IslandPath Analysis: Xylella fastidiosa Temecula1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.21   STD DEV: 5.17
Xylella fastidiosa Temecula1, complete genome - 0..2519802
2034 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 41.29 -2      146..1465     	 +	439	28197946	dnaA	PD0001	-	chromosomal replication initiator	
2	 37.42 -2     1747..2847     	 +	366	28197947	dnaN	PD0002	-	DNA polymerase III beta chain	
3	 41.00 -2     3153..4247     	 +	364	28197948	recF	PD0003	-	DNA replication and repair RecF protein	
4	 35.37 -2     4501..4746     	 +	81	28197949	-	PD0004	-	conserved hypothetical protein	
5	 46.67 -1     4743..7187     	 +	814	28197950	gyrB	PD0005	-	DNA gyrase subunit B	
6	 44.59 -1     7388..8062     	 +	224	28197951	-	PD0006	-	conserved hypothetical protein	
7	 50.61        8127..8942     	 +	271	28197952	-	PD0007	-	conserved hypothetical protein	
8	 44.22 -1     9046..10239    	 +	397	28197953	-	PD0008	-	conserved hypothetical protein	
9	 52.10       10683..11348    	 +	221	28197954	tonB	PD0009	-	TonB protein	
10	 50.33       11444..12208    	 +	254	28197955	exbB	PD0010	-	biopolymer transport ExbB protein	
11	 42.62 -1    12265..12684    	 +	139	28197956	exbD1	PD0011	-	biopolymer transport ExbD1 protein	
12	 45.01 -1    12691..13101    	 +	136	28197957	exbD2	PD0012	-	biopolymer transport ExbD2 protein	
13	 51.68       13819..16206    	 +	795	28197958	-	PD0013	-	dipeptidyl-peptidase	
14	 52.49       16261..16803    	 +	180	28197959	-	PD0014	-	conserved hypothetical protein	
15	 53.81       17033..17950    	 +	305	28197960	hemF	PD0015	-	coproporphyrinogen III oxidase, aerobic	
16	 38.72 -2    20838..21134    	 +	98	28197961	-	PD0017	-	conserved hypothetical protein	
17	 49.78       21593..22735    	 -	380	28197962	aroG	PD0018	-	phospho-2-dehydro-3-deoxyheptonate aldolase	
18	 53.37       23858..24421    	 +	187	28197963	fimT	PD0019	-	pre-pilin like leader sequence	
19	 50.62       24431..24910    	 +	159	28197964	pilV	PD0020	-	pre-pilin leader sequence	
20	 50.47       24907..25857    	 +	316	28197965	-	PD0021	-	conserved hypothetical protein	
21	 50.51       25854..26441    	 +	195	28197966	pilX	PD0022	-	PilX protein	
22	 52.78       26465..30109    	 +	1214	28197967	pilY1	PD0023	-	PilY1 protein homolog	
23	 50.51       30136..30531    	 +	131	28197968	pilE	PD0024	-	PilE protein	
24	 53.61       30962..31696    	 -	244	28197969	pyrF	PD0025	-	orotidine 5'-phosphate decarboxylase	
25	 52.04       32820..34022    	 +	400	28197970	tyrB	PD0026	-	aspartate aminotranferase	
26	 45.43 -1    34906..35310    	 -	134	28197971	mscL	PD0027	-	large-conductance mechanosensitive channel	
27	 46.33 -1    35638..35991    	 -	117	28197972	-	PD0028	-	conserved hypothetical protein	
28	 48.31       36056..36262    	 +	68	28197973	-	PD0029	-	conserved hypothetical protein	
29	 53.37       36277..37539    	 +	420	28197974	-	PD0030	-	conserved hypothetical protein	
30	 56.24       37722..38603    	 +	293	28197975	comJ	PD0031	-	transformation competence-related protein	
31	 53.59       39197..39739    	 +	180	28197976	-	PD0032	-	conserved hypothetical protein	
32	 54.43       39807..43394    	 +	1195	28197977	mfd	PD0033	-	transcription-repair coupling factor	
