IslandPathversion 1.0

IslandPath Analysis: Solibacter usitatus Ellin6076



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.86 STD DEV: 3.38
Solibacter usitatus Ellin6076, complete genome - 1..9965640
7826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.47	-1	89..1402	+	437	116619146	-	Acid_0001	-	chromosomal replication initiator protein DnaA
2	 60.77	0	1637..2755	+	372	116619147	-	Acid_0002	-	DNA polymerase III, beta subunit
3	 59.52	0	2781..5228	+	815	116619148	-	Acid_0003	-	DNA gyrase subunit B
4	 66.54	+1	5232..6827	-	531	116619149	-	Acid_0004	-	TPR repeat-containing protein
5	 62.86	0	6844..8496	-	550	116619150	-	Acid_0005	-	peptidase M28
6	 65.12	0	8627..9400	+	257	116619151	-	Acid_0006	-	electron transport protein SCO1/SenC
7	 66.92	+1	9397..10986	+	529	116619152	-	Acid_0007	-	TPR repeat-containing protein
8	 65.86	+1	10983..11723	+	246	116619153	-	Acid_0008	-	methyltransferase type 11
9	 61.45	0	12211..12804	+	197	116619154	-	Acid_0009	-	hypothetical protein
10	 55.17	-1	12823..12996	+	57	116619155	-	Acid_0010	-	hypothetical protein
11	 60.09	0	13323..13550	-	75	116619156	-	Acid_0011	-	hypothetical protein
12	 60.88	0	13560..17015	-	1151	116619157	-	Acid_0012	-	DNA polymerase III, alpha subunit
13	 64.12	0	17148..19577	-	809	116619158	-	Acid_0013	-	hypothetical protein
14	 65.51	+1	19776..20984	-	402	116619159	-	Acid_0014	-	phosphoribosylamine--glycine ligase
15	 62.59	0	20991..22805	+	604	116619160	-	Acid_0015	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
16	 58.46	-1	22890..23669	+	259	116619161	-	Acid_0016	-	chromosome segregation ATPase
17	 61.42	0	23764..24564	+	266	116619162	-	Acid_0017	-	chromosome segregation DNA-binding protein
18	 55.38	-1	24595..24975	-	126	116619163	-	Acid_0018	-	MerR family transcriptional regulator
19	 63.35	0	24996..26984	-	662	116619164	-	Acid_0019	-	hypothetical protein
20	 64.72	0	26968..28866	-	632	116619165	-	Acid_0020	-	tetratricopeptide domain-containing protein
21	 65.20	0	28979..32245	+	1088	116619166	-	Acid_0021	-	multi-sensor signal transduction histidine kinase
22	 61.86	0	32271..33581	-	436	116619167	-	Acid_0022	-	ankyrin
23	 62.55	0	33776..35110	+	444	116619168	-	Acid_0023	-	oxidoreductase domain-containing protein
24	 64.69	0	35408..38041	+	877	116619169	-	Acid_0024	-	serine/threonine protein kinase
25	 59.52	0	38053..38304	+	83	116619170	-	Acid_0025	-	hypothetical protein
26	 60.18	0	38320..38874	+	184	116619171	-	Acid_0026	-	deaminase-reductase domain-containing protein
27	 65.05	0	38894..39757	-	287	116619172	-	Acid_0027	-	xylose isomerase domain-containing protein
28	 59.63	0	39793..40659	+	288	116619173	-	Acid_0028	-	hypothetical protein
29	 69.53	+2	41069..44032	+	987	116619174	-	Acid_0029	-	ATP-dependent nuclease subunit B-like protein
30	 68.90	+2	44163..47429	+	1088	116619175	-	Acid_0030	-	UvrD/REP helicase
31	 64.58	0	47426..48145	-	239	116619176	-	Acid_0031	-	hypothetical protein
32	 64.53	0	48142..48609	-	155	116619177	-	Acid_0032	-	Rieske (2Fe-2S) domain-containing protein
