IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis CO92



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.92 STD DEV: 4.90
Yersinia pestis strain CO92, complete genome - 0..4653728
3885 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 42.86 -1      271..711      	 -	146	16120354	-	YPO0001	C	putative flavoprotein	
2	 41.56 -1      804..1265     	 -	153	16120355	asnC	YPO0002	K	regulatory protein	
3	 45.52        1435..2427     	 +	330	16120356	asnA	YPO0003	E	aspartate-ammonia ligase	
4	 47.72        2526..3992     	 -	488	16120357	-	YPO0004	S	conserved hypothetical protein	
5	 46.65        3996..5549     	 -	517	16120358	-	YPO0005	R	conserved hypothetical protein	
6	 45.80        5823..7691     	 +	622	16120359	kup	YPO0006	P	potassium transport protein	
7	 48.10        7896..8315     	 +	139	16120360	-	YPO0007	G	ribose permease	
8	 50.05        8366..9292     	 +	308	16120361	rbsK	YPO0008	G	ribokinase	
9	 46.46        9512..10936    	 -	474	16120362	-	YPO0009	G	putative membrane transport protein	
10	 44.06       11016..11705    	 -	229	16120363	-	YPO0010	K	putative GntR-famly transcriptional regulator	
11	 49.79       17906..19114    	 +	402	16120364	y1062	YPO0011	L	transposase for the IS285 insertion element	
12	 40.68 -1    19172..19702    	 -	176	16120365	mobB	YPO0012	H	probable molybdopterin-guanine dinucleotide biosynthesis protein B	
13	 43.30       19702..20343    	 -	213	16120366	mobA	YPO0013	H	molybdopterin-guanine dinucleotide biosynthesis protein A	
14	 41.11 -1    20443..20712    	 +	89	16120367	-	YPO0013a	S	conserved hypothetical protein	
15	 46.50       20792..21778    	 +	328	16120368	-	YPO0014	R	conserved hypothetical protein	
16	 42.15 -1    21806..22429    	 +	207	16120369	dsbA	YPO0015	O	secreted thiol:disulfide interchange protein DsbA	
17	 47.52       22921..25719    	 +	932	16120370	polA	YPO0017	L	DNA polymerase I	
18	 45.97       26128..26586    	 +	152	16120371	tnp	YPO0018	L	transposase for the IS1541 insertion element	
19	 46.54       26838..27488    	 -	216	16120372	-	YPO0019	R	conserved hypothetical protein	
20	 48.50       28233..28799    	 +	188	16120373	-	YPO0020	S	conserved hypothetical protein	
21	 47.74       28982..30355    	 +	457	16120374	hemN	YPO0021	H	oxygen-independent coproporphyrinogen III oxidase	
22	 52.65       30409..31821    	 -	470	16120375	ntrC	YPO0022	T	nitrogen regulation protein	
23	 49.24       31829..32878    	 -	349	16120376	ntrB	YPO0023	T	Two component regulatory protein involved in nitrogen assimilation	
24	 50.78       33131..34540    	 -	469	16120377	glnA	YPO0024	E	glutamine synthetase	
25	 42.77 -1    34726..34884    	 -	52	16120378	-	YPO0025	-	possible membrane protein	
26	 49.01       35102..36925    	 +	607	16120379	bipA	YPO0026	N	putative GTPase	
27	 44.16       37247..37837    	 +	196	16120380	-	YPO0027	R	conserved hypothetical protein	
28	 48.02       37934..38818    	 +	294	16120381	rbn	YPO0028	R	ribonuclease BN	
29	 48.86       38825..39262    	 +	145	16120382	-	YPO0029	J	conserved hypothetical protein	
30	 50.45       39336..40118    	 -	260	16120383	-	YPO0030	L	insertion sequence IS100, ATP-binding protein	
31	 52.79       40115..41137    	 -	340	16120384	-	YPO0031	-	transposase for insertion sequence IS100	
32	 50.97       41407..42330    	 +	307	16120385	-	YPO0032	K	conserved membrane protein	