33	 52.35       43995..44462    	 +	155	28197978	aroQ	PD0034	-	catabolic dehydroquinase	
34	 53.70       44525..45010    	 +	161	28197979	accB	PD0035	-	biotin carboxyl carrier protein	
35	 54.09       45068..46435    	 +	455	28197980	accC	PD0036	-	biotin carboxylase	
36	 54.64       46613..48799    	 -	728	28197981	uvrD	PD0037	-	DNA helicase II	
37	 47.40       50073..51266    	 +	397	28197982	hmpA	PD0038	-	flavohemoprotein	
38	 46.47 -1    53116..53427    	 +	103	28197983	-	PD0039	-	conserved hypothetical protein	
39	 51.47       53424..54206    	 +	260	28197984	pdxJ	PD0040	-	pyridoxal phosphate biosynthetic protein	
40	 43.95 -1    54701..55774    	 -	357	28197985	korB	PD0041	-	transcriptional repressor	
41	 51.65       56876..57601    	 -	241	28197986	comF	PD0042	-	competence protein F	
42	 51.36       57651..58676    	 +	341	28197987	bioB	PD0043	-	biotin synthase	
43	 50.91       59071..60111    	 +	346	28197988	-	PD0044	-	lipoprotein	
44	 39.92 -2    60529..60771    	 +	80	28197989	-	PD0045	-	conserved hypothetical protein	
45	 53.78       60887..61786    	 -	299	28197990	ubiA	PD0046	-	hydroxybenzoate octaprenyltransferase	
46	 52.08       71282..72097    	 +	271	28197991	mutM	PD0053	-	formamidopyrimidine DNA glycosylase	
47	 46.98 -1    72234..73076    	 -	280	28197992	-	PD0054	-	conserved hypothetical protein	
48	 48.98       73166..74533    	 +	455	28197993	ffh	PD0055	-	signal recognition particle protein	
49	 45.16 -1    74857..75228    	 +	123	28197994	-	PD0056	-	conserved hypothetical protein	
50	 51.75       75271..76068    	 +	265	28197995	-	PD0057	-	conserved hypothetical protein	
51	 49.30       76380..77444    	 -	354	28197996	mrkD	PD0058	-	fimbrial adhesin precursor	
52	 52.63       79042..81555    	 -	837	28197997	fimD	PD0060	-	outer membrane usher protein precursor	
53	 48.69       81774..82574    	 -	266	28197998	-	PD0061	-	chaperone protein precursor	
54	 52.61       82646..83200    	 -	184	28197999	-	PD0062	-	fimbrial subunit precursor	
55	 53.17       84808..85296    	 -	162	28198000	-	PD0063	-	conserved hypothetical protein	
56	 51.53       85376..86683    	 -	435	28198001	kgtP	PD0064	-	alpha-ketoglutarate permease symporter	
57	 53.81       86732..88084    	 -	450	28198002	-	PD0065	-	GTP-binding protein	
58	 45.52 -1    88099..88377    	 -	92	28198003	hfq	PD0066	-	host factor-I protein	
59	 53.25       88481..89434    	 -	317	28198004	miaA	PD0067	-	tRNA delta(2)-isopentenylpyrophosphate transferase	
60	 54.96       89434..90330    	 -	298	28198005	folP	PD0068	-	dihydropteroate synthase	
61	 48.31       90431..90637    	 +	68	28198006	-	PD0069	-	conserved hypothetical protein	
62	 51.14       90639..92576    	 -	645	28198007	hflB	PD0070	-	cell division protein	
63	 49.69       92623..93264    	 -	213	28198008	ftsJ	PD0071	-	cell division protein	
64	 47.39       93334..93639    	 +	101	28198009	-	PD0072	-	conserved hypothetical protein	
65	 53.54       93658..94038    	 +	126	28198010	-	PD0073	-	conserved hypothetical protein	
66	 54.50       94622..96454    	 -	610	28198011	ilvD	PD0074	-	dihydroxy-acid dehydratase	
