IslandPath Analysis: Bacillus licheniformis ATCC 14580



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.10   STD DEV: 4.62
Bacillus licheniformis ATCC 14580, complete genome - 1..4222597
4178 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 43.18	0	507..1847	+	446	52078492	dnaA	BL00076	-	chromosomal replication initiation protein
2	 44.59	0	2024..3160	+	378	52078493	dnaN	BL00077	-	DNA polymerase III subunit beta
3	 46.30	0	3328..3543	+	71	163119170	yaaA	BL00078	-	hypothetical protein
4	 42.77	0	3560..4672	+	370	52078495	recF	BL00079	-	recombination protein F
5	 41.15	-1	4690..4932	+	80	52078496	yaaB	BL00080	-	YaaB
6	 47.24	0	4986..6905	+	639	52078497	gyrB	BL00081	-	DNA gyrase subunit B
7	 46.58	0	7096..9564	+	822	52078498	gyrA	BL00082	-	DNA gyrase subunit A
8	 39.78	-1	14981..15958	-	325	163119171	yaaC	BL02362	-	hypothetical protein
9	 46.63	0	16080..17546	+	488	52078500	guaB	BL02350	-	inositol-5-monophosphate dehydrogenase
10	 43.97	0	17701..19026	+	441	52078501	dacA	BL02352	-	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
11	 50.51	0	19213..20097	+	294	52078502	pdxS	BL02353	-	pyridoxine biosynthesis protein
12	 49.24	0	20119..20709	+	196	52078503	pdxT	BL02354	-	glutamine amidotransferase subunit PdxT
13	 47.42	0	21037..22314	+	425	52078504	serS	BL02355	-	seryl-tRNA synthetase
14	 51.64	+1	22344..23474	-	376	52078505	glxK	BL02363	-	glycerate kinase GlxK
15	 53.11	+1	23490..24758	-	422	52078506	gntT	BL02364	-	putative gluconate transporter
16	 44.95	0	24848..25966	-	372	52078507	-	BL02365	-	putative sugar diacid recognition protein
17	 39.72	-1	25996..26418	-	140	52078508	-	BL05000	-	heavy metal transport/detoxification protein
18	 43.46	0	26773..27414	-	213	52078509	dck	BL02366	-	deoxyadenosine/deoxycytidine kinase
19	 41.03	-1	27411..28034	-	207	52078510	dgk	BL02367	-	deoxyguanosine kinase
20	 51.67	+1	28121..29440	-	439	52078511	yaaH	BL02368	-	glycoside hydrolase family protein
21	 41.25	-1	29478..30020	-	180	52078512	yaaI	BL02370	-	putative isochorismatase hydrolase YaaI
22	 49.75	0	30001..30591	+	196	163119172	yaaJ	BL02356	-	putative cytidine/deoxycytidylate deaminase, zinc-binding region YaaJ
23	 47.03	0	31077..32777	+	566	163119173	dnaX	BL02357	-	DNA polymerase III subunits gamma and tau
24	 42.90	0	32804..33127	+	107	163119174	yaaK	BL02358	-	hypothetical protein
25	 44.39	0	33141..33737	+	198	52078516	recR	BL02359	-	recombination protein RecR
26	 40.00	-1	33758..33982	+	74	52078517	yaaL	BL02360	-	hypothetical protein
27	 41.57	0	34047..34313	+	88	52078518	bofA	BL02361	-	BofA
28	 34.90	-2	39833..40024	+	63	163119175	csfB	BL05001	-	CsfB
29	 41.10	-1	40217..40834	+	205	52078520	xpaC	BL02506	-	XpaC
30	 43.72	0	40850..42043	+	397	52078521	yaaN	BL02507	-	putative toxic anion resistance protein YaaN
31	 46.92	0	42184..43626	+	480	52078522	yaaO	BL02508	-	putative Orn/Lys/Arg decarboxylase, C-terminal YaaO
32	 45.07	0	43623..44261	+	212	52078523	tmk	BL02509	-	thymidylate kinase
33	 44.85	0	44337..44666	+	109	52078524	yaaQ	BL02510	-	YaaQ