33	 62.51	0	48638..49552	-	304	116619178	-	Acid_0033	-	hypothetical protein
34	 64.70	0	49557..51587	-	676	116619179	-	Acid_0034	-	hypothetical protein
35	 64.44	0	51764..55318	+	1184	116619180	-	Acid_0035	-	hypothetical protein
36	 61.73	0	55331..57457	+	708	116619181	-	Acid_0036	-	hypothetical protein
37	 64.51	0	57495..58931	-	478	116619182	-	Acid_0037	-	lactaldehyde dehydrogenase
38	 65.20	0	58984..60966	+	660	116619183	-	Acid_0038	-	heparinase II/III family protein
39	 61.84	0	61055..62317	+	420	116619184	-	Acid_0039	-	glutamate dehydrogenase (NADP)
40	 62.04	0	62416..63582	+	388	116619185	-	Acid_0040	-	acyl-CoA dehydrogenase domain-containing protein
41	 59.80	0	63617..65656	+	679	116619186	-	Acid_0041	-	integral membrane protein-like protein
42	 61.72	0	65775..69452	+	1225	116619187	-	Acid_0042	-	hypothetical protein
43	 56.81	-1	69600..70208	+	202	116619188	-	Acid_0043	-	outer membrane lipoprotein carrier protein LolA
44	 58.40	-1	70211..71419	+	402	116619189	-	Acid_0044	-	type II secretion system protein
45	 59.78	0	71430..73055	+	541	116619190	-	Acid_0045	-	type II secretion system protein E
46	 62.95	0	73298..74185	+	295	116619191	-	Acid_0046	-	hypothetical protein
47	 59.30	0	74236..74751	+	171	116619192	-	Acid_0047	-	hypothetical protein
48	 60.94	0	74735..75397	+	220	116619193	-	Acid_0048	-	fimbrial assembly family protein
49	 63.14	0	75394..76158	+	254	116619194	-	Acid_0049	-	hypothetical protein
50	 65.17	0	76187..77653	+	488	116619195	-	Acid_0050	-	hypothetical protein
51	 63.09	0	77679..78377	+	232	116619196	-	Acid_0051	-	cytidylate kinase
52	 65.92	+1	78374..79846	+	490	116619197	-	Acid_0052	-	aspartate kinase
53	 60.36	0	79904..81838	+	644	116619198	-	Acid_0053	-	PpiC-type peptidyl-prolyl cis-trans isomerase
54	 64.07	0	81841..82494	+	217	116619199	-	Acid_0054	-	hypothetical protein
55	 63.40	0	82491..83102	-	203	116619200	-	Acid_0055	-	hypothetical protein
56	 57.78	-1	83153..83332	+	59	116619201	-	Acid_0056	-	hypothetical protein
57	 63.01	0	83455..85095	+	546	116619202	-	Acid_0057	-	dihydroorotase
58	 65.10	0	85040..86248	-	402	116619203	-	Acid_0058	-	aspartate aminotransferase
59	 61.41	0	86376..87650	+	424	116619204	-	Acid_0059	-	major facilitator transporter
60	 66.77	+1	87655..89523	+	622	116619205	-	Acid_0060	-	hypothetical protein
61	 64.98	0	89536..90186	+	216	116619206	-	Acid_0061	-	allophanate hydrolase subunit 1
62	 67.86	+1	90225..91064	+	279	116619207	-	Acid_0062	-	urea amidolyase related protein
63	 64.61	0	91061..91741	+	226	116619208	-	Acid_0063	-	LamB/YcsF family protein
64	 64.01	0	91747..93324	+	525	116619209	-	Acid_0064	-	hypothetical protein
65	 62.91	0	93372..94967	-	531	116619210	-	Acid_0065	-	beta-lactamase
66	 63.87	0	94964..95785	-	273	116619211	-	Acid_0066	-	uroporphyrin-III C/tetrapyrrole methyltransferase
67	 60.92	0	95861..97270	+	469	116619212	-	Acid_0067	-	L-glutamine synthetase
68	 65.66	+1	97301..97795	+	164	116619213	-	Acid_0068	-	MOSC domain-containing protein
