IslandPath Analysis: Pseudomonas syringae pv. syringae B728a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.35   STD DEV: 4.19
Pseudomonas syringae pv. syringae B728a, complete genome - 1..6093698
5089 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.14	0	1..1536	+	511	66043272	dnaA	Psyr_0001	-	chromosomal replication initiation protein
2	 57.70	0	1575..2678	+	367	66043273	-	Psyr_0002	-	DNA polymerase III subunit beta
3	 57.07	0	2701..3804	+	367	66043274	recF	Psyr_0003	-	recombination protein F
4	 56.53	0	3809..6226	+	805	66043275	gyrB	Psyr_0004	-	DNA gyrase subunit B
5	 54.28	-1	6282..7169	-	295	66043276	-	Psyr_0005	-	hypothetical protein
6	 59.61	0	7197..8231	-	344	66043277	-	Psyr_0006	-	putative phenylacetaldoxime dehydratase.
7	 58.75	0	8233..9243	-	336	66043278	-	Psyr_0007	-	aliphatic nitrilase
8	 56.00	0	9410..10384	+	324	66043279	-	Psyr_0008	-	helix-turn-helix, AraC type
9	 57.98	0	10525..11295	-	256	66043280	-	Psyr_0009	-	phospholipid/glycerol acyltransferase
10	 60.41	0	11361..11903	-	180	66043281	-	Psyr_0010	-	D,D-heptose 1,7-bisphosphate phosphatase
11	 62.38	0	11916..13970	-	684	66043282	glyS	Psyr_0011	-	glycyl-tRNA synthetase subunit beta
12	 61.11	0	13967..14974	-	335	66043283	glyQ	Psyr_0012	-	glycyl-tRNA synthetase subunit alpha
13	 60.14	0	14995..15546	+	183	66043284	-	Psyr_0013	-	DNA-3-methyladenine glycosylase I
14	 61.26	0	15585..16472	+	295	66043285	-	Psyr_0014	-	lipid A biosynthesis lauroyl acyltransferase
15	 61.55	0	16812..19175	-	787	66043286	-	Psyr_0015	-	oxidoreductase alpha (molybdopterin) subunit
16	 62.01	0	19329..20702	-	457	66043287	trkA	Psyr_0016	-	potassium transporter peripheral membrane component
17	 65.33	+1	20699..22045	-	448	66043288	-	Psyr_0017	-	Fmu, rRNA SAM-dependent methyltransferase
18	 65.82	+1	22042..22986	-	314	66043289	fmt	Psyr_0018	-	methionyl-tRNA formyltransferase
19	 55.62	0	23040..23546	-	168	66043290	def	Psyr_0019	-	peptide deformylase
20	 61.31	0	23672..24697	+	341	66043291	-	Psyr_0020	-	peptidoglycan-binding LysM
21	 64.16	+1	24821..25939	+	372	66043292	-	Psyr_0021	-	SMF protein
22	 63.98	+1	25978..26535	+	185	66043293	-	Psyr_0022	-	SUA5/yciO/yrdC, N-terminal
23	 63.91	+1	26572..27549	-	325	66043294	-	Psyr_0023	-	zinc-containing alcohol dehydrogenase superfamily protein
24	 61.31	0	27721..28635	+	304	66043295	-	Psyr_0024	-	coproporphyrinogen III oxidase
25	 64.73	+1	28635..29459	+	274	66043296	aroE	Psyr_0025	-	shikimate 5-dehydrogenase
26	 62.40	0	29644..31212	-	522	66043297	-	Psyr_0026	-	Sulfate transporter/antisigma-factor antagonist STAS:sulphate transporter
27	 52.83	-1	31284..31601	-	105	66043298	-	Psyr_0027	-	hypothetical protein
28	 57.71	0	31768..32694	-	308	66043299	-	Psyr_0028	-	substrate-binding region of ABC-type glycine betaine transport system
29	 60.03	0	32731..34236	-	501	66043300	-	Psyr_0029	-	sulfatase
30	 62.99	0	34350..35300	+	316	66043301	-	Psyr_0030	-	regulatory protein, LysR:LysR, substrate-binding