34	 39.91	-1	44678..45118	+	146	163119176	yaaR	BL05002	-	hypothetical protein
35	 43.23	0	45130..46119	+	329	52078526	holB	BL00541	-	DNA polymerase III subunit delta'
36	 45.89	0	46122..46949	+	275	52078527	yaaT	BL00539	-	putative signal peptidase II YaaT
37	 40.50	-1	46964..47326	+	120	52078528	yabA	BL00538	-	DNA replication intiation control protein YabA
38	 44.35	0	47391..48134	+	247	52078529	yabB	BL00537	-	hypothetical protein
39	 44.22	0	48121..48414	+	97	52078530	yazA	BL00536	-	GIY-YIG nuclease superfamily protein
40	 46.87	0	48386..49264	+	292	163119177	yabC	BL00535	-	methyltransferase
41	 38.95	-1	49313..49597	-	94	52078532	abrB	BL00502	-	transcriptional regulator AbrB
42	 45.80	0	50111..52099	+	662	52078533	metS	BL00533	-	methionyl-tRNA synthetase
43	 45.18	0	52184..52951	+	255	52078534	yabD	BL00532	-	putative TatD-related deoxyribonuclease YabD
44	 44.12	0	53068..54393	+	441	163119178	yabE	BL00531	-	hypothetical protein
45	 48.66	0	54561..55121	+	186	52078536	rnmV	BL00530	-	ribonuclease M5
46	 47.67	0	55114..55992	+	292	52078537	ksgA	BL00529	-	dimethyladenosine transferase
47	 44.67	0	56152..57033	+	293	163119179	yabG	BL00528	-	spore coat assembly peptidase U57, YabG
48	 42.15	0	57258..57518	+	86	52078539	veg	BL00527	-	hypothetical protein
49	 46.77	0	57675..57860	+	61	52078540	sspF	BL00526	-	small acid-soluble spore protein (alpha/beta-type SASP)
50	 48.16	0	58158..59027	+	289	163119180	ispE	BL00525	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
51	 46.04	0	59084..59917	+	277	52078542	purR	BL00523	-	purine operon repressor
52	 48.94	0	59935..60312	+	125	52078543	yabJ	BL00522	-	putative regulator of purine operon, putative translation initiation inhibitor
53	 43.88	0	60492..60785	+	97	52078544	spoVG	BL00521	-	regulatory protein SpoVG
54	 47.26	0	61090..62460	+	456	52078545	gcaD	BL00520	-	UDP-N-acetylglucosamine pyrophosphorylase
55	 47.53	0	62481..63431	+	316	52078546	prs	BL00519	-	ribose-phosphate pyrophosphokinase
56	 45.30	0	63512..64138	+	208	52078547	ctc	BL00518	-	50S ribosomal protein L25/general stress protein Ctc
57	 43.74	0	64255..64821	+	188	52078548	spoVC	BL00517	-	peptidyl-tRNA hydrolase
58	 36.80	-2	64878..65108	+	76	52078549	yabK	BL00516	-	hypothetical protein
59	 46.80	0	65173..68706	+	1177	52078550	mfd	BL00515	-	transcription-repair coupling factor
60	 48.42	0	68844..69380	+	178	52078551	spoVT	BL00514	-	transcriptional regulator
61	 51.16	+1	69594..71186	+	530	52078552	yabM	BL00513	-	putative polysaccharide biosynthesis protein YabM
62	 47.82	0	71176..72645	+	489	52078553	yabN	BL00512	-	putative phosphatase and methylase
63	 45.83	0	72652..72915	+	87	52078554	yabO	BL00511	-	putative RNA-binding S4 protein YabO
64	 45.95	0	72992..73300	+	102	52078555	yabP	BL00510	-	hypothetical protein
65	 40.99	-1	73297..73923	+	208	52078556	yabQ	BL00509	-	essential protein for formation of the spore cortex YabQ
66	 44.44	0	73940..74317	+	125	52078557	divIC	BL00508	-	cell-division initiation protein
67	 40.85	-1	74397..74795	+	132	52078558	yabR	BL00507	-	hypothetical protein