33	 48.30       42465..44174    	 -	569	16120386	-	YPO0033	-	possible exported protein	
34	 50.51       44322..45707    	 -	461	16120387	-	YPO0034	F	putative membrane permease	
35	 50.04       45945..47159    	 +	404	16120388	gltS	YPO0035	E	sodium/glutamate symport carrier protein	
36	 51.63       47525..49606    	 -	693	16120389	recG	YPO0036	L	ATP-dependent DNA helicase	
37	 49.64       49607..50299    	 -	230	16120390	trmH	YPO0037	J	tRNA (guanosine-2'-O-)-methyltransferase	
38	 48.93       50305..52413    	 -	702	16120391	spoT	YPO0038	T	guanosine-3',5'-bisbis(diphosphate) 3'-pyrophosphydrolase	
39	 51.45       52433..52708    	 -	91	16120392	rpoZ	YPO0039	K	DNA-directed RNA polymerase, omega chain	
40	 46.47       52763..53386    	 -	207	16120393	gmk	YPO0040	F	guanylate kinase	
41	 48.12       53787..55490    	 +	567	16120394	-	YPO0041	L	putative DNA ligase	
42	 47.28       55503..56126    	 -	207	16120395	-	YPO0042	S	putative membrane protein	
43	 48.50       56529..57392    	 -	287	16120396	-	YPO0043	S	conserved hypothetical protein	
44	 51.32       57519..58235    	 +	238	16120397	rph	YPO0044	J	ribonuclease PH	
45	 50.77       58402..59049    	 +	215	16120398	pyrE	YPO0045	F	orotate phosphoribosyltransferase	
46	 47.91       59184..59780    	 -	198	16120399	ttk	YPO0046	K	TetR-family regulatory protein	
47	 49.12       59902..60357    	 -	151	16120400	dut	YPO0047	F	deoxyuridine 5'-triphosphate nucleotidohydrolase	
48	 48.11       60338..61555    	 -	405	16120401	dfp	YPO0048	H	DNA/pantothenate metabolism flavoprotein	
49	 45.44       61749..62417    	 +	222	16120402	radC	YPO0049	L	putative DNA repair protein	
50	 50.63       62680..62916    	 +	78	16120403	rpmB	YPO0050	J	50S ribosomal protein L28	
51	 39.29 -1    62928..63095    	 +	55	16120404	rpmG	YPO0051	J	50S ribosomal protein L33	
52	 48.89       63178..63987    	 +	269	16120405	mutM	YPO0052	L	formamidopyrimidine-DNA glycosylase	
53	 46.25       63993..64472    	 -	159	16120406	coaD	YPO0053	H	phosphopantetheine adenylyltransferase	
54	 46.62       64469..65251    	 -	260	16120407	kdtX	YPO0054	M	lipopolysaccharide core biosynthesis glycosyl transferase	
55	 50.55       65252..66529    	 -	425	16120408	kdtA	YPO0055	M	3-deoxy-D-manno-octulosonic-acid transferase	
56	 50.72       66949..67914    	 -	321	16120409	rfaC	YPO0056	M	lipopolysaccharide heptosyltransferase-1	
57	 51.74       67914..68978    	 -	354	16120410	rfaF	YPO0057	M	ADP-heptose--LPS heptosyltransferase II	
58	 45.12       69009..69941    	 -	310	16120411	rfaD	YPO0058	M	ADP-L-glycero-D-manno-heptose-6-epimerase	
59	 50.17       70187..71398    	 +	403	16120412	kbl	YPO0059	H	2-amino-3-ketobutyrate coenzyme A ligase	
60	 48.15       71408..72433    	 +	341	16120413	tdh	YPO0060	E	threonine 3-dehydrogenase	
61	 50.26       73529..74881    	 -	450	16120414	-	YPO0063	M	putative membrane protein	
62	 50.13       74909..76456    	 -	515	16120415	-	YPO0064	G	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	
63	 45.06       76853..77287    	 +	144	16120416	-	YPO0065	P	putative membrane protein	
64	 51.41       77406..77654    	 +	82	16120417	grxC	YPO0066	O	glutaredoxin	
65	 48.43       77742..78218    	 +	158	16120418	secB	YPO0067	N	protein-export protein	
66	 51.57       78218..79237    	 +	339	16120419	gpsA	YPO0068	C	glycerol-3-phosphate dehydrogenase	
