IslandPathversion 1.0

IslandPath Analysis: Bacillus cereus ATCC 10987



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.34 STD DEV: 4.00
Bacillus cereus ATCC 10987, complete genome - 1..5224283
5603 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.42	0	408..1748	+	446	42779082	dnaA	BCE_0001	-	chromosomal replication initiation protein
2	 32.72	0	1927..3066	+	379	42779083	dnaN	BCE_0002	-	DNA polymerase III subunit beta
3	 34.22	0	3182..3406	+	74	42779084	-	BCE_0003	-	hypothetical protein
4	 34.57	0	3418..4545	+	375	42779085	recF	BCE_0004	-	recombination protein F
5	 37.03	0	4584..6506	+	640	42779086	gyrB	BCE_0005	-	DNA gyrase subunit B
6	 36.97	0	6595..9066	+	823	42779087	gyrA	BCE_0006	-	DNA gyrase subunit A
7	 32.32	0	9241..9339	+	32	42779088	-	BCE_0007	-	hypothetical protein
8	 33.53	0	14353..15354	-	333	42779089	-	BCE_0008	-	hypothetical protein
9	 38.59	0	15470..16933	+	487	42779090	guaB	BCE_0009	-	inositol-5-monophosphate dehydrogenase
10	 35.46	0	17038..18354	+	438	42779091	dacA	BCE_0010	-	D-alanyl-D-alanine carboxypeptidase
11	 43.47	+2	18516..19403	+	295	42779092	-	BCE_0011	-	pyridoxine biosynthesis protein
12	 40.27	+1	19422..20012	+	196	42779093	-	BCE_0012	-	glutamine amidotransferase subunit PdxT
13	 38.51	0	20340..21614	+	424	42779094	serS	BCE_0013	-	seryl-tRNA synthetase
14	 34.48	0	21897..22421	+	174	42779095	-	BCE_0014	-	hypothetical protein
15	 35.43	0	22457..23125	-	222	42779096	-	BCE_0015	-	deoxynucleoside kinase family protein
16	 34.91	0	23128..23763	-	211	42779097	-	BCE_0016	-	deoxynucleoside kinase family protein
17	 30.74	-1	23889..24428	-	179	42779098	-	BCE_0017	-	isochorismatase family protein
18	 32.62	0	24406..24546	+	46	42779099	-	BCE_0018	-	hypothetical protein
19	 38.12	0	24536..25036	+	166	42779100	-	BCE_0019	-	cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein
20	 39.02	0	25513..27201	+	562	42779101	dnaX	BCE_0020	-	DNA polymerase III subunits gamma and tau
21	 37.58	0	27224..27553	+	109	42779102	-	BCE_0021	-	hypothetical protein
22	 39.53	+1	27568..28164	+	198	42779103	recR	BCE_0022	-	recombination protein RecR
23	 34.23	0	28179..28400	+	73	42779104	-	BCE_0023	-	hypothetical protein
24	 35.00	0	28316..28495	+	59	42779105	-	BCE_0024	-	hypothetical protein
25	 32.22	0	28593..28862	+	89	42779106	bofA	BCE_0025	-	sigma-k factor processing regulatory protein BofA
26	 25.56	-2	34288..34467	+	59	42779107	-	BCE_0026	-	csfB protein, putative
27	 35.16	0	34540..35961	+	473	42779108	cad	BCE_0027	-	lysine decarboxylase
28	 37.00	0	35963..36589	+	208	42779109	tdk	BCE_0028	-	thymidylate kinase
29	 36.89	0	36625..37608	+	327	42779110	holB	BCE_0029	-	DNA polymerase III subunit delta'
30	 36.32	0	37605..38441	+	278	42779111	-	BCE_0030	-	hypothetical protein
31	 33.61	0	38441..38806	+	121	42779112	-	BCE_0031	-	DNA replication intiation control protein YabA
32	 34.41	0	38927..39667	+	246	42779113	-	BCE_0032	-	hypothetical protein
