IslandPathversion 1.0

IslandPath Analysis: Wigglesworthia brevipalpis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 23.41 STD DEV: 4.55
Wigglesworthia brevipalpis, complete genome - 0..697721
654 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 16.57 -1     5123..5641     	 -	172	24323607	-	Wbr0001	-	Flavodoxin	
2	 24.74        5658..7112     	 -	484	24323608	-	Wbr0002	-	Trk-type K+ transport systems, membrane components	
3	 24.00        6049..6273     	 +	74	24323609	-	Wbr0003	-	hypothetical protein predicted by GeneMark	
4	 28.50 +1     7456..8925     	 -	489	24323610	-	Wbr0004	-	3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases	
5	 20.72        9176..10792    	 -	538	24323611	-	Wbr0005	-	Predicted unusual protein kinase	
6	 20.31       10952..11212    	 -	86	24323612	-	Wbr0006	-	Methylase involved in ubiquinone/menaquinone biosynthesis	
7	 22.37       11248..11703    	 -	151	24323613	-	Wbr0007	-	Methylase involved in ubiquinone/menaquinone biosynthesis	
8	 28.26 +1    12184..13524    	 +	446	24323614	-	Wbr0008	-	Mn2+ and Fe2+ transporters of the NRAMP family	
9	 24.81       13541..14866    	 -	441	24323615	-	Wbr0009	-	Membrane proteins related to metalloendopeptidases	
10	 23.61       15040..15738    	 +	232	24323616	-	Wbr0010	-	ABC-type Mn/Zn transport systems, ATPase component	
11	 23.43       15769..16566    	 +	265	24323617	-	Wbr0011	-	ABC-type Mn2+/Zn2+ transport systems, permease components	
12	 20.58       16600..17085    	 -	161	24323618	-	Wbr0012	-	Holliday junction resolvasome, endonuclease subunit	
13	 23.41       17148..18830    	 -	560	24323619	-	Wbr0013	-	Aspartyl-tRNA synthetase	
14	 21.12       19299..19781    	 -	160	24323620	-	Wbr0014	-	tmRNA-binding protein	
15	 17.23 -1    19847..20287    	 +	146	24323621	-	Wbr0015	-	Oligoketide cyclase/lipid transport protein	
16	 22.41       20306..21193    	 -	295	24323622	-	Wbr0016	-	Predicted sugar kinase	
17	 21.00       21312..21968    	 +	218	24323623	-	Wbr0017	-	Molecular chaperone GrpE (heat shock protein)	
18	 26.13       22087..23085    	 -	332	24323624	-	Wbr0018	-	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	
19	 25.22       23200..25047    	 -	615	24323625	-	Wbr0019	-	Periplasmic serine proteases (ClpP class)	
20	 24.00       25487..26761    	 -	424	24323626	-	Wbr0020	-	Membrane protein TerC, possibly involved in tellurium resistance	
21	 25.54       26960..27844    	 -	294	24323627	-	Wbr0021	-	Zn-dependent protease with chaperone function	
22	 24.12       28242..29348    	 +	368	24323628	-	Wbr0022	-	Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain	
23	 21.43       29460..30854    	 +	464	24323629	-	Wbr0023	-	Adenylosuccinate lyase	
24	 16.85 -1    30876..31676    	 -	266	24323630	-	Wbr0024	-	ABC-type transport system, involved in lipoprotein release, permease component	
25	 16.99 -1    31844..32155    	 -	103	24323631	-	Wbr0025	-	ABC-type transport system, involved in lipoprotein release, permease component	
26	 22.32       32127..32816    	 -	229	24323632	-	Wbr0026	-	ABC-type antimicrobial peptide transport system, ATPase component	
27	 18.66 -1    32809..34014    	 -	401	24323633	-	Wbr0027	-	ABC-type transport system, involved in lipoprotein release, permease component	
28	 22.35       34265..36322    	 +	685	24323634	-	Wbr0028	-	Transcription-repair coupling factor (superfamily II helicase)	
29	 23.47       36336..37643    	 -	435	24323635	-	Wbr0029	-	NADH dehydrogenase, FAD-containing subunit	
30	 25.73       37740..38081    	 -	113	24323636	-	Wbr0030	-	Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	