31	 58.79	0	35445..36269	+	274	66043302	-	Psyr_0031	-	Alpha/beta hydrolase fold
32	 62.52	0	36536..37066	-	176	66043303	-	Psyr_0032	-	hypothetical protein
33	 64.57	+1	37192..38001	-	269	66043304	trpA	Psyr_0033	-	tryptophan synthase subunit alpha
34	 61.95	0	37998..39227	-	409	66043305	-	Psyr_0034	-	tryptophan synthase subunit beta
35	 61.34	0	39307..40263	+	318	66043306	-	Psyr_0035	-	regulatory protein, LysR:LysR, substrate-binding
36	 57.80	0	40264..40590	-	108	66043307	-	Psyr_0036	-	hypothetical protein
37	 52.78	-1	40756..40971	+	71	66043308	-	Psyr_0037	-	hypothetical protein
38	 56.89	0	41122..41346	+	74	66043309	-	Psyr_0038	-	hypothetical protein
39	 62.97	0	41484..42485	-	333	66043310	-	Psyr_0039	-	luciferase
40	 55.32	0	42698..43129	+	143	66043311	-	Psyr_0040	-	OsmC-like protein
41	 53.42	-1	43248..43481	+	77	66043312	-	Psyr_0041	-	hypothetical protein
42	 59.92	0	43482..43970	-	162	66043313	-	Psyr_0042	-	putative lipoprotein
43	 60.89	0	44004..45059	+	351	66043314	-	Psyr_0043	-	hypothetical protein
44	 62.27	0	45231..45776	-	181	66043315	-	Psyr_0044	-	hexapaptide repeat-containing transferase
45	 61.79	0	45889..47940	+	683	66043316	-	Psyr_0045	-	oligopeptidase A
46	 56.36	0	47937..48227	+	96	66043317	-	Psyr_0046	-	hypothetical protein
47	 45.21	-2	48272..48574	-	100	66043318	-	Psyr_0047	-	hypothetical protein
48	 50.22	-2	48668..48898	-	76	66043319	-	Psyr_0048	-	hypothetical protein
49	 65.40	+1	49110..51008	-	632	66043320	-	Psyr_0049	-	cytochrome c, class I:Iron permease FTR1
50	 61.61	0	51165..51797	-	210	66043321	-	Psyr_0050	-	lysine exporter protein LysE/YggA
51	 62.96	0	51865..52458	-	197	66043322	-	Psyr_0051	-	hypothetical protein
52	 63.32	0	52475..54385	-	636	66043323	-	Psyr_0052	-	ABC transporter
53	 61.22	0	54432..54908	+	158	66043324	-	Psyr_0053	-	hypothetical protein
54	 62.83	0	54905..55921	-	338	66043325	-	Psyr_0054	-	alginate regulatory protein AlgR3
55	 63.42	0	56138..56815	+	225	66043326	-	Psyr_0055	-	FKBP-type peptidyl-prolyl isomerase, N-terminal:peptidylprolyl isomerase, FKBP-type
56	 57.17	0	56893..57366	-	157	161486741	-	Psyr_0056	-	anti-RNA polymerase sigma 70 factor
57	 56.21	0	57384..57536	-	50	66043328	-	Psyr_0057	-	hypothetical protein
58	 60.42	0	57541..58068	-	175	66043329	-	Psyr_0058	-	disulfide bond formation protein DsbB
59	 63.05	0	58285..59529	-	414	66043330	-	Psyr_0059	-	HemY, N-terminal:HemY, N-terminal:HemY, N-terminal
60	 63.18	0	59526..60701	-	391	66043331	-	Psyr_0060	-	hypothetical protein
61	 63.82	+1	60701..61474	-	257	66043332	-	Psyr_0061	-	uroporphyrinogen-III synthase
62	 63.80	+1	61471..62412	-	313	66043333	hemC	Psyr_0062	-	porphobilinogen deaminase
63	 61.85	0	62645..63391	-	248	66043334	-	Psyr_0063	-	response regulator receiver:LytTr DNA-binding region
64	 58.54	0	63388..64470	-	360	66043335	-	Psyr_0064	-	histidine kinase internal region
65	 62.87	0	64605..65999	+	464	66043336	-	Psyr_0065	-	argininosuccinate lyase
66	 63.53	0	66405..67646	+	413	66043337	-	Psyr_0066	-	bifunctional spore maturation protein, fused SpmA/SpmB
