IslandPathversion 1.0

IslandPath Analysis: Xanthomonas campestris



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.32 STD DEV: 4.08
Xanthomonas campestris pv. campestris str. ATCC 33913, complete genome - 0..5076188
4181 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 65.91          42..1370     	 +	442	21229479	dnaA	XCC0001	-	chromosomal replication initiator	
2	 64.58        1646..2746     	 +	366	21229480	dnaN	XCC0002	-	DNA polymerase III beta chain	
3	 65.49        3633..4739     	 +	368	21229481	recF	XCC0003	-	DNA replication and repair RecF protein	
4	 64.99        4853..7297     	 +	814	21229482	gyrB	XCC0004	-	DNA gyrase subunit B	
5	 67.85        7359..8201     	 +	280	21229483	-	XCC0005	-	conserved hypothetical protein	
6	 65.92        8264..9070     	 +	268	21229484	-	XCC0006	-	conserved hypothetical protein	
7	 62.32        9209..10405    	 +	398	21229485	-	XCC0007	-	conserved hypothetical protein	
8	 63.69       10559..11230    	 +	223	21229486	tonB	XCC0008	-	TonB protein	
9	 63.78       11315..12076    	 +	253	21229487	exbB	XCC0009	-	biopolymer transport ExbB protein	
10	 60.28 -1    12123..12545    	 +	140	21229488	exbD1	XCC0010	-	biopolymer transport ExbD1 protein	
11	 60.34 -1    12549..12959    	 +	136	21229489	exbD2	XCC0011	-	biopolymer transport ExbD2 protein	
12	 67.32       14113..14883    	 -	256	21229490	pdxJ	XCC0012	-	pyridoxal phosphate biosynthetic protein	
13	 67.78       14891..15160    	 -	89	21229491	-	XCC0013	-	conserved hypothetical protein	
14	 66.26       15235..16695    	 -	486	21229492	cls	XCC0014	-	cardiolipin synthetase	
15	 68.68       16981..18075    	 +	364	21229493	-	XCC0015	-	conserved hypothetical protein	
16	 66.02       18170..18940    	 -	256	21229494	-	XCC0016	-	conserved hypothetical protein	
17	 66.82       19513..20853    	 -	446	21229495	ompP1	XCC0017	-	outer membrane protein	
18	 67.68       21074..21766    	 +	230	21229496	-	XCC0018	-	conserved hypothetical protein	
19	 61.37       21795..22115    	 +	106	21229497	-	XCC0019	-	conserved hypothetical protein	
20	 69.30       22115..23101    	 +	328	21229498	serA	XCC0020	-	D-3-phosphoglycerate dehydrogenase	
21	 67.87       24036..25616    	 -	526	21229499	ctp	XCC0021	-	carboxyl-terminal protease	
22	 68.72       25781..26998    	 -	405	21229500	-	XCC0022	-	conserved hypothetical protein	
23	 65.30       27169..27825    	 +	218	21229501	-	XCC0023	-	conserved hypothetical protein	
24	 68.40       27884..29668    	 +	594	21229502	-	XCC0024	-	conserved hypothetical protein	
25	 62.04       30029..30460    	 -	143	21229503	-	XCC0025	-	conserved hypothetical protein	
26	 59.90 -1    30893..31942    	 -	349	21229504	egl	XCC0026	-	cellulase	
27	 61.25       32351..33403    	 -	350	21229505	egl	XCC0027	-	cellulase	
28	 63.38       34034..35098    	 -	354	21229506	egl	XCC0028	-	cellulase	
29	 64.21       35412..36470    	 +	352	21229507	yahK	XCC0029	-	alcohol dehydrogenase	
30	 50.49 -2    37451..37957    	 -	168	21229508	-	XCC0030	-	hypothetical protein	
31	 68.49       38002..39483    	 -	493	21229509	gltD	XCC0031	-	glutamate synthase, beta subunit	