31	 20.25       38124..38918    	 -	264	24323637	-	Wbr0031	-	Mg-dependent DNase	
32	 19.09       38918..39907    	 -	329	24323638	-	Wbr0032	-	ATPase involved in DNA replication	
33	 26.81       39911..40615    	 -	234	24323639	-	Wbr0033	-	Thymidylate kinase	
34	 21.78       40602..41648    	 -	348	24323640	-	Wbr0034	-	Predicted periplasmic solute-binding protein	
35	 33.74 +2    41761..42006    	 -	81	24323641	-	Wbr0035	-	Acyl carrier protein	
36	 25.17       42129..42863    	 -	244	24323642	-	Wbr0036	-	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	
37	 24.66       42860..43804    	 -	314	24323643	-	Wbr0037	-	(acyl-carrier-protein) S-malonyltransferase	
38	 26.67       43804..43983    	 -	59	24323644	-	Wbr0038	-	Ribosomal protein L32	
39	 22.02       44116..44451    	 -	111	24323645	-	Wbr0039	-	Pseudouridylate synthases, 23S RNA-specific	
40	 21.78       44411..45085    	 -	224	24323646	-	Wbr0040	-	Pseudouridylate synthases, 23S RNA-specific	
41	 21.77       45433..47784    	 +	783	24323647	-	Wbr0041	-	Ribonucleases G and E	
42	 22.10       47893..48942    	 +	349	24323648	-	Wbr0042	-	Dihydroorotase	
43	 19.94       48962..51373    	 -	803	24323649	-	Wbr0043	-	EMAP domain	
44	 22.95       51384..52385    	 -	333	24323650	-	Wbr0044	-	Phenylalanyl-tRNA synthetase alpha subunit	
45	 25.99       52523..52876    	 -	117	24323651	-	Wbr0045	-	Ribosomal protein L20	
46	 21.89       52921..53121    	 -	66	24323652	-	Wbr0046	-	Ribosomal protein L35	
47	 23.86       53211..53801    	 -	196	24323653	-	Wbr0047	-	Translation initiation factor 3 (IF-3)	
48	 22.82       53764..55674    	 -	636	24323654	-	Wbr0048	-	Threonyl-tRNA synthetase	
49	 18.52 -1    55994..56695    	 +	233	24323655	-	Wbr0049	-	Predicted enzyme with a TIM-barrel fold	
50	 24.77       56679..57554    	 +	291	24323656	-	Wbr0050	-	Pyrroline-5-carboxylate reductase	
51	 22.50       57646..58245    	 +	199	24323657	-	Wbr0051	-	Xanthosine triphosphate pyrophosphatase	
52	 18.01 -1    58232..59047    	 +	271	24323658	-	Wbr0052	-	Coproporphyrinogen III oxidase and related Fe-S oxidoreductases	
53	 15.77 -1    59149..59370    	 +	73	24323659	-	Wbr0053	-	Coproporphyrinogen III oxidase and related Fe-S oxidoreductases	
54	 17.72 -1    60035..60271    	 +	78	24323660	-	Wbr0054	-	Uncharacterized protein conserved in bacteria	
55	 10.64 -2    60169..60309    	 -	46	24323661	-	Wbr0055	-	hypothetical protein predicted by GeneMark	
56	 22.19       60356..61423    	 +	355	24323662	-	Wbr0056	-	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	
57	 22.61       61469..61813    	 -	114	24323663	-	Wbr0057	-	Uncharacterized conserved protein	
58	 24.85       61963..63270    	 +	435	24323664	-	Wbr0058	-	Glutamate-1-semialdehyde aminotransferase	
59	 28.25 +1    63280..64125    	 -	281	24323665	-	Wbr0059	-	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	
60	 21.95       64278..65252    	 -	324	24323666	-	Wbr0060	-	Signal recognition particle GTPase	
61	 19.07       65384..65965    	 +	193	24323667	-	Wbr0061	-	N6-adenine-specific methylase	
62	 22.40       66054..66794    	 -	246	24323668	-	Wbr0062	-	DNA polymerase III, epsilon subunit and related 3'-5' exonucleases	
63	 22.57       66842..67315    	 +	157	24323669	-	Wbr0063	-	Ribonuclease HI	
64	 26.59       67367..68122    	 +	251	24323670	-	Wbr0064	-	Zn-dependent hydrolases, including glyoxylases	
65	 24.27       68482..70863    	 +	793	24323671	-	Wbr0065	-	Membrane glycosyltransferase	
66	 18.99       70928..71875    	 +	315	24323672	-	Wbr0066	-	Predicted sulfurtransferase	