68	 45.94	0	75311..77800	+	829	52078559	spoIIE	BL00506	-	serine phosphatase
69	 48.37	0	77877..78614	+	245	52078560	yabS	BL00505	-	YabS
70	 48.50	0	78583..79617	+	344	52078561	yabT	BL00504	-	putative serine/threonine-protein kinase
71	 45.07	0	79720..81150	+	476	52078562	tilS	BL00503	-	tRNA(Ile)-lysidine synthetase
72	 44.26	0	81134..81673	+	179	52078563	hprT	BL05003	-	hypoxanthine-guanine phosphoribosyltransferase
73	 47.50	0	81770..83689	+	639	52078564	ftsH	BL00852	-	cell-division protein and general stress protein (class III heat-shock)
74	 45.43	0	83892..84668	+	258	163119181	yacB	BL00853	-	pantothenate kinase
75	 48.39	0	84680..85549	+	289	52078566	hslO	BL00854	-	Hsp33-like chaperonin
76	 42.31	0	85602..86492	+	296	163119182	yacD	BL00855	-	putative PpiC-type peptidyl-prolyl cis-trans isomerase
77	 46.32	0	86568..87491	+	307	163119183	cysK	BL00857	-	cysteine synthetase A
78	 48.71	0	87691..89121	+	476	52078569	pabB	BL00858	-	para-aminobenzoate synthase (subunit A)
79	 50.43	0	89118..89702	+	194	52078570	pabA	BL00859	-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
80	 47.97	0	89699..90559	+	286	52078571	pabC	BL00860	-	4-amino-4-deoxychorismate lyase
81	 47.67	0	90572..91429	+	285	52078572	sul	BL00861	-	dihydropteroate synthase
82	 46.35	0	91401..91784	+	127	52078573	folB	BL00862	-	dihydroneopterin aldolase
83	 43.51	0	91781..92281	+	166	52078574	folK	BL05004	-	7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase
84	 44.29	0	92233..92442	+	69	52078575	yazB	BL05005	-	putative transcriptional regulator
85	 47.41	0	92459..93460	+	333	52078576	dus1	BL03311	-	putative dihydrouridine synthase TIM-barrel protein
86	 43.67	0	93545..95044	+	499	52078577	lysS	BL03312	-	lysyl-tRNA synthetase
87	 35.91	-2	100422..100886	+	154	52078578	ctsR	BL03258	-	transcriptional regulator
88	 40.90	-1	100901..101455	+	184	52078579	mcsA	BL03259	-	McsA
89	 44.69	0	101455..102546	+	363	52078580	mcsB	BL03260	-	ATP:guanido phosphotransferase
90	 48.13	0	102543..104975	+	810	52078581	clpC	BL03261	-	class III stress response-related ATPase
91	 48.91	0	105055..106434	+	459	163119184	radA	BL03262	-	DNA repair protein RadA
92	 44.85	0	106438..107514	+	358	52078583	disA	BL03263	-	DNA integrity scanning protein DisA
93	 44.72	0	107646..108734	+	362	52078584	yacL	BL03264	-	hypothetical protein
94	 46.41	0	108751..109446	+	231	52078585	ispD	BL03265	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
95	 49.48	0	109439..109915	+	158	52078586	ispF	BL03266	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
96	 46.36	0	109997..111454	+	485	52078587	gltX	BL03267	-	glutamyl-tRNA synthetase
97	 49.00	0	111756..112406	+	216	52078588	cysE	BL03268	-	serine acetyltransferase
98	 45.01	0	112403..113806	+	467	52078589	cysS	BL03269	-	cysteinyl-tRNA synthetase
99	 48.92	0	113809..114225	+	138	52078590	yazC	BL03270	-	hypothetical protein
100	 52.80	+1	114222..114971	+	249	52078591	yacO	BL03271	-	putative tRNA/rRNA methyltransferase YacO
46.10	MEAN

4.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.