein Signal transduction mechanisms 15835206 Common rpoB DNA-directed RNA polymerase subunit beta TC0589 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 15835315 Common rpmA 50S ribosomal protein L27 TC0700 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 15835137 Common glgP glycogen phosphorylase TC0519 137 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 15835049 Pathogen - MAC/perforin family protein TC0431 2 None None None 15835147 Common - nifS protein, putative TC0529 231 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 15834774 Common - Glu/Leu/Phe/Val dehydrogenase family protein TC0154 111 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 161579048 Common map methionine aminopeptidase TC0240 239 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 15835193 Common valS valyl-tRNA synthetase TC0576 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15835395 Common - protease IV, putative TC0781 189 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 15835007 Common pepF oligoendopeptidase F TC0388 88 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 15835089 Common - peptide ABC transporter, periplasmic peptide-binding protein, putative TC0471 168 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 15835159 Pathogen - hypothetical protein TC0541 1 None None None 15835267 Common - hypothetical protein TC0652 4 COG1945 COG1945, Uncharacterized conserved protein Function unknown 15835403 Common ruvC Holliday junction resolvase TC0789 197 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 15834956 Pathogen - hypothetical protein TC0336 3 None None None 15835504 Common - hypothetical protein TC0890 4 COG1388 LytE, FOG: LysM repeat Cell envelope biogenesis, outer membrane 15834997 Pathogen - hypothetical protein TC0378 2 COG3190 FliO, Flagellar biogenesis protein Cell motility and secretion 15835135 Common pdhB pyruvate dehydrogenase, E1 component, beta subunit TC0517 197 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 15834963 Common - hypothetical protein TC0344 209 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 15834839 Common nusB transcription antitermination protein NusB TC0219 16 COG0781 NusB, Transcription termination factor Transcription 15834978 Common - hypothetical protein TC0359 152 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 15835036 Common - hypothetical protein TC0418 27 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 15834938 Common - hypothetical protein TC0318 207 COG0313 COG0313, Predicted methyltransferases General function prediction only 15834903 Common - PhoH-related protein TC0283 199 COG1875 COG1875, Predicted ATPase related to phosphate starvation-inducible protein PhoH Signal transduction mechanisms 15835500 Common - ExbD/TolR family protein TC0886 37 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 15835122 Pathogen - hypothetical protein TC0504 1 None None None 15835309 Common pmpB/C-1 polymorphic membrane protein B/C family TC0694 19 None None None 15835531 Common - UDP-N-acetylglucosamine pyrophosphorylase GlmU-related enzyme TC0918 213 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 15835468 Pathogen - hypothetical protein TC0854 2 None None None 15834827 Common ftsY signal recognition particle protein FtsY TC0207 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 15835331 Common glyA serine hydroxymethyltransferase TC0716 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 15834830 Common htrA serine protease, HtrA/DegQ/DegS family TC0210 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 15834642 Common - hypothetical protein TC0017 16 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 15834674 Common pyrH uridylate kinase TC0049 235 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 15835090 Common - peptide ABC transporter, permease protein TC0472 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15835242 Common - ABC transporter, ATP-binding protein TC0627 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 15835214 Common infA translation initiation factor IF-1 TC0597 213 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 15835387 Common - amino acid ABC transporter, periplasmic amino acid-binding protein TC0773 61 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 15834931 Common - hypothetical protein TC0311 5 None None None 15834861 Common - hypothetical protein TC0241 133 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 15834652 Pathogen - hypothetical protein TC0027 2 None None None 15835118 Pathogen - hypothetical protein TC0500 1 None None None 15835455 Common - Nol1/Nop2/Sun family protein TC0841 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 15835380 Pathogen - hypothetical protein TC0766 1 None None None 15835523 Pathogen - hypothetical protein TC0909 2 None None None 161579044 Common tuf elongation factor Tu TC0596 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 15834684 Common - aminotransferase, class V TC0059 240 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 15835379 Common - peptide ABC transporter, periplasmic peptide-binding protein, putative TC0765 160 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15835287 Common proS prolyl-tRNA synthetase TC0672 232 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15835516 Common folA dihydrofolate reductase TC0902 136 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 15835227 Common uvrA excinuclease ABC subunit A TC0610 242 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 15834762 Common murG N-acetylglucosaminyl transferase TC0142 207 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 15835066 Common - putative disulfide oxidoreductase TC0448 21 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 15834801 Common glgA glycogen synthase TC0181 133 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 15835077 Common - DNA polymerase III subunit delta' TC0459 79 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 15834984 Common sctV type III secretion inner membrane protein SctV TC0365 127 COG4789 EscV, Type III secretory pathway, component EscV Intracellular trafficking and secretion 15835020 Common rplM 50S ribosomal protein L13 TC0401 230 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 15835161 Pathogen - hypothetical protein TC0543 3 None None None 15835469 Pathogen - hypothetical protein TC0855 2 None None None 15835446 Common dnaE DNA polymerase III subunit alpha TC0832 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 15835044 Common - hypothetical protein TC0426 17 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 15834850 Common pnpA polynucleotide phosphorylase/polyadenylase TC0230 241 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 15834910 Pathogen - hypothetical protein TC0290 3 None None None 15834846 Pathogen - hypothetical protein TC0226 3 COG0795 COG0795, Predicted permeases General function prediction only 15835304 Pathogen - hypothetical protein TC0689 1 None None None 15834819 Pathogen - hypothetical protein TC0199 1 None None None 15835352 Common cmk cytidylate kinase TC0737 208 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 15835201 Common - V-type ATP synthase subunit E TC0584 8 COG1390 NtpE, Archaeal/vacuolar-type H+-ATPase subunit E Energy production and conversion 15834637 Common topA DNA topoisomerase I/SWI domain fusion protein TC0012 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 15834820 Pathogen - hypothetical protein TC0200 2 None None None 15834808 Pathogen - hypothetical protein TC0188 1 None None None 15834744 Pathogen - hypothetical protein TC0120 2 None None None 15834715 Common - type III secretion system ATPase TC0090 