IslandPath Analysis: Pseudomonas aeruginosa PAO1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.74   STD DEV: 3.97
Pseudomonas aeruginosa PAO1, complete genome - 1..6264404
5566 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.52	-1	483..2027	+	514	15595199	dnaA	PA0001	-	chromosomal replication initiation protein
2	 61.96	-1	2056..3159	+	367	15595200	dnaN	PA0002	-	DNA polymerase III subunit beta
3	 61.62	-1	3169..4278	+	369	15595201	recF	PA0003	-	recombination protein F
4	 62.41	-1	4275..6695	+	806	15595202	gyrB	PA0004	-	DNA gyrase subunit B
5	 66.28	0	7018..7791	-	257	15595203	lptA	PA0005	-	lysophosphatidic acid acyltransferase, LptA
6	 63.31	0	7803..8339	-	178	15595204	-	PA0006	-	D,D-heptose 1,7-bisphosphate phosphatase
7	 66.55	0	8671..10377	+	568	15595205	-	PA0007	-	hypothetical protein
8	 67.06	0	10434..12488	-	684	15595206	glyS	PA0008	-	glycyl-tRNA synthetase subunit beta
9	 64.66	0	12488..13435	-	315	15595207	glyQ	PA0009	-	glycyl-tRNA synthetase subunit alpha
10	 64.86	0	13540..14091	+	183	15595208	tag	PA0010	-	DNA-3-methyladenine glycosidase I
11	 58.78	-2	14235..15122	+	295	15595209	-	PA0011	-	lipid A biosynthesis lauroyl acyltransferase
12	 58.80	-1	15207..15473	+	88	15595210	-	PA0012	-	hypothetical protein
13	 62.23	-1	15620..16273	+	217	15595211	-	PA0013	-	hypothetical protein
14	 62.27	-1	16335..16607	-	90	15595212	-	PA0014	-	hypothetical protein
15	 66.67	0	16900..17217	-	105	15595213	-	PA0015	-	hypothetical protein
16	 65.79	0	17366..18739	-	457	15595214	trkA	PA0016	-	potassium transporter peripheral membrane component
17	 70.73	+1	18767..20071	-	434	15595215	-	PA0017	-	hypothetical protein
18	 71.11	+1	20068..21012	-	314	15595216	fmt	PA0018	-	methionyl-tRNA formyltransferase
19	 61.54	-1	21067..21573	-	168	15595217	def	PA0019	-	peptide deformylase
20	 65.59	0	21712..22737	+	341	15595218	-	PA0020	-	hypothetical protein
21	 73.00	+1	22872..23960	+	362	15595219	-	PA0021	-	hypothetical protein
22	 70.07	0	24001..24558	+	185	15595220	-	PA0022	-	hypothetical protein
23	 67.48	0	24568..25545	-	325	15595221	qor	PA0023	-	quinone oxidoreductase
24	 66.78	0	25736..26653	+	305	15595222	hemF	PA0024	-	coproporphyrinogen III oxidase
25	 69.70	0	26711..27535	+	274	15595223	aroE	PA0025	-	shikimate 5-dehydrogenase
26	 66.87	0	27646..28632	+	328	15595224	plcB	PA0026	-	phospholipase C, PlcB
27	 69.54	0	28613..29899	+	428	15595225	-	PA0027	-	hypothetical protein
28	 71.48	+1	29896..30498	+	200	15595226	-	PA0028	-	hypothetical protein
29	 70.40	0	30502..32055	-	517	15595227	-	PA0029	-	putative sulfate transporter
30	 69.16	0	32060..32983	-	307	15595228	-	PA0030	-	hypothetical protein
31	 68.19	0	33000..34511	-	503	15595229	betC	PA0031	-	choline sulfatase
32	 68.63	0	34624..35538	+	304	15595230	-	PA0032	-	putative transcriptional regulator
33	 67.49	0	35905..36270	-	121	15595231	-	PA0033	-	hypothetical protein
34	 62.82	0	36278..36901	-	207	15595232	-	PA0034	-	putative two-component response regulator
35	 69.39	0	37087..37893	-	268	15595233	trpA	PA0035	-	tryptophan synthase subunit alpha
36	 67.08	0	37890..39098	-	402	15595234	trpB	PA0036	-	tryptophan synthase subunit beta
37	 72.64	+1	39202..40089	+	295	15595235	trpI	PA0037	-	transcriptional regulator TrpI
38	 57.87	-2	40190..40405	+	71	15595236	-	PA0038	-	hypothetical protein
39	 59.65	-1	40589..40816	+	75	15595237	-	PA0039	-	hypothetical protein
40	 69.98	0	41113..42801	+	562	15595238	-	PA0040	-	hypothetical protein
41	 68.57	0	42914..53521	+	3535	15595239	-	PA0041	-	hemagglutinin
42	 62.63	-1	56546..56941	+	131	15595240	-	PA0042	-	hypothetical protein
43	 69.92	0	57212..58594	-	460	15595241	-	PA0043	-	hypothetical protein
44	 67.32	0	58786..60159	+	457	15595242	exoT	PA0044	-	exoenzyme T
45	 64.34	0	60656..61342	+	228	15595243	-	PA0045	-	hypothetical protein
46	 64.97	0	61373..61726	+	117	15595244	-	PA0046	-	hypothetical protein
47	 69.02	0	61879..62388	+	169	15595245	-	PA0047	-	hypothetical protein
48	 68.75	0	62403..62786	-	127	15595246	-	PA0048	-	putative transcriptional regulator
