IslandPath Analysis: Vibrio parahaemolyticus RIMD 2210633 chromosome II



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.47   STD DEV: 3.83
Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete sequence - 0..1877212
1752 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 46.58        1150..3120     	 +	656	28899856	-	VPA0001	-	conserved hypothetical protein	
2	 43.74        3409..3879     	 -	156	28899857	-	VPA0002	-	hypothetical protein	
3	 48.45        3876..4808     	 -	310	28899858	-	VPA0003	-	peptide ABC transporter, ATP-binding protein	
4	 47.76        4805..5698     	 -	297	28899859	-	VPA0004	-	peptide ABC transporter, ATP-binding protein	
5	 45.27        6022..6222     	 +	66	28899860	-	VPA0005	-	hypothetical protein	
6	 49.59 +1     6422..7528     	 +	368	28899861	-	VPA0006	-	GTP cyclohydrolase II	
7	 43.75        7497..7592     	 +	31	28899862	-	VPA0007	-	hypothetical protein	
8	 44.97        7634..8389     	 -	251	28899863	-	VPA0008	-	putative amino acid ABC transporter, periplasmic amino acid-binding portion	
9	 48.13        8458..10356    	 +	632	28899864	-	VPA0009	-	putative two-component sensor	
10	 41.90       10458..10667    	 +	69	28899865	-	VPA0010	-	hypothetical protein	
11	 45.19       10802..11518    	 +	238	28899866	-	VPA0011	-	conserved hypothetical protein	
12	 47.28       11595..12677    	 -	360	28899867	-	VPA0012	-	rod shape-determining protein RodA	
13	 43.56       12773..13075    	 +	100	28899868	-	VPA0013	-	hypothetical protein	
14	 49.33 +1    13135..13803    	 +	222	28899869	-	VPA0014	-	hypothetical protein	
15	 49.46 +1    13786..13878    	 -	30	28899870	-	VPA0016	-	hypothetical protein	
16	 51.07 +1    13813..14511    	 +	232	28899871	-	VPA0015	-	ABC transporter, ATP-binding protein	
17	 49.65 +1    14499..15767    	 +	422	28899872	-	VPA0017	-	conserved hypothetical protein	
18	 49.87 +1    15760..16533    	 +	257	28899873	-	VPA0018	-	hypothetical protein	
19	 49.22       16566..17906    	 +	446	28899874	-	VPA0019	-	hypothetical protein	
20	 46.80       17907..18938    	 +	343	28899875	-	VPA0020	-	conserved hypothetical protein	
21	 46.72       18940..19731    	 +	263	28899876	-	VPA0021	-	response regulator	
22	 46.23       19809..20444    	 +	211	28899877	-	VPA0022	-	hypothetical protein	
23	 47.68       20547..21041    	 -	164	28899878	-	VPA0023	-	peptidyl-prolyl cis-trans isomerase B	
24	 48.86       21160..22821    	 -	553	28899879	-	VPA0024	-	methyl-accepting chemotaxis protein	
25	 50.13 +1    23001..23387    	 -	128	28899880	-	VPA0025	-	hypothetical protein	
26	 46.14       23389..24216    	 -	275	28899881	-	VPA0026	-	hypothetical protein	
27	 45.93       24113..24247    	 -	44	28899882	-	VPA0027	-	hypothetical protein	
28	 46.17       24466..25104    	 +	212	28899883	-	VPA0028	-	antibiotic acetyltransferase	
29	 43.26       25171..25311    	 +	46	28899884	-	VPA0029	-	hypothetical protein	
30	 46.79       25362..25517    	 +	51	28899885	-	VPA0030	-	hypothetical protein	
31	 46.52       25649..26884    	 +	411	28899886	-	VPA0031	-	sodium/glutamate symporter	
32	 48.68       26983..27816    	 -	277	28899887	-	VPA0032	-	putative membrane protein	
