IslandPath Analysis: Yersinia pestis KIM



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.97   STD DEV: 5.00
Yersinia pestis KIM, complete genome - 0..4600755
4090 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 42.86 -1       21..461      	 -	146	22123923	mioC	y0001	-	initiation of chromosome replication	
2	 41.56 -1      554..1015     	 -	153	22123924	asnC	y0002	-	regulator for asnA, asnC and gidA	
3	 45.52        1185..2177     	 +	330	22123925	asnA	y0003	-	asparagine synthetase A	
4	 47.72        2276..3742     	 -	488	22123926	-	y0004	-	hypothetical protein	
5	 46.65        3746..5299     	 -	517	22123927	-	y0005	-	putative 2-component regulator	
6	 45.80        5573..7441     	 +	622	22123928	kup	y0006	-	low affinity potassium transport system	
7	 48.10        7646..8065     	 +	139	22123929	rbsD	y0007	-	D-ribose high-affinity transport system; membrane-associated protein	
8	 50.05        8116..9042     	 +	308	22123930	rbsK	y0008	-	ribokinase	
9	 51.47        9062..9265     	 +	67	22123931	-	y0009	-	hypothetical	
10	 46.46        9262..10686    	 -	474	22123932	-	y0010	-	putative permease	
11	 44.06       10766..11455    	 -	229	22123933	-	y0011	-	hypothetical protein	
12	 53.43 +1    17019..17426    	 -	135	22123934	-	y0012	-	hypothetical	
13	 44.52       18140..19069    	 +	309	22123935	metA	y0013	-	homoserine transsuccinylase	
14	 26.00 -2    19262..19411    	 -	49	22123936	-	y0014	-	hypothetical	
15	 47.98       19456..21087    	 +	543	22123937	aceB	y0015	-	malate synthase A	
16	 51.30       21134..22441    	 +	435	22123938	aceA	y0016	-	isocitrate lyase	
17	 46.41       22514..24241    	 +	575	22123939	aceK	y0018	-	isocitrate dehydrogenase kinase/phosphatase	
18	 51.45       24077..24214    	 -	45	22123940	-	y0017	-	hypothetical	
19	 53.70 +1    24361..24954    	 -	197	22123941	iclR	y0019	-	repressor of aceBA operon	
20	 51.92       25420..29115    	 +	1231	22123942	metH	y0020	-	B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase, repressor of metE and metF	
21	 44.49       29211..34175    	 -	1654	22123943	hylA	y0021	-	hemolysin precursor	
22	 52.74       36445..37830    	 -	461	22123944	lysC	y0023	-	aspartokinase III, lysine sensitive	
23	 48.69       38200..39846    	 +	548	22123945	pgi	y0024	-	glucosephosphate isomerase	
24	 38.97 -1    39981..40388    	 +	135	22123946	-	y0025	-	hypothetical protein	
25	 52.63       40531..41442    	 -	303	22123947	malG	y0026	-	inner membrane permease of maltose/maltodextran ABC transporter	
26	 48.27       41435..43027    	 -	530	22123948	malF	y0027	-	inner membrane permease of maltose ABC transporter	
27	 48.60       43199..44410    	 -	403	22123949	malE	y0028	-	periplasmic maltose-binding protein	
28	 53.44 +1    44888..45250    	 +	120	22123950	-	y0030	-	hypothetical	
29	 53.59 +1    44998..45234    	 +	78	22123951	-	y0029	-	hypothetical	
30	 53.51 +1    45238..46347    	 +	369	22123952	malK	y0031	-	ATP-binding component of ABC transport system for maltose	
31	 49.24       46250..47689    	 +	479	22123953	lamB	y0032	-	maltose high-affinity receptor	
32	 51.29       47912..48841    	 +	309	22123954	malM	y0033	-	periplasmic protein of mal regulon	
33	 32.08 -2    49078..49236    	 -	52	22123955	-	y0034	-	hypothetical	
34	 31.34 -2    49240..49590    	 +	116	22123956	-	y0035	-	hypothetical	
35	 48.94       49742..50260    	 -	172	22123957	-	y0036	-	hemolysin co-regulated protein	
36	 43.91       50781..51281    	 +	166	22123958	-	y0037	-	conserved hypothetical protein	
37	 49.60       51349..52830    	 +	493	22123959	-	y0038	-	hypothetical	
38	 47.62       52837..53277    	 +	146	22123960	-	y0039	-	hypothetical	
39	 48.00       53277..54503    	 +	408	22123961	-	y0040	-	hypothetical	
40	 41.86 -1    54393..54650    	 -	85	22123962	-	y0041	-	putative transposase	
41	 50.45       54689..55471    	 -	260	22123963	-	y0042	-	putative transposase	
42	 52.79       55468..56490    	 -	340	22123964	-	y0043	-	putative transposase	
43	 46.01       56560..56985    	 +	141	22123965	-	y0044	-	putative transposase	
44	 42.92 -1    57193..57432    	 -	79	22123966	-	y0045	-	hypothetical protein	
45	 50.88       58060..58908    	 +	282	22123967	glpF	y0046	-	facilitator for glycerol uptake	
46	 52.03       59085..60608    	 +	507	22123968	glpK	y0047	-	glycerol kinase	
47	 51.21       60737..61855    	 +	372	22123969	glpX	y0048	-	hypothetical	
48	 52.07       62010..62756    	 +	248	22123970	fpr	y0049	-	ferredoxin-NADP reductase	
49	 50.50       63097..63597    	 -	166	22123971	-	y0050	-	hypothetical protein	
50	 45.37       63700..64314    	 +	204	22123972	-	y0051	-	hypothetical protein	
51	 48.96       64443..65210    	 +	255	22123973	tpiA	y0052	-	triosephosphate isomerase	