67	 31.28 +1    71938..73203    	 -	421	24323673	-	Wbr0067	-	Flagellin and related hook-associated proteins	
68	 20.75       73406..74923    	 +	505	24323674	-	Wbr0068	-	Flagellar capping protein	
69	 18.83 -1    74949..75341    	 +	130	24323675	-	Wbr0069	-	Flagellin-specific chaperone FliS	
70	 19.39       75375..75704    	 -	109	24323676	-	Wbr0070	-	Flagellar hook-basal body protein	
71	 25.53       75952..77655    	 +	567	24323677	-	Wbr0071	-	Flagellar biosynthesis/type III secretory pathway lipoprotein	
72	 24.85       77625..78638    	 +	337	24323678	-	Wbr0072	-	Flagellar motor switch protein	
73	 23.79       78631..79290    	 +	219	24323679	-	Wbr0073	-	Flagellar biosynthesis/type III secretory pathway protein	
74	 30.07 +1    79287..80663    	 +	458	24323680	-	Wbr0074	-	Flagellar biosynthesis/type III secretory pathway ATPase	
75	 16.34 -1    80668..81120    	 +	150	24323681	-	Wbr0075	-	Flagellar biosynthesis chaperone	
76	 19.30       80919..81146    	 -	75	24323682	-	Wbr0076	-	hypothetical protein predicted by GeneMark	
77	 13.50 -2    81153..82352    	 +	399	24323683	-	Wbr0077	-	ATPase involved in DNA repair	
78	 25.36       82414..82902    	 +	162	24323684	-	Wbr0078	-	Flagellar basal body-associated protein	
79	 17.29 -1    82909..83868    	 +	319	24323685	-	Wbr0079	-	Flagellar motor switch protein	
80	 25.74       83873..84280    	 +	135	24323686	-	Wbr0080	-	Flagellar motor switch/type III secretory pathway protein	
81	 14.55 -1    84277..84606    	 +	109	24323687	-	Wbr0081	-	Flagellar biogenesis protein	
82	 24.24       84616..85407    	 +	263	24323688	-	Wbr0082	-	Flagellar biosynthesis pathway, component FliP	
83	 26.37       85417..85689    	 +	90	24323689	-	Wbr0083	-	Flagellar biosynthesis pathway, component FliQ	
84	 21.27       85692..86462    	 +	256	24323690	-	Wbr0084	-	Flagellar biosynthesis pathway, component FliR	
85	 20.57       86117..86257    	 -	46	24323691	-	Wbr0085	-	hypothetical protein predicted by GeneMark	
86	 21.97       86482..87423    	 -	313	24323692	-	Wbr0086	-	Flagellin and related hook-associated proteins	
87	 21.18       87458..89095    	 -	545	24323693	-	Wbr0087	-	Flagellar hook-associated protein	
88	 15.51 -1    89184..89486    	 -	100	24323694	-	Wbr0088	-	Rod binding protein	
89	 29.74 +1    89488..90600    	 -	370	24323695	-	Wbr0089	-	Flagellar basal-body P-ring protein	
90	 26.78       90610..91296    	 -	228	24323696	-	Wbr0090	-	Flagellar basal body L-ring protein	
91	 31.29 +1    91343..92125    	 -	260	24323697	-	Wbr0091	-	Flagellar basal body rod protein	
92	 27.67       92142..92882    	 -	246	24323698	-	Wbr0092	-	Flagellar basal body rod protein	
93	 29.28 +1    92893..94125    	 -	410	24323699	-	Wbr0093	-	Flagellar hook protein FlgE	
94	 20.83       94177..95016    	 -	279	24323700	-	Wbr0094	-	Flagellar hook capping protein	
95	 28.11 +1    95069..95470    	 -	133	24323701	-	Wbr0095	-	Flagellar basal body rod protein	
96	 23.60       95474..95884    	 -	136	24323702	-	Wbr0096	-	Flagellar basal body protein	
97	 21.53       96043..96720    	 +	225	24323703	-	Wbr0097	-	Flagellar basal body P-ring biosynthesis protein	
98	 18.42 -1    96845..97300    	 +	151	24323704	-	Wbr0098	-	hypothetical protein predicted by GeneMark	
99	 27.02       97297..99483    	 -	728	24323705	-	Wbr0099	-	Flagellar biosynthesis pathway, component FlhA	
100	 22.11       99416..100573   	 -	385	24323706	-	Wbr0100	-	Flagellar biosynthesis pathway, component FlhB	

 
 23.41 MEAN 
 
 4.55  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.