IslandPath Analysis: Pseudomonas syringae pv. phaseolicola 1448A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 58.31   STD DEV: 3.76
Pseudomonas syringae pv. phaseolicola 1448A, complete genome - 1..5928787
4984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.45	0	238..1773	+	511	71737409	dnaA	PSPPH_0001	-	chromosomal replication initiation protein
2	 56.07	0	1812..2915	+	367	71736736	dnaN	PSPPH_0002	-	DNA polymerase III subunit beta
3	 55.43	0	2938..4041	+	367	71736050	recF	PSPPH_0003	-	recombination protein F
4	 55.09	0	4046..6463	+	805	71735115	gyrB	PSPPH_0004	-	DNA gyrase subunit B
5	 60.18	0	6773..8098	+	441	71734716	-	PSPPH_0005	-	oxidoreductase, FAD-binding
6	 60.42	0	9812..11044	-	410	71737362	-	PSPPH_0007	-	IS801, transposase
7	 61.15	0	11095..12453	-	452	71736673	-	PSPPH_0008	-	oxidoreductase, alpha (molybdopterin) subunit, fusion
8	 56.55	0	12962..13732	-	256	71736112	plsC	PSPPH_0009	-	hdtS protein
9	 58.24	0	13798..14343	-	181	71735428	-	PSPPH_0010	-	D,D-heptose 1,7-bisphosphate phosphatase
10	 60.54	0	14354..16408	-	684	71736576	glyS	PSPPH_0011	-	glycyl-tRNA synthetase subunit beta
11	 60.32	0	16405..17412	-	335	71735874	glyQ	PSPPH_0012	-	glycyl-tRNA synthetase subunit alpha
12	 59.60	0	17433..17984	+	183	71733212	tag	PSPPH_0013	-	DNA-3-methyladenine glycosidase I
13	 60.14	0	18023..18910	+	295	71737788	-	PSPPH_0014	-	lipid A biosynthesis lauroyl acyltransferase
14	 62.94	+1	18981..19598	+	205	71734940	-	PSPPH_0015	-	hypothetical protein
15	 60.42	0	19733..20965	-	410	71734986	-	PSPPH_0016	-	IS801, transposase
16	 60.83	0	21016..22644	-	542	71733904	-	PSPPH_0017	-	oxidoreductase alpha (molybdopterin) subunit, fusion
17	 60.48	0	22799..24172	-	457	71736653	trkA	PSPPH_0018	-	potassium transporter peripheral membrane component
18	 64.22	+1	24169..25515	-	448	71736115	sun	PSPPH_0019	-	sun protein
19	 63.92	+1	25512..26456	-	314	71737239	fmt	PSPPH_0020	-	methionyl-tRNA formyltransferase
20	 55.03	0	26516..27022	-	168	71737781	def	PSPPH_0021	-	peptide deformylase
21	 59.45	0	27148..28173	+	341	71736102	-	PSPPH_0022	-	LysM domain-containing protein
22	 63.63	+1	28297..29415	+	372	71736684	smf	PSPPH_0023	-	DNA processing protein DprA
23	 62.90	+1	29454..30011	+	185	71735048	-	PSPPH_0024	-	SUA5/yciO/yrdC domain-containing protein
24	 61.25	0	30031..31008	-	325	71734550	qor1	PSPPH_0025	-	quinone oxidoreductase
25	 61.31	0	31180..32094	+	304	71735087	hemF	PSPPH_0026	-	coproporphyrinogen III oxidase
26	 61.21	0	32094..32918	+	274	71733485	aroE	PSPPH_0027	-	shikimate 5-dehydrogenase
27	 60.36	0	33015..34583	-	522	71734030	-	PSPPH_0028	-	sulfate transporter family protein
28	 56.85	0	34760..35686	-	308	71737365	-	PSPPH_0029	-	glycine betaine family ABC transporter, substrate-binding protein
29	 58.83	0	35724..37229	-	501	71734150	betC	PSPPH_0030	-	choline sulfatase
30	 61.62	0	37344..38294	+	316	71735017	-	PSPPH_0031	-	LysR family transcriptional regulator
31	 59.46	0	38331..38663	+	110	71735560	-	PSPPH_0032	-	DOPA 4,5-dioxygenase-related protein