32	 67.18       39605..44077    	 -	1490	21229510	gltB	XCC0032	-	glutamate synthase, alpha subunit	
33	 65.48       44280..44702    	 -	140	21229511	-	XCC0033	-	conserved hypothetical protein	
34	 66.75       44888..46072    	 +	394	21229512	-	XCC0034	-	conserved hypothetical protein	
35	 62.87       46188..46766    	 -	192	21229513	-	XCC0035	-	phospholipid N-methyltransferase	
36	 69.00       47691..48161    	 -	156	21229514	-	XCC0036	-	conserved hypothetical protein	
37	 71.58 +1    48632..49465    	 +	277	21229515	-	XCC0037	-	pirin	
38	 67.08       49684..50403    	 +	239	21229516	-	XCC0038	-	putative acyl-carrier phosphodiesterase-like protein	
39	 65.40       49700..50014    	 +	104	21229517	-	XCC0039	-	acyl-carrier phosphodiesterase-like protein	
40	 67.77       50748..51650    	 -	300	21229518	-	XCC0040	-	transcriptional regulator lysR family	
41	 68.30       51941..52246    	 -	101	21229519	-	XCC0041	-	conserved hypothetical protein	
42	 67.40       52243..52920    	 -	225	21229520	nonF	XCC0042	-	NonF-related protein	
43	 68.13       53055..53945    	 +	296	21229521	-	XCC0043	-	transcriptional regulator	
44	 64.21       53983..54552    	 -	189	21229522	-	XCC0044	-	transcriptional regulator	
45	 67.18       54813..55199    	 +	128	21229523	mecI	XCC0045	-	methicillin resistance protein	
46	 68.30       55203..56915    	 +	570	21229524	-	XCC0046	-	ankyrin-like protein	
47	 68.31       57442..58293    	 +	283	21229525	-	XCC0047	-	conserved hypothetical protein	
48	 67.73       58535..59665    	 +	376	21229526	-	XCC0048	-	conserved hypothetical protein	
49	 67.30       60084..60872    	 -	262	21229527	-	XCC0049	-	conserved hypothetical protein	
50	 68.66       60883..63546    	 -	887	21229528	cirA	XCC0050	-	TonB-dependent receptor	
51	 70.38 +1    63652..64809    	 +	385	21229529	xylR	XCC0051	-	xylose repressor-like protein	
52	 67.83       64948..67104    	 +	718	21229530	avrBs2	XCC0052	-	avirulence protein	
53	 69.57 +1    67289..68254    	 -	321	21229531	-	XCC0053	-	conserved hypothetical protein	
54	 67.41       68776..71184    	 -	802	21229532	-	XCC0054	-	ATP-dependent RNA helicase	
55	 65.27       71494..72642    	 -	382	21229533	-	XCC0055	-	conserved hypothetical protein	
56	 67.72       72924..73586    	 +	220	21229534	-	XCC0056	-	hemolysin III	
57	 62.58       73653..73970    	 -	105	21229535	-	XCC0057	-	hypothetical protein	
58	 64.55       73967..74344    	 -	125	21229536	-	XCC0058	-	conserved hypothetical protein	
59	 62.87       74670..75380    	 -	236	21229537	-	XCC0059	-	hypothetical protein	
60	 63.58       75552..76070    	 -	172	21229538	-	XCC0060	-	NAD(P)H oxidoreductase	
61	 64.91       76037..76378    	 -	113	21229539	-	XCC0061	-	conserved hypothetical protein	
62	 65.24       76469..76819    	 +	116	21229540	-	XCC0062	-	conserved hypothetical protein	
63	 47.57 -2    77347..78435    	 +	362	21229541	-	XCC0063	-	regulatory protein cII	
64	 64.91       79469..79639    	 +	56	21229542	-	XCC0064	-	conserved hypothetical protein	
65	 56.90 -2    79830..80669    	 -	279	21229543	-	XCC0065	-	conserved hypothetical protein	
66	 60.42 -1    81392..82240    	 -	282	21229544	-	XCC0066	-	conserved hypothetical protein	