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 15834880 Pathogen - hypothetical protein TC0260 2 None None None 15835369 Pathogen recO DNA repair protein RecO TC0755 3 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 15834657 Common gyrB-1 DNA topoisomerase IV subunit B TC0032 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 15834971 Pathogen - hypothetical protein TC0352 1 None None None 15835040 Common - hypothetical protein TC0422 128 COG1262 COG1262, Uncharacterized conserved protein Function unknown 15835364 Pathogen - hypothetical protein TC0750 2 None None None 15835346 Pathogen euo euo protein TC0731 3 None None None 15835277 Pathogen - hypothetical protein TC0662 2 None None None 15834943 Pathogen - hypothetical protein TC0323 3 None None None 15834696 Pathogen - hypothetical protein TC0071 1 None None None 15835370 Pathogen - hypothetical protein TC0756 2 None None None 15834729 Common ribA/B bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein TC0104 232 COG0807 RibA, GTP cyclohydrolase II Coenzyme metabolism 15834810 Common - metalloprotease, insulinase family TC0190 183 COG1025 Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like Posttranslational modification, protein turnover, chaperones 15834755 Common - icc-related protein TC0135 37 COG1409 Icc, Predicted phosphohydrolases General function prediction only 15834799 Pathogen - hypothetical protein TC0179 1 None None None 15835283 Common - hypothetical protein TC0668 6 None None None 15834667 Pathogen - hypothetical protein TC0042 2 None None None 15835423 Common rpsC 30S ribosomal protein S3 TC0809 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 15834791 Pathogen - hypothetical protein TC0171 3 None None None 15835255 Common dapA dihydrodipicolinate synthase TC0640 232 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 15834954 Common lepA GTP-binding protein LepA TC0334 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 15835431 Common fmt methionyl-tRNA formyltransferase TC0817 215 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 15835239 Pathogen - hypothetical protein TC0624 1 None None None 15835290 Common dnaK molecular chaperone DnaK TC0675 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 15834929 Common dcd deoxycytidine triphosphate deaminase TC0309 148 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 15834922 Common recD exodeoxyribonuclease V, alpha subunit TC0302 144 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 15834855 Pathogen - hypothetical protein TC0235 2 None None None 15835099 Common leuS leucyl-tRNA synthetase TC0481 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15835476 Pathogen - hypothetical protein TC0862 3 None None None 15835032 Common - hypothetical protein TC0414 239 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 15835485 Common - ParA family protein TC0871 229 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 15835180 Common - PTS system, IIA component TC0563 106 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 15835087 Pathogen - hypothetical protein TC0469 1 None None None 15835145 Common - hypothetical protein TC0527 216 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 15835333 Common ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TC0718 186 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 15835416 Common rpsH 30S ribosomal protein S8 TC0802 222 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 15835064 Common - peptide ABC transporter, periplasmic peptide-binding protein TC0446 157 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 15835073 Common pyrG CTP synthetase TC0455 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 15835382 Pathogen - hypothetical protein TC0768 1 None None None 15835058 Common - phospholipase D family protein TC0440 21 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 15835438 Common - hypothetical protein TC0824 179 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 15835009 Pathogen - hypothetical protein TC0390 3 COG2912 COG2912, Uncharacterized conserved protein Function unknown 15835232 Pathogen - hypothetical protein TC0617 8 COG0658 ComEC, Predicted membrane metal-binding protein General function prediction only 15835506 Common - antioxidant, AhpC/Tsa family TC0892 229 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 15835325 Common - hypothetical protein TC0710 81 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 15835374 Common pheT phenylalanyl-tRNA synthetase subunit beta TC0760 233 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 15834640 Pathogen - hypothetical protein TC0015 2 None None None 15835015 Common incA inclusion membrane localised protein IncA TC0396 7 COG1579 COG1579, Zn-ribbon protein, possibly nucleic acid-binding General function prediction only 15834784 Common cysS cysteinyl-tRNA synthetase TC0164 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15834916 Common trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein TC0296 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 15835300 Common ribE riboflavin synthase subunit alpha TC0685 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 15835109 Common surE stationary phase survival protein SurE TC0491 186 COG0496 SurE, Predicted acid phosphatase General function prediction only 15835189 Common - porphobilinogen deaminase TC0572 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 15835401 Common ndk nucleoside diphosphate kinase TC0787 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 15835120 Common - sodium-dependent transporter, putative TC0502 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 15835199 Common atpA V-type ATP synthase subunit A TC0582 247 COG1155 NtpA, Archaeal/vacuolar-type H+-ATPase subunit A Energy production and conversion 15835010 Pathogen - hypothetical protein TC0391 1 None None None 15835204 Common tal transaldolase B TC0587 188 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 15835299 Common - hypothetical protein TC0684 117 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 15834995 Common acpS 4'-phosphopantetheinyl transferase TC0376 158 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 15834816 Common plsX fatty acid/phospholipid synthesis protein TC0196 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 15835219 Common - helicase, putative TC0602 47 COG4889 COG4889, Predicted helicase General function prediction only 15834777 Common - long chain fatty acid--[acyl-carrier-protein] ligase TC0157 214 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15834786 Common - hypothetical protein TC0166 4 COG2143 COG2143, Thioredoxin-related protein Posttranslational modification, protein turnover, chaperones 15835472 Common - hypothetical protein TC0858 4 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 15835141 Common - prolipoprotein diacylglyceryl transferase TC0523 193 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 15835132 Common lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TC0514 159 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 15835422 Common rplP 50S ribosomal protein L16 TC0808 217 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 15835102 Common - hypothetical protein TC0484 67 COG1259 COG1259, Uncharacterized conserved protein Function unknown 15835003 Common - hypothetical protein TC0384 96 COG0327 COG0327, Uncharacterized conserved protein Function unknown 15835170 Common - Na(+)-translocating NADH-quinone reductase subunit D TC0552 76 COG1347 NqrD, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD Energy production and conversion 15835392 Common rho transcription termination factor Rho TC0778 