32	 58.42	0	38877..39701	+	274	71736555	-	PSPPH_0033	-	3-oxoadipate enol-lactonase, putative
33	 63.09	+1	39886..40416	-	176	71736939	-	PSPPH_0034	-	CigR
34	 61.50	0	40542..41354	-	270	71733716	trpA	PSPPH_0035	-	tryptophan synthase subunit alpha
35	 61.54	0	41351..42580	-	409	71734425	trpB	PSPPH_0036	-	tryptophan synthase subunit beta
36	 60.51	0	42708..43616	+	302	71734854	trpI	PSPPH_0037	-	transcriptional regulator TrpI
37	 56.88	0	43617..43943	-	108	71735893	-	PSPPH_0038	-	hypothetical protein
38	 50.93	-1	44110..44325	+	71	71733667	-	PSPPH_0039	-	hypothetical protein
39	 57.58	0	44402..44698	+	98	71735499	-	PSPPH_0040	-	hypothetical protein
40	 61.18	0	44837..45838	-	333	71734768	-	PSPPH_0041	-	luciferase family protein
41	 54.40	-1	46051..46482	+	143	71736455	osmC	PSPPH_0042	-	hydroperoxide resistance protein OsmC
42	 52.14	-1	46601..46834	+	77	71737966	-	PSPPH_0043	-	hypothetical protein
43	 60.23	0	46835..47269	-	144	71737707	-	PSPPH_0044	-	putative lipoprotein
44	 56.11	0	47647..48906	+	419	71735230	-	PSPPH_0046	-	ISPsy18, transposase
45	 59.85	0	49624..50679	+	351	71734879	-	PSPPH_0048	-	hypothetical protein
46	 55.79	0	50864..52123	-	419	71733459	-	PSPPH_0049	-	ISPsy18, transposase
47	 60.99	0	52202..52747	-	181	71733495	-	PSPPH_0050	-	hexapeptide repeat-containing transferase
48	 60.73	0	52824..54911	+	695	71737956	prlC	PSPPH_0051	-	oligopeptidase A
49	 55.21	0	54908..55195	+	95	71737419	-	PSPPH_0052	-	hypothetical protein
50	 50.88	-1	55283..55510	-	75	71736882	-	PSPPH_0053	-	hypothetical protein
51	 63.19	+1	55725..57623	-	632	71735998	-	PSPPH_0054	-	lead uptake protein, putative
52	 60.35	0	57785..58417	-	210	71735157	-	PSPPH_0055	-	homoserine/homoserine lactone efflux protein
53	 61.45	0	58485..59078	-	197	71735532	-	PSPPH_0056	-	hypothetical protein
54	 62.58	+1	59095..61050	-	651	71734037	-	PSPPH_0057	-	ABC transporter, ATP-binding protein
55	 59.75	0	61052..61528	+	158	71734321	-	PSPPH_0058	-	hypothetical protein
56	 61.89	0	61525..62550	-	341	71737343	algR3	PSPPH_0059	-	alginate regulatory protein AlgR3
57	 60.06	0	62767..63447	+	226	71738172	-	PSPPH_0060	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
58	 58.23	0	63528..64001	-	157	71736232	algQ	PSPPH_0061	-	anti-RNA polymerase sigma 70 factor
59	 57.52	0	64019..64171	-	50	71735750	-	PSPPH_0062	-	hypothetical protein
60	 55.78	0	64176..64763	-	195	71734634	-	PSPPH_0063	-	DsbB family protein
61	 61.69	0	64920..66164	-	414	71733208	-	PSPPH_0064	-	hemY protein
62	 62.19	+1	66161..67300	-	379	71733874	-	PSPPH_0065	-	uroporphyrin-III C-methyltransferase, putative
63	 61.89	0	67336..68109	-	257	71737073	hemD	PSPPH_0066	-	uroporphyrinogen-III synthase
64	 61.80	0	68106..69092	-	328	71738146	hemC	PSPPH_0067	-	porphobilinogen deaminase
65	 57.58	0	69120..69218	+	32	71738113	-	PSPPH_0068	-	hypothetical protein
66	 58.90	0	69280..70026	-	248	71736034	algR	PSPPH_0069	-	alginate biosynthesis regulatory protein AlgR
67	 57.62	0	70023..71105	-	360	71736095	fimS	PSPPH_0070	-	sensor histidine kinase FimS
