IslandPath Analysis: Bacillus licheniformis ATCC 14580



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.17   STD DEV: 4.53
Bacillus licheniformis ATCC 14580, complete genome - 1..4222645
4196 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 43.18	0	311..1651	+	446	52783856	dnaA	BLi00001	-	chromosomal replication initiation protein
2	 44.59	0	1828..2964	+	378	52783857	dnaN	BLi00002	-	DNA polymerase III subunit beta
3	 46.30	0	3132..3347	+	71	52783858	yaaA	BLi00003	-	YaaA
4	 42.77	0	3364..4476	+	370	52783859	recF	BLi00004	-	recombination protein F
5	 41.15	-1	4494..4736	+	80	52783860	yaaB	BLi00005	-	YaaB
6	 47.18	0	4796..6709	+	637	52783861	gyrB	BLi00006	-	DNA gyrase subunit B
7	 46.58	0	6900..9368	+	822	52783862	gyrA	BLi00007	-	DNA gyrase subunit A
8	 39.78	-1	14785..15762	-	325	52783863	yaaC	BLi00013	-	YaaC
9	 46.63	0	15884..17350	+	488	52783864	guaB	BLi00014	-	inositol-5-monophosphate dehydrogenase
10	 43.97	0	17505..18830	+	441	52783865	dacA	BLi00015	-	DacA
11	 50.51	0	19017..19901	+	294	52783866	yaaD	BLi00016	-	pyridoxine biosynthesis protein
12	 49.24	0	19923..20513	+	196	52783867	yaaE	BLi00017	-	glutamine amidotransferase subunit PdxT
13	 47.42	0	20841..22118	+	425	52783868	serS	BLi00018	-	seryl-tRNA synthetase
14	 53.11	+1	23294..24562	-	422	52783869	yojA	BLi00019	-	YojA
15	 44.95	0	24652..25770	-	372	52783870	ysfB	BLi00020	-	YsfB
16	 39.72	-1	25800..26222	-	140	52783871	-	BLi00021	-	hypothetical protein
17	 43.46	0	26577..27218	-	213	52783872	dck	BLi00023	-	deoxyadenosine/deoxycytidine kinase
18	 41.03	-1	27215..27838	-	207	52783873	dgk	BLi00024	-	deoxyguanosine kinase
19	 51.67	+1	27925..29244	-	439	52783874	ydhD	BLi00025	-	YdhD
20	 41.25	-1	29282..29824	-	180	52783875	yaaI	BLi00026	-	YaaI
21	 52.76	+1	29907..30395	+	162	52783876	yaaJ	BLi00027	-	YaaJ
22	 47.03	0	30881..32581	+	566	52783877	dnaX	BLi00028	-	DNA polymerase III subunits gamma and tau
23	 42.90	0	32608..32931	+	107	52783878	yaaK	BLi00029	-	hypothetical protein
24	 44.39	0	32945..33541	+	198	52783879	recR	BLi00030	-	recombination protein RecR
25	 40.00	-1	33562..33786	+	74	52783880	yaaL	BLi00031	-	YaaL
26	 41.57	-1	33851..34117	+	88	52783881	bofA	BLi00032	-	BofA
27	 41.10	-1	40021..40638	+	205	52783882	xpaC	BLi00038	-	XpaC
28	 43.72	0	40654..41847	+	397	52783883	yaaN	BLi00039	-	YaaN
29	 46.88	0	41910..43430	+	506	52783884	yaaO	BLi00040	-	YaaO
30	 45.07	0	43427..44065	+	212	52783885	tdk	BLi00041	-	thymidylate kinase
31	 44.85	0	44141..44470	+	109	52783886	yaaQ	BLi00042	-	YaaQ
32	 39.91	-1	44482..44922	+	146	52783887	yaaR	BLi00043	-	YaaR
33	 43.23	0	44934..45923	+	329	52783888	holB	BLi00044	-	DNA polymerase III subunit delta'
34	 45.89	0	45926..46753	+	275	52783889	yaaT	BLi00045	-	YaaT
35	 40.50	-1	46768..47130	+	120	52783890	yabA	BLi00046	-	DNA replication intiation control protein YabA
36	 44.35	0	47195..47938	+	247	52783891	yabB	BLi00047	-	YabB
37	 44.22	0	47925..48218	+	97	52783892	yazA	BLi00048	-	GIY-YIG nuclease superfamily protein
38	 47.43	0	48232..49068	+	278	52783893	yabC	BLi00049	-	YabC
39	 38.95	-1	49117..49401	-	94	52783894	abrB	BLi00050	-	hypothetical protein
40	 45.80	0	49915..51903	+	662	52783895	metG	BLi00051	-	methionyl-tRNA synthetase
41	 45.18	0	51988..52755	+	255	52783896	yabD	BLi00052	-	YabD
42	 44.12	0	52872..54197	+	441	52783897	yabE	BLi00053	-	hypothetical protein
43	 48.66	0	54365..54925	+	186	52783898	rnmV	BLi00054	-	RnmV
44	 47.67	0	54918..55796	+	292	52783899	ksgA	BLi00055	-	dimethyladenosine transferase
45	 44.67	0	55938..56837	+	299	52783900	yabG	BLi00056	-	YabG
46	 42.15	0	57062..57322	+	86	52783901	veg	BLi00057	-	hypothetical protein
47	 46.77	0	57479..57664	+	61	52783902	sspF	BLi00058	-	SspF
48	 48.16	0	57962..58831	+	289	52783903	ispE	BLi00059	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
49	 46.04	0	58888..59721	+	277	52783904	purR	BLi00060	-	purine operon repressor
50	 48.94	0	59739..60116	+	125	52783905	yabJ	BLi00061	-	YabJ
