IslandPathversion 1.0

IslandPath Analysis: Pseudomonas fluorescens Pf0-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.63 STD DEV: 4.15
Pseudomonas fluorescens Pf0-1, complete genome - 1..6438405
5736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 59.12	0	565..2088	+	507	77456229	dnaA	Pfl01_0001	-	chromosomal replication initiation protein
2	 60.33	0	2128..3231	+	367	77456230	-	Pfl01_0002	-	DNA polymerase III subunit beta
3	 59.15	0	3246..4349	+	367	77456231	recF	Pfl01_0003	-	recombination protein F
4	 58.40	0	4355..6772	+	805	77456232	gyrB	Pfl01_0004	-	DNA gyrase subunit B
5	 61.23	0	6835..7551	-	238	77456233	-	Pfl01_0005	-	two component transcriptional regulator
6	 60.96	0	7716..9257	+	513	77456234	-	Pfl01_0006	-	periplasmic sensor Signal transduction histidine kinase
7	 59.39	0	9415..10239	-	274	77456235	-	Pfl01_0007	-	phospholipid/glycerol acyltransferase
8	 60.86	0	10277..10810	-	177	77456236	-	Pfl01_0008	-	D,D-heptose 1,7-bisphosphate phosphatase
9	 63.65	0	10821..12875	-	684	77456237	glyS	Pfl01_0009	-	glycyl-tRNA synthetase subunit beta
10	 62.16	0	12872..13825	-	317	77456238	glyQ	Pfl01_0010	-	glycyl-tRNA synthetase subunit alpha
11	 59.68	0	13907..14464	+	185	77456239	-	Pfl01_0011	-	DNA-3-methyladenine glycosylase I
12	 62.27	0	14505..15392	+	295	77456240	-	Pfl01_0012	-	lipid A biosynthesis lauroyl acyltransferase
13	 58.73	0	15444..15758	-	104	77456241	-	Pfl01_0013	-	hypothetical protein
14	 62.45	0	15779..17155	-	458	77456242	trkA	Pfl01_0014	-	potassium transporter peripheral membrane component
15	 64.91	+1	17178..18488	-	436	77456243	-	Pfl01_0015	-	Fmu, rRNA SAM-dependent methyltransferase
16	 64.69	0	18485..19444	-	319	77456244	fmt	Pfl01_0016	-	methionyl-tRNA formyltransferase
17	 56.80	0	19501..20007	-	168	77456245	def	Pfl01_0017	-	peptide deformylase
18	 62.48	0	20177..21202	+	341	77456246	-	Pfl01_0018	-	peptidoglycan-binding LysM
19	 65.30	+1	21282..22382	+	366	77456247	-	Pfl01_0019	-	SMF protein
20	 63.08	0	22437..22994	+	185	77456248	-	Pfl01_0020	-	SUA5/yciO/yrdC-like
21	 63.91	0	23036..24013	-	325	77456249	-	Pfl01_0021	-	zinc-containing alcohol dehydrogenase superfamily protein
22	 64.37	0	24161..25075	+	304	77456250	-	Pfl01_0022	-	coproporphyrinogen III oxidase
23	 64.11	0	25085..25906	+	273	77456251	aroE	Pfl01_0023	-	shikimate 5-dehydrogenase
24	 63.67	0	25913..27481	-	522	77456252	-	Pfl01_0024	-	sulphate transporter
25	 58.50	0	27584..28501	-	305	77456253	-	Pfl01_0025	-	substrate-binding region of ABC-type glycine betaine transport system
26	 59.75	0	28518..30050	-	510	77456254	-	Pfl01_0026	-	sulfatase
27	 60.88	0	30147..31097	+	316	77456255	-	Pfl01_0027	-	LysR family transcriptional regulator
28	 63.48	0	31102..31761	-	219	77456256	-	Pfl01_0028	-	hypothetical protein
29	 62.08	0	31846..32172	+	108	77456257	-	Pfl01_0029	-	hypothetical protein
30	 60.20	0	32173..32574	-	133	77456258	-	Pfl01_0030	-	glutathione-dependent formaldehyde-activating, GFA
31	 61.24	0	32899..34206	+	435	77456259	-	Pfl01_0031	-	citrate transporter
32	 58.07	0	34278..35045	+	255	77456260	-	Pfl01_0032	-	integral membrane protein TerC
33	 55.67	-1	35160..36578	+	472	77456261	-	Pfl01_0033	-	IS4 family transposase
34	 63.53	0	36849..38507	+	552	77456262	-	Pfl01_0034	-	Na/Pi cotransporter II-like
35	 63.58	0	38602..39993	+	463	77456263	-	Pfl01_0035	-	peptidase M16-like
36	 62.39	0	40070..41098	+	342	77456264	-	Pfl01_0036	-	hypothetical protein
37	 64.75	0	41154..42302	+	382	77456265	-	Pfl01_0037	-	hypothetical protein
38	 67.29	+1	42299..43102	+	267	77456266	-	Pfl01_0038	-	ABC transporter-like
39	 61.87	0	43104..44042	+	312	77456267	-	Pfl01_0039	-	hypothetical protein
40	 64.91	+1	44039..44665	+	208	77456268	-	Pfl01_0040	-	putative lipoprotein
41	 64.55	0	44669..45898	-	409	77456269	-	Pfl01_0041	-	nucleoside recognition
42	 59.16	0	46001..47332	-	443	77456270	gltP	Pfl01_0042	-	glutamate/aspartate:proton symporter
43	 58.28	0	48030..48494	-	154	77456271	-	Pfl01_0043	-	hypothetical protein
44	 54.55	-1	48497..48661	-	54	77456272	-	Pfl01_0044	-	hypothetical protein
45	 61.40	0	48729..49013	-	94	77456273	-	Pfl01_0045	-	hypothetical protein
46	 62.73	0	49441..50787	+	448	77456274	-	Pfl01_0046	-	two-component response regulator AlgB
47	 61.36	0	50798..52588	+	596	77456275	-	Pfl01_0047	-	alginate biosynthesis sensor protein KinB
48	 62.65	0	52585..54201	-	538	77456276	-	Pfl01_0048	-	EAL
49	 61.79	0	54274..55053	-	259	77456277	-	Pfl01_0049	-	AmpD
50	 62.98	0	55155..57245	-	696	77456278	-	Pfl01_0050	-	putative diguanylate cyclase
51	 63.37	0	57242..58120	-	292	77456279	-	Pfl01_0051	-	endonuclease/exonuclease/phosphatase
52	 59.81	0	58135..58776	-	213	77456280	-	Pfl01_0052	-	DSBA oxidoreductase
53	 62.09	0	58977..59588	-	203	77456281	-	Pfl01_0053	-	cytochrome c, class I
54	 58.97	0	59621..59893	-	90	77456282	-	Pfl01_0054	-	cytochrome c-type protein
55	 57.98	0	60118..60762	+	214	77456283	-	Pfl01_0055	-	GTPase EngB
56	 61.65	0	61047..63854	-	935	77456284	-	Pfl01_0056	-	DNA polymerase I
57	 55.89	-1	63929..64225	+	98	77456285	-	Pfl01_0057	-	hypothetical protein
58	 62.79	0	64287..65240	+	317	77456286	-	Pfl01_0058	-	homoserine kinase
59	 61.40	0	65282..66211	-	309	77456287	-	Pfl01_0059	-	periplasmic solute binding protein
60	 63.98	0	66269..66751	+	160	77456288	-	Pfl01_0060	-	zinc uptake regulation protein, putative
61	 63.61	0	66751..67536	+	261	77456289	-	Pfl01_0061	-	ABC transporter-like
62	 64.13	0	67529..68317	+	262	77456290	-	Pfl01_0062	-	hypothetical protein
63	 61.76	0	68355..69068	+	237	77456291	-	Pfl01_0063	-	putative lipoprotein
64	 59.80	0	69108..71249	-	713	77456292	katE	Pfl01_0064	-	hydroperoxidase II
65	 62.70	0	71510..72517	+	335	77456293	-	Pfl01_0065	-	ABC transporter-like
66	 60.44	0	72517..73191	+	224	77456294	-	Pfl01_0066	-	binding-protein dependent transport system inner membrane protein
67	 59.82	0	73266..74039	+	257	77456295	-	Pfl01_0067	-	NLPA lipoprotein
68	 54.14	-1	74089..74886	-	265	77456296	-	Pfl01_0068	-	integrase catalytic subunit
69	 50.25	-2	74910..75311	-	133	77456297	-	Pfl01_0069	-	ISPsy11, transposase OrfA
70	 59.91	0	75636..76271	-	211	77456298	-	Pfl01_0070	-	electron transport protein SCO1/SenC
71	 64.87	+1	76268..77158	-	296	77456299	-	Pfl01_0071	-	protoheme IX farnesyltransferase
72	 64.63	0	77155..78234	-	359	77456300	-	Pfl01_0072	-	cytochrome oxidase assembly
73	 64.90	+1	78245..78811	-	188	77456301	-	Pfl01_0073	-	hypothetical protein
74	 65.86	+1	78804..79544	-	246	77456302	-	Pfl01_0074	-	hypothetical protein
75	 60.78	0	79617..79820	+	67	77456303	-	Pfl01_0075	-	hypothetical protein
76	 60.25	0	79897..80784	-	295	77456304	-	Pfl01_0076	-	cytochrome c oxidase, subunit III
77	 59.60	0	80810..81361	-	183	77456305	-	Pfl01_0077	-	cytochrome C oxidase assembly protein
78	 62.21	0	81389..82981	-	530	77456306	-	Pfl01_0078	-	cytochrome-c oxidase
79	 60.46	0	83064..84191	-	375	77456307	-	Pfl01_0079	-	cytochrome c oxidase, subunit II
80	 58.93	0	84561..85193	+	210	77456308	-	Pfl01_0080	-	hypothetical protein
81	 64.05	0	85244..86770	-	508	77456309	-	Pfl01_0081	-	sulphate transporter
82	 59.56	0	86861..87592	-	243	77456310	-	Pfl01_0082	-	carbonic anhydrase
83	 63.17	0	87830..88888	-	352	77456311	-	Pfl01_0083	-	radical SAM family protein
84	 63.06	0	88963..90264	-	433	77456312	-	Pfl01_0084	-	cytochrome c, class I
85	 61.34	0	90277..92061	-	594	77456313	-	Pfl01_0085	-	glucose-methanol-choline oxidoreductase
86	 60.37	0	92064..92810	-	248	77456314	-	Pfl01_0086	-	hypothetical protein
87	 60.16	0	93107..93751	+	214	77456315	-	Pfl01_0087	-	protein tyrosine/serine phosphatase
88	 61.28	0	93738..95780	-	680	77456316	-	Pfl01_0088	-	oligopeptidase A
89	 60.82	0	95893..96183	-	96	77456317	-	Pfl01_0089	-	hypothetical protein
90	 62.77	0	96180..98258	-	692	77456318	-	Pfl01_0090	-	oligopeptidase A
91	 63.37	0	98321..98866	+	181	77456319	-	Pfl01_0091	-	hexapaptide repeat-containing transferase
92	 59.60	0	98895..99545	+	216	77456320	-	Pfl01_0092	-	HAD family hydrolase
93	 59.86	0	99549..100679	-	376	77456321	-	Pfl01_0093	-	hypothetical protein
94	 60.52	0	100692..101114	+	140	77456322	-	Pfl01_0094	-	putative lipoprotein
95	 62.86	0	101155..101574	+	139	77456323	-	Pfl01_0095	-	putative lipoprotein
96	 54.17	-1	101581..101820	-	79	77456324	-	Pfl01_0096	-	hypothetical protein
97	 58.33	0	101933..102364	-	143	77456325	-	Pfl01_0097	-	OsmC-like protein
98	 63.97	0	102608..103609	+	333	77456326	-	Pfl01_0098	-	luciferase-like
99	 57.33	0	103672..103896	-	74	77456327	-	Pfl01_0099	-	hypothetical protein
100	 55.56	-1	104025..104240	-	71	77456328	-	Pfl01_0100	-	hypothetical protein
60.63	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.