33	 48.37       27813..28670    	 -	285	28899888	-	VPA0033	-	putative ABC transporter ATP-binding protein	
34	 46.19       28667..29047    	 -	126	28899889	-	VPA0034	-	putative transcriptional regulator, GntR family	
35	 46.62       29473..30699    	 +	408	28899890	-	VPA0035	-	sodium/glutamate symporter	
36	 47.06       30877..31743    	 +	288	28899891	-	VPA0036	-	hypothetical protein	
37	 42.98       31787..31900    	 +	37	28899892	-	VPA0037	-	hypothetical protein	
38	 45.69       31871..32671    	 -	266	28899893	-	VPA0038	-	glucosamine-6-phosphate isomerase	
39	 45.24       33057..33308    	 +	83	28899894	-	VPA0039	-	conserved hypothetical protein	
40	 44.92       33460..33813    	 -	117	28899895	-	VPA0040	-	conserved hypothetical protein	
41	 46.11       33962..34861    	 +	299	28899896	-	VPA0041	-	transcriptional regulator, LysR family	
42	 46.84       34981..35676    	 -	231	28899897	-	VPA0042	-	hypothetical protein	
43	 47.97       35698..36141    	 -	147	28899898	-	VPA0043	-	conserved hypothetical protein	
44	 39.01 -1    36354..36494    	 -	46	28899899	-	VPA0044	-	hypothetical protein	
45	 49.71 +1    36875..38242    	 +	455	28899900	-	VPA0045	-	ada regulatory protein	
46	 49.69 +1    38239..38721    	 +	160	28899901	-	VPA0046	-	methylated-DNA-protein-cysteine S-methyltransferase	
47	 39.47 -1    38718..38831    	 -	37	28899902	-	VPA0048	-	hypothetical protein	
48	 48.72       38821..39639    	 +	272	28899903	-	VPA0047	-	hypothetical protein	
49	 47.62       39723..40331    	 -	202	28899904	-	VPA0049	-	conserved hypothetical protein	
50	 46.46       40533..40928    	 +	131	28899905	-	VPA0050	-	putative inner membrane protein	
51	 50.79 +1    40956..42221    	 -	421	28899906	-	VPA0051	-	NhaD	
52	 46.69       42797..43822    	 -	341	28899907	-	VPA0052	-	hypothetical protein	
53	 44.33       44076..44666    	 +	196	28899908	-	VPA0053	-	putative transcription regulator protein	
54	 49.65 +1    44787..45644    	 +	285	28899909	-	VPA0054	-	hypothetical protein	
55	 49.43 +1    45762..48308    	 -	848	28899910	-	VPA0055	-	chitinase	
56	 46.03       48678..49181    	 -	167	28899911	-	VPA0056	-	hypothetical protein	
57	 47.72       49506..49790    	 +	94	28899912	-	VPA0057	-	conserved hypothetical protein	
58	 48.23       49961..50242    	 +	93	28899913	-	VPA0058	-	hypothetical protein	
59	 46.29       50262..51419    	 -	385	28899914	-	VPA0059	-	GGDEF family protein	
60	 42.74       51666..51782    	 +	38	28899915	-	VPA0060	-	lysis protein - phage PP7	
61	 48.40       51995..53335    	 +	446	28899916	-	VPA0061	-	hypothetical membrane protein	
62	 49.23       53424..55103    	 -	559	28899917	-	VPA0062	-	putative ribosomal large chain pseudouridine synthase A	
63	 47.83       55221..55841    	 -	206	28899918	-	VPA0063	-	hypothetical protein	
64	 48.79       55835..56701    	 -	288	28899919	-	VPA0064	-	hypothetical protein	
65	 49.44 +1    56828..57715    	 +	295	28899920	-	VPA0065	-	putative LysR-family transcriptional regulatory protein	
66	 47.76       57811..58614    	 +	267	28899921	-	VPA0066	-	hypothetical protein	
67	 48.64       58723..59127    	 -	134	28899922	-	VPA0067	-	hypothetical protein	