69	 64.72	0	97797..100523	+	908	116619214	-	Acid_0069	-	(glutamate--ammonia-ligase) adenylyltransferase
70	 63.79	0	100678..102174	+	498	116619215	-	Acid_0070	-	integral membrane sensor signal transduction histidine kinase
71	 62.59	0	102171..102857	+	228	116619216	-	Acid_0071	-	two component transcriptional regulator
72	 60.00	0	102923..103372	+	149	116619217	-	Acid_0072	-	hypothetical protein
73	 61.45	0	103564..105270	+	568	116619218	-	Acid_0073	-	potassium-transporting ATPase subunit A
74	 64.16	0	105272..107386	+	704	116619219	-	Acid_0074	-	K+-transporting ATPase, B subunit
75	 64.60	0	107397..107978	+	193	116619220	-	Acid_0075	-	potassium-transporting ATPase, C subunit
76	 66.57	+1	108011..109051	+	346	116619221	-	Acid_0076	-	osmosensitive K+ channel histidine kinase sensor subunit
77	 63.78	0	109048..110085	+	345	116619222	-	Acid_0077	-	osmosensitive K+ channel His kinase sensor
78	 57.83	-1	110105..110953	+	282	116619223	-	Acid_0078	-	hypothetical protein
79	 62.66	0	111050..111973	+	307	116619224	-	Acid_0079	-	ABC transporter related
80	 62.84	0	111970..114162	+	730	116619225	-	Acid_0080	-	ABC-2 type transporter
81	 56.81	-1	114049..115002	-	317	116619226	-	Acid_0081	-	metallophosphoesterase
82	 60.38	0	114999..115523	-	174	116619227	-	Acid_0082	-	hypothetical protein
83	 60.46	0	115513..116607	-	364	116619228	-	Acid_0083	-	phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like protein
84	 61.99	0	116688..117692	+	334	116619229	-	Acid_0084	-	hypothetical protein
85	 61.93	0	117791..119605	-	604	116619230	-	Acid_0085	-	ABC transporter related
86	 62.35	0	119653..120510	-	285	116619231	-	Acid_0086	-	alpha/beta hydrolase fold
87	 69.16	+2	120686..121687	-	333	116619232	-	Acid_0087	-	electron transfer flavoprotein alpha subunit-like protein
88	 66.67	+1	121689..122501	-	270	116619233	-	Acid_0088	-	electron transfer flavoprotein beta subunit-like protein
89	 65.31	+1	122655..123905	-	416	116619234	-	Acid_0089	-	GDSL family lipase
90	 62.14	0	124015..125736	+	573	116619235	-	Acid_0090	-	hypothetical protein
91	 62.21	0	125733..126203	+	156	116619236	-	Acid_0091	-	hypothetical protein
92	 64.65	0	126485..127969	+	494	116619237	-	Acid_0092	-	carboxylesterase, type B
93	 64.92	0	127987..129822	-	611	116619238	-	Acid_0093	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
94	 67.16	+1	129819..132029	-	736	116619239	-	Acid_0094	-	acyl-CoA dehydrogenase domain-containing protein
95	 60.11	0	132219..132584	+	121	116619240	-	Acid_0095	-	hypothetical protein
96	 66.61	+1	132586..134412	-	608	116619241	-	Acid_0096	-	peptidase M56, BlaR1
97	 57.96	-1	134399..134800	-	133	116619242	-	Acid_0097	-	CopY family transcriptional regulator
98	 62.55	0	135455..136426	+	323	116619243	-	Acid_0099	-	hypothetical protein
99	 59.24	0	136401..137168	-	255	116619244	-	Acid_0100	-	hypothetical protein
100	 63.41	0	137244..137489	-	81	116619245	-	Acid_0101	-	hypothetical protein
61.86	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.