208 COG1158 Rho, Transcription termination factor Transcription 15835143 Common - hypothetical protein TC0525 20 None None None 15835085 Pathogen - hypothetical protein TC0467 1 None None None 15835060 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein TC0442 238 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 15835418 Common rplX 50S ribosomal protein L24 TC0804 169 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 15835079 Common gyrA-2 DNA gyrase subunit A TC0461 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 15835014 Pathogen - hypothetical protein TC0395 1 None None None 15835231 Common ptsH phosphocarrier protein HPr TC0614 101 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 15835179 Pathogen - hypothetical protein TC0562 2 None None None 15835021 Common rpsI 30S ribosomal protein S9 TC0402 245 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 15835397 Common - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase protein, putative TC0783 64 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 15835124 Common - cyclic nucleotide-binding protein, putative TC0506 41 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 15834676 Common rpsB 30S ribosomal protein S2 TC0051 224 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 15835486 Pathogen - virulence protein pGP6-D-related protein TC0872 3 None None None 15835185 Common - phosphoglucomutase/phosphomannomutase, putative TC0568 233 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 15834844 Common pheS phenylalanyl-tRNA synthetase subunit alpha TC0224 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 15835495 Common sdhA succinate dehydrogenase flavoprotein subunit TC0881 224 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 15835238 Common - protease, Lon family TC0623 205 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 15835336 Common fusA elongation factor G TC0721 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 15834913 Common - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase TC0293 221 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 15835148 Common - serine/threonine protein phosphatase, putative TC0530 137 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 15834838 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase TC0218 207 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 15834925 Common - biotin apo-protein ligase-related protein TC0305 6 COG4285 COG4285, Uncharacterized conserved protein Function unknown 15835341 Pathogen srp Srp TC0726 2 None None None 15835030 Pathogen - hypothetical protein TC0412 2 None None None 15834646 Common - exodeoxyribonuclease V, alpha subunit, putative TC0021 121 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 15834792 Common - hypothetical protein TC0172 10 COG1302 COG1302, Uncharacterized protein conserved in bacteria Function unknown 15835057 Common - adherence factor TC0439 5 None None None 15834680 Common - type III secretion chaperone, putative TC0055 141 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 15835260 Common aroA 3-phosphoshikimate 1-carboxyvinyltransferase TC0645 228 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 15834693 Pathogen - hypothetical protein TC0068 2 None None None 15835412 Common rplO 50S ribosomal protein L15 TC0798 215 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 15834746 Common hemN coproporphyrinogen III oxidase TC0122 203 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 15835225 Common dxs 1-deoxy-D-xylulose-5-phosphate synthase TC0608 218 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 15834694 Common nth endonuclease III TC0069 237 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 15834707 Common mreB cell shape-determining protein MreB TC0082 234 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 15835376 Common - DNA methyltransferase TC0762 12 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 15834875 Common xerD site-specific tyrosine recombinase XerD TC0255 228 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 15835126 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase TC0508 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15834870 Pathogen - hypothetical protein TC0250 2 None None None 15834853 Pathogen - hypothetical protein TC0233 3 None None None 15834700 Pathogen - hypothetical protein TC0075 2 None None None 15835295 Common - branched-chain alpha-keto acid dehydrogenase subunit E2 TC0680 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 15834948 Pathogen - hypothetical protein TC0328 2 None None None 15835432 Common lpxA UDP-N-acetylglucosamine acyltransferase TC0818 167 COG1043 LpxA, Acyl- acyl carrier protein 15835210 Common rplK 50S ribosomal protein L11 TC0593 244 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 15835302 Common - hypothetical protein TC0687 144 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 15835271 Pathogen - hypothetical protein TC0656 2 None None None 15835354 Common argS arginyl-tRNA synthetase TC0739 248 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15834660 Common - hypothetical protein TC0035 14 COG4547 CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) Coenzyme metabolism 15835520 Common - hypothetical protein TC0906 7 COG4700 COG4700, Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats Function unknown 161579045 Common dut deoxyuridine 5'-triphosphate nucleotidohydrolase TC0565 179 COG0756 Dut, dUTPase Nucleotide transport and metabolism 15834686 Common - peptide ABC transporter, ATP-binding protein TC0061 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 15834720 Common gpmA phosphoglyceromutase TC0095 164 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 15834941 Pathogen - hypothetical protein TC0321 2 None None None 15834678 Pathogen - hypothetical protein TC0053 1 None None None 15834826 Common - hypothetical protein TC0206 95 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 15835041 Common ligA NAD-dependent DNA ligase LigA TC0423 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 15835363 Common - hydrolase, haloacid dehalogenase-like family TC0749 18 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 15835366 Common - sensor histidine kinase TC0752 216 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 15835384 Pathogen - hypothetical protein TC0770 2 None None None 15834982 Pathogen sycE type III secretion chaperone SycE TC0363 3 None None None 15834970 Pathogen - hypothetical protein TC0351 3 None None None 15834756 Common - 60 kDa chaperonin, putative TC0136 217 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 15834644 Common recA recombinase A TC0019 216 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 15835327 Common ubiE ubiquinone/menaquinone biosynthesis methyltransferase TC0712 201 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 15834634 Common - hypothetical protein TC0009 123 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15834881 Common pmpE/F-1 polymorphic membrane protein E/F family TC0261 5 COG4625 COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain Function unknown 15834909 Common - signal peptidase, putative TC0289 101 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 15835522 Pathogen - hypothetical protein TC0908 2 None None None 15835023 Common adk adenylate kinase TC0404 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 15834863 Common - ABC transporter, permease protein, putative TC0243 163 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 15835244 Common - hypothetical protein TC0629 6 COG1413 COG1413, FOG: HEAT repeat Energy production and conversion 15834897 Common - hypothetical