version 1.0
Pseudomonas fluorescens Pf0-1, complete genome - 1..6438405 5736 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 59.12 0 565..2088 + 507 77456229 dnaA Pfl01_0001 - chromosomal replication initiation protein 2 60.33 0 2128..3231 + 367 77456230 - Pfl01_0002 - DNA polymerase III subunit beta 3 59.15 0 3246..4349 + 367 77456231 recF Pfl01_0003 - recombination protein F 4 58.40 0 4355..6772 + 805 77456232 gyrB Pfl01_0004 - DNA gyrase subunit B 5 61.23 0 6835..7551 - 238 77456233 - Pfl01_0005 - two component transcriptional regulator 6 60.96 0 7716..9257 + 513 77456234 - Pfl01_0006 - periplasmic sensor Signal transduction histidine kinase 7 59.39 0 9415..10239 - 274 77456235 - Pfl01_0007 - phospholipid/glycerol acyltransferase 8 60.86 0 10277..10810 - 177 77456236 - Pfl01_0008 - D,D-heptose 1,7-bisphosphate phosphatase 9 63.65 0 10821..12875 - 684 77456237 glyS Pfl01_0009 - glycyl-tRNA synthetase subunit beta 10 62.16 0 12872..13825 - 317 77456238 glyQ Pfl01_0010 - glycyl-tRNA synthetase subunit alpha 11 59.68 0 13907..14464 + 185 77456239 - Pfl01_0011 - DNA-3-methyladenine glycosylase I 12 62.27 0 14505..15392 + 295 77456240 - Pfl01_0012 - lipid A biosynthesis lauroyl acyltransferase 13 58.73 0 15444..15758 - 104 77456241 - Pfl01_0013 - hypothetical protein 14 62.45 0 15779..17155 - 458 77456242 trkA Pfl01_0014 - potassium transporter peripheral membrane component 15 64.91 +1 17178..18488 - 436 77456243 - Pfl01_0015 - Fmu, rRNA SAM-dependent methyltransferase 16 64.69 0 18485..19444 - 319 77456244 fmt Pfl01_0016 - methionyl-tRNA formyltransferase 17 56.80 0 19501..20007 - 168 77456245 def Pfl01_0017 - peptide deformylase 18 62.48 0 20177..21202 + 341 77456246 - Pfl01_0018 - peptidoglycan-binding LysM 19 65.30 +1 21282..22382 + 366 77456247 - Pfl01_0019 - SMF protein 20 63.08 0 22437..22994 + 185 77456248 - Pfl01_0020 - SUA5/yciO/yrdC-like 21 63.91 0 23036..24013 - 325 77456249 - Pfl01_0021 - zinc-containing alcohol dehydrogenase superfamily protein 22 64.37 0 24161..25075 + 304 77456250 - Pfl01_0022 - coproporphyrinogen III oxidase 23 64.11 0 25085..25906 + 273 77456251 aroE Pfl01_0023 - shikimate 5-dehydrogenase 24 63.67 0 25913..27481 - 522 77456252 - Pfl01_0024 - sulphate transporter 25 58.50 0 27584..28501 - 305 77456253 - Pfl01_0025 - substrate-binding region of ABC-type glycine betaine transport system 26 59.75 0 28518..30050 - 510 77456254 - Pfl01_0026 - sulfatase 27 60.88 0 30147..31097 + 316 77456255 - Pfl01_0027 - LysR family transcriptional regulator 28 63.48 0 31102..31761 - 219 77456256 - Pfl01_0028 - hypothetical protein 29 62.08 0 31846..32172 + 108 77456257 - Pfl01_0029 - hypothetical protein 30 60.20 0 32173..32574 - 133 77456258 - Pfl01_0030 - glutathione-dependent formaldehyde-activating, GFA 31 61.24 0 32899..34206 + 435 77456259 - Pfl01_0031 - citrate transporter 32 58.07 0 34278..35045 + 255 77456260 - Pfl01_0032 - integral membrane protein TerC 33 55.67 -1 35160..36578 + 472 77456261 - Pfl01_0033 - IS4 family transposase 34 63.53 0 36849..38507 + 552 77456262 - Pfl01_0034 - Na/Pi cotransporter II-like 35 63.58 0 38602..39993 + 463 77456263 - Pfl01_0035 - peptidase M16-like 36 62.39 0 40070..41098 + 342 77456264 - Pfl01_0036 - hypothetical protein 37 64.75 0 41154..42302 + 382 77456265 - Pfl01_0037 - hypothetical protein 38 67.29 +1 42299..43102 + 267 77456266 - Pfl01_0038 - ABC transporter-like 39 61.87 0 43104..44042 + 312 77456267 - Pfl01_0039 - hypothetical protein 40 64.91 +1 44039..44665 + 208 77456268 - Pfl01_0040 - putative lipoprotein 41 64.55 0 44669..45898 - 409 77456269 - Pfl01_0041 - nucleoside recognition 42 59.16 0 46001..47332 - 443 77456270 gltP Pfl01_0042 - glutamate/aspartate:proton symporter 43 58.28 0 48030..48494 - 154 77456271 - Pfl01_0043 - hypothetical protein 44 54.55 -1 48497..48661 - 54 77456272 - Pfl01_0044 - hypothetical protein 45 61.40 0 48729..49013 - 94 77456273 - Pfl01_0045 - hypothetical protein 46 62.73 0 49441..50787 + 448 77456274 - Pfl01_0046 - two-component response regulator AlgB 47 61.36 0 50798..52588 + 596 77456275 - Pfl01_0047 - alginate biosynthesis sensor protein KinB 48 62.65 0 52585..54201 - 538 77456276 - Pfl01_0048 - EAL 49 61.79 0 54274..55053 - 259 77456277 - Pfl01_0049 - AmpD 50 62.98 0 55155..57245 - 696 77456278 - Pfl01_0050 - putative diguanylate cyclase 51 63.37 0 57242..58120 - 292 77456279 - Pfl01_0051 - endonuclease/exonuclease/phosphatase 52 59.81 0 58135..58776 - 213 77456280 - Pfl01_0052 - DSBA oxidoreductase 53 62.09 0 58977..59588 - 203 77456281 - Pfl01_0053 - cytochrome c, class I 54 58.97 0 59621..59893 - 90 77456282 - Pfl01_0054 - cytochrome c-type protein 55 57.98 0 60118..60762 + 214 77456283 - Pfl01_0055 - GTPase EngB 56 61.65 0 61047..63854 - 935 77456284 - Pfl01_0056 - DNA polymerase I 57 55.89 -1 63929..64225 + 98 77456285 - Pfl01_0057 - hypothetical protein 58 62.79 0 64287..65240 + 317 77456286 - Pfl01_0058 - homoserine kinase 59 61.40 0 65282..66211 - 309 77456287 - Pfl01_0059 - periplasmic solute binding protein 60 63.98 0 66269..66751 + 160 77456288 - Pfl01_0060 - zinc uptake regulation protein, putative 61 63.61 0 66751..67536 + 261 77456289 - Pfl01_0061 - ABC transporter-like 62 64.13 0 67529..68317 + 262 77456290 - Pfl01_0062 - hypothetical protein 63 61.76 0 68355..69068 + 237 77456291 - Pfl01_0063 - putative lipoprotein 64 59.80 0 69108..71249 - 713 77456292 katE Pfl01_0064 - hydroperoxidase II 65 62.70 0 71510..72517 + 335 77456293 - Pfl01_0065 - ABC transporter-like 66 60.44 0 72517..73191 + 224 77456294 - Pfl01_0066 - binding-protein dependent transport system inner membrane protein 67 59.82 0 73266..74039 + 257 77456295 - Pfl01_0067 - NLPA lipoprotein 68 54.14 -1 74089..74886 - 265 77456296 - Pfl01_0068 - integrase catalytic subunit 69 50.25 -2 74910..75311 - 133 77456297 - Pfl01_0069 - ISPsy11, transposase OrfA 70 59.91 0 75636..76271 - 211 77456298 - Pfl01_0070 - electron transport protein SCO1/SenC 71 64.87 +1 76268..77158 - 296 77456299 - Pfl01_0071 - protoheme IX farnesyltransferase 72 64.63 0 77155..78234 - 359 77456300 - Pfl01_0072 - cytochrome oxidase assembly 73 64.90 +1 78245..78811 - 188 77456301 - Pfl01_0073 - hypothetical protein 74 65.86 +1 78804..79544 - 246 77456302 - Pfl01_0074 - hypothetical protein 75 60.78 0 79617..79820 + 67 77456303 - Pfl01_0075 - hypothetical protein 76 60.25 0 79897..80784 - 295 77456304 - Pfl01_0076 - cytochrome c oxidase, subunit III 77 59.60 0 80810..81361 - 183 77456305 - Pfl01_0077 - cytochrome C oxidase assembly protein 78 62.21 0 81389..82981 - 530 77456306 - Pfl01_0078 - cytochrome-c oxidase 79 60.46 0 83064..84191 - 375 77456307 - Pfl01_0079 - cytochrome c oxidase, subunit II 80 58.93 0 84561..85193 + 210 77456308 - Pfl01_0080 - hypothetical protein 81 64.05 0 85244..86770 - 508 77456309 - Pfl01_0081 - sulphate transporter 82 59.56 0 86861..87592 - 243 77456310 - Pfl01_0082 - carbonic anhydrase 83 63.17 0 87830..88888 - 352 77456311 - Pfl01_0083 - radical SAM family protein 84 63.06 0 88963..90264 - 433 77456312 - Pfl01_0084 - cytochrome c, class I 85 61.34 0 90277..92061 - 594 77456313 - Pfl01_0085 - glucose-methanol-choline oxidoreductase 86 60.37 0 92064..92810 - 248 77456314 - Pfl01_0086 - hypothetical protein 87 60.16 0 93107..93751 + 214 77456315 - Pfl01_0087 - protein tyrosine/serine phosphatase 88 61.28 0 93738..95780 - 680 77456316 - Pfl01_0088 - oligopeptidase A 89 60.82 0 95893..96183 - 96 77456317 - Pfl01_0089 - hypothetical protein 90 62.77 0 96180..98258 - 692 77456318 - Pfl01_0090 - oligopeptidase A 91 63.37 0 98321..98866 + 181 77456319 - Pfl01_0091 - hexapaptide repeat-containing transferase 92 59.60 0 98895..99545 + 216 77456320 - Pfl01_0092 - HAD family hydrolase 93 59.86 0 99549..100679 - 376 77456321 - Pfl01_0093 - hypothetical protein 94 60.52 0 100692..101114 + 140 77456322 - Pfl01_0094 - putative lipoprotein 95 62.86 0 101155..101574 + 139 77456323 - Pfl01_0095 - putative lipoprotein 96 54.17 -1 101581..101820 - 79 77456324 - Pfl01_0096 - hypothetical protein 97 58.33 0 101933..102364 - 143 77456325 - Pfl01_0097 - OsmC-like protein 98 63.97 0 102608..103609 + 333 77456326 - Pfl01_0098 - luciferase-like 99 57.33 0 103672..103896 - 74 77456327 - Pfl01_0099 - hypothetical protein 100 55.56 -1 104025..104240 - 71 77456328 - Pfl01_0100 - hypothetical protein 60.63 MEAN 4.15 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.