67	 61.56	0	67651..68844	-	397	66043338	-	Psyr_0067	-	hypothetical protein
68	 61.37	0	68941..70317	-	458	66043339	-	Psyr_0068	-	insulinase-like:peptidase M16, C-terminal
69	 62.37	0	70375..72027	-	550	66043340	-	Psyr_0069	-	Na+/Pi-cotransporter:Na/Pi cotransporter II-related
70	 60.67	0	72227..73060	+	277	66043341	-	Psyr_0070	-	hypothetical protein
71	 62.27	0	72996..74972	-	658	66043342	-	Psyr_0071	-	histidine kinase, HAMP region: chemotaxis sensory transducer
72	 61.13	0	75159..76079	-	306	66043343	-	Psyr_0072	-	regulatory protein, LysR:LysR, substrate-binding
73	 64.06	+1	76238..77620	+	460	66043344	-	Psyr_0073	-	multidrug efflux protein NorA
74	 63.66	+1	77633..79297	-	554	66043345	-	Psyr_0074	-	GGDEF
75	 60.55	0	79502..81511	+	669	66043346	-	Psyr_0075	-	ATP-dependent DNA helicase RepA
76	 59.82	0	81563..82132	+	189	66043347	-	Psyr_0076	-	xanthine phosphoribosyltransferase
77	 64.09	+1	82724..84043	-	439	66043348	-	Psyr_0077	-	helix-turn-helix, Fis-type
78	 61.36	0	84310..85194	+	294	66043349	-	Psyr_0078	-	Beta-lactamase-like
79	 64.83	+1	85222..86475	+	417	66043350	-	Psyr_0079	-	hypothetical protein
80	 65.68	+1	86468..87280	+	270	66043351	-	Psyr_0080	-	hypothetical protein
81	 62.69	0	87481..88461	-	326	66043352	-	Psyr_0081	-	ABC transporter
82	 61.86	0	88464..89336	-	290	66043353	-	Psyr_0082	-	binding-protein dependent transport system inner membrane protein
83	 63.50	0	89350..90171	-	273	66043354	-	Psyr_0083	-	binding-protein dependent transport system inner membrane protein
84	 59.05	0	90266..91276	-	336	66043355	-	Psyr_0084	-	extracellular solute-binding protein
85	 52.22	-1	91428..91607	-	59	66043356	-	Psyr_0085	-	hypothetical protein
86	 60.68	0	91808..93727	-	639	66043357	-	Psyr_0086	-	PAS:GGDEF
87	 59.75	0	93880..95064	+	394	66043358	-	Psyr_0087	-	Fatty acid desaturase
88	 61.01	0	95185..96192	+	335	66043359	-	Psyr_0088	-	PAS:GGDEF
89	 64.22	+1	96943..98331	-	462	66043360	-	Psyr_0089	-	response regulator receiver
90	 60.89	0	98488..99768	-	426	66043361	-	Psyr_0090	-	4-aminobutyrate aminotransferase
91	 62.37	0	99948..101390	-	480	66043362	gabD	Psyr_0091	-	succinate-semialdehyde dehydrogenase I
92	 60.53	0	101677..102312	-	211	66043363	-	Psyr_0092	-	lysine exporter protein LysE/YggA
93	 63.32	0	102358..103761	-	467	66043364	-	Psyr_0093	-	flavoprotein monooxygenase
94	 55.46	0	103896..104600	+	234	66043365	-	Psyr_0094	-	hypothetical protein
95	 56.59	0	104951..106369	-	472	66043366	-	Psyr_0095	-	transposase IS4
96	 55.79	0	106580..107563	-	327	66043367	-	Psyr_0096	-	transposase IS4
97	 39.53	-2	108211..109452	+	413	66043368	-	Psyr_0097	-	hypothetical protein
98	 43.22	-2	109452..111323	+	623	66043369	-	Psyr_0098	-	hypothetical protein
99	 43.81	-2	111332..111541	+	69	66043370	-	Psyr_0099	-	hypothetical protein
100	 49.06	-2	112435..112968	-	177	66043371	-	Psyr_0100	-	hypothetical protein
59.35	MEAN

4.19	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.