33	 35.05	0	39654..39944	+	96	42779114	-	BCE_0033	-	GIY-YIG nuclease superfamily protein
34	 35.39	0	39913..40788	+	291	42779115	-	BCE_0034	-	hypothetical protein
35	 34.74	0	40809..41093	-	94	42779116	abrB	BCE_0035	-	transition state transcriptional regulatory protein AbrB
36	 36.16	0	41611..43593	+	660	42779117	metG	BCE_0036	-	methionyl-tRNA synthetase
37	 36.98	0	43759..44526	+	255	42779118	-	BCE_0037	-	TatD family deoxyribonuclease
38	 37.63	0	44740..45297	+	185	42779119	-	BCE_0038	-	primase-related protein
39	 36.63	0	45294..46172	+	292	42779120	ksgA	BCE_0039	-	dimethyladenosine transferase
40	 37.38	0	46283..47146	+	287	42779121	-	BCE_0040	-	yabG protein
41	 36.40	0	47385..47645	+	86	42779122	-	BCE_0041	-	veg protein
42	 39.44	+1	47737..47916	+	59	42779123	sspF	BCE_0042	-	small, acid-soluble spore protein
43	 38.85	0	48113..48982	+	289	42779124	ispE	BCE_0043	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
44	 37.46	0	49037..49885	+	282	42779125	purR	BCE_0044	-	purine operon repressor
45	 33.85	0	49999..50382	+	127	42779126	-	BCE_0045	-	endoribonuclease L-PSP, putative
46	 40.48	+1	50535..50828	+	97	161511032	spoVG	BCE_0046	-	regulatory protein SpoVG
47	 38.48	0	51151..52530	+	459	42779128	gcaD	BCE_0047	-	UDP-N-acetylglucosamine pyrophosphorylase
48	 37.32	0	52549..53502	+	317	42779129	prs	BCE_0048	-	ribose-phosphate pyrophosphokinase
49	 35.07	0	53503..54135	+	210	42779130	spoVC	BCE_0049	-	peptidyl-tRNA hydrolase
50	 32.89	0	54206..54430	+	74	42779131	-	BCE_0050	-	hypothetical protein
51	 35.60	0	54537..58067	+	1176	42779132	mfd	BCE_0051	-	transcription-repair coupling factor
52	 36.69	0	58204..58740	+	178	42779133	spoVT	BCE_0052	-	stage V sporulation protein T
53	 34.83	0	58971..60572	+	533	42779134	-	BCE_0053	-	stage V sporulation protein B, putative
54	 37.50	0	60678..62045	+	455	42779135	-	BCE_0054	-	tetrapyrrole methylase family protein/MazG family protein
55	 32.97	0	62060..62335	+	91	42779136	-	BCE_0055	-	S4 domain-containing protein
56	 33.66	0	62394..62702	+	102	42779137	-	BCE_0056	-	yabP protein
57	 32.72	0	62699..63352	+	217	42779138	-	BCE_0057	-	hypothetical protein
58	 35.09	0	63310..63708	+	132	42779139	divIC	BCE_0058	-	cell division protein DivIC
59	 42.65	+1	63796..64278	+	160	42779140	-	BCE_0059	-	hypothetical protein
60	 36.44	0	64950..67328	+	792	42779141	spoIIE	BCE_0060	-	stage II sporulation protein E
61	 36.55	0	67554..68984	+	476	42779142	-	BCE_0061	-	hypothetical protein
62	 34.25	0	68981..69523	+	180	42779143	hpt	BCE_0062	-	hypoxanthine-guanine phosphoribosyltransferase
63	 40.43	+1	69609..71510	+	633	42779144	ftsH	BCE_0063	-	cell division protein FtsH
64	 37.52	0	71736..72524	+	262	42779145	-	BCE_0064	-	pantothenate kinase
65	 39.50	+1	72531..73406	+	291	42779146	hslO	BCE_0065	-	Hsp33-like chaperonin
66	 39.18	0	73511..74434	+	307	42779147	cysK	BCE_0066	-	cysteine synthase A
67	 38.39	0	74609..76051	+	480	42779148	pabB	BCE_0067	-	para-aminobenzoate synthase component I