67	 57.19       97357..97641    	 +	94	28198012	-	PD0075	-	conserved hypothetical protein	
68	 56.85       97642..98772    	 +	376	28198013	-	PD0076	-	glycosyl transferase	
69	 55.93       98753..100084   	 +	443	28198014	-	PD0077	-	membrane protein	
70	 56.13      100273..101193   	 -	306	28198015	htrB	PD0078	-	lipid A biosynthesis lauroyl acyltransferase	
71	 54.00      101272..102582   	 +	436	28198016	kdtA	PD0079	-	3-deoxy-D-manno-octulosonic acid transferase	
72	 51.63      102966..104348   	 +	460	28198017	-	PD0080	-	conserved hypothetical protein	
73	 54.02      104564..104824   	 +	86	28198018	rpsP	PD0081	-	30S ribosomal protein S16	
74	 51.85      104868..105380   	 +	170	28198019	rimM	PD0082	-	16S rRNA processing protein	
75	 53.05      105490..106275   	 +	261	28198020	trmD	PD0083	-	tRNA (guanine-N1-)-methyltransferase	
76	 48.91      106440..106850   	 +	136	28198021	rplS	PD0084	-	50S ribosomal protein L19	
77	 53.41      107277..108053   	 +	258	28198022	map	PD0085	-	methionine aminopeptidase	
78	 54.08      108793..109626   	 +	277	28198023	dapD	PD0086	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	
79	 47.90      109641..109997   	 +	118	28198024	-	PD0087	-	conserved hypothetical protein	
80	 56.61      110153..111286   	 +	377	28198025	dapE	PD0088	-	succinyl-diaminopimelate desuccinylase	
81	 54.96      111688..113379   	 +	563	28198026	asnB	PD0089	-	asparagine synthase B	
82	 49.76      113437..114465   	 -	342	28198027	-	PD0090	-	conserved hypothetical protein	
83	 58.24 +1   115511..116542   	 +	343	28198028	-	PD0091	-	conserved hypothetical protein	
84	 52.52      117015..117650   	 +	211	28198029	lexA	PD0092	-	LexA repressor	
85	 51.25      117832..118875   	 +	347	28198030	recA	PD0093	-	recombination protein RecA	
86	 52.50      119363..122017   	 +	884	28198031	alaS	PD0094	-	alanyl-tRNA synthetase	
87	 49.07      122156..122371   	 +	71	28198032	csrA	PD0095	-	carbon storage regulator	
88	 56.40      123486..125510   	 -	674	28198033	prlC	PD0097	-	oligopeptidase A	
89	 56.73      125570..126676   	 -	368	28198034	cysK	PD0098	-	cysteine synthase	
90	 58.69 +1   127147..127572   	 +	141	28198035	-	PD0099	-	conserved hypothetical protein	
91	 57.72 +1   127660..129492   	 +	610	28198036	copA	PD0100	-	copper resistance protein A precursor	
92	 60.22 +1   129489..130418   	 +	309	28198037	copB	PD0101	-	copper resistance protein B precursor	
93	 58.73 +1   130675..133659   	 -	994	28198038	valS	PD0102	-	valyl-tRNA synthetase	
94	 51.79      133712..133906   	 -	64	28198039	-	PD0103	-	conserved hypothetical protein	
95	 60.56 +1   133969..134394   	 -	141	28198040	holC	PD0104	-	DNA polymerase III holoenzyme chi subunit	
96	 43.59 -1   134394..134861   	 -	155	28198041	-	PD0105	-	conserved hypothetical protein	
97	 61.72 +1   134840..136315   	 -	491	28198042	pepA	PD0106	-	aminopeptidase A/I	
98	 55.43      136425..137510   	 +	361	28198043	-	PD0107	-	conserved hypothetical protein	
99	 53.57      137507..138613   	 +	368	28198044	-	PD0108	-	conserved hypothetical protein	
100	 59.28 +1   138531..139085   	 -	184	28198045	-	PD0109	-	conserved hypothetical protein	

 
 52.21 MEAN 
 
 5.17  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.