protein TC0277 17 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 15835045 Pathogen - hypothetical protein TC0427 1 None None None 15835529 Common - hypothetical protein TC0916 112 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 15835467 Common sctT type III secretion inner membrane protein SctT TC0853 109 COG4791 EscT, Type III secretory pathway, component EscT Intracellular trafficking and secretion 15835343 Pathogen omcA OmcA TC0728 2 None None None 15835081 Pathogen - hypothetical protein TC0463 3 None None None 15834989 Common rbfA ribosome-binding factor A TC0370 124 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 15834716 Pathogen - hypothetical protein TC0091 2 None None None 15835062 Pathogen - hypothetical protein TC0444 1 None None None 15834977 Pathogen - hypothetical protein TC0358 1 None None None 15835154 Common accA acetyl-CoA carboxylase carboxyltransferase subunit alpha TC0536 203 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 15834626 Common hemB delta-aminolevulinic acid dehydratase TC0001 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 15835307 Common lpxB lipid-A-disaccharide synthase TC0692 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 15835216 Common - hypothetical protein TC0599 36 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 15835228 Common dnaZ DNA polymerase III subunits gamma and tau TC0611 246 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 15834966 Common dnaN DNA polymerase III subunit beta TC0347 215 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 15834745 Common hemY protoporphyrinogen oxidase TC0121 41 COG1232 HemY, Protoporphyrinogen oxidase Coenzyme metabolism 15835515 Common - hypothetical protein TC0901 40 COG1478 COG1478, Uncharacterized conserved protein Function unknown 15835511 Common ung uracil-DNA glycosylase TC0897 128 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 15835488 Common trpS tryptophanyl-tRNA synthetase TC0874 249 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15835440 Common trxA thioredoxin TC0826 233 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 15834781 Common - hypothetical protein TC0161 7 COG2143 COG2143, Thioredoxin-related protein Posttranslational modification, protein turnover, chaperones 15835456 Common - branched-chain amino acid transport system carrier protein, putative TC0842 50 COG1114 BrnQ, Branched-chain amino acid permeases Amino acid transport and metabolism 15834953 Common pgd 6-phosphogluconate dehydrogenase TC0333 176 COG0362 Gnd, 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 15835478 Common mutL DNA mismatch repair protein TC0864 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 15834768 Common - hypothetical protein TC0148 84 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 15835389 Common - hypothetical protein TC0775 15 COG1768 COG1768, Predicted phosphohydrolase General function prediction only 15834738 Pathogen - hypothetical protein TC0113 1 None None None 15834653 Pathogen - hypothetical protein TC0028 2 None None None 15835152 Pathogen - hypothetical protein TC0534 2 None None None 15834935 Common pepA leucyl aminopeptidase TC0315 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 15835289 Common grpE grpE protein TC0674 232 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 15835292 Common - hypothetical protein TC0677 36 COG1579 COG1579, Zn-ribbon protein, possibly nucleic acid-binding General function prediction only 15835075 Common zwf glucose-6-phosphate 1-dehydrogenase TC0457 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 15835222 Common xseA exodeoxyribonuclease VII large subunit TC0605 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 15834836 Common trmB tRNA (guanine-N(7))-methyltransferase TC0216 158 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 15834800 Common pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TC0180 204 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 15835408 Common rpoA DNA-directed RNA polymerase subunit alpha TC0794 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 15835165 Common dnaA chromosomal replication initiation protein TC0547 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 15835394 Common polA DNA polymerase I TC0780 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 15834999 Common fabI enoyl-(acyl carrier protein) reductase TC0380 187 COG0623 FabI, Enoyl- acyl-carrier-protein 15835378 Common - peptide ABC transporter, permease protein, putative TC0764 215 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15834842 Common rpmI 50S ribosomal protein L35 TC0222 92 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 15835047 Common - hypothetical protein TC0429 76 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 15835414 Common rplR 50S ribosomal protein L18 TC0800 216 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 15835268 Common - amino acid permease TC0653 85 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15835146 Common - hypothetical protein TC0528 197 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 15834911 Common rpmE2 50S ribosomal protein L31 type B TC0291 120 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 15835169 Common - Na(+)-translocating NADH-quinone reductase subunit C TC0551 44 COG2869 NqrC, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC Energy production and conversion 15835390 Common glgC glucose-1-phosphate adenylyltransferase TC0776 170 COG0448 GlgC, ADP-glucose pyrophosphorylase Carbohydrate transport and metabolism 15835138 Pathogen - hypothetical protein TC0520 1 None None None 15835012 Pathogen - hypothetical protein TC0393 1 None None None 15835338 Common rpsL 30S ribosomal protein S12 TC0723 243 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 15835493 Pathogen - hypothetical protein TC0879 3 None None None 15834779 Common priA primosome assembly protein PriA TC0159 212 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 15835130 Common - outer membrane protein, putative TC0512 159 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 15835311 Common - ABC transporter, periplasmic substrate-binding protein, putative TC0696 61 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 15834662 Pathogen - hypothetical protein TC0037 2 None None None 15835104 Pathogen - hypothetical protein TC0486 2 None None None 15835474 Common gspE general secretion pathway protein E TC0860 168 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 15835212 Pathogen secE preprotein translocase subunit SecE TC0595 3 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 15834691 Pathogen - hypothetical protein TC0066 1 None None None 15835399 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TC0785 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 15835424 Common rplV 50S ribosomal protein L22 TC0810 215 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 15835005 Common groEL chaperonin GroEL TC0386 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 15835355 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase TC0740 210 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 15835190 Pathogen - hypothetical protein TC0573 1 None None None 15834709 Pathogen - hypothetical protein TC0084 2 None None None 15835194 Pathogen - hypothetical protein TC0577 3 None None None 15834994 Common trxB thioredoxin reductase TC0375 248 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 15834758 Common mraY phospho-N-acetylmuramoyl-pentapeptide-transferase TC0138 227 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 15834703 Common clpX ATP-dependent protease ATP-binding subunit TC0078 228 