49	 71.24	+1	63068..64729	-	553	15595247	-	PA0049	-	hypothetical protein
50	 68.79	0	65339..65479	+	46	15595248	-	PA0050	-	hypothetical protein
51	 66.94	0	66303..68135	+	610	15595249	phzH	PA0051	-	potential phenazine-modifying enzyme
52	 69.70	0	68188..68616	-	142	15595250	-	PA0052	-	hypothetical protein
53	 59.22	-1	69272..69526	+	84	15595251	-	PA0053	-	hypothetical protein
54	 70.67	0	69543..70091	-	182	15595252	-	PA0054	-	RNA 2'-phosphotransferase-like protein
55	 66.27	0	70130..70636	-	168	15595253	-	PA0055	-	hypothetical protein
56	 72.64	+1	70702..71622	-	306	15595254	-	PA0056	-	putative transcriptional regulator
57	 68.24	0	71730..72617	+	295	15595255	-	PA0057	-	hypothetical protein
58	 72.34	+1	72680..73384	+	234	15595256	-	PA0058	-	hypothetical protein
59	 65.79	0	73468..73923	+	151	15595257	osmC	PA0059	-	osmotically inducible protein OsmC
60	 60.68	-1	74034..74267	+	77	15595258	-	PA0060	-	hypothetical protein
61	 71.00	+1	74279..74716	-	145	15595259	-	PA0061	-	hypothetical protein
62	 68.35	0	74773..75189	-	138	15595260	-	PA0062	-	hypothetical protein
63	 69.95	0	75281..76408	+	375	15595261	-	PA0063	-	hypothetical protein
64	 69.72	0	76416..77399	-	327	15595262	-	PA0064	-	hypothetical protein
65	 67.42	0	77432..78097	-	221	15595263	-	PA0065	-	hypothetical protein
66	 66.85	0	78090..78632	-	180	15595264	-	PA0066	-	hypothetical protein
67	 67.99	0	78710..80755	+	681	15595265	prlC	PA0067	-	oligopeptidase A
68	 65.94	0	80752..81027	+	91	15595266	-	PA0068	-	hypothetical protein
69	 69.12	0	81116..82174	+	352	15595267	-	PA0069	-	hypothetical protein
70	 67.98	0	82404..83318	-	304	15595268	-	PA0070	-	hypothetical protein
71	 66.67	0	83380..85092	-	570	15595269	-	PA0071	-	hypothetical protein
72	 73.58	+1	85085..86284	-	399	15595270	-	PA0072	-	hypothetical protein
73	 74.31	+1	86284..87003	-	239	15595271	-	PA0073	-	ABC transporter ATP-binding protein
74	 70.57	0	87000..90098	-	1032	15595272	ppkA	PA0074	-	serine/threonine protein kinase PpkA
75	 69.68	0	90106..90834	-	242	15595273	-	PA0075	-	putative phosphoprotein phosphatase
76	 71.81	+1	90844..91524	-	226	15595274	-	PA0076	-	hypothetical protein
77	 69.78	0	91521..94826	-	1101	15595275	-	PA0077	-	hypothetical protein
78	 72.22	+1	95048..96397	-	449	15595276	-	PA0078	-	hypothetical protein
79	 70.26	0	96404..97738	-	444	15595277	-	PA0079	-	hypothetical protein
80	 70.97	+1	97754..98218	-	154	15595278	-	PA0080	-	hypothetical protein
81	 71.02	+1	98263..99756	-	497	15595279	-	PA0081	-	hypothetical protein
82	 70.14	0	100124..101158	+	344	15595280	-	PA0082	-	hypothetical protein
83	 64.55	0	101247..101765	+	172	15595281	-	PA0083	-	hypothetical protein
84	 64.60	0	101778..103274	+	498	15595282	-	PA0084	-	hypothetical protein
85	 62.58	-1	103350..103838	+	162	15595283	-	PA0085	-	hypothetical protein
86	 70.09	0	104006..104851	+	281	15595284	-	PA0086	-	hypothetical protein
87	 69.80	0	104853..105362	+	169	15595285	-	PA0087	-	hypothetical protein
88	 69.62	0	105359..107218	+	619	15595286	-	PA0088	-	hypothetical protein
89	 70.30	0	107182..108228	+	348	15595287	-	PA0089	-	hypothetical protein
90	 68.40	0	108221..110929	+	902	15595288	-	PA0090	-	ClpA/B-type chaperone
91	 67.13	0	110976..112907	+	643	15595289	-	PA0091	-	hypothetical protein
92	 62.11	-1	113022..113306	-	94	15595290	-	PA0092	-	hypothetical protein
93	 67.36	0	113303..114595	-	430	15595291	-	PA0093	-	hypothetical protein
94	 66.90	0	114611..115045	-	144	15595292	-	PA0094	-	hypothetical protein
95	 65.81	0	115299..117524	+	741	15595293	-	PA0095	-	hypothetical protein
96	 69.56	0	117552..118001	+	149	15595294	-	PA0096	-	hypothetical protein
97	 70.08	0	117931..119130	+	399	15595295	-	PA0097	-	hypothetical protein
98	 71.39	+1	119127..120164	+	345	15595296	-	PA0098	-	3-oxoacyl-(acyl carrier protein) synthase
99	 60.98	-1	120164..121324	+	386	15595297	-	PA0099	-	hypothetical protein
100	 62.54	-1	121346..122266	+	306	15595298	-	PA0100	-	hypothetical protein
66.74	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.