68	 60.72	0	71239..72633	+	464	71737743	argH	PSPPH_0071	-	argininosuccinate lyase
69	 62.56	+1	73092..74333	+	413	71737534	-	PSPPH_0072	-	hypothetical protein
70	 61.60	0	74338..75561	-	407	71734140	-	PSPPH_0073	-	hypothetical protein
71	 59.48	0	75628..77004	-	458	71736888	-	PSPPH_0074	-	M16 family peptidase
72	 60.86	0	77062..78714	-	550	71736199	-	PSPPH_0075	-	Na/Pi cotransporter family protein
73	 60.90	0	79986..81962	-	658	71735782	-	PSPPH_0076	-	methyl-accepting chemotaxis protein
74	 59.83	0	82147..83067	-	306	71737842	-	PSPPH_0077	-	LysR family transcriptional regulator
75	 62.25	+1	83223..84602	+	459	71737018	-	PSPPH_0078	-	multidrug efflux protein NorA
76	 62.76	+1	84615..86279	-	554	71736508	-	PSPPH_0079	-	GGDEF domain/EAL domain-containing protein
77	 59.20	0	86485..88494	+	669	71735974	rep	PSPPH_0080	-	ATP-dependent DNA helicase Rep
78	 58.95	0	88548..89117	+	189	71737611	xpt	PSPPH_0081	-	xanthine phosphoribosyltransferase
79	 62.06	0	89366..90688	-	440	71733945	-	PSPPH_0082	-	sigma-54 dependent transcriptional regulator
80	 59.44	0	90955..91839	+	294	71733259	-	PSPPH_0083	-	metallo-beta-lactamase family protein
81	 62.04	0	91867..93120	+	417	71735385	-	PSPPH_0084	-	pyridine nucleotide-disulfide oxidoreductase
82	 63.47	+1	93113..93925	+	270	71736726	-	PSPPH_0085	-	hypothetical protein
83	 60.45	0	94167..95147	-	326	71738121	-	PSPPH_0086	-	Sulfate/thiosulfate import ATP-binding protein cysA(Sulfate-transporting ATPase)
84	 59.34	0	95150..96022	-	290	71737465	cysW	PSPPH_0087	-	sulfate ABC transporter, permease protein CysW
85	 61.92	0	96036..96857	-	273	71736695	cysT	PSPPH_0088	-	sulfate ABC transporter, permease protein CysT
86	 56.58	0	96952..97962	-	336	71734610	sbp	PSPPH_0089	-	sulfate-binding protein
87	 54.64	0	98113..98295	-	60	71735135	-	PSPPH_0090	-	hypothetical protein
88	 59.88	0	98492..100420	-	642	71733454	-	PSPPH_0091	-	sensory box-containing diguanylate cyclase, putative
89	 58.08	0	100492..101760	+	422	71733348	-	PSPPH_0092	-	fatty acid desaturase
90	 60.99	0	101938..102888	+	316	71734073	-	PSPPH_0093	-	sensory box protein
91	 61.49	0	103160..104551	-	463	71738163	-	PSPPH_0094	-	response regulator
92	 61.05	0	104710..105990	-	426	71736250	gabT1	PSPPH_0095	-	4-aminobutyrate aminotransferase
93	 60.91	0	106198..107640	-	480	71734759	gabD	PSPPH_0096	-	succinate-semialdehyde dehydrogenase I
94	 62.24	+1	108096..109361	-	421	71735249	-	PSPPH_0097	-	pyridine nucleotide-disulfide oxidoreductase
95	 56.15	0	109724..110797	+	357	71733707	-	PSPPH_0099	-	shufflon-specific recombinase
96	 50.51	-2	111138..112709	+	523	71735375	-	PSPPH_0100	-	recombinase
97	 47.63	-2	112706..113614	+	302	71734808	-	PSPPH_0101	-	ParB family protein
98	 49.90	-2	113614..114579	+	321	71734414	-	PSPPH_0102	-	ParB-like nuclease
99	 48.21	-2	116302..116691	+	129	71737859	-	PSPPH_0103	-	hypothetical protein
100	 57.49	0	116979..119996	-	1005	71733859	-	PSPPH_0104	-	type I restriction-modification system restriction subunit
58.31	MEAN

3.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.