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 15835464 Common sctL type III secretion system protein TC0850 47 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 15834872 Common - type III secretion chaperone TC0252 18 None None None 15835273 Common hflX GTP-binding protein HflX TC0658 219 COG2262 HflX, GTPases General function prediction only 15834946 Common - hypothetical protein TC0326 143 COG1496 COG1496, Uncharacterized conserved protein Function unknown 15835434 Common lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TC0820 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 15835350 Common uppS undecaprenyl pyrophosphate synthetase TC0735 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 15835297 Common lpxK tetraacyldisaccharide 4'-kinase TC0682 130 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 15834723 Common - biotin--protein ligase TC0098 40 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 15834920 Pathogen - hypothetical protein TC0300 2 None None None 15834814 Pathogen - hypothetical protein TC0194 3 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 15834648 Common - ABC transporter, ATP-binding protein TC0023 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 15835051 Common - phospholipase D family protein TC0433 21 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 15834735 Common - hypothetical protein TC0110 16 COG2940 COG2940, Proteins containing SET domain General function prediction only 15835443 Common aspS aspartyl-tRNA synthetase TC0829 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15835083 Common tgt queuine tRNA-ribosyltransferase TC0465 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 15835419 Common rplN 50S ribosomal protein L14 TC0805 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 15834794 Common mutS DNA mismatch repair protein TC0174 203 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 15834877 Common glgB glycogen branching enzyme TC0257 152 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 15835128 Common fabH 3-oxoacyl-(acyl carrier protein) synthase III TC0510 215 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 15834710 Pathogen - hypothetical protein TC0085 2 None None None 15835457 Common - helicase, Snf2 family TC0843 134 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 15834802 Common ctc 50S ribosomal protein L25/general stress protein Ctc TC0182 154 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 15834975 Pathogen - hypothetical protein TC0356 2 None None None 15835241 Common xerC site-specific tyrosine recombinase XerC TC0626 228 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 15835322 Common - anti-anti-sigma factor TC0707 50 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 15834902 Common cydB cytochrome D ubiquinol oxidase, subunit II TC0282 147 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 15834834 Common nrdA ribonucleotide-diphosphate reductase subunit alpha TC0214 222 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 15835320 Common - hypothetical protein TC0705 20 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 15834718 Common - NifU-related protein TC0093 13 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 15835359 Common - hypothetical protein TC0745 16 COG5531 COG5531, SWIB-domain-containing proteins implicated in chromatin remodeling Chromatin structure and dynamics 15834824 Common - Mtr/TnaB/TyrO permease family protein TC0204 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 15834682 Common - ABC transporter, ATP-binding protein TC0057 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 15834961 Common - ABC transporter, permease protein, putative TC0342 131 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 15834699 Common secA preprotein translocase subunit SecA TC0074 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 15835386 Common hemH ferrochelatase TC0772 176 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 15834748 Common trcF transcription-repair coupling factor TC0124 215 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 15834750 Pathogen - hypothetical protein TC0126 1 None None None 15834632 Common - exodeoxyribonuclease V, beta chain, putative TC0007 226 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 15834651 Pathogen - hypothetical protein TC0026 1 None None None 15835497 Common - mttC protein, putative TC0883 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 15835368 Common - hypothetical protein TC0754 8 None None None 15835167 Pathogen - hypothetical protein TC0549 2 None None None 15835246 Pathogen secG preprotein translocase subunit SecG TC0631 2 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 15835150 Common - DNA polymerase III subunit epsilon TC0532 184 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 15835482 Pathogen - hypothetical protein TC0868 2 None None None 15835116 Pathogen - hypothetical protein TC0498 1 None None None 15835093 Common - hypothetical protein TC0475 5 None None None 15834951 Common - RNA polymerase sigma factor sigma-28 TC0331 216 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 15835427 Common rplW 50S ribosomal protein L23 TC0813 6 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 15834788 Pathogen rpmH 50S ribosomal protein L34 TC0168 2 COG0230 RpmH, Ribosomal protein L34 Translation, ribosomal structure and biogenesis 15835163 Pathogen - hypothetical protein TC0545 2 None None None 15835451 Common - RsbW protein, putative TC0837 18 COG2172 RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) Signal transduction mechanisms 15835250 Common - hypothetical protein TC0635 105 COG1331 COG1331, Highly conserved protein containing a thioredoxin domain Posttranslational modification, protein turnover, chaperones 15834980 Common rpmB 50S ribosomal protein L28 TC0361 98 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 15834761 Common - cell division protein, FtsW/RodA/SpovE family TC0141 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 15835479 Common sycD type III secretion chaperone SycD TC0865 8 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 15835513 Common - RNA polymerase factor sigma-54 TC0899 144 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 15835533 Pathogen - hypothetical protein TC0920 3 None None None 15835039 Pathogen - hypothetical protein TC0421 2 None None None 15834987 Common ribF bifunctional riboflavin kinase/FMN adenylyltransferase TC0368 210 COG0196 RibF, FAD synthase Coenzyme metabolism 15834736 Common - hypothetical protein TC0111 58 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 15835465 Common sctR type III secretion system protein TC0851 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 15834907 Pathogen - hypothetical protein TC0287 1 None None None 15835237 Pathogen - hypothetical protein TC0622 1 None None None 15835489 Common uvrB excinuclease ABC subunit B TC0875 224 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 15834766 Common - anti-anti-sigma factor TC0146 49 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 15835025 Common - amino acid ABC transporter, ATP-binding protein TC0406 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 15834865 Common - sulfate transporter family protein TC0245 161 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 15835449 Pathogen - hypothetical protein TC0835 3 COG4105 ComL, DNA uptake lipoprotein General function prediction only 15834851 Common rpsO 30S ribosomal protein S15 TC0231 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 15834689 Common - phosphate permease family protein TC0064 141 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 15834962 Common dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase TC0343 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 15834785 Pathogen - hypothetical protein TC0165 1 None None None 15835026 Pathogen - hypothetical protein TC0408 3 None None None 15834928 Pathogen - hypothetical protein TC0308 3 None None None 15835220 Common trpF N-(5'-phosphoribosyl)anthranilate isomerase TC0603 162 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 15834921 Common metG methionyl-tRNA synthetase TC0301 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15835256 Common lysC aspartate kinase TC0641 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 15835483 Common - hypothetical protein TC0869 27 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 15835421 Pathogen rpmC 50S ribosomal protein L29 TC0807 2 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 15835525 Pathogen - hypothetical protein TC0911 2 COG5185 HEC1, Protein involved in chromosome segregation, interacts with SMC proteins Cell division and chromosome partitioning 15834697 Common psd phosphatidylserine decarboxylase TC0072 97 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 15835192 Common pknD serine/threonine-protein kinase TC0575 151 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 15834979 Pathogen - hypothetical protein TC0360 1 None None None 15834796 Pathogen - hypothetical protein TC0176 2 None None None 15834879 Pathogen - hypothetical protein TC0259 1 None None None 15834705 Common tig trigger factor TC0080 176 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 15835054 Common - phospholipase D family protein TC0436 21 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 15834874 Pathogen - hypothetical protein TC0254 1 None None None 15834631 Common - hypothetical protein TC0006 4 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 15834726 Common - hypothetical protein TC0101 3 COG1814 COG1814, Uncharacterized membrane protein Function unknown 15834811 Pathogen - hypothetical protein TC0191 1 None None None 15835291 Common - exoribonuclease, VacB/Rnb family TC0676 192 COG0557 VacB, Exoribonuclease R Transcription 15835095 Common pfkA-1 diphosphate--fructose-6-phosphate 1-phosphotransferase TC0477 105 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 15834752 Common - AMP nucleosidase TC0132 87 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 15835461 Common lipA lipoyl synthase TC0847 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 15835186 Pathogen - hypothetical protein TC0569 2 None None None 15834725 Common - cation-transporting ATPase, E1-E2 family TC0100 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 15834671 Common - ATP:guanido phosphotransferase TC0046 22 COG3869 COG3869, Arginine kinase Amino acid transport and metabolism 15835207 Common rplL 50S ribosomal protein L7/L12 TC0590 214 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 15835106 Common - amino acid antiporter TC0488 102 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15835475 Common gspD general secretion pathway protein D TC0861 136 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 15835316 Common rplU 50S ribosomal protein L21 TC0701 188 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 15834886 Pathogen - hypothetical protein TC0266 1 None None None 15834908 Common ileS isoleucyl-tRNA synthetase TC0288 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15835136 Common - branched-chain alpha-keto acid dehydrogenase subunit E2 TC0518 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 15835406 Common gap glyceraldehyde-3-phosphate dehydrogenase TC0792 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 15835305 Common - sodium/alanine symporter family protein TC0690 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 15835088 Common - O-sialoglycoprotein endopeptidase TC0470 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 15835357 Common - hypothetical protein TC0742 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 15835371 Common - hypothetical protein TC0757 25 COG1723 COG1723, Uncharacterized conserved protein Function unknown 15835174 Common - phospholipase D family protein TC0557 52 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 15835396 Common tlc-2 ADP, ATP carrier protein TC0782 11 COG3202 COG3202, ATP/ADP translocase Energy production and conversion 15835196 Common - V-type ATP synthase subunit I TC0579 19 COG1269 NtpI, Archaeal/vacuolar-type H+-ATPase subunit I Energy production and conversion 15835006 Common groES co-chaperonin GroES TC0387 213 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 15834917 Common rplS 50S ribosomal protein L19 TC0297 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 15835332 Pathogen hemD uroporphyrinogen-III synthase TC0717 4 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 15835158 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TC0540 214 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 15834664 Pathogen - hypothetical protein TC0039 2 None None None 15834833 Common - CDP-diacylglycerol--serine O-phosphatidyltransferase, putative TC0213 144 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 15835072 Common kdsB 3-deoxy-manno-octulosonate cytidylyltransferase TC0454 146 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 15835065 Common - phospholipase D family protein TC0447 18 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 15835144 Common - hypothetical protein TC0526 110 COG1694 MazG, Predicted pyrophosphatase General function prediction only 15835139 Common dnaA chromosomal replication initiation protein TC0521 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 15835151 Common - hypothetical protein TC0533 35 COG2107 COG2107, Predicted periplasmic solute-binding protein General function prediction only 15834899 Common - hypothetical protein TC0279 4 None None None 15835181 Common - PTS system, IIA component TC0564 135 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 15835426 Common rplB 50S ribosomal protein L2 TC0812 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 15835018 Common accB acetyl-CoA carboxylase biotin carboxyl carrier protein subunit TC0399 172 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 15834892 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B TC0272 209 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 15835113 Pathogen - hypothetical protein TC0495 1 None None None 15835264 Common aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein TC0649 152 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 15835037 Pathogen - hypothetical protein TC0419 2 None None None 15834919 Common gmk guanylate kinase TC0299 214 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 15834734 Common - hypothetical protein TC0109 127 COG1881 COG1881, Phospholipid-binding protein General function prediction only 15834950 Common - type III secretion system protein TC0330 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 15835507 Common groEL-2 60 kDa chaperonin TC0893 217 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 15835329 Common dapF diaminopimelate epimerase TC0714 168 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 15834957 Pathogen - hypothetical protein TC0337 1 None None None 15834932 Common - glycosyl hydrolase family protein TC0312 160 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 15835048 Common - ABC transporter, ATP-binding protein TC0430 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 15835452 Pathogen - hypothetical protein TC0838 3 None None None 15834831 Common - metalloprotease, insulinase family TC0211 36 COG1026 COG1026, Predicted Zn-dependent