IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.18 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 0..2679306
2766 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 40.83 -1      143..1462     	 +	439	15836606	-	XF0001	L	chromosomal replication initiator	
2	 37.42 -2     1759..2859     	 +	366	15836607	-	XF0002	L	DNA polymerase III, beta chain	
3	 41.10 -1     3161..4255     	 +	364	15836608	-	XF0003	L	DNA replication and repair RecF protein	
4	 34.83 -2     4500..4766     	 +	88	15836609	-	XF0004	-	hypothetical protein	
5	 46.79        4763..7207     	 +	814	15836610	-	XF0005	L	DNA gyrase subunit B	
6	 49.62        8042..8962     	 +	306	15836611	-	XF0006	O	conserved hypothetical protein	
7	 43.80 -1     9066..10259    	 +	397	15836612	-	XF0007	R	hypothetical protein	
8	 38.54 -2    10299..10394    	 +	31	15836613	-	XF0008	-	hypothetical protein	
9	 52.55       10703..11368    	 +	221	15836614	-	XF0009	M	TonB protein	
10	 50.46       11464..12228    	 +	254	15836615	-	XF0010	N	biopolymer transport ExbB protein	
11	 43.74 -1    12285..12707    	 +	140	15836616	-	XF0011	N	biopolymer transport ExbD1 protein	
12	 45.26 -1    12711..13121    	 +	136	15836617	-	XF0012	N	biopolymer transport ExbD2 protein	
13	 39.10 -2    13199..13354    	 +	51	15836618	-	XF0013	-	hypothetical protein	
14	 40.17 -1    13513..13629    	 -	38	15836619	-	XF0014	-	hypothetical protein	
15	 52.22       13839..16226    	 +	795	15836620	-	XF0015	E	dipeptidyl-peptidase	
16	 52.67       16281..16823    	 +	180	15836621	-	XF0016	-	hypothetical protein	
17	 53.33       17000..17959    	 +	319	15836622	-	XF0017	H	coproporphyrinogen III oxidase, aerobic	
18	 46.01       18470..18682    	 -	70	15836623	-	XF0018	-	hypothetical protein	
19	 41.83 -1    18746..18898    	 +	50	15836624	-	XF0019	-	hypothetical protein	
20	 49.69       19083..19241    	 -	52	15836625	-	XF0020	-	hypothetical protein	
21	 54.88       19395..19691    	 +	98	15836626	-	XF0021	-	hypothetical protein	
22	 50.00       20230..20457    	 +	75	15836627	-	XF0022	-	hypothetical protein	
23	 47.92       20458..20553    	 +	31	15836628	-	XF0023	-	hypothetical protein	
24	 47.53       20654..20815    	 +	53	15836629	-	XF0024	-	hypothetical protein	
25	 41.96 -1    20982..21236    	 +	84	15836630	-	XF0025	-	hypothetical protein	
26	 50.74       21732..22874    	 -	380	15836631	-	XF0026	E	phospho-2-dehydro-3-deoxyheptonate aldolase	
27	 43.92 -1    22847..23035    	 -	62	15836632	-	XF0027	-	hypothetical protein	
28	 53.72       23999..24562    	 +	187	15836633	-	XF0028	N	pre-pilin like leader sequence	
29	 50.31       24572..25048    	 +	158	15836634	-	XF0029	N	pre-pilin leader sequence	
30	 50.47       25045..25995    	 +	316	15836635	-	XF0030	-	hypothetical protein	
31	 49.66       25992..26579    	 +	195	15836636	-	XF0031	-	PilX protein	
32	 53.61       26603..30295    	 +	1230	15836637	-	XF0032	N	PilY1 gene product	
33	 51.19       30298..30717    	 +	139	15836638	-	XF0033	N	PilE protein	
34	 54.29       31159..31893    	 -	244	15836639	-	XF0034	F	orotidine 5'-phosphate decarboxylase	
35	 49.63       32677..32811    	 +	44	15836640	-	XF0035	-	hypothetical protein	
36	 52.45       33018..34220    	 +	400	15836641	-	XF0036	E	aromatic-amino-acid aminotranferase	
37	 48.92       34249..34434    	 +	61	15836642	-	XF0037	-	hypothetical protein	
38	 53.21       34755..34910    	 -	51	15836643	-	XF0038	-	hypothetical protein	
39	 45.93 -1    35095..35499    	 -	134	15836644	-	XF0039	M	large-conductance mechanosensitive channel	
40	 47.46       35823..36176    	 -	117	15836645	-	XF0040	-	hypothetical protein	
41	 49.04       36199..36459    	 +	86	15836646	-	XF0041	-	hypothetical protein	
42	 53.60       36474..37736    	 +	420	15836647	-	XF0042	-	conserved hypothetical protein	
43	 56.58       37919..38800    	 +	293	15836648	-	XF0043	R	conserved hypothetical protein	
44	 54.26       39398..39937    	 +	179	15836649	-	XF0044	K	hypothetical protein	
45	 55.08       40005..43586    	 +	1193	15836650	-	XF0045	L	transcription-repair coupling factor	
46	 50.00       43591..43686    	 +	31	15836651	-	XF0046	-	hypothetical protein	
47	 52.78       44188..44655    	 +	155	15836652	-	XF0047	E	catabolic dehydroquinase	
48	 54.12       44718..45203    	 +	161	15836653	-	XF0048	I	biotin carboxyl carrier protein of acetyl-CoA carboxilase	
49	 53.76       45219..46628    	 +	469	15836654	-	XF0049	I	biotin carboxylase subunit of acetyl CoA carboxylase	