68	 39.29	0	76057..76644	+	195	42779149	pabA	BCE_0068	-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
69	 36.66	0	76638..77510	+	290	42779150	pabC	BCE_0069	-	4-amino-4-deoxychorismate lyase
70	 39.50	+1	77503..78345	+	280	42779151	folP	BCE_0070	-	dihydropteroate synthase
71	 36.36	0	78346..78708	+	120	42779152	folB	BCE_0071	-	dihydroneopterin aldolase
72	 34.69	0	78705..79220	+	171	42779153	folK	BCE_0072	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
73	 41.18	+1	79172..79375	+	67	42779154	-	BCE_0073	-	DNA-binding protein
74	 40.44	+1	79399..80397	+	332	42779155	-	BCE_0074	-	NifR3 family TIM-barrel protein
75	 36.93	0	80557..82056	+	499	42779156	lysS	BCE_0075	-	lysyl-tRNA synthetase
76	 24.44	-2	82152..82286	+	44	42779157	-	BCE_0076	-	hypothetical protein
77	 29.37	-1	82283..82408	+	41	42779158	-	BCE_0077	-	hypothetical protein
78	 33.33	0	87416..87877	+	153	42779159	ctsR	BCE_0078	-	transcriptional regulator CtsR
79	 35.34	0	88051..88599	+	182	42779160	-	BCE_0079	-	hypothetical protein
80	 34.65	0	88604..89668	+	354	42779161	-	BCE_0080	-	ATP:guanido phosphotransferase
81	 38.42	0	89691..92126	+	811	42779162	-	BCE_0081	-	negative regulator of genetic competence ClpC/MecB
82	 39.36	+1	92223..93599	+	458	42779163	radA	BCE_0082	-	DNA repair protein RadA
83	 37.52	0	93603..94676	+	357	42779164	-	BCE_0083	-	DNA integrity scanning protein DisA
84	 35.05	0	94837..95946	+	369	42779165	-	BCE_0084	-	hypothetical protein
85	 38.91	0	95963..96643	+	226	42779166	ispD	BCE_0085	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
86	 36.69	0	96759..97235	+	158	42779167	ispF	BCE_0086	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
87	 36.83	0	97325..98782	+	485	42779168	gltX	BCE_0087	-	glutamyl-tRNA synthetase
88	 37.99	0	99213..99878	+	221	42779169	cysE	BCE_0088	-	serine O-acetyltransferase
89	 36.77	0	99859..101256	+	465	42779170	cysS	BCE_0089	-	cysteinyl-tRNA synthetase
90	 37.75	0	101259..101666	+	135	42779171	-	BCE_0090	-	hypothetical protein
91	 37.77	0	101663..102406	+	247	42779172	-	BCE_0091	-	RNA methyltransferase
92	 38.79	0	102410..102922	+	170	42779173	-	BCE_0092	-	hypothetical protein
93	 35.91	0	102990..103649	+	219	42779174	sigH	BCE_0093	-	RNA polymerase factor sigma-70
94	 33.33	0	103777..103923	+	48	42779175	rpmG	BCE_0094	-	50S ribosomal protein L33
95	 37.78	0	103956..104135	+	59	42779176	secE	BCE_0095	-	preprotein translocase subunit SecE
96	 37.27	0	104267..104800	+	177	42779177	nusG	BCE_0096	-	transcription antitermination protein NusG
97	 43.19	+1	104968..105393	+	141	42779178	rplK	BCE_0097	-	50S ribosomal protein L11
98	 40.98	+1	105571..106263	+	230	42779179	rplA	BCE_0098	-	50S ribosomal protein L1
99	 41.12	+1	106496..106996	+	166	42779180	rplJ	BCE_0099	-	50S ribosomal protein L10
100	 39.17	0	107064..107423	+	119	42779181	rplL	BCE_0100	-	50S ribosomal protein L7/L12
35.34	MEAN

4.00	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.