51	 43.88	0	60296..60589	+	97	52783906	spoVG	BLi00062	-	regulatory protein SpoVG
52	 47.11	0	60864..62264	+	466	52783907	gcaD	BLi00063	-	GcaD
53	 47.53	0	62285..63235	+	316	52783908	prs	BLi00064	-	ribose-phosphate pyrophosphokinase
54	 45.30	0	63316..63942	+	208	52783909	ctc	BLi00065	-	50S ribosomal protein L25/general stress protein Ctc
55	 43.74	0	64059..64625	+	188	52783910	spoVC	BLi00066	-	peptidyl-tRNA hydrolase
56	 36.80	-2	64682..64912	+	76	52783911	yabK	BLi00067	-	YabK
57	 46.80	0	64977..68510	+	1177	52783912	mfd	BLi00068	-	hypothetical protein
58	 48.42	0	68648..69184	+	178	52783913	spoVT	BLi00069	-	SpoVT
59	 51.16	+1	69398..70990	+	530	52783914	yabM	BLi00070	-	YabM
60	 47.82	0	70980..72449	+	489	52783915	yabN	BLi00071	-	YabN
61	 45.83	0	72456..72719	+	87	52783916	yabO	BLi00072	-	YabO
62	 45.95	0	72796..73104	+	102	52783917	yabP	BLi00073	-	YabP
63	 40.99	-1	73101..73727	+	208	52783918	yabQ	BLi00074	-	YabQ
64	 44.44	0	73744..74121	+	125	52783919	divIC	BLi00075	-	DivIC
65	 40.85	-1	74201..74599	+	132	52783920	yabR	BLi00076	-	hypothetical protein
66	 45.94	0	75115..77604	+	829	52783921	spoIIE	BLi00080	-	SpoIIE
67	 48.37	0	77681..78418	+	245	52783922	yabS	BLi00081	-	YabS
68	 48.50	0	78387..79421	+	344	52783923	yabT	BLi00082	-	YabT
69	 45.07	0	79524..80954	+	476	52783924	yacA	BLi00083	-	YacA
70	 44.26	0	80938..81477	+	179	52783925	hprT	BLi00084	-	hypoxanthine-guanine phosphoribosyltransferase
71	 47.50	0	81574..83493	+	639	52783926	ftsH	BLi00085	-	hypothetical protein
72	 45.43	0	83696..84472	+	258	52783927	yacB	BLi00086	-	pantothenate kinase
73	 48.39	0	84484..85353	+	289	52783928	hslO	BLi00087	-	Hsp33-like chaperonin
74	 42.31	0	85406..86296	+	296	52783929	yacD	BLi00088	-	YacD
75	 46.32	0	86372..87295	+	307	52783930	cysK	BLi00089	-	hypothetical protein
76	 48.68	0	87492..88925	+	477	52783931	pabB	BLi00090	-	para-aminobenzoate synthase component I
77	 50.43	0	88922..89506	+	194	52783932	pabA	BLi00091	-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
78	 47.97	0	89503..90363	+	286	52783933	pabC	BLi00092	-	4-amino-4-deoxychorismate lyase
79	 47.67	0	90376..91233	+	285	52783934	sul	BLi00093	-	Sul
80	 46.35	0	91205..91588	+	127	52783935	folB	BLi00094	-	hypothetical protein
81	 43.51	0	91585..92085	+	166	52783936	folK	BLi00095	-	hypothetical protein
82	 47.41	0	92263..93264	+	333	52783937	yacF	BLi00096	-	YacF
83	 43.67	0	93349..94848	+	499	52783938	lysS	BLi00097	-	lysyl-tRNA synthetase
84	 35.91	-2	100226..100690	+	154	52783939	ctsR	BLi00101	-	hypothetical protein
85	 40.90	-1	100705..101259	+	184	52783940	mcsA	BLi00102	-	McsA
86	 44.69	0	101259..102350	+	363	52783941	mcsB	BLi00103	-	ATP:guanido phosphotransferase
87	 48.13	0	102347..104779	+	810	52783942	clpC	BLi00104	-	ClpC
88	 48.91	0	104859..106238	+	459	52783943	radA	BLi00105	-	DNA repair protein RadA
89	 44.85	0	106242..107318	+	358	52783944	yacK	BLi00106	-	DNA integrity scanning protein DisA
90	 44.72	0	107450..108538	+	362	52783945	yacL	BLi00107	-	YacL
91	 46.41	0	108555..109250	+	231	52783946	ispD	BLi00108	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
92	 49.48	0	109243..109719	+	158	52783947	ispF	BLi00109	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
93	 46.36	0	109801..111258	+	485	52783948	gltX	BLi00110	-	glutamyl-tRNA synthetase
94	 49.00	0	111560..112210	+	216	52783949	cysE	BLi00111	-	hypothetical protein
95	 45.01	0	112207..113610	+	467	52783950	cysS	BLi00112	-	cysteinyl-tRNA synthetase
96	 48.92	0	113613..114029	+	138	52783951	yazC	BLi00113	-	YazC
97	 52.80	+1	114026..114775	+	249	52783952	yacO	BLi00114	-	YacO
98	 46.98	0	114781..115293	+	170	52783953	yacP	BLi00115	-	YacP
99	 42.71	0	115357..116028	+	223	52783954	sigH	BLi00116	-	RNA polymerase factor sigma-70
100	 37.33	-1	116111..116260	+	49	52783955	rpmG	BLi00117	-	50S ribosomal protein L33
46.17	MEAN

4.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.