68	 42.77       59137..60228    	 -	363	28899923	-	VPA0068	-	GGDEF family protein	
69	 40.48 -1    60228..60689    	 -	153	28899924	-	VPA0069	-	hypothetical protein	
70	 47.02       61135..61974    	 -	279	28899925	-	VPA0070	-	putative esterase	
71	 49.70 +1    62036..63184    	 -	382	28899926	-	VPA0071	-	putative alcohol dehydrogenase	
72	 49.81 +1    63478..64284    	 +	268	28899927	-	VPA0072	-	putative N-hydroxyarylamine O-acetyltransferase	
73	 51.38 +1    64365..65234    	 +	289	28899928	-	VPA0073	-	putative transcriptional regulator	
74	 48.95       65235..65945    	 -	236	28899929	-	VPA0074	-	putative DNA polymerase III, epsilon subunit	
75	 49.28       65948..67816    	 -	622	28899930	-	VPA0075	-	hypothetical protein	
76	 45.49       67900..68697    	 -	265	28899931	-	VPA0076	-	putative regulator	
77	 49.34 +1    68938..69699    	 +	253	28899932	-	VPA0077	-	2-deoxy-D-gluconate 3-dehydrogenase	
78	 45.14       69718..70242    	 +	174	28899933	-	VPA0078	-	putative membrane protein	
79	 45.48       70250..70570    	 +	106	28899934	-	VPA0079	-	putative pectin degradation protein (sugar phosphate isomerase family)	
80	 47.48       70611..71246    	 +	211	28899935	-	VPA0080	-	putative sugar-phosphate isomerase	
81	 50.88 +1    71323..72234    	 +	303	28899936	-	VPA0081	-	hypothetical protein	
82	 48.71       72333..73262    	 +	309	28899937	-	VPA0082	-	putative 2-dehydro-3-deoxygluconokinase	
83	 48.56       73274..73897    	 +	207	28899938	-	VPA0083	-	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase	
84	 49.94 +1    74083..75822    	 -	579	28899939	-	VPA0084	-	putative transporter protein	
85	 47.35       75952..76629    	 +	225	28899940	-	VPA0085	-	putative exported protein	
86	 51.19 +1    76645..78873    	 +	742	28899941	-	VPA0086	-	putative exopolygalacturonate lyase	
87	 48.84       79174..80946    	 +	590	28899942	-	VPA0087	-	putative transporter	
88	 46.19       81003..82169    	 +	388	28899943	-	VPA0088	-	oligogalacturonate lyase	
89	 50.39 +1    82256..83029    	 -	257	28899944	-	VPA0089	-	putative siderophore utilization protein	
90	 48.38       83209..83793    	 -	194	28899945	-	VPA0090	-	conserved hypothetical protein	
91	 49.21       83908..84348    	 +	146	28899946	-	VPA0091	-	transcriptional regulator, AsnC family	
92	 49.45 +1    84564..85742    	 +	392	28899947	-	VPA0092	-	spindolin-related protein	
93	 49.11       85859..86479    	 -	206	28899948	-	VPA0093	-	hypothetical protein	
94	 47.76       86518..86829    	 -	103	28899949	-	VPA0094	-	hypothetical protein	
95	 45.31       86839..87489    	 -	216	28899950	-	VPA0095	-	hypothetical protein	
96	 43.57       87986..88630    	 +	214	28899951	-	VPA0096	-	outer membrane protein OmpW	
97	 49.71 +1    88863..89888    	 +	341	28899952	-	VPA0097	-	putative secretion protein	
98	 48.83       89885..91375    	 +	496	28899953	-	VPA0098	-	putative efflux pump protein	
99	 46.34       91472..91717    	 -	81	28899954	-	VPA0099	-	hypothetical protein	
100	 47.41       91898..93034    	 +	378	28899955	-	VPA0100	-	conserved hypothetical protein	

 
 45.47 MEAN 
 
 3.83  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.