67	 66.28       83614..83871    	 -	85	21229545	-	XCC0067	-	conserved hypothetical protein	
68	 64.58       84235..84474    	 -	79	21229546	-	XCC0068	-	hypothetical protein	
69	 66.83       84761..85387    	 +	208	21229547	-	XCC0069	-	conserved hypothetical protein	
70	 62.43       85785..85973    	 -	62	21229548	-	XCC0070	-	conserved hypothetical protein	
71	 65.15       86108..86305    	 -	65	21229549	-	XCC0071	-	transcriptional regulator	
72	 63.31       86816..87769    	 +	317	21229550	-	XCC0072	-	conserved hypothetical protein	
73	 73.13 +1    87913..88794    	 -	293	21229551	-	XCC0073	-	conserved hypothetical protein	
74	 68.33       89099..89638    	 +	179	21229552	-	XCC0074	-	conserved hypothetical protein	
75	 68.59       90514..90825    	 -	103	21229553	-	XCC0075	-	conserved hypothetical protein	
76	 69.08       90822..91898    	 -	358	21229554	-	XCC0076	-	metalloprotease	
77	 70.02 +1    91998..92654    	 -	218	21229555	-	XCC0077	-	conserved hypothetical protein	
78	 67.13       92887..93321    	 +	144	21229556	-	XCC0078	-	MutT/nudix family protein	
79	 67.34       93809..94849    	 +	346	21229557	-	XCC0079	-	conserved hypothetical protein	
80	 67.98       95194..96183    	 +	329	21229558	-	XCC0080	-	esterase	
81	 63.41       96289..96687    	 +	132	21229559	atsE	XCC0081	-	AtsE	
82	 66.07       96703..97035    	 +	110	21229560	trxA	XCC0082	-	thioredoxin	
83	 65.33       97851..99341    	 +	496	21229561	proP	XCC0083	-	proline/betaine transporter	
84	 69.59 +1    99357..99767    	 -	136	21229562	-	XCC0084	-	conserved hypothetical protein	
85	 70.44 +1    99987..100781   	 +	264	21229563	-	XCC0085	-	conserved hypothetical protein	
86	 67.29      100978..101616   	 +	212	21229564	-	XCC0086	-	conserved hypothetical protein	
87	 75.38 +2   101694..103448   	 -	584	21229565	-	XCC0087	-	conserved hypothetical protein	
88	 74.52 +2   103597..105939   	 -	780	21229566	-	XCC0088	-	conserved hypothetical protein	
89	 75.80 +2   105858..107039   	 -	393	21229567	-	XCC0089	-	conserved hypothetical protein	
90	 73.47 +1   107188..108084   	 -	298	21229568	-	XCC0090	-	conserved hypothetical protein	
91	 68.48      108098..109090   	 -	330	21229569	moxR	XCC0091	-	methanol dehydrogenase regulator	
92	 59.80 -1   109377..110060   	 -	227	21229570	-	XCC0092	-	conserved hypothetical protein	
93	 63.22      110195..111529   	 -	444	21229571	tldD	XCC0093	-	TldD protein	
94	 63.53      111544..113139   	 -	531	21229572	tldD	XCC0094	-	TldD protein	
95	 64.64      114027..115607   	 -	526	21229573	tldD	XCC0095	-	TldD protein	
96	 65.59      116645..117661   	 -	338	21229574	cbbFC	XCC0096	-	fructose-1,6-bisphosphatase	
97	 67.33      117838..119040   	 -	400	21229575	tyrB	XCC0097	-	aromatic-amino-acid aminotransferase	
98	 69.69 +1   119141..121324   	 +	727	21229576	yncD	XCC0098	-	iron transporter	
99	 63.64      121492..121887   	 +	131	21229577	-	XCC0099	-	conserved hypothetical protein	
100	 67.09      122252..122728   	 +	158	21229578	-	XCC0100	-	hypothetical protein	

 
 65.32 MEAN 
 
 4.08  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.