52	 49.23       65442..66737    	 -	431	22123974	-	y0053	-	putative transcriptional regulator	
53	 49.88       66730..67551    	 +	273	22123975	-	y0054	-	hypothetical	
54	 54.06 +1    67548..68261    	 +	237	22123976	-	y0055	-	hypothetical	
55	 44.61       68327..69754    	 +	475	22123977	-	y0056	-	putative membrane pump protein	
56	 48.23       69830..70648    	 +	272	22123978	modA	y0057	-	molybdate-binding periplasmic protein precursor	
57	 45.55       70898..71920    	 -	340	22123979	sbp	y0058	-	periplasmic sulfate-binding protein of sulfate/thiosulfate ABC transporter	
58	 47.15       72108..73091    	 -	327	22123980	pfkA	y0059	-	6-phosphofructokinase I	
59	 48.50       73309..74211    	 -	300	22123981	-	y0060	-	putative efflux permease protein	
60	 41.46 -1    74583..74705    	 +	40	22123982	-	y0061	-	putative transposase	
61	 51.04       74773..75732    	 -	319	22123983	-	y0062	-	hypothetical protein	
62	 46.33       75777..75953    	 -	58	22123984	-	y0063	-	hypothetical	
63	 43.52       75932..76039    	 +	35	22123985	-	y0064	-	hypothetical	
64	 46.08       76049..76252    	 +	67	22123986	-	y0065	-	hypothetical	
65	 46.63       76410..76898    	 -	162	22123987	-	y0066	-	putative solute-binding periplasmic protein of ABC transpoter	
66	 49.79       77048..77770    	 +	240	22123988	cpxR	y0067	-	transcriptional regulator in 2-component system	
67	 49.89       77767..79143    	 +	458	22123989	cpxA	y0069	-	probable sensor protein, histidine protein kinase	
68	 54.25 +1    78938..79090    	 -	50	22123990	-	y0068	-	hypothetical	
69	 52.02       79192..80256    	 -	354	22123991	ada	y0070	-	O6-methylguanine-DNA methyltransferase; transcription activator/repressor	
70	 48.89       80349..80933    	 +	194	22123992	-	y0071	-	hypothetical protein	
71	 49.70       81056..81880    	 -	274	22123993	cysE	y0072	-	serine acetyltransferase	
72	 51.57       82143..83162    	 -	339	22123994	gpsA	y0073	-	glycerol-3-phosphate dehydrogenase (NAD+)	
73	 48.43       83162..83638    	 -	158	22123995	secB	y0074	-	protein export; molecular chaperone	
74	 51.41       83726..83974    	 -	82	22123996	grxC	y0075	-	glutaredoxin 3	
75	 45.06       84093..84527    	 -	144	22123997	-	y0076	-	hypothetical protein	
76	 50.13       84924..86471    	 +	515	22123998	-	y0077	-	putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	
77	 49.96       86481..87851    	 +	456	22123999	-	y0078	-	putative membrane protein	
78	 48.15       88947..89972    	 -	341	22124000	tdh	y0080	-	threonine dehydrogenase	
79	 50.08       89982..91223    	 -	413	22124001	kbl	y0081	-	2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase)	
80	 45.30       91394..92371    	 +	325	22124002	rfaD	y0083	-	ADP-L-glycero-D-mannoheptose-6-epimerase	
81	 47.81       92016..92243    	 +	75	22124003	-	y0082	-	hypothetical	
82	 51.53       92390..93466    	 +	358	22124004	rfaF	y0084	-	ADP-heptose--lps heptosyltransferase II	
83	 50.71       93442..94431    	 +	329	22124005	rfaC	y0085	-	heptosyl transferase I	
84	 49.71       94743..96128    	 +	461	22124006	kdtA	y0086	-	3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)	
85	 46.62       96129..96911    	 +	260	22124007	-	y0087	-	lipopolysaccharide core biosynthesis glycosyl transferase	
86	 46.25       96908..97387    	 +	159	22124008	kdtB	y0088	-	putative enzyme of lipopolysaccharide synthesis	
87	 48.89       97393..98202    	 -	269	22124009	mutM	y0090	-	formamidopyrimidine DNA glycosylase	
88	 54.72 +1    97396..97554    	 +	52	22124010	-	y0089	-	hypothetical	
89	 39.29 -1    98285..98452    	 -	55	22124011	rpmG	y0091	-	50S ribosomal subunit protein L33	
90	 45.44       98963..99631    	 -	222	22124012	radC	y0092	-	DNA repair protein	
91	 47.67       99711..101042   	 +	443	22124013	dfp	y0093	-	flavoprotein affecting synthesis of DNA and pantothenate metabolism	
92	 49.04      101008..101478   	 +	156	22124014	dut	y0094	-	deoxyuridinetriphosphatase	
93	 47.91      101600..102196   	 +	198	22124015	ttk	y0095	-	putative transcriptional regulator	
94	 50.77      102331..102978   	 -	215	22124016	pyrE	y0096	-	orotate phosphoribosyltransferase	
95	 51.32      103145..103861   	 -	238	22124017	rph	y0097	-	RNase PH	
96	 48.50      103988..104851   	 +	287	22124018	-	y0098	-	putative alpha helix protein	
97	 47.28      105254..105877   	 +	207	22124019	-	y0099	-	hypothetical protein	
98	 48.12      105890..107593   	 -	567	22124020	-	y0100	-	putative enzyme	
99	 46.47      107994..108617   	 +	207	22124021	gmk	y0101	-	guanylate kinase	
100	 51.45      108672..108947   	 +	91	22124022	rpoZ	y0102	-	RNA polymerase, omega subunit	

 
 47.97 MEAN 
 
 5.00  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.