peptidases, insulinase-like General function prediction only 15835269 Common - oxidoreductase, DadA family TC0654 11 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 15834641 Pathogen - hypothetical protein TC0016 2 None None None 15835519 Common rpoD RNA polymerase sigma factor RpoD TC0905 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 15835330 Common clpP-2 ATP-dependent Clp protease proteolytic subunit TC0715 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 15835243 Common maf Maf-like protein TC0628 196 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 15834773 Common - inorganic pyrophosphatase TC0153 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 15834906 Pathogen - hypothetical protein TC0286 2 None None None 15835503 Common - peptidoglycan associated lipoprotein, putative TC0889 150 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 15835324 Pathogen - hypothetical protein TC0709 2 None None None 15835226 Common pyk pyruvate kinase TC0609 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 15835086 Pathogen - hypothetical protein TC0468 2 None None None 15834858 Pathogen - hypothetical protein TC0238 3 None None None 15835278 Pathogen - hypothetical protein TC0663 3 None None None 15835444 Common hisS histidyl-tRNA synthetase TC0830 247 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15834862 Common - hypothetical protein TC0242 44 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 15835160 Common - penicillin-binding protein TC0542 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 15834939 Pathogen - hypothetical protein TC0319 2 None None None 15834996 Pathogen - hypothetical protein TC0377 1 None None None 15834649 Pathogen - hypothetical protein TC0024 2 None None None 15834658 Common hemA glutamyl-tRNA reductase TC0033 164 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 15835367 Common - sigma-54 dependent response regulator TC0753 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 15834712 Common gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TC0087 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 15835508 Common - hypothetical protein TC0894 51 COG3876 COG3876, Uncharacterized protein conserved in bacteria Function unknown 15834813 Common cafA ribonuclease G TC0193 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 15835249 Pathogen - hypothetical protein TC0634 3 None None None 15834849 Common - cell division protein FtsH, putative TC0229 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 15835070 Common - ABC transporter, ATP-binding protein TC0452 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 15835388 Common - hypothetical protein TC0774 210 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 15834893 Pathogen - hypothetical protein TC0273 2 COG4666 COG4666, TRAP-type uncharacterized transport system, fused permease components General function prediction only 15834823 Common glmS D-fructose-6-phosphate amidotransferase TC0203 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 15835202 Pathogen - hypothetical protein TC0585 2 None None None 15834633 Common - exodeoxyribonuclease V, gamma subunit, putative TC0008 17 COG1330 RecC, Exonuclease V gamma subunit DNA replication, recombination, and repair 15834867 Common - Na+/H+ antiporter, putative TC0247 33 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 15834807 Common - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TC0187 168 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 15835097 Common pfkA-2 diphosphate--fructose-6-phosphate 1-phosphotransferase TC0479 125 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 15835463 Pathogen - hypothetical protein TC0849 3 None None None 15834985 Common sctU type III secretion system protein TC0366 129 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 15834840 Pathogen - hypothetical protein TC0220 1 None None None 15834969 Common folD methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase TC0350 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 15835530 Common - geranylgeranyl pyrophosphate synthase, putative TC0917 241 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 15835303 Common lspA lipoprotein signal peptidase TC0688 36 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 15835114 Pathogen - hypothetical protein TC0496 1 COG5373 COG5373, Predicted membrane protein Function unknown 15835069 Pathogen - hypothetical protein TC0451 2 None None None 15835280 Common - hypothetical protein TC0665 16 COG4286 COG4286, Uncharacterized conserved protein related to MYG1 family Function unknown 15835347 Common recJ single-stranded-DNA-specific exonuclease RecJ TC0732 192 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 15834974 Pathogen - hypothetical protein TC0355 2 None None None 15835430 Pathogen - hypothetical protein TC0816 2 None None None 15835074 Common - Holliday junction resolvase-like protein TC0456 110 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 15835252 Pathogen - hypothetical protein TC0637 1 None None None 15835437 Common - DNA polymerase III subunit epsilon TC0823 196 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 15834754 Pathogen - hypothetical protein TC0134 2 None None None 15835293 Pathogen - hypothetical protein TC0678 1 None None None 15834706 Common - helicase, Snf2 family TC0081 157 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 15834847 Common - hypothetical protein TC0227 4 COG0795 COG0795, Predicted permeases General function prediction only 15834876 Pathogen - hypothetical protein TC0256 3 None None None 15835428 Common rplD 50S ribosomal protein L4 TC0814 217 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 15834923 Common - hypothetical protein TC0303 23 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 15835447 Common upp uracil phosphoribosyltransferase TC0833 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 15834942 Common - coproporphyrinogen III oxidase TC0322 206 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 15835262 Common aroC chorismate synthase TC0647 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 15835033 Common - dipeptidase, putative TC0415 61 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 15835274 Common - hydrolase, metal-dependent, putative TC0659 86 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 15835055 Pathogen - adherence factor TC0437 4 None None None 15834731 Pathogen - hypothetical protein TC0106 2 None None None 15834770 Common - hypothetical protein TC0150 199 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 15835050 Common - phospholipase D family protein TC0432 19 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 15835172 Common gcvH glycine cleavage system protein H TC0554 185 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 15834666 Pathogen - hypothetical protein TC0041 3 None None None 15835282 Common - hypothetical protein TC0667 46 COG1872 COG1872, Uncharacterized conserved protein Function unknown 15835254 Pathogen - hypothetical protein TC0639 1 None None None 15834818 Pathogen - hypothetical protein TC0198 1 None None None 15834793 Common uvrC excinuclease ABC subunit C TC0173 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 29337301 Common - hypothetical protein TC0114 6 None None None 15835470 Pathogen - hypothetical protein TC0856 2 None None None 15834915 Common rpsP 30S ribosomal protein S16 TC0295 203 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 15835063 Pathogen - hypothetical protein TC0445 1 None None None 15835517 Common folK/P 2-amino-4-hydroxy-6-hydroxymethyldihydropterin pyrophosphokinase/dihydropteroate synthase TC0903 219 