50	 55.14       46805..48991    	 -	728	15836655	-	XF0050	L	DNA helicase II	
51	 47.54       49381..49746    	 -	121	15836656	-	XF0051	-	hypothetical protein	
52	 37.63 -2    50226..50411    	 -	61	15836657	-	XF0052	-	hypothetical protein	
53	 47.82       50551..51744    	 +	397	15836658	-	XF0053	C	flavohemoprotein	
54	 39.57 -2    51758..52126    	 -	122	15836659	-	XF0054	-	hypothetical protein	
55	 42.59 -1    52212..52319    	 +	35	15836660	-	XF0055	-	hypothetical protein	
56	 37.36 -2    52453..52626    	 +	57	15836661	-	XF0056	-	hypothetical protein	
57	 34.23 -2    52710..52820    	 +	36	15836662	-	XF0057	-	hypothetical protein	
58	 46.34       53457..53579    	 -	40	15836663	-	XF0058	-	hypothetical protein	
59	 46.79       53596..53907    	 +	103	15836664	-	XF0059	-	hypothetical protein	
60	 51.85       53904..54686    	 +	260	15836665	-	XF0060	H	pyridoxal phosphate biosynthetic protein	
61	 44.72 -1    55178..56257    	 -	359	15836666	-	XF0061	K	transcriptional repressor	
62	 39.45 -2    56232..56558    	 -	108	15836667	-	XF0062	-	hypothetical protein	
63	 51.93       57328..58053    	 -	241	15836668	-	XF0063	R	competence protein F	
64	 51.36       58103..59128    	 +	341	15836669	-	XF0064	H	biotin synthase	
65	 44.12 -1    59182..59283    	 +	33	15836670	-	XF0065	-	hypothetical protein	
66	 50.51       59387..60574    	 +	395	15836671	-	XF0066	R	conserved hypothetical protein	
67	 42.50 -1    61039..61278    	 +	79	15836672	-	XF0067	-	hypothetical protein	
68	 52.99       61395..62396    	 -	333	15836673	-	XF0068	H	hydroxybenzoate octaprenyltransferase	
69	 46.31       62418..62810    	 -	130	15836674	-	XF0069	-	hypothetical protein	
70	 45.91 -1    64213..64371    	 -	52	15836675	-	XF0070	-	hypothetical protein	
71	 52.33       71808..72623    	 +	271	15836676	-	XF0071	L	formamidopyrimidine DNA glycosylase	
72	 47.11       72755..73603    	 -	282	15836677	-	XF0072	O	conserved hypothetical protein	
73	 48.81       73755..75059    	 +	434	15836678	-	XF0073	N	signal recognition particle protein	
74	 46.94       75334..75627    	 +	97	15836679	-	XF0074	-	hypothetical protein	
75	 55.22       75779..76582    	 +	267	15836680	-	XF0075	-	hypothetical protein	
76	 40.48 -1    76738..76905    	 -	55	15836681	-	XF0076	-	hypothetical protein	
77	 50.79       76892..77962    	 -	356	15836682	-	XF0077	N	fimbrial adhesin precursor	
78	 50.80       78097..79161    	 -	354	15836683	-	XF0078	N	fimbrial adhesin precursor	
79	 39.24 -2    79229..79465    	 +	78	15836684	-	XF0079	-	hypothetical protein	
80	 49.95       79744..80706    	 -	320	15836685	-	XF0080	N	fimbrial adhesin precursor	
81	 52.66       80781..83486    	 -	901	15836686	-	XF0081	N	outer membrane usher protein precursor	
82	 49.31       83513..84313    	 -	266	15836687	-	XF0082	N	chaperone protein precursor	
83	 52.25       84385..84939    	 -	184	15836688	-	XF0083	N	fimbrial subunit precursor	
84	 37.50 -2    85353..85448    	 +	31	15836689	-	XF0084	-	hypothetical protein	
85	 42.42 -1    85611..85775    	 +	54	15836690	-	XF0085	-	hypothetical protein	
86	 53.37       86421..86909    	 -	162	15836691	-	XF0086	R	conserved hypothetical protein	
87	 51.68       86989..88296    	 -	435	15836692	-	XF0087	G	alpha-ketoglutarate permease symporter	
88	 53.95       88345..89697    	 -	450	15836693	-	XF0088	R	GTP-binding protein	
89	 46.95       89712..89990    	 -	92	15836694	-	XF0089	R	host factor-I protein	
90	 53.46       90094..91047    	 -	317	15836695	-	XF0090	J	tRNA delta(2)-isopentenylpyrophosphate transferase	
91	 54.74       91047..91943    	 -	298	15836696	-	XF0091	H	dihydropteroate synthase	
92	 48.79       92044..92250    	 +	68	15836697	-	XF0092	-	hypothetical protein	
93	 50.88       92252..94189    	 -	645	15836698	-	XF0093	O	cell division protein	
94	 49.38       94237..94878    	 -	213	15836699	-	XF0094	J	cell division protein	
95	 48.37       94948..95253    	 +	101	15836700	-	XF0095	J	conserved hypothetical protein	
96	 54.86       95272..95652    	 +	126	15836701	-	XF0096	S	conserved hypothetical protein	
97	 42.42 -1    95805..95969    	 +	54	15836702	-	XF0097	-	hypothetical protein	
98	 47.69       96040..96234    	 -	64	15836703	-	XF0098	-	hypothetical protein	
99	 54.83       96231..98063    	 -	610	15836704	-	XF0099	E	dihydroxy-acid dehydratase	
100	 56.64       98328..98726    	 -	132	15836705	-	XF0100	-	hypothetical protein	

 
 52.18 MEAN 
 
 6.22  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.