67	 45.39       79297..79437    	 +	46	16120420	-	YPO0069	-	hypothetical protein	
68	 49.76       79503..80324    	 +	273	16120421	cysE	YPO0070	E	serine acetyltransferase	
69	 49.08       80447..80935    	 -	162	16120422	-	YPO0071	J	putative methyltransferase	
70	 52.02       81124..82188    	 +	354	16120423	-	YPO0072	L	bifunctional regulatory protein/DNA repair protein	
71	 49.89       82237..83613    	 -	458	16120424	cpxA	YPO0073	T	two component sensor kinase	
72	 49.93       83610..84308    	 -	232	16120425	cpxR	YPO0074	T	two component system response regulatory protein	
73	 46.63       84482..84970    	 +	162	16120426	cpxP	YPO0075	S	putative exported protein	
74	 51.04       85648..86607    	 +	319	16120427	-	YPO0076	-	conserved hypothetical protein	
75	 48.50       87169..88071    	 +	300	16120428	-	YPO0077	P	putative integral membrane protein	
76	 47.15       88289..89272    	 +	327	16120429	pfkA	YPO0078	G	6-phosphofructokinase	
77	 46.06       89493..90482    	 +	329	16120430	sbp1	YPO0079	P	exported sulfate-binding protein	
78	 48.23       90732..91550    	 -	272	16120431	-	YPO0080	P	hypothetical protein	
79	 44.61       91626..93053    	 -	475	16120432	-	YPO0081	P	putative membrane transport protein	
80	 54.06 +1    93119..93832    	 -	237	16120433	-	YPO0082	H	possible transferase	
81	 47.37       93829..94761    	 -	310	16120434	-	YPO0083	S	hypothetical protein	
82	 51.19       94892..95938    	 +	348	16120435	-	YPO0084	K	possible transcriptional regulator	
83	 48.96       96170..96937    	 -	255	16120436	tpiA	YPO0085	G	triosephosphate isomerase	
84	 45.13       97066..97701    	 -	211	16120437	-	YPO0086	-	putative exported protein	
85	 51.95       97849..98283    	 +	144	16120438	-	YPO0087	S	conserved membrane protein	
86	 52.07       98624..99370    	 -	248	16120439	fpr	YPO0088	C	ferredoxin--NADP reductase	
87	 50.88      101532..102380   	 -	282	16120440	glpF	YPO0091	G	glycerol uptake facilitator protein	
88	 39.17 -1   102390..102629   	 -	79	16120441	-	YPO0092	-	hypothetical protein	
89	 42.92 -1   103008..103247   	 +	79	16120442	-	YPO0093	S	conserved hypothetical protein	
90	 45.75      103455..103913   	 -	152	16120443	tnp	YPO0094	L	transposase for the IS1541 insertion element	
91	 50.45      105645..106427   	 -	260	16120444	-	YPO0096	L	insertion sequence IS100, ATP-binding protein	
92	 52.59      106424..107446   	 -	340	16120445	-	YPO0097	-	transposase for insertion sequence IS100	
93	 38.83 -1   108358..109593   	 -	411	16120446	-	YPO0099	Q	putative exported protein	
94	 45.83      109863..110102   	 +	79	16120447	-	YPO0100	-	hypothetical protein	
95	 29.33 -2   110277..110426   	 +	49	16120448	-	YPO0101	-	hypothetical protein	
96	 53.16 +1   110732..111316   	 +	194	16120449	-	YPO0102	-	putative exported protein	
97	 47.53      111433..111918   	 -	161	16120450	menG	YPO0103	H	S-adenosylmethionine:2-demethylmenaquinone methyltransferase	
98	 49.02      112060..112977   	 -	305	16120451	menA	YPO0104	H	1,4-dihydroxy-2-naphthoate octaprenyltransferase	
99	 48.80      113213..114544   	 -	443	16120452	hslU	YPO0105	O	ATP-binding heat shock protein	
100	 48.76      114615..115139   	 -	174	16120453	hslV	YPO0106	O	heat shock protein	

 
 47.92 MEAN 
 
 4.90  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.