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 15835233 Common - 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit TC0618 187 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 15835008 Common clpB ATP-dependent Clp protease, subunit B TC0389 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 15835217 Pathogen - hypothetical protein TC0600 2 None None None 15835499 Common - MotA/TolQ/ExbB proton channel family protein TC0885 146 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 15835326 Common - hypothetical protein TC0711 25 COG1427 COG1427, Predicted periplasmic solute-binding protein General function prediction only 15835183 Common accD acetyl-CoA carboxylase subunit beta TC0566 220 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 15835142 Pathogen - hypothetical protein TC0524 2 None None None 15835334 Common - oxidoreductase, FAD-binding TC0719 89 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 15835101 Common - hypothetical protein TC0483 129 COG1678 COG1678, Putative transcriptional regulator Transcription 161579043 Common rpsT 30S ribosomal protein S20 TC0907 80 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 15835016 Common rpe ribulose-phosphate 3-epimerase TC0397 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 15835108 Common - UvrD/REP helicase family protein TC0490 216 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 15835298 Common - spoU rRNA methylase family protein TC0683 175 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 15835477 Common pepP proline dipeptidase TC0863 248 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 15834673 Common frr ribosome recycling factor TC0048 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 15835188 Common radA DNA repair protein RadA TC0571 203 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 15835318 Pathogen - hypothetical protein TC0703 2 None None None 15835373 Pathogen - hypothetical protein TC0759 2 None None None 15834798 Common glyQS glycyl-tRNA synthetase, tetrameric type, alpha/beta subunits TC0178 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 15834890 Pathogen gatC aspartyl/glutamyl-tRNA amidotransferase subunit C TC0270 2 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 15835134 Common pdhA pyruvate dehydrogenase, E1 component, alpha subunit TC0516 154 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 15835121 Pathogen incB inclusion membrane protein B TC0503 2 None None None 15834775 Common - 3`(2`),5`-bisphosphate nucleotidase, putative TC0155 90 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 15835339 Pathogen - hypothetical protein TC0724 2 None None None 15835301 Common - hypothetical protein TC0686 176 COG1327 COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Transcription 15834765 Pathogen - hypothetical protein TC0145 3 None None None 15835490 Common eno phosphopyruvate hydratase TC0876 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 15834888 Pathogen - hypothetical protein TC0268 2 None None None 15835234 Common dnaJ dnaJ protein TC0619 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 15835345 Common gltX glutamyl-tRNA synthetase TC0730 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 15834675 Common tsf elongation factor Ts TC0050 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 15835284 Common - L,L-diaminopimelate aminotransferase TC0669 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 15834743 Pathogen hctA histone H1-like protein HC1 TC0119 3 None None None 15835205 Common rpoC DNA-directed RNA polymerase subunit beta' TC0588 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 15835460 Common - dihydrolipoamide dehydrogenase TC0846 249 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 15834714 Pathogen - hypothetical protein TC0089 2 None None None 15834998 Common - hypothetical protein TC0379 22 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 15834904 Pathogen - hypothetical protein TC0284 3 None None None 15834668 Pathogen sctQ type III secretion system protein TC0043 3 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 15834964 Common - hypothetical protein TC0345 27 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 15835035 Common - hypothetical protein TC0417 29 COG1738 COG1738, Uncharacterized conserved protein Function unknown 15835398 Common dnaB replicative DNA helicase TC0784 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 15834629 Common - transcript cleavage factor/unknown domain fusion protein TC0004 196 COG1747 COG1747, Uncharacterized N-terminal domain of the transcription elongation factor GreA Function unknown 15835409 Common rpsK 30S ribosomal protein S11 TC0795 247 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 15834955 Common tlc-1 ADP, ATP carrier protein TC0335 18 COG3202 COG3202, ATP/ADP translocase Energy production and conversion 15834732 Pathogen - hypothetical protein TC0107 3 None None None 15835215 Pathogen - hypothetical protein TC0598 2 None None None 15835404 Pathogen - hypothetical protein TC0790 2 None None None 15835505 Pathogen - hypothetical protein TC0891 3 None None None 15835454 Pathogen - hypothetical protein TC0840 1 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 15835119 Common - sodium:dicarboxylate symporter family protein TC0501 116 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 15834930 Common ruvB Holliday junction DNA helicase B TC0310 218 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 15834643 Common - 5-formyltetrahydrofolate cyclo-ligase, putative TC0018 140 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 15835084 Common mgtE magnesium transporter TC0466 167 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 15835156 Common - integration host factor beta subunit, putative TC0538 163 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 15835043 Common - monooxygenase-related protein TC0425 5 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 15835067 Common - hypothetical protein TC0449 14 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 15834944 Common kgd alpha-ketoglutarate decarboxylase TC0324 152 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 15835224 Pathogen - hypothetical protein TC0607 2 None None None 15835340 Common - tail specific protease precursor, putative TC0725 181 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 15835111 Common ubiX aromatic acid decarboxylase TC0493 156 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 15834983 Common sctW type III secreted protein SctW TC0364 8 None None None 15834972 Pathogen - hypothetical protein TC0353 2 None None None 15834937 Pathogen - hypothetical protein TC0317 3 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 15835501 Pathogen - hypothetical protein TC0887 2 None None None 15834828 Common sucC succinyl-CoA synthetase subunit beta TC0208 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 15834656 Common gyrA-1 DNA topoisomerase IV subunit A TC0031 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 15835361 Common ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TC0747 183 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 15835200 Pathogen - hypothetical protein TC0583 3 None None None 15834636 Pathogen - hypothetical protein TC0011 1 None None None 15834728 Common ribG riboflavin-specific deaminase TC0103 232 COG1985 RibD, Pyrimidine reductase, riboflavin biosynthesis Coenzyme metabolism 15834809 Common - hypothetical protein TC0189 16 None None None 15834821 Pathogen - hypothetical protein TC0201 2 None None None 15834869 Common ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TC0249 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane