IslandPath Analysis: Pseudomonas fluorescens Pf-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.52   STD DEV: 4.07
Pseudomonas fluorescens Pf-5, complete genome - 1..7074893
6138 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.44	0	101..1642	+	513	70733514	dnaA	PFL_0001	-	chromosomal replication initiation protein
2	 61.87	0	1681..2784	+	367	70733515	dnaN	PFL_0002	-	DNA polymerase III subunit beta
3	 61.87	0	2805..3908	+	367	70733516	recF	PFL_0003	-	recombination protein F
4	 59.02	-1	3913..6330	+	805	70733517	gyrB	PFL_0004	-	DNA gyrase subunit B
5	 59.62	0	6669..7193	+	174	70733518	-	PFL_0005	-	hypothetical protein
6	 57.20	-1	7345..7830	+	161	70733519	-	PFL_0006	-	hypothetical protein
7	 59.23	-1	7812..8147	+	111	70733520	-	PFL_0007	-	hypothetical protein
8	 63.92	0	8175..8903	-	242	70733521	-	PFL_0008	-	DNA-binding response regulator
9	 63.16	0	9819..10817	+	332	70733522	-	PFL_0009	-	hypothetical protein
10	 66.75	0	10836..13154	+	772	70733523	-	PFL_0010	-	CHASE domain-containing protein/sensory box histidine kinase
11	 61.09	0	13335..14105	-	256	70733524	-	PFL_0011	-	acylhomoserine lactone synthase HdtS, putative
12	 60.30	0	14189..14722	-	177	70733525	-	PFL_0012	-	D,D-heptose 1,7-bisphosphate phosphatase
13	 65.60	0	14740..16794	-	684	70733526	glyS	PFL_0013	-	glycyl-tRNA synthetase subunit beta
14	 61.43	0	16791..17744	-	317	70733527	glyQ	PFL_0014	-	glycyl-tRNA synthetase subunit alpha
15	 62.59	0	17826..18389	+	187	70733528	tag	PFL_0015	-	DNA-3-methyladenine glycosylase I
16	 64.30	0	18432..19319	+	295	70733529	-	PFL_0016	-	lipid A biosynthesis lauroyl acyltransferase
17	 65.42	0	19392..19631	+	79	70733530	-	PFL_0017	-	hypothetical protein
18	 63.52	0	19803..20120	-	105	70733531	-	PFL_0018	-	TPR domain-containing protein
19	 65.72	0	20245..21618	-	457	70733532	trkA	PFL_0019	-	potassium transporter peripheral membrane component
20	 68.10	+1	21641..22966	-	441	70733533	sun	PFL_0020	-	sun protein
21	 67.40	0	22963..23922	-	319	70733534	fmt	PFL_0021	-	methionyl-tRNA formyltransferase
22	 58.58	-1	23992..24498	-	168	161501956	def	PFL_0022	-	peptide deformylase
23	 68.36	+1	24601..25662	+	353	70733536	-	PFL_0023	-	LysM domain-containing protein
24	 68.95	+1	25762..26856	+	364	70733537	dprA	PFL_0024	-	smf protein
25	 64.16	0	26911..27468	+	185	70733538	-	PFL_0025	-	Sua5/YciO/YrdC/YwlC family protein
26	 66.26	0	27533..28510	-	325	70733539	qor	PFL_0026	-	quinone oxidoreductase
27	 64.81	0	28678..29595	+	305	70733540	hemF	PFL_0027	-	coproporphyrinogen III oxidase
28	 67.52	0	29689..30510	+	273	70733541	aroE	PFL_0028	-	shikimate 5-dehydrogenase
29	 67.24	0	30626..32194	-	522	70733542	-	PFL_0029	-	sulfate transporter family protein
30	 61.33	0	32295..33212	-	305	70733543	-	PFL_0030	-	glycine betaine family ABC transporter, substrate-binding protein
31	 65.21	0	33230..34744	-	504	70733544	betC	PFL_0031	-	choline-sulfatase
32	 66.56	0	34859..35809	+	316	70733545	-	PFL_0032	-	LysR family transcriptional regulator
33	 67.91	+1	35806..36450	-	214	70733546	-	PFL_0033	-	hypothetical protein
34	 65.75	0	36554..36880	+	108	70733547	-	PFL_0034	-	hypothetical protein
35	 69.59	+1	36936..37379	-	147	70733548	-	PFL_0035	-	hypothetical protein
36	 67.04	0	37501..38313	-	270	70733549	trpA	PFL_0036	-	tryptophan synthase subunit alpha
37	 64.62	0	38313..39533	-	406	70733550	trpB	PFL_0037	-	tryptophan synthase subunit beta
38	 68.12	+1	39681..40574	+	297	70733551	trpI	PFL_0038	-	transcriptional regulator TrpI
39	 60.24	0	40571..40897	-	108	70733552	-	PFL_0039	-	hypothetical protein
40	 52.78	-2	41056..41271	+	71	70733553	-	PFL_0040	-	hypothetical protein
41	 57.78	-1	41406..41630	+	74	70733554	-	PFL_0041	-	hypothetical protein
42	 64.57	0	41691..42692	-	333	70733555	-	PFL_0042	-	luciferase family protein
43	 61.11	0	42933..43364	+	143	70733556	osmC	PFL_0043	-	hydroperoxide resistance protein OsmC
44	 57.26	-1	43521..43754	+	77	70733557	-	PFL_0044	-	hypothetical protein
45	 65.95	0	43761..44180	-	139	70733558	-	PFL_0045	-	putative lipoprotein
46	 66.67	0	44223..44636	-	137	70733559	-	PFL_0046	-	putative lipoprotein
47	 64.68	0	44696..45805	+	369	70733560	-	PFL_0047	-	hypothetical protein
48	 62.52	0	45834..46484	-	216	70733561	-	PFL_0048	-	HAD family hydrolase
49	 66.12	0	46513..47058	-	181	70733562	-	PFL_0049	-	carbonic anhydrase
50	 64.89	0	47134..49212	+	692	70733563	prlC	PFL_0050	-	oligopeptidase A
51	 58.78	-1	49209..49487	+	92	70733564	-	PFL_0051	-	hypothetical protein
52	 63.24	0	49607..50278	-	223	70733565	-	PFL_0052	-	hypothetical protein
53	 63.10	0	50560..51315	+	251	70733566	-	PFL_0053	-	hypothetical protein
54	 62.97	0	51318..53102	+	594	70733567	-	PFL_0054	-	gluconate dehydrogenase, putative
55	 66.74	0	53115..54419	+	434	70733568	-	PFL_0055	-	cytochrome c family protein
56	 65.55	0	54465..54821	-	118	70733569	-	PFL_0056	-	hypothetical protein
57	 65.34	0	55021..56079	+	352	70733570	-	PFL_0057	-	radical SAM domain-containing protein
58	 62.03	0	56347..57057	+	236	70733571	-	PFL_0058	-	carbonic anhydrase
59	 67.90	+1	57149..58684	+	511	70733572	-	PFL_0059	-	sulfate transporter family protein
60	 59.78	0	58930..59466	+	178	70734360	-	PFL_0060	-	hypothetical protein
61	 63.12	0	59792..60919	+	375	70733573	-	PFL_0061	-	cytochrome c oxidase, subunit II
62	 62.09	0	61002..62597	+	531	70733574	-	PFL_0062	-	cytochrome c oxidase, subunit I
63	 60.75	0	62697..63254	+	185	70733575	-	PFL_0063	-	cytochrome C oxidase assembly protein
64	 62.16	0	63288..64175	+	295	70733576	-	PFL_0064	-	cytochrome c oxidase, subunit III
65	 61.67	0	64182..64361	-	59	70733577	-	PFL_0065	-	hypothetical protein
66	 66.20	0	64348..65196	+	282	70733578	-	PFL_0066	-	hypothetical protein
67	 64.87	0	65252..65752	+	166	70733579	-	PFL_0067	-	hypothetical protein
68	 67.59	+1	65763..66842	+	359	70733580	-	PFL_0068	-	cytochrome oxidase assembly protein
69	 64.78	0	66830..67732	+	300	70733581	-	PFL_0069	-	protoheme IX farnesyltransferase
70	 61.01	0	67729..68364	+	211	70733582	-	PFL_0070	-	Sco1/SenC family protein
71	 60.59	0	68548..69321	-	257	70733584	-	PFL_0071	-	D-methionine-binding lipoprotein MetQ
72	 63.06	0	69381..70046	-	221	70733583	-	PFL_0072	-	ABC transporter permease
73	 66.87	0	70046..71053	-	335	70733585	-	PFL_0073	-	D-methionine ABC transporter, ATP-binding protein
74	 62.51	0	71323..73461	+	712	70733586	katE	PFL_0074	-	hydroperoxidase II
75	 64.17	0	73518..74237	-	239	70733587	-	PFL_0075	-	putative lipoprotein
76	 66.79	0	74275..75063	-	262	70733588	psaC	PFL_0076	-	zinc ABC transporter, permease protein
77	 66.28	0	75056..75841	-	261	70733589	-	PFL_0077	-	zinc ABC transporter, ATP-binding protein
78	 67.29	0	75841..76323	-	160	70733590	-	PFL_0078	-	FUR family transcriptional regulator
79	 65.91	0	76381..77310	+	309	70733591	-	PFL_0079	-	zinc ABC transporter, periplasmic zinc-binding protein
80	 65.40	0	77402..78352	-	316	70733592	thrB	PFL_0080	-	homoserine kinase
81	 55.56	-1	78418..78705	-	95	70733593	-	PFL_0081	-	hypothetical protein
82	 63.19	0	78780..81569	+	929	70733594	polA	PFL_0082	-	DNA polymerase I
83	 59.98	0	81985..82791	-	268	70733595	-	PFL_0083	-	GTPase EngB
84	 60.89	0	83154..83759	+	201	70733596	-	PFL_0084	-	cytochrome c4
85	 58.41	-1	83957..84586	+	209	70733597	-	PFL_0085	-	DsbA family thiol:disulfide interchange protein
86	 63.82	0	84599..85477	+	292	70733598	-	PFL_0086	-	endonuclease/exonuclease/phosphatase family protein
87	 66.48	0	85474..87657	+	727	70733599	-	PFL_0087	-	diguanylate cyclase, putative
88	 63.72	0	87759..88538	+	259	70733600	-	PFL_0088	-	N-acetylmuramoyl-L-alanine amidase
89	 66.67	0	88615..90234	+	539	70733601	-	PFL_0089	-	EAL domain-containing protein
90	 65.38	0	90239..92023	-	594	70733602	kinB	PFL_0090	-	alginate biosynthesis sensor protein KinB
91	 65.03	0	92034..93380	-	448	70733603	algB	PFL_0091	-	alginate biosynthesis transcriptional regulatory protein AlgB
92	 62.81	0	93822..94106	+	94	70733604	-	PFL_0092	-	hypothetical protein
93	 55.76	-1	94188..94352	+	54	70733605	-	PFL_0093	-	hypothetical protein
94	 62.06	0	94367..94822	+	151	70733606	-	PFL_0094	-	hypothetical protein
95	 60.21	0	95568..96899	+	443	70733607	gltP	PFL_0095	-	glutamate/aspartate:proton symporter
96	 66.42	0	97076..98305	+	409	70733608	-	PFL_0096	-	nucleoside transporter
97	 67.78	+1	98378..99007	-	209	70733609	-	PFL_0097	-	putative lipoprotein
98	 64.86	0	99004..99942	-	312	70733610	-	PFL_0098	-	MCE-like family protein
99	 67.41	0	99944..100747	-	267	70733611	-	PFL_0099	-	ABC transporter, ATP-binding protein
100	 65.80	0	100744..101892	-	382	70733612	-	PFL_0100	-	ABC transporter, permease protein, putative
63.52	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.